Citrus Sinensis ID: 001224

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120
Protein Sequence
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccHHHHHHHHHHHccccEEEHHHHHHHHHcccHHHHHHHHcccEEEccccccEEHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHcccccccccccccHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccEEEccccccEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEccccccccEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEccccccccEEEcccccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHHHHHccccccccccccEEEEEEccccccEEEccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEEEEEEcccccccHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEccccccccccccccEEEEEEcccccHHHHHHHHccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEccccccEEEEEccccEEEEEEccccccEEEEcccccccEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFedevhngnwdDVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENfreneqlskygdtksARSIMLVELKKLieanplfrdklqfpnlknsRLRTLINQSLNWQHqlcknprpnpdiktlfvdhtcgqpngarapspannpllgslpkagvfpplgahgpfqptpapvptplagwmsnpptvthpavsggaiglgspsipagtslshsalkhprtpptnpsvdypsgdsdhlskrtrpigisdeinlpvnvlpvsftghshshshsqafstpedlpktvtrtlnqgsspmsmdfhpVQQTLLLVGtnvgdiglwevgsrerlvlrnfkvwdlgacsmplqaalvkdpgvsvnrviwspdgslfgvAYSRHIVQIYSyhggdevrQHLEidahvggvndiafshpnkqlcvitcgddktiKVWDATngakqyifegheapvysvcphhkeNIQFIFSTALDGKIKAWLYDnlgsrvdyeapgrwcttmaysadgtrtyqgfrkrslgvvqfdttknrflaagddfsikfwDMDSVQLLTSIdadgglpasprirfnkdgclLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskptisPISAAAAAAATSAGLADRAAsmvsipgmngdvrsladvkpriteesndkSKVWKLtelsepnqcrslrlpenlrATKISRLIFTNSGNAILALASNAIHLLWKWQrternssgkatasvapqlwqppsgimmtndvtdsnpeeavpcfalskndsyvmsasggkislfnmmtfktmatfmppppaatflafhpqdnniiaigmddssiqIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVssgadsqlcvwssdgwekqknrflqiptgrtptaqsdtrvqfhQDQIHFLVVHETQLAIFETTKLEcvkqwvpressapithatfscdsqLVYACFLDATVCVFSAANLKLrcrinpsaylpagvsssnvhplviaahpqepnefalglsdggvhvfeplesegkwgvpppvdngstssmpatppvggsgsdqaqr
Flexible Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGftkvddnrysMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENeqlskygdtksaRSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSqafstpedlpkTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGsrvdyeapgrwCTTMAYSADGTRTYQGFRKrslgvvqfdttKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYdasrtsenskptiSPISAAAAAAATSAGLADRAASMvsipgmngdvrsladvkpriteesndkskvwkltelsepnqcrslrlpeNLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNssgkatasvapqlwqppsgIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGstssmpatppvggsgsdqaqr
Low Complexity Region (SEG)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGpfqptpapvptpLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGhshshshsQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIsaaaaaaatsagladraasMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNmmtfktmatfmppppaatflafHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Disordered region (IsUnstruct)
******ELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPR*NPDIKTLFVDHTC*********************************************************************************************************************EINLPVNVLPVSF*************************************FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY********************************************************************************LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR**************************************VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP**********TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP***NEFALGLSDGGVHVFE**************************************
Disordered Region (DISOPRED)
****SRE*VFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE***************IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTV************G*************ALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV****************************
Disordered Region (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSL****************************KRTRPIGISDEINLPVNVLPVSFT****************DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA**********ISPIS**************RAASMVSIPGMNGDVRSLADVKPRI********KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT************APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Disordered Region (DISPRO)
**SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATP************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1120	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	0.986	0.977	0.825	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.976	0.976	0.810	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.985	0.972	0.679	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.95	0.940	0.616	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.949	0.959	0.593	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.241	0.199	0.292	2e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.416	0.305	0.223	7e-15
Q54KL5	335	WD repeat-containing prot	yes	no	0.184	0.617	0.254	5e-13
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.423	0.376	0.209	2e-11
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.383	0.255	0.219	2e-11

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1961 bits (5081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 946/1146 (82%), Positives = 1027/1146 (89%), Gaps = 41/1146 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPA       ALKHPRTPPTN S+
Sbjct: 241  PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPA-------ALKHPRTPPTNASL 293

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPS DS+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS   AF  P+DLPKTV RT
Sbjct: 294  DYPSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVART 351

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            L+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAA
Sbjct: 352  LSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAA 411

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            LVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS
Sbjct: 412  LVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFS 471

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
             PNKQLCVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGK
Sbjct: 472  TPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGK 531

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR                          T
Sbjct: 532  IKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRT 591

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634
            YQGF KRSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK
Sbjct: 592  YQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNK 651

Query: 635  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 694
            +G LLAVS N+N IKI+A SDG+RLL TFEN+      +SE+SKP I+ I+AAAAAAATS
Sbjct: 652  EGSLLAVSGNENVIKIMANSDGLRLLHTFENI------SSESSKPAINSIAAAAAAAATS 705

Query: 695  AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754
            AG ADR+A++VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPEN
Sbjct: 706  AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765

Query: 755  LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 814
            LR  KISRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+M
Sbjct: 766  LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILM 825

Query: 815  TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874
            TNDV ++NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH
Sbjct: 826  TNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 885

Query: 875  PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 934
            PQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCV
Sbjct: 886  PQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 945

Query: 935  WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ 994
            W++DGWEKQ+++ L +P GR  +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQ
Sbjct: 946  WNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQ 1005

Query: 995  WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1054
            W  RES APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNV
Sbjct: 1006 WAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNV 1065

Query: 1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG 1114
            HPLVIAAHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S  P  P VG S 
Sbjct: 1066 HPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASA 1125

Query: 1115 SDQAQR 1120
            SDQ QR
Sbjct: 1126 SDQPQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1942 bits (5031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 929/1146 (81%), Positives = 1017/1146 (88%), Gaps = 52/1146 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI A       ALKHPRTPP+N +V
Sbjct: 241  PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQA-------ALKHPRTPPSNSAV 293

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPSGDSDH+SKRTRP+GISDE++L VN+LP++F G +H H+  Q F  P+DLPKTV RT
Sbjct: 294  DYPSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVART 351

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            L+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAA
Sbjct: 352  LSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAA 411

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            LVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS
Sbjct: 412  LVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFS 471

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
             PNKQLCV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGK
Sbjct: 472  TPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGK 531

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDN+GSRVDYEAPGRWCTTMAYSADGTR                          T
Sbjct: 532  IKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRT 591

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634
            YQGF KRSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK
Sbjct: 592  YQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNK 651

Query: 635  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 694
            +G LLAVS NDN IK++A SDG+RLL T ENL      +SE+SKP I+ I          
Sbjct: 652  EGSLLAVSANDNMIKVMANSDGLRLLHTVENL------SSESSKPAINSIP--------- 696

Query: 695  AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754
              + +R AS+VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN
Sbjct: 697  --MVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPEN 754

Query: 755  LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 814
            +R TKISRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+M
Sbjct: 755  MRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILM 814

Query: 815  TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874
            TNDV ++NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH
Sbjct: 815  TNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874

Query: 875  PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 934
            PQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCV
Sbjct: 875  PQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 934

Query: 935  WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ 994
            W++DGWEKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQ
Sbjct: 935  WNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994

Query: 995  WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1054
            W  RES+APITHATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNV
Sbjct: 995  WPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNV 1054

Query: 1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG 1114
            HPLVIAAHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S 
Sbjct: 1055 HPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASA 1114

Query: 1115 SDQAQR 1120
            SDQ QR
Sbjct: 1115 SDQPQR 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1611 bits (4172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 782/1151 (67%), Positives = 915/1151 (79%), Gaps = 47/1151 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM+YFED V  G WDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCG PNGA  PSP  N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNP-S 299
            PTPAP+ T LAGWM NP +V HP VS G IGLG+P+    +++S    + PR+PPTN  S
Sbjct: 241  PTPAPLTTSLAGWMPNP-SVQHPTVSAGPIGLGAPN----SAVSMLKRERPRSPPTNSLS 295

Query: 300  VDYPSGDSDHLSKRTRPIGISDEIN-LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVT 358
            +DY + DS+ + KR RP GISD +N LPVNVLPV++ G SH+H+    +ST +DLPK V+
Sbjct: 296  MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVS 351

Query: 359  RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ 418
            R L+QGS+  SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL  C++ LQ
Sbjct: 352  RILSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQ 411

Query: 419  AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA 478
            A+L  +   +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+A
Sbjct: 412  ASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLA 471

Query: 479  FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD 538
            FS PN+QLCV+TCG+DKTIKVWDA  G K + FEGHEAPVYSVCPH KENIQFIFSTA+D
Sbjct: 472  FSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVD 531

Query: 539  GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------------------------- 573
            GKIKAWLYDN+GSRVDY+APGR CT+MAY ADGTR                         
Sbjct: 532  GKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVK 591

Query: 574  -TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 632
             TY G  KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S  A+GGLP+SP +R 
Sbjct: 592  RTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRI 651

Query: 633  NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---KPTISPISAAAA 689
            NK+G LLAVST DNGIKILA ++G R+L +  N   D+SR    S    P +       +
Sbjct: 652  NKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNS 711

Query: 690  AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749
            +   S  + +R+  + S+ G+NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+L
Sbjct: 712  STGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTL 770

Query: 750  RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809
            RLP+ L   ++ +LI+TNSG AILALA NA H LWKWQ++ERN  GKA ++V PQLWQP 
Sbjct: 771  RLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830

Query: 810  SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 869
            SG++MTND  + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT
Sbjct: 831  SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890

Query: 870  FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 929
             LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGAD
Sbjct: 891  SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950

Query: 930  SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 989
            SQLCVWS DGWEKQ ++ +QIP+G +P   + TRVQFHQDQIH LVVH +QLAI+E  KL
Sbjct: 951  SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010

Query: 990  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049
            E +KQW+P+ESS  +T A +SCDSQ +YA F D +V + +A  L+L+CRI P++YLP+  
Sbjct: 1011 ENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSN- 1069

Query: 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPP 1109
             SS V+P  +AAHP EPN+FA+GL+DGGVHV EP   EGKWG+  P +NG+  S+ + P 
Sbjct: 1070 PSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP- 1128

Query: 1110 VGGSGSDQAQR 1120
                GSDQ  R
Sbjct: 1129 ----GSDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1383 bits (3579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/1127 (61%), Positives = 845/1127 (74%), Gaps = 63/1127 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P + ++ +   F PLG H GPF
Sbjct: 181  WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239

Query: 240  QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPT 296
            Q    PAP    LAGWM+NP P+ + P  SG       P  P+      + LKHPR P  
Sbjct: 240  QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQV----NELKHPRAPSN 293

Query: 297  NPSV-DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPK 355
            +  + DY S D + L KR R    S+E+  P             +HSH  A  + +DLP+
Sbjct: 294  SLGLMDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPR 338

Query: 356  TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415
             V  T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+
Sbjct: 339  NVVSTIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSV 398

Query: 416  PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 475
              Q ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VN
Sbjct: 399  IFQGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVN 457

Query: 476  DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 535
            D+AF+HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFST
Sbjct: 458  DLAFAHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFST 516

Query: 536  ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT----------------------- 572
            ALDGKIKAWLYDN+GSRVDY+APG+WCTTM YSADG+                       
Sbjct: 517  ALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEG 576

Query: 573  ---RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR 629
               RTY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR
Sbjct: 577  ALKRTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPR 636

Query: 630  IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 689
            +RFNKDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K + S ++++ +
Sbjct: 637  LRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSIS 696

Query: 690  AAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 748
             A       D  +     P  NG +  S    KPR   +S DKSK  +LTE+ +P QCR 
Sbjct: 697  PAIGKIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQ 755

Query: 749  LRLPENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 807
            + +P++  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQ
Sbjct: 756  VTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQ 815

Query: 808  PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA 867
            P SG++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA
Sbjct: 816  PNSGLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPA 874

Query: 868  ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 927
            +TFLAFHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSG
Sbjct: 875  STFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSG 934

Query: 928  ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 987
            AD+QL  W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +
Sbjct: 935  ADAQLFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDAS 992

Query: 988  KLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1046
            K+EC+ +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P
Sbjct: 993  KMECIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMP 1052

Query: 1047 AGV-SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1092
                +S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV
Sbjct: 1053 QPTPNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1338 bits (3462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1139 (59%), Positives = 829/1139 (72%), Gaps = 76/1139 (6%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN KYF+++V  G WDDVE YLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L++SRLRTLINQSLN
Sbjct: 121  LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF DHTC  PNG  APS  N P+  +L K   +P LG H    
Sbjct: 181  WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239

Query: 240  QPTPAPVPTPLAGWMSNPPTVTHPAVSGGA---IGLGSPSIPAGTSLSHSALKHPRTPPT 296
                A     LA WM+        A SG +     + +P++        S LK PRTPP 
Sbjct: 240  PGPAAANAGALASWMA--------AASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPA 291

Query: 297  NPS-VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPK 355
             P  VDY + D + L KR RP    +E+  P                  QA  + EDLP 
Sbjct: 292  TPGIVDYQNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPT 336

Query: 356  TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415
                 L+QGS+  SM+F+P+Q TLLLVG+  G+I LWE+ +RERLV R FK+WD+  CS 
Sbjct: 337  KAALALHQGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSH 396

Query: 416  PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 475
              QA + K+  +SV RV WSPDG+  GVA+++H++Q+Y++ G +++RQH EIDAHVG VN
Sbjct: 397  QFQALIAKETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVN 456

Query: 476  DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 535
            D+AF++PN+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFST
Sbjct: 457  DLAFANPNRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFST 515

Query: 536  ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT----------------------- 572
            A+DGKIKAWLYDNLGSRVDY+APG+WCT M YSADGT                       
Sbjct: 516  AIDGKIKAWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEG 575

Query: 573  ---RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR 629
               RTY+ F+K+  GVVQFDT+KN FLA G+D  IKFWDM+++ +LTS DA+GGLPA P 
Sbjct: 576  SIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPH 635

Query: 630  IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 689
            +RFNKDG LLAV+T DNG KILA   G R LR  E  A +  RT  + K      +   A
Sbjct: 636  LRFNKDGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFK------AVPGA 689

Query: 690  AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749
              A+     +R + +     +NG    +   K RI ++S DK K W+L E+ +P+QC   
Sbjct: 690  PVASVNCKVERGSPVRHSQMLNG----VDPSKSRI-DDSTDKPKSWQLAEILDPSQCFQA 744

Query: 750  RLPENL-RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP 808
             LP+    +TK+ +L++TNSG  ILAL SN I  LWKW   E+N SGKATA+V PQ WQP
Sbjct: 745  TLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQP 804

Query: 809  PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA 868
             SG++MTNDV+  N E A PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+
Sbjct: 805  NSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPAS 864

Query: 869  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 928
            TFLAFHPQDNN+IAIGM+DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGA
Sbjct: 865  TFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGA 924

Query: 929  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988
            D+Q+C WS D WEK+K+  +Q+P G+   A  DTRVQFH DQ+  LVVHETQLA+F+ +K
Sbjct: 925  DAQICFWSIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASK 982

Query: 989  LECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1047
            +EC++QW+P++S SAPI+ A ++C+SQL+Y  F D  + VF A +L+LRCRI+PSAYLP 
Sbjct: 983  MECIRQWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQ 1042

Query: 1048 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1103
            G  +  + PLV+AAHPQ+PN+FA+GL+DG V + EP E EGKWG+ PP   +++ ST+S
Sbjct: 1043 G--NQGLSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)

Query: 356  TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 412
            T T+TL   GSS +S+ F P  Q    V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 413  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 472
            C+  L+       G SV  V +SPDG           ++I+    G    Q LE   H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052

Query: 473  GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
             V  + FS P+ Q  V +  DD TIK+WDA +G      EGH   V+SV      + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108

Query: 533  FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 585
             S ++DG IK W   +       E  G W  ++A+S DG R   G    ++ +       
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168

Query: 586  --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 631
                          V F     R  +   D +IK WD  S     +++  GG   S  + 
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226

Query: 632  FNKDGCLLAVSTNDNGIKILATSDG 656
            F+ DG  +A  ++DN IKI  T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 119/532 (22%), Positives = 215/532 (40%), Gaps = 66/532 (12%)

Query: 428  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            SV  V +SPDG LF    S  IV+ +    G E+   L    H   VN + FS   K L 
Sbjct: 866  SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922

Query: 488  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
              +  DD+T+++WD ++G     F+GH + V SV      N   + S + D  ++ W   
Sbjct: 923  --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978

Query: 548  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 606
            +      ++    W  ++A++ DG+                       LA G  D +++ 
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016

Query: 607  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 666
            WD+ S Q        G       + F+ DG +LA  ++D  +++   S G   L T +  
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072

Query: 667  AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 722
                  TS       SP  A  A+        L D ++   + ++ G    VR L     
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127

Query: 723  RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 775
             +T  +    ++ +L ++S      +L+   N + A   S     + + SG+  + L   
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187

Query: 776  -ASNAIHLL-----WKWQRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEE 825
             +S  +++L     W       N  G   AS +     +LW+  S   +    T      
Sbjct: 1188 SSSKCLYILQGHTSWV-NSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTS 1243

Query: 826  AVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 884
             V     + + S + S S  K + L+++ + K + TF         +AF+P D +++A G
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASG 1302

Query: 885  MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
              D +++++ +   +     +GH+  ++ + FS    +L S   D  + +WS
Sbjct: 1303 SGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct: 48  SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
             +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
           N G           CT M  +     T           V F+      ++   D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199

Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  + QLL +I  + G   S  ++F+ +G  +   T DN +++ + ++  + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)

Query: 435  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 494
            SP+G L     +   V+++    G  +   L    H   V  + FS P+ ++ + +CG D
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705

Query: 495  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 554
            + +K+W   +G       GHE  V+SV  H   + + + S + D  IK W   +      
Sbjct: 706  ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763

Query: 555  YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 614
                  W   +A+S DG                     N   ++  D +IK WD+   + 
Sbjct: 764  LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802

Query: 615  LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 674
            L ++ +  G   S  + F+ DG  LA  + D  IKI     G   L+T+  + +  S  S
Sbjct: 803  LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857

Query: 675  ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 731
                P    + + +               + ++ G   +V S+A   D +       +  
Sbjct: 858  IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917

Query: 732  SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 790
             ++W         QC    L      T  +  +  +    ILA  SN   + LW WQ  +
Sbjct: 918  VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969

Query: 791  RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 841
              SS +        +   P    + +  TDS+          CF  L ++  +V +    
Sbjct: 970  YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029

Query: 842  ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 892
                  A+G     + L+N+ T + + T          +A+ P D  ++A    D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088

Query: 893  YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 952
            ++         L+GHS R+    FS    ++ +   D  + +     W+ Q+ + L+  T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143

Query: 953  GRT 955
            G T
Sbjct: 1144 GHT 1146

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)

Query: 460  EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 519
            E+++   ++ H  GV  I+ S   +   + +   DKTIK+W + +G       GHE  VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117

Query: 520  SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 577
            SV      + Q I S   D  IK W                       ++DGT  +T  G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153

Query: 578  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 637
              ++++  V F        +A  D SIK WD  S QLL ++   G       +RF+ DG 
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210

Query: 638  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 697
             +A  + D  +K+    DG +LL+T     +     S +  P    +++A+A        
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Query: 698  ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 736
                  + ++ G N    DV   +D K   +   ++  K+W                   
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327

Query: 737  LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 793
            +  L + N   S  L   +R  +   IS L      + + A++   +H        + + 
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377

Query: 794  SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 852
               A A    QLW    G ++     +    +A+   + +     + SA+  K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433

Query: 853  MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 912
               K + T +        + F P D   +A    D++++++NV   + K  LKGH+  + 
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492

Query: 913  GLAFSHALNVLVSSGADSQLCVWSS 937
             ++FS    ++ S+ AD  + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1120
24461849	1127	CTV.2 [Citrus trifoliata]	0.983	0.976	0.958	0.0
224134436	1172	predicted protein [Populus trichocarpa]	0.995	0.951	0.851	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.986	0.976	0.851	0.0
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	0.988	0.972	0.854	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.986	0.975	0.853	0.0
449517721	1139	PREDICTED: LOW QUALITY PROTEIN: protein	0.990	0.973	0.845	0.0
449468952	1139	PREDICTED: protein TOPLESS-like [Cucumis	0.990	0.973	0.845	0.0
255553317	1115	WD-repeat protein, putative [Ricinus com	0.970	0.974	0.848	0.0
357458875	1138	WD repeat-containing protein, putative [	0.988	0.972	0.838	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.990	0.976	0.837	0.0

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 2230 bits (5779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1098/1146 (95%), Positives = 1099/1146 (95%), Gaps = 45/1146 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ
Sbjct: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPA      +ALKHPRTPPTNPSV
Sbjct: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPA------AALKHPRTPPTNPSV 286

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS    QAFS PEDLPKTVTRT
Sbjct: 287  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRT 342

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA
Sbjct: 343  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 402

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS
Sbjct: 403  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 462

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
            HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK
Sbjct: 463  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 522

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                          T
Sbjct: 523  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRT 582

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634
            YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK
Sbjct: 583  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 642

Query: 635  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 694
            DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS
Sbjct: 643  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS 702

Query: 695  AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 754
            AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN
Sbjct: 703  AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 762

Query: 755  LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 814
            LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM
Sbjct: 763  LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 822

Query: 815  TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874
            TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH
Sbjct: 823  TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 882

Query: 875  PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 934
            PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV
Sbjct: 883  PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 942

Query: 935  WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ 994
            W SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ
Sbjct: 943  WGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ 1002

Query: 995  WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1054
            WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV SSNV
Sbjct: 1003 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNV 1061

Query: 1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG 1114
            HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG
Sbjct: 1062 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG 1121

Query: 1115 SDQAQR 1120
            SDQAQR
Sbjct: 1122 SDQAQR 1127

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa]

 Score = 2051 bits (5314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1002/1177 (85%), Positives = 1058/1177 (89%), Gaps = 62/1177 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAGT--------SLSH------ 285
            PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI   +        S +H      
Sbjct: 241  PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300

Query: 286  ----------------SALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 329
                            +ALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301  IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360

Query: 330  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 389
            LP+SF GH H H   Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361  LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418

Query: 390  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 449
            GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419  GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478

Query: 450  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 509
            VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA  GAKQY
Sbjct: 479  VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538

Query: 510  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 569
             FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539  TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598

Query: 570  DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 603
            DGTR                          TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599  DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658

Query: 604  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
            IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659  IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718

Query: 664  ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 723
            ENL+YDASR SE+  PT++PISAAAAAAATS+GLADR AS+V++ GMNGD R+L DVKPR
Sbjct: 719  ENLSYDASRASES--PTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPR 776

Query: 724  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 783
            I EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLL
Sbjct: 777  IAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLL 836

Query: 784  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 843
            WKWQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSAS
Sbjct: 837  WKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSAS 896

Query: 844  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 903
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 897  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 956

Query: 904  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 963
            LKGHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTR
Sbjct: 957  LKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTR 1016

Query: 964  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1023
            VQFHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDA
Sbjct: 1017 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDA 1076

Query: 1024 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083
            TVCVFSAANL+LRCRINPS+Y P  V SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEP
Sbjct: 1077 TVCVFSAANLRLRCRINPSSYPPPNV-SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEP 1135

Query: 1084 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1120
            LESEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1136 LESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 2022 bits (5239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 977/1147 (85%), Positives = 1050/1147 (91%), Gaps = 42/1147 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPA       ALKHPRTPPTNPSV
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPA-------ALKHPRTPPTNPSV 293

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPSGDSDH+SKRTRPIG+SDE+NLPVNVL  +F GH H     QAF+ P+DLPKT  R+
Sbjct: 294  DYPSGDSDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRS 349

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            LNQGSSPMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAA
Sbjct: 350  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAA 409

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            LVKDPGVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFS
Sbjct: 410  LVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFS 469

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
            HPNKQLCVITCGDDKTIKVWDA  GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGK
Sbjct: 470  HPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGK 529

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                          T
Sbjct: 530  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRT 589

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634
            YQGFRKRSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNK
Sbjct: 590  YQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNK 649

Query: 635  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAAT 693
            DG LLAVS N+NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA +
Sbjct: 650  DGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATS 709

Query: 694  SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 753
            +A LA+RA+S+V+I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPE
Sbjct: 710  AA-LAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPE 768

Query: 754  NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 813
            N+R  KISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+
Sbjct: 769  NVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGIL 828

Query: 814  MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 873
            MTND+TD+N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAF
Sbjct: 829  MTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAF 888

Query: 874  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 933
            HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+C
Sbjct: 889  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQIC 948

Query: 934  VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 993
            VW++DGWEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+K
Sbjct: 949  VWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLK 1008

Query: 994  QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053
            QW PR+SSAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A V SSN
Sbjct: 1009 QWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASV-SSN 1067

Query: 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1113
            V PLVIAAHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT    G+
Sbjct: 1068 VQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GA 1125

Query: 1114 GSDQAQR 1120
             SD+AQR
Sbjct: 1126 SSDEAQR 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score = 2019 bits (5232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 983/1151 (85%), Positives = 1053/1151 (91%), Gaps = 44/1151 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            PTPAPVPTPL  WMSNP TVTHPAVSGG IGLG+PSIPA       ALKHPRTPPTNPSV
Sbjct: 241  PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPA-------ALKHPRTPPTNPSV 291

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPSGDS+H++KR RP+GISDE+NLPVNVLPV+F GH HS    QAF+ P+DLPKT+ R 
Sbjct: 292  DYPSGDSEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRN 347

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            L QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAA
Sbjct: 348  LTQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAA 407

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            L KDPGVSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFS
Sbjct: 408  LAKDPGVSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFS 467

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
            HPNKQLCVITCGDDKTIKVWDATNG KQY FEGHE  VYSVCPH+KENIQFIFSTALDGK
Sbjct: 468  HPNKQLCVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGK 527

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDNLGSRVDY+APGRWCTTMAYSADGTR                          T
Sbjct: 528  IKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRT 587

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIR 631
            YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP   ASPRIR
Sbjct: 588  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIR 647

Query: 632  FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAA 690
            FNKDG LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+ +KP I+ ISAAAAA
Sbjct: 648  FNKDGTLLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAA 707

Query: 691  AATSA-GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749
            AA ++ GLADR AS+V+I GMNGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSL
Sbjct: 708  AAATSAGLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSL 767

Query: 750  RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809
            RL ENLR TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP 
Sbjct: 768  RLQENLRITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPT 827

Query: 810  SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 869
            SGI+MTNDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAAT
Sbjct: 828  SGILMTNDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT 887

Query: 870  FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 929
            FLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD
Sbjct: 888  FLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGAD 947

Query: 930  SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 989
            +QLCVWSSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL
Sbjct: 948  AQLCVWSSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKL 1007

Query: 990  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049
            +CVKQWV RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA V
Sbjct: 1008 DCVKQWVQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASV 1067

Query: 1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPP 1109
            S+SNVHPLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP 
Sbjct: 1068 SNSNVHPLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPS 1127

Query: 1110 VGGSGSDQAQR 1120
            VG SGSDQ QR
Sbjct: 1128 VGPSGSDQPQR 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 2014 bits (5219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 980/1148 (85%), Positives = 1054/1148 (91%), Gaps = 43/1148 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAGTSLSHSALKHPRTPPTNPS 299
            PTPAPVPTPLAGWMSNP TV H AVSGG AIGLG+PS+PA       ALKHPRTPPTNPS
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPA-------ALKHPRTPPTNPS 293

Query: 300  VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 359
            VDYPSGDSDH++KRTRP+GISDE+NLPVNVL  +F GH     HSQAF+ P+D+PKTV R
Sbjct: 294  VDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVR 350

Query: 360  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 419
            TLNQGSSPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QA
Sbjct: 351  TLNQGSSPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQA 410

Query: 420  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 479
            ALVKDPGVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AF
Sbjct: 411  ALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAF 470

Query: 480  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
            SHPNKQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDG
Sbjct: 471  SHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDG 530

Query: 540  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 573
            KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                          
Sbjct: 531  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKR 590

Query: 574  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
            TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFN
Sbjct: 591  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFN 650

Query: 634  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAA 692
            KDG LLAVS N+NGIKILA  DGIRLLRT EN  Y+ASR SE  +KPTI+PISAAAAAA 
Sbjct: 651  KDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAAT 710

Query: 693  TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 752
            ++A LA+RA+S+V+I GMNGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LP
Sbjct: 711  SAA-LAERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLP 769

Query: 753  ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812
            EN+R TKISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI
Sbjct: 770  ENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGI 829

Query: 813  MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
            +MTND+ DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLA
Sbjct: 830  LMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 889

Query: 873  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 932
            FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+
Sbjct: 890  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQI 949

Query: 933  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV 992
            CVW++DGWEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +
Sbjct: 950  CVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGL 1009

Query: 993  KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052
            KQW PR+SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA V SS
Sbjct: 1010 KQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASV-SS 1068

Query: 1053 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGG 1112
            N+ PLVIAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT  VG 
Sbjct: 1069 NIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG- 1126

Query: 1113 SGSDQAQR 1120
              SDQAQR
Sbjct: 1127 -PSDQAQR 1133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus]

 Score = 2014 bits (5217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1150 (84%), Positives = 1053/1150 (91%), Gaps = 41/1150 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAGTSLSHSALKHPRTPPTNPS 299
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPA       ALKHPRTPPTNPS
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPA-------ALKHPRTPPTNPS 293

Query: 300  VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 359
            V+YPS DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV R
Sbjct: 294  VEYPSADSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QTFNAPDDLPKTVMR 349

Query: 360  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 419
            TLNQGS+PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQA
Sbjct: 350  TLNQGSNPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQA 409

Query: 420  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 479
            ALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AF
Sbjct: 410  ALVKEPDVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAF 469

Query: 480  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
            S+PNKQLCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDG
Sbjct: 470  SNPNKQLCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDG 529

Query: 540  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 573
            KIKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR                          
Sbjct: 530  KIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKR 589

Query: 574  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
            TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFN
Sbjct: 590  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFN 649

Query: 634  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAA 692
            KDG LLAVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA
Sbjct: 650  KDGTLLAVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAA 709

Query: 693  TSAGLA--DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750
             +A  +  DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLR
Sbjct: 710  AAAAGSAADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLR 769

Query: 751  LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810
            LPEN+R  KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP S
Sbjct: 770  LPENVRVNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSS 829

Query: 811  GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 870
            GI+MTNDV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATF
Sbjct: 830  GILMTNDVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 889

Query: 871  LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
            LAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+
Sbjct: 890  LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADA 949

Query: 931  QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 990
            QLCVWSSD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLE
Sbjct: 950  QLCVWSSDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLE 1009

Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1050
            CVKQW PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS
Sbjct: 1010 CVKQWTPRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVS 1069

Query: 1051 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPV 1110
            +++V PLVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP V
Sbjct: 1070 NASVQPLVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSV 1129

Query: 1111 GGSGSDQAQR 1120
            G SGS+QA R
Sbjct: 1130 GASGSEQAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus]

 Score = 2012 bits (5213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1150 (84%), Positives = 1054/1150 (91%), Gaps = 41/1150 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAGTSLSHSALKHPRTPPTNPS 299
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPA       ALKHPRTPPTNPS
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPA-------ALKHPRTPPTNPS 293

Query: 300  VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 359
            V+YPS DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV R
Sbjct: 294  VEYPSADSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QNFNAPDDLPKTVMR 349

Query: 360  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 419
            TLNQGS+PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQA
Sbjct: 350  TLNQGSNPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQA 409

Query: 420  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 479
            ALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AF
Sbjct: 410  ALVKEPDVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAF 469

Query: 480  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
            S+PNKQLCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDG
Sbjct: 470  SNPNKQLCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDG 529

Query: 540  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 573
            KIKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR                          
Sbjct: 530  KIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKR 589

Query: 574  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
            TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFN
Sbjct: 590  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFN 649

Query: 634  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAA 692
            KDG LLAVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA
Sbjct: 650  KDGTLLAVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAA 709

Query: 693  TSAGLA--DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750
             +A  +  DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLR
Sbjct: 710  AAAAGSAADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLR 769

Query: 751  LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810
            LPEN+R  KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP S
Sbjct: 770  LPENVRVNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSS 829

Query: 811  GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 870
            GI+MTNDV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATF
Sbjct: 830  GILMTNDVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 889

Query: 871  LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
            LAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+
Sbjct: 890  LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADA 949

Query: 931  QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 990
            QLCVWSSD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLE
Sbjct: 950  QLCVWSSDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLE 1009

Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1050
            CVKQW PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS
Sbjct: 1010 CVKQWTPRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVS 1069

Query: 1051 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPV 1110
            +++V PLVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP V
Sbjct: 1070 NASVQPLVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSV 1129

Query: 1111 GGSGSDQAQR 1120
            G SGS+QA R
Sbjct: 1130 GASGSEQAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1999 bits (5179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 974/1148 (84%), Positives = 1034/1148 (90%), Gaps = 61/1148 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IML                  FPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAGTSLSHSALKHPRTPPTNPS 299
            PTPAPVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPA       ALKHPRTPPTNPS
Sbjct: 223  PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPA-------ALKHPRTPPTNPS 275

Query: 300  VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 359
            VDYPSGDSDH++KRTRP+GISDE+NLPVNVLPVSF GH H     Q F+ P+DLPKTV+R
Sbjct: 276  VDYPSGDSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSR 331

Query: 360  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 419
            TLNQGSSPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+  CSMPLQA
Sbjct: 332  TLNQGSSPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQA 391

Query: 420  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 479
            ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AF
Sbjct: 392  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAF 451

Query: 480  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 539
            S PNKQLCVITCGDDKTIKVWDA  G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDG
Sbjct: 452  STPNKQLCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDG 511

Query: 540  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 573
            KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                          
Sbjct: 512  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKR 571

Query: 574  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
            +YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFN
Sbjct: 572  SYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFN 631

Query: 634  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAA 692
            KDG LLAVS N+NGIKILA SDG RLLRTFENL+YDASR SE  +KP I+PISAAAA +A
Sbjct: 632  KDGSLLAVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSA 691

Query: 693  TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 752
              A   DR AS+V+IPGMNGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP
Sbjct: 692  GLA---DRTASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLP 748

Query: 753  ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 812
            +NLR  KISRLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI
Sbjct: 749  DNLRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGI 808

Query: 813  MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
            +MTND+TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLA
Sbjct: 809  LMTNDITDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 868

Query: 873  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 932
            FHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QL
Sbjct: 869  FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQL 928

Query: 933  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV 992
            CVW+SDGWEKQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC 
Sbjct: 929  CVWNSDGWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECT 988

Query: 993  KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052
            KQWV RESSAPI+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSSS
Sbjct: 989  KQWVTRESSAPISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSS 1048

Query: 1053 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGG 1112
             +HPLVIAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG 
Sbjct: 1049 -LHPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGP 1107

Query: 1113 SGSDQAQR 1120
            SGSDQAQR
Sbjct: 1108 SGSDQAQR 1115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1980 bits (5129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 965/1151 (83%), Positives = 1038/1151 (90%), Gaps = 44/1151 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSG-GAIGLGSPSIPAGTSLSHSALKHPRTPPTNPS 299
            P PA VPT LAGWMSNP TV H AVSG GAIGLG+PS+P        ALKHPRTPP NPS
Sbjct: 241  PNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPG-------ALKHPRTPPINPS 293

Query: 300  VDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLP--KTV 357
            VDYPSGDSDH++KRTRP+GI+DE+NLPVNVL  +F GH HS    QAF+ P+DLP  KTV
Sbjct: 294  VDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHS----QAFNAPDDLPLPKTV 349

Query: 358  TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 417
            TRTLNQGSSPMSMDFHPVQQ+LLLVGTNVG I LWEVGSRE+LV RNFKVWDL ACSMP 
Sbjct: 350  TRTLNQGSSPMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPF 409

Query: 418  QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 477
            QAALVKDP VSVNRVIWSPDG+LFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+
Sbjct: 410  QAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDL 469

Query: 478  AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 537
            AFSHPNKQLCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTAL
Sbjct: 470  AFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTAL 529

Query: 538  DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------------------------ 573
            DGKIKAWLYDNLGSRVDY+APGRWCTTMAYSADGTR                        
Sbjct: 530  DGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAV 589

Query: 574  --TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 631
              TYQGFRKRS+GVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIR
Sbjct: 590  KRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIR 649

Query: 632  FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPTISPISAAAAA 690
            FNKDG LLAVS NDNGIKI+A +DGIRLLRT EN + YDASR SE +KPTI+  S ++AA
Sbjct: 650  FNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASEMAKPTIN--SMSSAA 707

Query: 691  AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 750
            AATSA LA+RA+S+ +I GMNGD RS+ DVKPRI+EE+NDKSK+WKLTE++EP+ CRSL+
Sbjct: 708  AATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLK 767

Query: 751  LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810
            LPEN+R  KISRLI+TNSGNAILALASNAIHLLWKW R ERNSSGKA ASV  QLWQP S
Sbjct: 768  LPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSS 827

Query: 811  GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 870
            GI+MTND+ DSNPE++VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATF
Sbjct: 828  GILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 887

Query: 871  LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
            LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+
Sbjct: 888  LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADA 947

Query: 931  QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 990
            Q+CVW++DGWEKQK RFLQ+P GRTP+AQSDTRVQFHQDQI FLVVHETQLAIFE TKLE
Sbjct: 948  QICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLE 1007

Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1050
            C+KQW PR+SSAPI+HATFSCDSQL+YA FLDATVCVF+A+NL+LRCRINP AYLPA VS
Sbjct: 1008 CLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVS 1067

Query: 1051 S-SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPP 1109
            S SNV PLVIAAHP E N+FA+GLSDGGVHVFEPLESEGKWGVPPP +NGS+S+  A   
Sbjct: 1068 SNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSSSNNVAVAT 1127

Query: 1110 VGGSGSDQAQR 1120
              G  SDQAQR
Sbjct: 1128 SVGLSSDQAQR 1138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1977 bits (5122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1147 (83%), Positives = 1036/1147 (90%), Gaps = 38/1147 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFE+ KQKYLEALDKHDR+KAVEILVKDLKVF+TFN+ELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKY DTKSAR+IMLVELKKLIEANPLF DKLQFPNLK+SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYCDTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQ NGA APSPANN LLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
            P+PAPVPTPLAGWMSNP TV HP VSGGAIGLG PSIPA       ALKHPRTPPT PSV
Sbjct: 241  PSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPA-------ALKHPRTPPTYPSV 293

Query: 301  DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 360
            DYPSGDSDH+SKRTRP+G+SDE+NLPVNVL  +F GH H H H QAF+ P+DLPKT  RT
Sbjct: 294  DYPSGDSDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGHGHGQAFNAPDDLPKTAMRT 353

Query: 361  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
            LNQGSSPMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAA
Sbjct: 354  LNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAA 413

Query: 421  LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
            LVKDPGVSV RVIWSPDG+LFGVAYSRHIVQIYSYH GD+V+QHLEIDAHVGGVND+AFS
Sbjct: 414  LVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFS 473

Query: 481  HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
            HPNKQLCVITCGDDKTIKVWDA  GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGK
Sbjct: 474  HPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGK 533

Query: 541  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------T 574
            IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                          T
Sbjct: 534  IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRT 593

Query: 575  YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 634
            YQGFRKRSLG VQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLP SPRIRFNK
Sbjct: 594  YQGFRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNK 653

Query: 635  DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAAT 693
            DG LLAVS  +NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA +
Sbjct: 654  DGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATS 713

Query: 694  SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 753
            +A L +RA S+V I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPE
Sbjct: 714  AA-LGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPE 772

Query: 754  NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 813
            N+R  KISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+ KA+ASV PQLWQP SGI+
Sbjct: 773  NVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSGIL 832

Query: 814  MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 873
            MTND+TDSN E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAA FLAF
Sbjct: 833  MTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAF 892

Query: 874  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 933
            HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+C
Sbjct: 893  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQIC 952

Query: 934  VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 993
            VW++DGWEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+K
Sbjct: 953  VWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLK 1012

Query: 994  QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053
            QW PR+SSAPI+HATFSCDSQL+YA FLDATVCVFS +NL+L+CRINPSAYL A V SSN
Sbjct: 1013 QWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASV-SSN 1071

Query: 1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGS 1113
            V PLVIAAHPQEPN+FA+GLSDGGVHVFEPLESEGKWGVPPP++NGSTS+M AT    G+
Sbjct: 1072 VQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSV--GA 1129

Query: 1114 GSDQAQR 1120
             SD+AQR
Sbjct: 1130 SSDEAQR 1136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1120
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.990	0.980	0.733	0.0
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.981	0.981	0.730	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.485	0.480	0.539	1.1e-270
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.322	0.487	0.371	1.9e-91
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.141	0.298	0.305	4.9e-16
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.141	0.474	0.282	2.7e-12
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.169	0.322	0.246	1.3e-10
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.166	0.355	0.253	2.4e-10
FB|FBgn0036354	391	Poc1 "Proteome of centrioles 1	0.066	0.191	0.307	3.5e-10
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.138	0.082	0.281	3.2e-05

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 4299 (1518.4 bits), Expect = 0., P = 0.
 Identities = 838/1142 (73%), Positives = 926/1142 (81%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
                      LAGWMS+P +V HPAVS GAI LG PSIPA       ALKHPRTPPTN S+
Sbjct:   241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPA-------ALKHPRTPPTNASL 293

Query:   301 DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRT 360
             DYPS DS+H+SKRTRP+GISDE+NL VN+LP+SF+G         AF  P+DLPKTV RT
Sbjct:   294 DYPSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVART 351

Query:   361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
             L+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAA
Sbjct:   352 LSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAA 411

Query:   421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
             LVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS
Sbjct:   412 LVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFS 471

Query:   481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
              PNKQLCVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGK
Sbjct:   472 TPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGK 531

Query:   541 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLG-VVQFDTTKNRFLAA 598
             IKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR +  G  K     +V+++ ++      
Sbjct:   532 IKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRT 591

Query:   599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGC-LLAVSTNDNGIK------- 649
                F  +   +  VQ  T+ +          I+F + D   LL     D G++       
Sbjct:   592 YQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRF 649

Query:   650 -----ILATSDGIRLLRTFEN-----LAYDASR-TSENSKPTISPIXXXXXXXXXXXXXX 698
                  +LA S    +++   N     L +     +SE+SKP I+ I              
Sbjct:   650 NKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHA 709

Query:   699 XXXXXMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 758
                  +VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR  
Sbjct:   710 DRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVA 769

Query:   759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 818
             KISRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV
Sbjct:   770 KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDV 829

Query:   819 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDN 878
              ++NPEEAVPCFALSKNDSYVMSASGGKISLFN                      HPQDN
Sbjct:   830 AETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 889

Query:   879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 938
             NIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++D
Sbjct:   890 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTD 949

Query:   939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 998
             GWEKQ+++ L +P GR  +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW  R
Sbjct:   950 GWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVR 1009

Query:   999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1058
             ES APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLV
Sbjct:  1010 ESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1069

Query:  1059 IAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQA 1118
             IAAHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S  P  P VG S SDQ 
Sbjct:  1070 IAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQP 1129

Query:  1119 QR 1120
             QR
Sbjct:  1130 QR 1131

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 4245 (1499.4 bits), Expect = 0., P = 0.
 Identities = 834/1141 (73%), Positives = 927/1141 (81%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSV 300
                      LAGWMS+P +V HPAVSGG I LG+PSI A       ALKHPRTPP+N +V
Sbjct:   241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQA-------ALKHPRTPPSNSAV 293

Query:   301 DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRT 360
             DYPSGDSDH+SKRTRP+GISDE++L VN+LP++F G        Q F  P+DLPKTV RT
Sbjct:   294 DYPSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVART 351

Query:   361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA 420
             L+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAA
Sbjct:   352 LSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAA 411

Query:   421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 480
             LVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS
Sbjct:   412 LVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFS 471

Query:   481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 540
              PNKQLCV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGK
Sbjct:   472 TPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGK 531

Query:   541 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLG-VVQFDTTKNRFLAA 598
             IKAWLYDN+GSRVDYEAPGRWCTTMAYSADGTR +  G  K     +V+++ ++      
Sbjct:   532 IKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRT 591

Query:   599 GDDF---SIKFWDMDSVQ---LLTSIDADGGLPASPRIRF----NKDGCLLA---VSTND 645
                F   S+     D+ +   L    D          I+     + DG L A   +  N 
Sbjct:   592 YQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNK 651

Query:   646 NGIKILATSDGIRLLRTFEN-----LAYDASR-TSENSKPTISPIXXXXXXXXXXXXXXX 699
              G  +LA S    +++   N     L +     +SE+SKP I+ I               
Sbjct:   652 EG-SLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPAS------- 703

Query:   700 XXXXMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 759
                 +VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TK
Sbjct:   704 ----VVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTK 759

Query:   760 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819
             ISRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV 
Sbjct:   760 ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVA 819

Query:   820 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNN 879
             ++NPEEAVPCFALSKNDSYVMSASGGKISLFN                      HPQDNN
Sbjct:   820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query:   880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 939
             IIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DG
Sbjct:   880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query:   940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 999
             WEKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RE
Sbjct:   940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRE 999

Query:  1000 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059
             S+APITHATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S+SNVHPLVI
Sbjct:  1000 SAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVI 1059

Query:  1060 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1119
             AAHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ Q
Sbjct:  1060 AAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQ 1119

Query:  1120 R 1120
             R
Sbjct:  1120 R 1120

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1485 (527.8 bits), Expect = 1.1e-270, Sum P(3) = 1.1e-270
 Identities = 300/556 (53%), Positives = 381/556 (68%)

Query:   573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 632
             RTY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RF
Sbjct:   580 RTYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRF 639

Query:   633 NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXX 692
             NKDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K + S +        
Sbjct:   640 NKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAI 699

Query:   693 XXXXXXXXXXXMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 751
                            P  NG +  S    KPR   +S DKSK  +LTE+ +P QCR + +
Sbjct:   700 GKIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTM 758

Query:   752 PENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 810
             P++  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQP S
Sbjct:   759 PDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNS 818

Query:   811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXX 870
             G++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFN                   
Sbjct:   819 GLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTF 877

Query:   871 XXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 930
                HPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+
Sbjct:   878 LAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADA 937

Query:   931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 990
             QL  W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+E
Sbjct:   938 QLFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKME 995

Query:   991 CVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049
             C+ +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P   
Sbjct:   996 CIHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPT 1055

Query:  1050 -SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDN---GSTSSMP 1105
              +S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV     +   G+ +  P
Sbjct:  1056 PNSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRP 1115

Query:  1106 ATPPVGG-SGSDQAQR 1120
             ++      S SDQ QR
Sbjct:  1116 SSSSAANNSSSDQIQR 1131

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
 Identities = 139/374 (37%), Positives = 205/374 (54%)

Query:   736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 795
             K  E+ +P+QC +L LP+     KI+RL ++ SG+ ILALA +A H LW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 855
             K      P+L QP SG  M N++  S  +++  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   856 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 915
                                P D  ++A+G+DD SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   916 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 972
             FS   NVLVSS +D +LC+WS+  W K   KN   +        + S  T +QF   QI 
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   973 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032
              LVVH+  + ++E   L+C  QW+P  S   IT AT+S D +++Y  F   ++ +  +  
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661

Query:  1033 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090
                 C+IN +++     S  S  V+P V+AAHP  PN+ + GLS+G V V +PL S G W
Sbjct:   662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720

Query:  1091 GVPPPV-DNGSTSS 1103
             G   P+ DNG  S+
Sbjct:   721 GEAAPLEDNGDYSN 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 4.9e-16, Sum P(3) = 4.9e-16
 Identities = 58/190 (30%), Positives = 90/190 (47%)

Query:     5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KYFEDEVHNGNWDDVEKYLSGF 60
             S++++ LILQFL E     ++  L++E+G   N     + F ++V NGNWD V       
Sbjct:    16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             T V   R S  +  ++ +Q  +E L  H   K  E+    ++     N     +  + L 
Sbjct:    70 TVVSTLRLSTTLLMDLYEQ-IVELL--H--LKEYELCKYLIRKTEPLNYMKLNQQERYLK 124

Query:   121 LENFRENEQLS-----KYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLI 175
             LEN  + E +      KYG T   R       K+LIE   L  + +  P+   SRL +L+
Sbjct:   125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173

Query:   176 NQSLNWQ-HQ 184
             +QSL+WQ HQ
Sbjct:   174 SQSLHWQKHQ 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 48/170 (28%), Positives = 83/170 (48%)

Query:   428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
             S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct:    48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query:   488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
               +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct:   105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query:   548 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 596
             N G       A     T + ++ DGT    G    ++ +  +DTT  + L
Sbjct:   160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
 Identities = 50/203 (24%), Positives = 90/203 (44%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKV 63
             E V +I + L    + +T   LE+ESG   +   +K F  +V +G WD   K L      
Sbjct:    67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126

Query:    64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN 123
             D+       F  + +QK+LE L     A A+  L  ++       + + +  + L++  +
Sbjct:   127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185

Query:   124 FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183
             F  +   +   ++ ++RS +L EL+ L+ A+ +  +K         RL  L+  SL+ Q 
Sbjct:   186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHIQR 236

Query:   184 QLCKNPRPNPDIKTLFVDHTCGQ 206
               C          +L+ DH CG+
Sbjct:   237 DSCVFHNTLDSDLSLYSDHQCGK 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.4e-10, Sum P(3) = 2.4e-10
 Identities = 52/205 (25%), Positives = 90/205 (43%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKYFEDEVHNGNWDDVEKYLSGF--T 61
             E + +++Q L    FK +   LE ES   +   + ++ E +V +GNWD   + L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121
              +DD R +    + + KQ  LE L + D + A+ +L K   +     E++ +    ++  
Sbjct:    79 SMDDTRNTA--LYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNW 181
             +     E  +        R  +LVEL+KLI   PL    +  P     RL  L+  ++  
Sbjct:   137 KEMESGEVDNCL--VLDLRRKLLVELEKLI---PL---PIVIPE---RRLEHLVETAVMD 185

Query:   182 QHQLCKNPRPNPDIKTLFVDHTCGQ 206
             Q   C     + D  +L+ DH CG+
Sbjct:   186 QIDTCMYHN-SCDAVSLYKDHCCGR 209

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query:   586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
             V FD+T +  L A DD S K W +   Q ++S         S +  F+ +G L+A +++D
Sbjct:   108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165

Query:   646 NGIKILATSDGIRLLRTF 663
               ++I     G   +RTF
Sbjct:   166 KSVRIYDVDSG-ECVRTF 182

GO:0051297 "centrosome organization" evidence=IMP

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 146 (56.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
 Identities = 47/167 (28%), Positives = 79/167 (47%)

Query:   403 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 462
             R  K+W   A +  LQ  L +     V  V++S D  L   A     V+I+       ++
Sbjct:   453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508

Query:   463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522
              +LE  +H   V  + FSH ++ L   +  DD T+K+WD   G+ +   EGH+  V SV 
Sbjct:   509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564

Query:   523 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 568
                  + + + S + DG +K W Y   G+ +  ++  GR   ++A+S
Sbjct:   565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.8106	0.9767	0.9767	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.8254	0.9866	0.9770	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_440031 hypothetical protein (1172 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1120
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-10
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (257), Expect = 8e-24
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            V  V +SPDG L         ++++    G+ +R  L+   H G V D+A S     L 
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
             +   DKTI++WD   G       GH + V SV      + + + S++ D  IK W  +
Sbjct: 67  -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123

Query: 548 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 585
                        W  ++A+          S DGT             T  G        
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182

Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
           V F     + L++  D +IK WD+ + + L ++        S  + F+ DG LLA  + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240

Query: 646 NGIKI 650
             I++
Sbjct: 241 GTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 6e-23
 Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)

Query: 368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 427
             + F P  + L               GS +  +    KVWDL    +      +K    
Sbjct: 13  TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 466
            V  V  S DG+      S   ++++    G+ VR    H                    
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 467 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 508
                             +  H   VN +AFS       V +   D TIK+WD   G   
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Query: 509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 568
               GH   V SV          + S++ DG IK W                   ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 569 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 627
            DG                        LA+G  D +I+ WD+ + + + ++        +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262

Query: 628 P--RIRFNKDGCLLAVSTNDNGIKI 650
               + ++ DG  LA  + D  I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)

Query: 324 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 366
           +L    L  +  GH+        S   +   S   D  KT+           RTL   +S
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94

Query: 367 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 425
              S+ F P    +L   +    I +W+V + +              C   L+     D 
Sbjct: 95  YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137

Query: 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 485
              VN V +SPDG+    +     ++++    G  V        H G VN +AFS   ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191

Query: 486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 545
           L   +   D TIK+WD + G       GHE  V SV       +  + S + DG I+ W 
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247

Query: 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 605
                            T++A+S DG                      R  +   D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286

Query: 606 FWD 608
            WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 55/467 (11%)

Query: 333 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 391
             +  S     +    +   LP   +  L        S+ F P  + LLL G++ G I L
Sbjct: 33  LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91

Query: 392 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 450
           W++ + E+L+                  +L      SV+++   SPDG+   +A S    
Sbjct: 92  WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 451 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 510
            +  +      +    ++ H   V  +AFS P+ +L       D TIK+WD   G     
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570
             GH  PV S+       +  I S + DG I+ W              G+   +      
Sbjct: 194 LAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLST----------GKLLRS------ 236

Query: 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 630
              T  G     +    F    +   +   D +I+ WD+ S   L    +         +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290

Query: 631 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 690
            F+ DG LLA  ++D  +++     G +LL +     ++   +S +  P  S + +  + 
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 691 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 747
             T      R    +     + +V S++       ++  S D + ++W L+  S      
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 748 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 794
                       ++ L F+  G ++ + +S+    LW  + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 521
              +  H GGV  +AF  P+ +L + T   D TIKVWD   G      +GH  PV  V  
Sbjct: 2   RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581
                    ++ S + D  I+ W         D E                RT  G    
Sbjct: 60  SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95

Query: 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641
               V F        ++  D +IK WD+++ + LT++        S  + F+ DG  +A 
Sbjct: 96  VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152

Query: 642 STNDNGIKILATSDGIRLLRTFE 664
           S+ D  IK+     G + + T  
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 34 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 92
           F   K   + +  G+WD+  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 827  VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885
            V C A S +   + + SG G I ++++ T + + T          +A    D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 886  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 945
             D +I+++++   E    L GH+  ++ +AFS    +L SS  D  + VW          
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121

Query: 946  RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 1001
                       T +  T ++ H D ++ +        +  +++   +K W  R       
Sbjct: 122  ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 1002 -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035
                   +    FS D + + +   D T+ ++  +  K 
Sbjct: 173  LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 869  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 928
            T +AF P D  ++A G  D +I+++++   E+   LKGH+  +  +A S     L S  +
Sbjct: 13   TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 929  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 986
            D  + +W       +    ++  TG T    S   V F  D    L     +  + +++ 
Sbjct: 72   DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122

Query: 987  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036
               +C+     R  +  +    FS D   V +   D T+ ++     K  
Sbjct: 123  ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 71.7 bits (174), Expect = 9e-13
 Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)

Query: 460 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 517
                L +  H   +  IAFS   + L   +   D TIK+WD  NG K    +   H++ 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 518 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 575
           V  +     + N   + S++LDG +K W     G  +   E      T++A+S DG    
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167

Query: 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635
                           K     +  D +IK WD+ + + L+++                 
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200

Query: 636 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 695
              LA S +   +    +SDG   L          S  S +S   +S  S          
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250

Query: 696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 755
                          +G +          +  S+   ++W L   S   +  S       
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284

Query: 756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 815
             + +  + F+  G  + + +S+    LW       +       S               
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321

Query: 816 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 873
             +T    E  V   + S + S ++S     G I L+++ T K + T          ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 933
            P D  +++ G  D +++++++    +   L GH+ R+T L FS     L S  +D+ + 
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 934 VWSSDGWEKQKN 945
           +W      K  +
Sbjct: 438 LWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 824 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 882
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 883 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            G +D +I+++++R  E    L GH+  +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 804  QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 862
            ++W   +G ++    T       V   A S + +Y+ S S    I L+++ T + + T  
Sbjct: 34   KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 863  PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 922
                  + +AF P D  I++    D +I++++V   +  + L+GH+  +  +AFS     
Sbjct: 91   GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 923  LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 981
            + SS  D  + +W     +          TG T    S   V F  D    L    +  +
Sbjct: 150  VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201

Query: 982  AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039
             +++ +  +C+     R     +    FS D  L+ +   D T+ V+     +    +
Sbjct: 202  KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 403
            K ++          S+ F P    L+  G++ G I LW    G   R  L         
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 404 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 447
                             ++WDL + S  L+   +     SV  V +SPDG L     S 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 448 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507
             V+++    G  +   L +  H G V+ ++FS P+  L V    DD TI++WD   G  
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 567
               EGH   V SV       +    ST  DG ++ W         + +      T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 627
           S DG                         +   D +I+ WD+ +     S   DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 628 PRI 630
              
Sbjct: 460 KSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)

Query: 805  LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 860
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 861  FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 920
                  + T LAF P    + +    D +I+++++R  +  S L GH+  ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 921  N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 979
              ++ S  +D  + +W      K     L   +    ++       F  D          
Sbjct: 211  GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262

Query: 980  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039
                    +            S+ +    FS D +L+ +   D TV ++     KL   +
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1099
                +    VSS       ++  P      + G  DG + +++    +    +    +  
Sbjct: 323  TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 1100 STSSMPATPPVGGSGSDQ 1117
            S S  P    V    +D 
Sbjct: 375  SVSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
             EL  LIL++L    ++ET   L++ESG 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 904  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 963
            LKGH+  +T +AFS    +L +   D  + VW  +  E    R L+  TG          
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56

Query: 964  VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1022
            V    D  +         + +++    ECV+      S   ++   FS D +++ +   D
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114

Query: 1023 ATVCVFSAANLKLR 1036
             T+ V+     K  
Sbjct: 115  KTIKVWDVETGKCL 128

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501
            +  H G V  +AFS     L   +  DD T++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
           E+   LKGH+  +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501
            +  H G V  +AFS   K L   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
           ++   LKGH+  +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 35  FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90
           F       + + NG+ ++  ++         K++ N     + FE+R Q+++E + +   
Sbjct: 2   FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56

Query: 91  AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135
            +A+E   ++L  F  FNE+  KEI +L+ L  F +    S Y  
Sbjct: 57  LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 347 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 406
           +        +            S+ F P    L+  G++ G I LW++ + + L      
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369

Query: 407 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 466
                                +V  V +SPDG +     +   V+++    G  +R    
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407

Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 511
           +D H   V  + FS       + +   D TI++WD     K   F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1120
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
PTZ00420	568	coronin; Provisional	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
PTZ00420	568	coronin; Provisional	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG0267	825	consensus Microtubule severing protein katanin p80	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG1334	559	consensus WD40 repeat protein [General function pr	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.68
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.62
COG4946	668	Uncharacterized protein related to the periplasmic	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
KOG1310	758	consensus WD40 repeat protein [General function pr	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG2321	703	consensus WD40 repeat protein [General function pr	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.42
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.37
PRK04922	433	tolB translocation protein TolB; Provisional	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
KOG2314	698	consensus Translation initiation factor 3, subunit	99.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.25
PRK01029	428	tolB translocation protein TolB; Provisional	99.23
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.22
PRK00178	430	tolB translocation protein TolB; Provisional	99.21
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.17
KOG4547	541	consensus WD40 repeat-containing protein [General	99.17
KOG2314	698	consensus Translation initiation factor 3, subunit	99.17
KOG4547	541	consensus WD40 repeat-containing protein [General	99.16
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.1
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
PRK04792	448	tolB translocation protein TolB; Provisional	99.07
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.99
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.97
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.86
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.83
PRK04043	419	tolB translocation protein TolB; Provisional	98.78
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.67
PRK04043	419	tolB translocation protein TolB; Provisional	98.67
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.64
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.64
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.63
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.53
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.48
KOG2695	425	consensus WD40 repeat protein [General function pr	98.47
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.47
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.47
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.46
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.42
KOG2695	425	consensus WD40 repeat protein [General function pr	98.39
PRK02888	635	nitrous-oxide reductase; Validated	98.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.38
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.33
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.32
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.29
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.2
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.16
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.0
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.99
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.99
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.96
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.93
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
KOG3621	726	consensus WD40 repeat-containing protein [General	97.92
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.88
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.77
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.77
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.77
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.74
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.7
COG3391	381	Uncharacterized conserved protein [Function unknow	97.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.67
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.65
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
PRK13616	591	lipoprotein LpqB; Provisional	97.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.56
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.54
COG3391	381	Uncharacterized conserved protein [Function unknow	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.51
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.4
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.37
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.36
PRK13616	591	lipoprotein LpqB; Provisional	97.29
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.07
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.07
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.05
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.05
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.03
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.99
KOG2395	644	consensus Protein involved in vacuole import and d	96.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.68
KOG2395	644	consensus Protein involved in vacuole import and d	96.53
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.51
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.42
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.4
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.33
PHA02713	557	hypothetical protein; Provisional	96.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.23
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.22
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.21
PRK10115	686	protease 2; Provisional	96.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.19
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.17
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.02
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.95
KOG2444	238	consensus WD40 repeat protein [General function pr	95.89
PHA02713	557	hypothetical protein; Provisional	95.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.84
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.74
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.59
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.57
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.45
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.35
PRK10115	686	protease 2; Provisional	95.31
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.2
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.19
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.09
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	95.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.94
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	94.9
KOG2444	238	consensus WD40 repeat protein [General function pr	94.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.61
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.42
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.39
PRK13684	334	Ycf48-like protein; Provisional	94.34
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.3
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.22
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.21
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.98
PHA03098	534	kelch-like protein; Provisional	93.86
PHA03098	534	kelch-like protein; Provisional	93.63
PHA02790	480	Kelch-like protein; Provisional	93.59
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.97
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.86
PRK13684	334	Ycf48-like protein; Provisional	92.82
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.79
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.5
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.3
KOG2247	615	consensus WD40 repeat-containing protein [General	92.2
COG5167	776	VID27 Protein involved in vacuole import and degra	92.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.57
PHA02790	480	Kelch-like protein; Provisional	91.41
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.15
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.6
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.37
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.13
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.1
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.06
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.86
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.24
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.76
KOG2247	615	consensus WD40 repeat-containing protein [General	88.41
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	87.99
COG4590	733	ABC-type uncharacterized transport system, permeas	87.71
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.53
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.46
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	87.44
COG4590	733	ABC-type uncharacterized transport system, permeas	87.3
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.26
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.1
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	87.09
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.69
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.53
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.12
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.01
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.93
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.53
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.43
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.9
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.85
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.49
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.69
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.37
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.04
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	82.3
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.29
COG5276	370	Uncharacterized conserved protein [Function unknow	82.12
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.05
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.99
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.7
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	81.66
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.45
PRK13613	599	lipoprotein LpqB; Provisional	80.31
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.17

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-67  Score=522.72  Aligned_cols=490  Identities=22%  Similarity=0.343  Sum_probs=397.6

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHH
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   81 (1120)
                      +-|++|++.|+|+++||.+|+.+||.|+|+.+.   .+.|.+.++.|+|++++..+..+. .+++....++.|++++|+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999885   899999999999999999999884 3334445669999999999


Q ss_pred             HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccc-ccchhhhccCCCchHHHHHHHHHHHhhcccCCCcccc
Q 001224           82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN-FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK  160 (1120)
Q Consensus        82 lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~  160 (1120)
                      ||++..|...+|+.+||++..++.. +.+++++|+.-|..++ +..++..- -......|.+|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            9999999999999999999999886 8999999988766543 33333321 112567899999999999999999    


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001224          161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ  240 (1120)
Q Consensus       161 ~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (1120)
                           +|++||+.||+||++||+++|.||| +.+..|||.||+|++               .++|               
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip---------------  213 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP---------------  213 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence                 9999999999999999999999999 577799999999999               4444               


Q ss_pred             CCCCCCCCcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCCCCc
Q 001224          241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGIS  320 (1120)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~  320 (1120)
                                                       .++                                            
T Consensus       214 ---------------------------------~qt--------------------------------------------  216 (519)
T KOG0293|consen  214 ---------------------------------SQT--------------------------------------------  216 (519)
T ss_pred             ---------------------------------chh--------------------------------------------
Confidence                                             000                                            


Q ss_pred             cccccccccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCcee
Q 001224          321 DEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL  400 (1120)
Q Consensus       321 ~~v~~~v~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~  400 (1120)
                               |                                                                      
T Consensus       217 ---------~----------------------------------------------------------------------  217 (519)
T KOG0293|consen  217 ---------W----------------------------------------------------------------------  217 (519)
T ss_pred             ---------h----------------------------------------------------------------------
Confidence                     0                                                                      


Q ss_pred             EeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224          401 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  480 (1120)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  480 (1120)
                                         +++..|++.|+-+.||++|+|||+++.|.+..||.+.....++..+++.+|..+|..+.||
T Consensus       218 -------------------qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS  278 (519)
T KOG0293|consen  218 -------------------QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS  278 (519)
T ss_pred             -------------------hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC
Confidence                               0234466666666666667777777777777777666555566667899999999999999


Q ss_pred             CCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224          481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  559 (1120)
Q Consensus       481 ~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  559 (1120)
                      ||++  ++++|+.|..+++||+.+|.+...+. +|...+.+++|.|  ||..+++|+.|+++..||++....        
T Consensus       279 PDdr--yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~--------  346 (519)
T KOG0293|consen  279 PDDR--YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL--------  346 (519)
T ss_pred             CCCC--eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh--------
Confidence            9999  79999999999999999999988775 3567888999864  557899999999999999875331        


Q ss_pred             CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE
Q 001224          560 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  639 (1120)
Q Consensus       560 ~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  639 (1120)
                                   ..+.|.+...+..+++++||+++++.+.|..|++++..+.........+.   .|++++.|.|++++
T Consensus       347 -------------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~  410 (519)
T KOG0293|consen  347 -------------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLA  410 (519)
T ss_pred             -------------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEE
Confidence                         22233333456666666777789999999999999998877665554433   59999999999999


Q ss_pred             EEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCC
Q 001224          640 AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLAD  719 (1120)
Q Consensus       640 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  719 (1120)
                      ++.-.+..+++||+... ..++.+.||...                                                  
T Consensus       411 LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~--------------------------------------------------  439 (519)
T KOG0293|consen  411 LVNLQDQEIHLWDLEEN-KLVRKYFGHKQG--------------------------------------------------  439 (519)
T ss_pred             EEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------------
Confidence            99999999999999865 566666554321                                                  


Q ss_pred             CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccc
Q 001224          720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA  799 (1120)
Q Consensus       720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  799 (1120)
                                                                        .+++-                         
T Consensus       440 --------------------------------------------------~fiIr-------------------------  444 (519)
T KOG0293|consen  440 --------------------------------------------------HFIIR-------------------------  444 (519)
T ss_pred             --------------------------------------------------ceEEE-------------------------
Confidence                                                              11110                         


Q ss_pred             ccCceeecCCCCCcccccCCCCCCCCCccEEEEc-cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCC
Q 001224          800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD  877 (1120)
Q Consensus       800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d  877 (1120)
                                                    -||. .+..++++|+ |+.|+||+..+++++.++.+|...|+||+|+|.+
T Consensus       445 ------------------------------SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  445 ------------------------------SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             ------------------------------eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence                                          1111 2457899999 9999999999999999999999999999999999


Q ss_pred             CcEEEEEeCCCcEEEEEee
Q 001224          878 NNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~  896 (1120)
                      ..++|+|++||+||||...
T Consensus       495 p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             HHHhhccCCCCeEEEecCC
Confidence            9999999999999999765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.1e-60  Score=459.44  Aligned_cols=490  Identities=21%  Similarity=0.323  Sum_probs=402.9

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHH
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK   80 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (1120)
                      ..+|||||.|||+|+.++.+.++||+|+++++|    ++.|-+.|.+|+||.++..+++|      +++.+-+..||+|.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence            358999999999999999999999999999998    88999999999999999999999      44455778999999


Q ss_pred             HHHHHccCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhccccccchhhhccCCCchHH-HHHHHHHHHhhcccCCCc
Q 001224           81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSA-RSIMLVELKKLIEANPLF  157 (1120)
Q Consensus        81 ~lEll~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~-R~~l~~~l~~~i~~~~~~  157 (1120)
                      .|||+|.++...|..+||..  +.-|+..++++|-+|..||..+.+++.+.+.+  ..++. |..+.+.|...+.-    
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa~IAQ~ls~EV~V----  154 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRAVIAQALSGEVHV----  154 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHHHHHHHhcCceEE----
Confidence            99999999999999999963  44456678999999999999999999999775  33444 45555555544443    


Q ss_pred             ccccCCCCCcchHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCC
Q 001224          158 RDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHG  237 (1120)
Q Consensus       158 ~~~~~~~~~p~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1120)
                              +||+||..||.||++||+.+                                    |.+      ||++..+
T Consensus       155 --------VppSRLlaLlGQaLKWQqHQ------------------------------------GLL------PPGt~iD  184 (508)
T KOG0275|consen  155 --------VPPSRLLALLGQALKWQQHQ------------------------------------GLL------PPGTTID  184 (508)
T ss_pred             --------cChHHHHHHHHHHhhhHhhc------------------------------------CCC------CCCceee
Confidence                    89999999999999999984                                    344      4778888


Q ss_pred             CCCCCCCCCCCcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCC
Q 001224          238 PFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPI  317 (1120)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  317 (1120)
                      +|++..+         ++..++.++|+...+.|+|++++.++                                      
T Consensus       185 LFRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~E--------------------------------------  217 (508)
T KOG0275|consen  185 LFRGKAA---------MKDQEEERYPTQLARSIKFGQKSHVE--------------------------------------  217 (508)
T ss_pred             eccchhh---------hhhhHhhhchHHhhhheecccccchh--------------------------------------
Confidence            9999865         45667777777777777777776654                                      


Q ss_pred             CCccccccccccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC
Q 001224          318 GISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR  397 (1120)
Q Consensus       318 g~~~~v~~~v~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~  397 (1120)
                                                                         |..|||||+| |++|+.||.|.|||..+|
T Consensus       218 ---------------------------------------------------cA~FSPDgqy-LvsgSvDGFiEVWny~~G  245 (508)
T KOG0275|consen  218 ---------------------------------------------------CARFSPDGQY-LVSGSVDGFIEVWNYTTG  245 (508)
T ss_pred             ---------------------------------------------------heeeCCCCce-Eeeccccceeeeehhccc
Confidence                                                               4568889995 999999999999999999


Q ss_pred             ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeec-ccccCeEE
Q 001224          398 ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVND  476 (1120)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~  476 (1120)
                      +......++.          + ..+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++   .+. .|+..|+|
T Consensus       246 KlrKDLkYQA----------q-d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~  311 (508)
T KOG0275|consen  246 KLRKDLKYQA----------Q-DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTC  311 (508)
T ss_pred             hhhhhhhhhh----------h-cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeE
Confidence            8764322111          1 1244578899999999999999999999999999999999987   454 89999999


Q ss_pred             EEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee
Q 001224          477 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  556 (1120)
Q Consensus       477 v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  556 (1120)
                      +.||.|+.+  +++++.|.++++.-+.+|++++.++||...|+...|  .++|+.+++++.||+|++|+..+.++..++.
T Consensus       312 l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk  387 (508)
T KOG0275|consen  312 LSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFK  387 (508)
T ss_pred             EEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence            999999995  999999999999999999999999999999999887  4667899999999999999999999888776


Q ss_pred             CCC--CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC-CCCCCcCeEEEc
Q 001224          557 APG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFN  633 (1120)
Q Consensus       557 ~~~--~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s  633 (1120)
                      ..+  ..|.++..-|...                    ..++++...++|+|.++ .|+.+.++... ...+...++..|
T Consensus       388 ~~~~d~~vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lS  446 (508)
T KOG0275|consen  388 PLGTDYPVNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILS  446 (508)
T ss_pred             CCCCcccceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEec
Confidence            543  3455555544443                    67899999999999998 57777777532 223456778999


Q ss_pred             CCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCc
Q 001224          634 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD  713 (1120)
Q Consensus       634 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (1120)
                      |.|.++.+.+.|+.++.+...+| .+.+.+.-|...+.                                         .
T Consensus       447 pkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvI-----------------------------------------G  484 (508)
T KOG0275|consen  447 PKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVI-----------------------------------------G  484 (508)
T ss_pred             CCCcEEEEEccCcEEEEEEeecC-ceeeeeeccccccc-----------------------------------------c
Confidence            99999999999999999999988 66666655554433                                         1


Q ss_pred             ccccCCCcceeeccCCCcceeee
Q 001224          714 VRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       714 ~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                      ....|..+.+++.+.||.+++|.
T Consensus       485 l~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  485 LTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccCcccchhhhhcccchhhhcC
Confidence            23345678899999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-56  Score=477.17  Aligned_cols=573  Identities=15%  Similarity=0.232  Sum_probs=473.0

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCcee-EeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      ++|+++|+. |++... ..|.+-|+.++... ..                  .-.+....|++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999995 776553 46889999998863 21                  1334567899999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC
Q 001224          449 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  527 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  527 (1120)
                      .+++|++.+++.++   .+.. |.++|.-++|+|.+.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.+++|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998776   5666 999999999999996  89999999999999999999999999999999999999998


Q ss_pred             CceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEE
Q 001224          528 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  606 (1120)
Q Consensus       528 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  606 (1120)
                      +...|++|+.|+++++||+.+... ...+..|...|+++++++|+.                     .+++++.|..+.+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV  218 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence            888899999999999999996554 677788888888888888865                     6999999999999


Q ss_pred             EECCCCceeEEEecCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224          607 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  681 (1120)
Q Consensus       607 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1120)
                      ||+.+.+...+++....   +-++.+-++     |.++++.+.+|.+++||..++....+.-+.....           +
T Consensus       219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e-----------~  284 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE-----------I  284 (775)
T ss_pred             eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh-----------h
Confidence            99988877777765443   566777776     6799999999999999998883333222111000           0


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224          682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  761 (1120)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  761 (1120)
                                                   . ..........++....+..+.++|.++.....++       .+....|.
T Consensus       285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~  327 (775)
T KOG0319|consen  285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL  327 (775)
T ss_pred             -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence                                         0 1111223455666777889999988775544443       34678888


Q ss_pred             EEEE-cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE
Q 001224          762 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  840 (1120)
Q Consensus       762 ~l~~-s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  840 (1120)
                      .+.| .|+.+.++++++.+.+++|++.+...                      .  .+.  +|...|.++....+|-+|+
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~--GH~e~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIP--GHTEAVLSLDVWSSGDLLA  381 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEe--CchhheeeeeecccCcEEE
Confidence            8887 46778899999999999997633211                      1  133  3999999999888889999


Q ss_pred             EEe-CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee---------eEeecc
Q 001224          841 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKG  906 (1120)
Q Consensus       841 ~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---------~~~l~~  906 (1120)
                      +|+ |.++++|.++.+    -++....+|...|.+++++.....+|++++.|+++++|++...+.         ..+...
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            999 999999988433    345667899999999999986678999999999999999976221         123457


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  985 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d  985 (1120)
                      |...|++++++|+.+++||||.|++.+||+++.     ......+.||..   .|.++.|+|..+.+++ +.|++|+||.
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence            999999999999999999999999999999995     456778889886   8999999999999999 5999999999


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      +.+..|++++.  ||...|..+.|-.+|+.|++++.||.+++|++.+++.++.+.       .|.+. |+  +++-+| +
T Consensus       534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~  600 (775)
T KOG0319|consen  534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L  600 (775)
T ss_pred             eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence            99999999987  999999999999999999999999999999999999999887       54444 88  778888 4


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q 001224         1066 PNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      ...++||+.||.|.+|.=.+.
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             cceeEecCCCeEEEEeecCcH
Confidence            679999999999999985543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.5e-56  Score=474.42  Aligned_cols=546  Identities=14%  Similarity=0.204  Sum_probs=452.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-CCCceEEEEEcCCCCeE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l  441 (1120)
                      ..+.+++++.+||+++ |++++....+++|++.+++.+..                   .+. |++||.-++|+|.|..|
T Consensus        61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll  120 (775)
T KOG0319|consen   61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL  120 (775)
T ss_pred             chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence            5689999999999995 88999999999999999977652                   444 99999999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeeccccCeEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS  520 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~~v~~  520 (1120)
                      |+|+.|+.|+|||+..+.+..   .|+||.+.|.++.|.|+-.+.+|++|+.|+++++||+.++. |+.++..|.+.|++
T Consensus       121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            999999999999999988665   79999999999999999887789999999999999999554 58888999999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      +.|.++  +..+++++.|..+.+||+...+...+++.. ..+.++.+-+++.                ...+.++++++.
T Consensus       198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~  258 (775)
T KOG0319|consen  198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG  258 (775)
T ss_pred             eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence            998654  678999999999999999665555444332 2344444444311                001458999999


Q ss_pred             CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      +|.+++||.++++++....... ...+..+...+....++..+.|..+.++|..+. .+.+.+-|..+.+.        .
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D  328 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D  328 (775)
T ss_pred             CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence            9999999999998877665432 223666666666666777788899999998888 77788877777654        3


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  760 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  760 (1120)
                      ....+                                ++...+++++..+.+++|++.+..    +..+    .+|...|
T Consensus       329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~----c~ii----~GH~e~v  368 (775)
T KOG0319|consen  329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSY----CQII----PGHTEAV  368 (775)
T ss_pred             eeecC--------------------------------CccceEEEEeCCCceEEEecCCCc----eEEE----eCchhhe
Confidence            33333                                677899999999999999877643    2222    5699999


Q ss_pred             EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEE
Q 001224          761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV  839 (1120)
Q Consensus       761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l  839 (1120)
                      .++....+|..+++++.|..+++|.++.+...                   ....  -...+|.+.|.+++++..+ .++
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------------~~~~--a~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------------SLCV--AQANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcch-------------------hhhh--hhhcccccccceeeecccCccEE
Confidence            99998888889999999999999988322111                   0111  1123499999999998655 578


Q ss_pred             EEEe-CCcEEEEEcCCCce-----e----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224          840 MSAS-GGKISLFNMMTFKT-----M----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       840 ~~~s-dg~i~vwd~~~~~~-----~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      ++++ |+++++|++...+.     .    .+...|...|+|++++| +.+++|+|+.|.+.+||++..+....+|.||..
T Consensus       428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            8888 99999999975211     1    23456999999999999 899999999999999999999999999999999


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  988 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~  988 (1120)
                      .|+++.|+|..+.|+|+|.|++|+||.+++     ..|++++.||..   .|..+.|-.+|++|++ +.||-+++|++.+
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            999999999999999999999999999999     568999999985   8999999999999999 6999999999999


Q ss_pred             ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      ++|+.++-  +|...|++++-++++.++++|+.||.|.+|.=.|
T Consensus       579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999875  8999999999999999999999999999996444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6e-50  Score=412.96  Aligned_cols=575  Identities=14%  Similarity=0.147  Sum_probs=432.7

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      -+.-.|.|+.++.+.+  ..|.+-+++......                   ++.+|..+++-..|||.|-|+|+|...|
T Consensus        23 ~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG   81 (603)
T KOG0318|consen   23 IIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG   81 (603)
T ss_pred             EeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence            3455677777777654  678888887765543                   5889999999999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe-cCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC
Q 001224          449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  527 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  527 (1120)
                      .|+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-+++|.-+..+.||...|.++.|-++.
T Consensus        82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR  159 (603)
T KOG0318|consen   82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR  159 (603)
T ss_pred             cEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC
Confidence            9999999875433 22356777899999999999997 33443 344455666667888999999999999999997765


Q ss_pred             CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEE
Q 001224          528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW  607 (1120)
Q Consensus       528 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  607 (1120)
                      . -.+++|+.|++|.+|+-...+-..++..|...|.++.|+|                     ||..+++++.||++.+|
T Consensus       160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP---------------------DG~~Fat~gsDgki~iy  217 (603)
T KOG0318|consen  160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP---------------------DGSRFATAGSDGKIYIY  217 (603)
T ss_pred             c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC---------------------CCCeEEEecCCccEEEE
Confidence            4 5799999999999996554444444455555555555555                     45589999999999999


Q ss_pred             ECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchh
Q 001224          608 DMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA  686 (1120)
Q Consensus       608 d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1120)
                      |-.+|+.+..+. ...|...|.+++|+||+..+++++.|.+++|||+.+. .+.+++.-.... .               
T Consensus       218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v-~---------------  280 (603)
T KOG0318|consen  218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV-E---------------  280 (603)
T ss_pred             cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-h---------------
Confidence            999999999997 3345568999999999999999999999999999988 555554321110 0               


Q ss_pred             hhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEc
Q 001224          687 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT  766 (1120)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s  766 (1120)
                                              ...+........|++.+.+|+|..++..........       .+|...|+++..+
T Consensus       281 ------------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  281 ------------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITALTVS  329 (603)
T ss_pred             ------------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeEEEEc
Confidence                                    111222334678999999999999998875522221       5799999999999


Q ss_pred             CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224          767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  846 (1120)
Q Consensus       767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~  846 (1120)
                      +++++|++++.||.|.-|+...+                      ..-  .+.+..|...|.+++.+..+.++.++-|.+
T Consensus       330 ~d~~~i~SgsyDG~I~~W~~~~g----------------------~~~--~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~  385 (603)
T KOG0318|consen  330 PDGKTIYSGSYDGHINSWDSGSG----------------------TSD--RLAGKGHTNQIKGMAASESGELFTIGWDDT  385 (603)
T ss_pred             CCCCEEEeeccCceEEEEecCCc----------------------ccc--ccccccccceEEEEeecCCCcEEEEecCCe
Confidence            99999999999999999986332                      211  122344999999999998888887777999


Q ss_pred             EEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224          847 ISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  924 (1120)
Q Consensus       847 i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  924 (1120)
                      +++.++........  ++- .....+++..+ ++.+++..+.++.+.+=|...   +..+. -.-...+++++|++..++
T Consensus       386 l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEEE
Confidence            99999865433222  121 12234888888 666666666555444433322   12221 223467899999999999


Q ss_pred             EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCC
Q 001224          925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP 1003 (1120)
Q Consensus       925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~ 1003 (1120)
                      .|+.|+.|.||.+...+......+..   |.   ++|++++||||+.+||++ ..+.+.+||+.+.+.... .-.-|...
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FHtak  532 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFHTAK  532 (603)
T ss_pred             EecccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeeeeee
Confidence            99999999999999866433222222   22   489999999999999997 778999999998887332 22258999


Q ss_pred             eeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1004 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      |.+++|||+.+++|+|+.|-.|.||+++.-...-.++      ..|..+ |+  .+.|.  |...+++.+.|..|++|++
T Consensus       533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             EEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeEEecc
Confidence            9999999999999999999999999998766554443      223233 66  88888  4789999999999999987


Q ss_pred             C
Q 001224         1084 L 1084 (1120)
Q Consensus      1084 ~ 1084 (1120)
                      .
T Consensus       602 ~  602 (603)
T KOG0318|consen  602 T  602 (603)
T ss_pred             c
Confidence            4

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-49  Score=427.14  Aligned_cols=578  Identities=19%  Similarity=0.309  Sum_probs=447.6

Q ss_pred             CCcceeeec--cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          353 LPKTVTRTL--NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       353 ~~~~~~~~~--~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      +.++...++  .+...|++++.||+|. ++++-...|...+-++.....+++++|                    ..+|.
T Consensus        42 LknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~  100 (893)
T KOG0291|consen   42 LKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVG  100 (893)
T ss_pred             ccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------cCccc
Confidence            344444444  4899999999999999 577778889999999988888876554                    35899


Q ss_pred             EEEEcCCCCeEEEEECCCeEEEEEccCCce-----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      |+.|||||+++|.|. .+.+.||.......     .....++.||...|.++.|+.|.+  ++++||.|.++++|+++.-
T Consensus       101 ~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~  177 (893)
T KOG0291|consen  101 AIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGN  177 (893)
T ss_pred             eEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccc
Confidence            999999999999886 45699998765432     234456789999999999999999  8999999999999999876


Q ss_pred             ce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-----eC---------CCCceeEEEEcC
Q 001224          506 AK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSA  569 (1120)
Q Consensus       506 ~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~  569 (1120)
                      +.  .+.+.+|.+.|.+.-|.  .+...+++.+.||.+.+|..........-     .+         ....+....|..
T Consensus       178 k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k  255 (893)
T KOG0291|consen  178 KNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK  255 (893)
T ss_pred             cccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence            65  56788999999886663  34467999999999999987632111100     00         000111111111


Q ss_pred             CCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcE
Q 001224          570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGI  648 (1120)
Q Consensus       570 ~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i  648 (1120)
                       .++.+-......+.+.+|++.-+.|++|-..|...+|++....+++.+....+  .|..++|+..|.+++.|+.. |.+
T Consensus       256 -~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQL  332 (893)
T KOG0291|consen  256 -TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQL  332 (893)
T ss_pred             -EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceE
Confidence             11222222335788999999999999999999999999999999999986544  69999999999999998764 788


Q ss_pred             EEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC
Q 001224          649 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  728 (1120)
Q Consensus       649 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  728 (1120)
                      -||+..+.. .+                                                                    
T Consensus       333 lVweWqsEs-YV--------------------------------------------------------------------  343 (893)
T KOG0291|consen  333 LVWEWQSES-YV--------------------------------------------------------------------  343 (893)
T ss_pred             EEEEeeccc-ee--------------------------------------------------------------------
Confidence            888876541 11                                                                    


Q ss_pred             CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224          729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  808 (1120)
Q Consensus       729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~  808 (1120)
                                            +..++|...+.+++++|||..+++|+.||.|+|||.                      
T Consensus       344 ----------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~----------------------  379 (893)
T KOG0291|consen  344 ----------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT----------------------  379 (893)
T ss_pred             ----------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEec----------------------
Confidence                                  111358899999999999999999999999999886                      


Q ss_pred             CCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeC
Q 001224          809 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMD  886 (1120)
Q Consensus       809 ~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~  886 (1120)
                      .+|.+... +.  .|...|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..... ...|++..| .|.++.+|+.
T Consensus       380 ~SgfC~vT-Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~  455 (893)
T KOG0291|consen  380 QSGFCFVT-FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQ  455 (893)
T ss_pred             cCceEEEE-ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeecc
Confidence            34443322 22  3999999999999999999999 99999999999999999875443 467889998 8889988888


Q ss_pred             CC-cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224          887 DS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       887 dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  965 (1120)
                      |. .|+||++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-..... ...+...       ..++.++
T Consensus       456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vs  527 (893)
T KOG0291|consen  456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVS  527 (893)
T ss_pred             ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEE
Confidence            76 7999999999999999999999999999999999999999999999998763221 1222222       3579999


Q ss_pred             EccCCcEEEE-EeCCeEEEEEcCCceeeeccccC------------------CCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224          966 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------------ESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus       966 fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~------------------~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
                      |+|||+.||+ .-||.|.+||...+..+..+...                  ......+.|++|+||.++++|+....|+
T Consensus       528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iC  607 (893)
T KOG0291|consen  528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSIC  607 (893)
T ss_pred             EcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEE
Confidence            9999999999 58999999999887665443211                  1246789999999999999999999999


Q ss_pred             EEEcCCcceeeeeCCCcc--------------------------------------cCC--------CCCCCCccceEEE
Q 001224         1027 VFSAANLKLRCRINPSAY--------------------------------------LPA--------GVSSSNVHPLVIA 1060 (1120)
Q Consensus      1027 iwd~~~~~~~~~~~~~~~--------------------------------------~~~--------g~~~~~v~~~~i~ 1060 (1120)
                      ||++.++.++.+++.+..                                      +|+        .+....|.+.++.
T Consensus       608 iY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~  687 (893)
T KOG0291|consen  608 IYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQ  687 (893)
T ss_pred             EEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEE
Confidence            999999988887653221                                      110        0112245677999


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1061 AHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      |+|+ |+-++.+++.| |.||.+.+.
T Consensus       688 fsPt-graFAaatTEG-l~IYsld~~  711 (893)
T KOG0291|consen  688 FSPT-GRAFAAATTEG-LLIYSLDTT  711 (893)
T ss_pred             ECCC-cCeeeeecccc-eEEEecCCc
Confidence            9995 88888888776 466666543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-53  Score=419.61  Aligned_cols=375  Identities=20%  Similarity=0.339  Sum_probs=299.2

Q ss_pred             CCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC
Q 001224          347 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG  426 (1120)
Q Consensus       347 ~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~  426 (1120)
                      ........++...+-+|.++|.|++|+|+|++ |++|+.|.++++||+.+...+.                   +.++|.
T Consensus        98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~  157 (480)
T KOG0271|consen   98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHK  157 (480)
T ss_pred             hhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCc
Confidence            34455556666677789999999999999996 9999999999999999987766                   488999


Q ss_pred             CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-----CCCceEEEEecCCCcEEEEE
Q 001224          427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      ..|.|++|||||+.||+|+.||+|++||.++|+++..  .|.+|...|++++|-|     ..+  +|++++.||+|+|||
T Consensus       158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd  233 (480)
T KOG0271|consen  158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWD  233 (480)
T ss_pred             cEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEE
Confidence            9999999999999999999999999999999987654  6889999999999965     455  699999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  581 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~  581 (1120)
                      +..+.++..+.||+.+|+|++|-.  + .++++|+.|++|++|+...+.....+.+|..+|..++.+.|-.         
T Consensus       234 ~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~---------  301 (480)
T KOG0271|consen  234 TKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV---------  301 (480)
T ss_pred             ccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh---------
Confidence            999999999999999999999832  3 4999999999999999999999999999999999888776532         


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                   |-+|.-|.+        +............ -.-.....-..+..|++|++|.++.+|+....    
T Consensus       302 -------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~----  356 (480)
T KOG0271|consen  302 -------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS----  356 (480)
T ss_pred             -------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc----
Confidence                         222221110        0000000000000 00000000111233333333333333332111    


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                                                                                                      
T Consensus       357 --------------------------------------------------------------------------------  356 (480)
T KOG0271|consen  357 --------------------------------------------------------------------------------  356 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                            .+.+.. .  
T Consensus       357 ----------------------------------------------------------------------kkpi~r-m--  363 (480)
T KOG0271|consen  357 ----------------------------------------------------------------------KKPITR-M--  363 (480)
T ss_pred             ----------------------------------------------------------------------ccchhh-h--
Confidence                                                                                  000100 1  


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      .+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++++.+
T Consensus       364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeee
Confidence            13888899999999999999999 99999999999999999999999999999999 99999999999999999999999


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      +...+.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus       443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-48  Score=417.39  Aligned_cols=609  Identities=14%  Similarity=0.212  Sum_probs=449.6

Q ss_pred             CceEEEEe-cCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          366 SPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       366 ~v~~v~~s-pdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      .+..+..+ ..|++  ++++.-..|.+||+++|+.....                 +...-...|+|++-+||.-+||+|
T Consensus        23 N~~~~~~~~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence            33333333 34774  33344478999999999544310                 122334689999999999999999


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      ..||.|+||+..++....   ++.||...|+++.|...|.  .|++||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus        84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            999999999999875443   7999999999999999999  69999999999999999999999999999999987764


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  604 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  604 (1120)
                      .  +..++++.+.|+.|++||+.+..+..+...|...+..+++.+                       +.+++++.|+.+
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~  213 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSEL  213 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCce
Confidence            4  337999999999999999999888888888888777777665                       358999999999


Q ss_pred             EEEECCCCc------------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224          605 KFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  672 (1120)
Q Consensus       605 ~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  672 (1120)
                      ++|++....            ...++...+ ......++..++++++++-+.|..+.++.+.+..+..+.+.........
T Consensus       214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kk  292 (888)
T KOG0306|consen  214 KVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKK  292 (888)
T ss_pred             EEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhh
Confidence            999983211            111121111 1234456777889999999999999999998875554433221000000


Q ss_pred             cCCCCCCCcccchhhhHhhhhccccccccccccccCC---C-CCcccccCCC-cceeeccCCCcceeeecccCC-C-Ccc
Q 001224          673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG---M-NGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PNQ  745 (1120)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~-~-~~~  745 (1120)
                      ... .. . ...+       +.....+...+...+..   . +.+....... ..++. -.++++..|.++... . +..
T Consensus       293 ka~-t~-e-~~~~-------v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~  361 (888)
T KOG0306|consen  293 KAE-TE-E-NEDD-------VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEA  361 (888)
T ss_pred             hcc-cc-c-cccc-------hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccc
Confidence            000 00 0 0000       00000000000000000   0 0111111122 23333 556778888777621 1 111


Q ss_pred             ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224          746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  825 (1120)
Q Consensus       746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  825 (1120)
                      .+.-.+...+|...|.+++++.+...++++ .++.+++|+.                      .+.+++...     ..+
T Consensus       362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~----------------------~t~kciRTi-----~~~  413 (888)
T KOG0306|consen  362 DRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR----------------------DTLKCIRTI-----TCG  413 (888)
T ss_pred             cccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc----------------------cCcceeEEe-----ccc
Confidence            111122225699999999999998755544 4557777765                      444444332     344


Q ss_pred             CccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-----ce
Q 001224          826 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DE  899 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~  899 (1120)
                      .+.+..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||..-     |.
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            788899999999999999 89999999999999999999999999999999 999999999999999999853     11


Q ss_pred             eeEeec-------ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          900 VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       900 ~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      ..+.+.       .-.+.|.|+.+||||++||.+=-|.+|+||-+++-     ...-.+-||.-   +|.++..|||+++
T Consensus       493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-----KFflsLYGHkL---PV~smDIS~DSkl  564 (888)
T KOG0306|consen  493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-----KFFLSLYGHKL---PVLSMDISPDSKL  564 (888)
T ss_pred             cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-----eeeeeeccccc---ceeEEeccCCcCe
Confidence            111111       13467999999999999999999999999999983     34555667764   8999999999999


Q ss_pred             EEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          973 FLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       973 la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                      +++ +.|+.|++|-++-|.|.+.+.  +|...|.++.|-|+..++.+++.|+.|+-||-...+.+..+.       ||+.
T Consensus       565 ivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~  635 (888)
T KOG0306|consen  565 IVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHS  635 (888)
T ss_pred             EEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchh
Confidence            999 499999999999999999998  899999999999999999999999999999999999998887       6655


Q ss_pred             CCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      . |+  +++-+| +|.+++++|.|.+|++|.-..
T Consensus       636 e-v~--cLav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  636 E-VW--CLAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             e-ee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence            5 77  788888 589999999999999999655

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.9e-47  Score=393.14  Aligned_cols=537  Identities=16%  Similarity=0.214  Sum_probs=421.1

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      .-+|...++-..|||.|-| +|+|...|+|+|||....+.+....|+                 --.++|..++|++|++
T Consensus        55 YtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds~  116 (603)
T KOG0318|consen   55 YTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDSK  116 (603)
T ss_pred             eccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCCc
Confidence            3458999999999999996 999999999999999876655544443                 3456999999999999


Q ss_pred             eEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          440 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       440 ~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      +|+..++.    |.+.+||  +|..+.   ++.||...|++++|-|.-.. .++||++|++|.+|+=.--+...++..|.
T Consensus       117 RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hs  190 (603)
T KOG0318|consen  117 RIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHS  190 (603)
T ss_pred             EEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccc
Confidence            99987643    3455555  444444   78999999999999998876 79999999999999966667777888999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ..|.++.|+  |||.++++.+.||.|.+||-.+++....+.   +|.+.|..++|+||++                    
T Consensus       191 kFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--------------------  248 (603)
T KOG0318|consen  191 KFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--------------------  248 (603)
T ss_pred             cceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--------------------
Confidence            999999985  557899999999999999999988887776   5666666666666664                    


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  671 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  671 (1120)
                       .+++++.|.+++|||+.+.+++.++...... .....+-|.  ...|++.+.+|+|.+++...+ ...+.+.+|...+.
T Consensus       249 -~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  249 -QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSIT  324 (603)
T ss_pred             -eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccccee
Confidence             7999999999999999999999998754331 122344554  668899999999999999998 48899999987654


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeecc
Q 001224          672 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  751 (1120)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  751 (1120)
                      .                                         ...+++++++++++.||.|.-|+...+.....      
T Consensus       325 a-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~------  357 (603)
T KOG0318|consen  325 A-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL------  357 (603)
T ss_pred             E-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCcccccc------
Confidence            2                                         22456789999999999999999987543322      


Q ss_pred             CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEE
Q 001224          752 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  831 (1120)
Q Consensus       752 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~  831 (1120)
                      .+.+|...|.+++.+..+. +++.+-|.++++.++....+....                 ..       .......+++
T Consensus       358 ~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~la  412 (603)
T KOG0318|consen  358 AGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGLA  412 (603)
T ss_pred             ccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeEE
Confidence            2245999999999988776 778888889988776332221100                 00       0233445899


Q ss_pred             EccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee--Eeeccccc
Q 001224          832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSK  909 (1120)
Q Consensus       832 ~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~~  909 (1120)
                      ..+++.+++...++.|.+..-.  ..+.+.. ..-...+++++| ++..+|+|+.||.|+||.+..+++.  ..+..|.+
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~--~~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a  488 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQ--TKVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA  488 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecC--Ccceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence            9999988888887777776522  2223332 344578999999 9999999999999999999875533  35677999


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK  988 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~  988 (1120)
                      +|++++||||+.+||++...+.+.+||+.+.+...    ....-|.   ..|.+++|+|+.+++|+| -|..|.||+++.
T Consensus       489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             CceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence            99999999999999999999999999999866522    1222233   379999999999999995 899999999986


Q ss_pred             ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      -... .....+|...|+.+.|- |...|++.+.|..|++|.+.
T Consensus       562 P~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  562 PAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             hhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            5443 22234788889999997 45668888899999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.6e-46  Score=399.05  Aligned_cols=539  Identities=15%  Similarity=0.237  Sum_probs=419.1

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      .+.|++||..++.  ...+.|.++|+.+++...                   +.-.+...|.+++.||+|.+|++...+|
T Consensus        19 nl~ft~dG~sviS--PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~g   77 (893)
T KOG0291|consen   19 NLVFTKDGNSVIS--PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDERG   77 (893)
T ss_pred             cEEECCCCCEEEe--ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCCC
Confidence            4789999986443  345899999998866432                   1234677999999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC--------ceeEEeeccccCeEE
Q 001224          449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVYS  520 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~  520 (1120)
                      ...+-++.....+.. +.   ...+|.++.|||||+  ++|.| ..+.+.||.....        ...+++.+|...|.+
T Consensus        78 ~~~lvs~~~r~Vlh~-f~---fk~~v~~i~fSPng~--~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s  150 (893)
T KOG0291|consen   78 RALLVSLLSRSVLHR-FN---FKRGVGAIKFSPNGK--FFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS  150 (893)
T ss_pred             cEEEEecccceeeEE-Ee---ecCccceEEECCCCc--EEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence            998888877554431 12   357899999999999  34444 4578999987542        234577899999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      +.|+.  |.++|++|+.|-++++|+++..+.  ...+.+|...|-..-|..+.                     ..+++.
T Consensus       151 i~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~---------------------~~l~tv  207 (893)
T KOG0291|consen  151 IDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS---------------------LDLYTV  207 (893)
T ss_pred             EEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc---------------------ceEEEE
Confidence            99854  447999999999999999987666  33445555555555554444                     469999


Q ss_pred             eCCCeEEEEECCC-----------------------Cce-----eE----EEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          599 GDDFSIKFWDMDS-----------------------VQL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       599 ~~dg~i~iwd~~~-----------------------~~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                      +.||.+.+|....                       ++.     ..    ..-.......+++.+|++..+.|++|-..|
T Consensus       208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG  287 (893)
T KOG0291|consen  208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG  287 (893)
T ss_pred             ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence            9999999998761                       111     00    000111124577888888888888888888


Q ss_pred             cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224          647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  726 (1120)
Q Consensus       647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  726 (1120)
                      .+.++.+..- .++..+                                                               
T Consensus       288 ~f~LyelP~f-~lih~L---------------------------------------------------------------  303 (893)
T KOG0291|consen  288 EFGLYELPDF-NLIHSL---------------------------------------------------------------  303 (893)
T ss_pred             eeEEEecCCc-eEEEEe---------------------------------------------------------------
Confidence            8888876543 222111                                                               


Q ss_pred             cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC-ceEEEeeecccccCCCCccccccCcee
Q 001224          727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                                                 .....+|..++|+..|..|+.++.. |.+.||+++.+.+              
T Consensus       304 ---------------------------Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--------------  342 (893)
T KOG0291|consen  304 ---------------------------SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--------------  342 (893)
T ss_pred             ---------------------------ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--------------
Confidence                                       0134688999999999999999886 9999999865432              


Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  884 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg  884 (1120)
                                 .++..+|...+++++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++.
T Consensus       343 -----------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llss  410 (893)
T KOG0291|consen  343 -----------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSS  410 (893)
T ss_pred             -----------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEe
Confidence                       122245999999999999999999999 99999999999999999999999999999999 99999999


Q ss_pred             eCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEEEEEeCCC-CEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224          885 MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  962 (1120)
Q Consensus       885 ~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~  962 (1120)
                      +-||+|+.||+...+..+++.... -...|++..|.|..++.|+.|. .|.||++++|+     .+..+.||..   +|.
T Consensus       411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PVs  482 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PVS  482 (893)
T ss_pred             ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cce
Confidence            999999999999999999987643 3356788888899999999886 59999999965     5778888874   999


Q ss_pred             EEEEccCCcEEEE-EeCCeEEEEEcCCce-eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          963 RVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       963 ~~~fspdg~~la~-~~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +++|+|+|..|++ +-|++|++||+-... .+.++   .+...+..++|+|||+-|++++.||.|.+||...+.....+.
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence            9999999999999 589999999986542 23333   347889999999999999999999999999999888776554


Q ss_pred             CCcccCCC----------CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1041 PSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1041 ~~~~~~~g----------~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ....+..|          ++.......+++|++ ||..+++|+..+.|.++++.++-
T Consensus       560 grkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  560 GRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             chhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhh
Confidence            33222222          122223345899999 79999999999999999998876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.6e-47  Score=407.17  Aligned_cols=513  Identities=13%  Similarity=0.208  Sum_probs=403.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      .+..|+|++-+||.- +||+|..||.|+||+..++..+.                   .+.||..+|+++.|+..|.+||
T Consensus        64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla  123 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA  123 (888)
T ss_pred             ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence            446899999999987 69999999999999999886655                   3889999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  522 (1120)
                      +||.|+.|.+||+-...-+   ..++||.+.|+..-|..+.+  ++++.|.|+.|++||+.+..|..+...|.+.|++++
T Consensus       124 SGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  124 SGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             ecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence            9999999999999875433   36999999999999998777  899999999999999999999999999999999999


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCc------------eee-eCCCCceeEEEEcCCCCeEEec------------
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------------VDY-EAPGRWCTTMAYSADGTRTYQG------------  577 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~~-~~~~~~v~~~~~s~~g~~~~~~------------  577 (1120)
                      +..    ..+++++.|+.+++|++......            -++ ....+....+...++++.++-.            
T Consensus       199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            864    47999999999999998321100            000 1111122223333333311000            


Q ss_pred             -------------------------------------------ccccceeEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 001224          578 -------------------------------------------FRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS  611 (1120)
Q Consensus       578 -------------------------------------------~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  611 (1120)
                                                                 .....+..+++.|.++   .|+. -.++++..|.+..
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~  353 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN  353 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence                                                       0011334455555433   2333 5677888887765


Q ss_pred             -Cc------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccc
Q 001224          612 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  684 (1120)
Q Consensus       612 -~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1120)
                       +.      .+..+...+|...|+++++|.+...+++|+ .+.+.+|+..+. ++++++                     
T Consensus       354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi---------------------  410 (888)
T KOG0306|consen  354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTI---------------------  410 (888)
T ss_pred             CCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEe---------------------
Confidence             21      123344445566899999999887777765 478999998776 444333                     


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEE
Q 001224          685 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  764 (1120)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  764 (1120)
                                                                                             ....+.+..
T Consensus       411 -----------------------------------------------------------------------~~~y~l~~~  419 (888)
T KOG0306|consen  411 -----------------------------------------------------------------------TCGYILASK  419 (888)
T ss_pred             -----------------------------------------------------------------------ccccEEEEE
Confidence                                                                                   123677888


Q ss_pred             EcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-
Q 001224          765 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-  843 (1120)
Q Consensus       765 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-  843 (1120)
                      |-|.+++++.|..+|.+.+||+..                      ...+.. ..  .|++.+.+++.+||++.+++|+ 
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa  474 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSA  474 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence            999999999999999999998732                      221111 12  3999999999999999999999 


Q ss_pred             CCcEEEEEcCC-----Ccee--------eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc
Q 001224          844 GGKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  910 (1120)
Q Consensus       844 dg~i~vwd~~~-----~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~  910 (1120)
                      |.+|++||..-     +...        +++. -...|.|+.+|| |+++||++--|.+|+||-+++.+..-.+.||.-+
T Consensus       475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP  552 (888)
T KOG0306|consen  475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP  552 (888)
T ss_pred             CcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence            99999999741     1111        1222 346799999999 9999999999999999999999999999999999


Q ss_pred             eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCc
Q 001224          911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL  989 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~  989 (1120)
                      |.||..|||++.++|||.|..|+||-++-|.+     .+.+-+|.+   +|.++.|-|+...+.+ |.|+.|+-||..+.
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhh
Confidence            99999999999999999999999999998775     444455554   8999999998887777 69999999999999


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      +++..+.  +|...|++++.+|+|.++++++.|.+|++|.-....++
T Consensus       625 e~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  625 EEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             hhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence            9998876  89999999999999999999999999999987664433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-50  Score=396.44  Aligned_cols=364  Identities=19%  Similarity=0.247  Sum_probs=298.1

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.||.++|.|++|||+|++||+|+.|.++++||+.+..   +.++..+|..-|.|++|+|||+  .|++|+.||+|++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW  184 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence            478999999999999999999999999999999999976   4458999999999999999999  69999999999999


Q ss_pred             ECCCCcee-EEeeccccCeEEEeecc---CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          501 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       501 d~~~~~~~-~~~~~h~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      |.++|+++ ..+.+|...|++++|.|   .+...+|++++.||.|+|||+..+.+...+.+|...|+++.|.-+|     
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-----  259 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-----  259 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence            99998876 68999999999999865   3556799999999999999999999999999999999999997776     


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                       ++++|+.|++|++|+...|.+...+++|.+  .|+.++.+-|- .              ++++
T Consensus       260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~--------------LRtg  305 (480)
T KOG0271|consen  260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-V--------------LRTG  305 (480)
T ss_pred             -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-h--------------hhcc
Confidence                             599999999999999999999999998877  78888876542 1              1122


Q ss_pred             chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                                             +|.+.+                                                   
T Consensus       306 -----------------------af~~t~---------------------------------------------------  311 (480)
T KOG0271|consen  306 -----------------------AFDHTG---------------------------------------------------  311 (480)
T ss_pred             -----------------------cccccc---------------------------------------------------
Confidence                                   111111                                                   


Q ss_pred             cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224          737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                                       +..-..++.        +       .++               +.  
T Consensus       312 ---------------------------------~~~~~~se~--------~-------~~A---------------l~--  326 (480)
T KOG0271|consen  312 ---------------------------------RKPKSFSEE--------Q-------KKA---------------LE--  326 (480)
T ss_pred             ---------------------------------ccCCChHHH--------H-------HHH---------------HH--
Confidence                                             000000000        0       000               00  


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                            ..    ..+.-..+..+++|+ |.++.+|+-.. .+++..+.+|...|+.+.||| |++++|+++-|.+|++|+
T Consensus       327 ------rY----~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  327 ------RY----EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD  395 (480)
T ss_pred             ------HH----HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence                  00    000112346788888 78899998754 457788899999999999999 999999999999999999


Q ss_pred             eecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      ..+|+.+..|+||-++|+.++|+.|.++|+||+.|.++++|++.+.+.     ..                         
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~-------------------------  445 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ-------------------------  445 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc-------------------------
Confidence            999999999999999999999999999999999999999999988321     11                         


Q ss_pred             EEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          975 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       975 ~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                                           ...+|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus       446 ---------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  446 ---------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ---------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                                 1237888888888888888888888888888884

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.1e-45  Score=385.66  Aligned_cols=595  Identities=15%  Similarity=0.191  Sum_probs=402.0

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE--C
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY--S  446 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--~  446 (1120)
                      .++-+|-.. ++|. -....|.+||++..++-+                   ++..|..+++|++||++|+|+|+|-  .
T Consensus        42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~  100 (1080)
T KOG1408|consen   42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR  100 (1080)
T ss_pred             ccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence            455556544 2322 223688999998765544                   5778889999999999999999974  6


Q ss_pred             CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--CCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      ...++||++.....+.   ++..|.-.|+|++|+|.++  |+++.+.  |-.|.+||++.......-+ -...|..++| 
T Consensus       101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f-  173 (1080)
T KOG1408|consen  101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF-  173 (1080)
T ss_pred             Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE-
Confidence            6789999999877565   6889999999999999999  6777665  4467889987654433322 3466888887 


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCce---eeeCCCC--------------------ceeEEEEcCCCCe-------E
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGR--------------------WCTTMAYSADGTR-------T  574 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--------------------~v~~~~~s~~g~~-------~  574 (1120)
                       +++|.|+++.+. ..|++|.++......   .+.+...                    .-...+++..|..       +
T Consensus       174 -sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRL  251 (1080)
T KOG1408|consen  174 -SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRL  251 (1080)
T ss_pred             -ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhh
Confidence             567789998874 899999987655211   0111000                    0122333333320       0


Q ss_pred             ---EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC----------------------CCCCCcCe
Q 001224          575 ---YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------------GGLPASPR  629 (1120)
Q Consensus       575 ---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~~~v~~  629 (1120)
                         +...+...-.|++++.  +++++|+.+|.|++|+..+-.-+.++...                      .......+
T Consensus       252 LDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA  329 (1080)
T KOG1408|consen  252 LDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA  329 (1080)
T ss_pred             hhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE
Confidence               1112222334455554  68999999999999998776544444311                      11123457


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCC
Q 001224          630 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG  709 (1120)
Q Consensus       630 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1120)
                      +.|++....|.+...|..+++||+++-.+.-+...-   .                                        
T Consensus       330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~---l----------------------------------------  366 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM---L----------------------------------------  366 (1080)
T ss_pred             EEecCCCceEEEEEcCceEEEEeccccccccceeee---e----------------------------------------
Confidence            889999999999999999999999876333221100   0                                        


Q ss_pred             CCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224          710 MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  789 (1120)
Q Consensus       710 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~  789 (1120)
                                         -..-.+|+++......           |...-   +.-|.+. ++++++|++|++|++...
T Consensus       367 -------------------yHS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~c  412 (1080)
T KOG1408|consen  367 -------------------YHSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLAFC  412 (1080)
T ss_pred             -------------------eccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeecccc
Confidence                               0112344444321000           00000   1112222 445555555555554331


Q ss_pred             ccCCC--Ccccccc--Cc--------eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc
Q 001224          790 ERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  856 (1120)
Q Consensus       790 ~~~~~--~~~~~~~--~~--------~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~  856 (1120)
                      ..+..  .+++...  .+        .+.|...+-.-............+.++++||+|++||+|. .|+++||++...+
T Consensus       413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~  492 (1080)
T KOG1408|consen  413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE  492 (1080)
T ss_pred             cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence            10000  0000000  00        0001111110000000112567899999999999999999 7999999999999


Q ss_pred             eeeeecCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEEccCC--CEEEEEeCCCC
Q 001224          857 TMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQ  931 (1120)
Q Consensus       857 ~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg~  931 (1120)
                      ....+.+|..+|.|+.||-.  ..++||+++.|..|+|||+.. ..++.++.+|++.|+++.|.-.|  ..++++|.|+.
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence            98999999999999999952  357999999999999999875 46788999999999999999777  78999999997


Q ss_pred             EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeecccc-CCCCCCeeEEEE
Q 001224          932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATF 1009 (1120)
Q Consensus       932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~ 1009 (1120)
                      |.+- ....  .....+-....+......+..++..|..+++++ +.|+.|+||++.+++..+.|.. ++|.+..-.+..
T Consensus       573 imFr-~~qk--~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~l  649 (1080)
T KOG1408|consen  573 IMFR-VNQK--ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVIL  649 (1080)
T ss_pred             hhee-hhcc--ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEE
Confidence            7543 3221  001111111111112246789999999999999 6999999999999999999875 346788889999


Q ss_pred             CCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1010 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1010 s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      .|.|-|||+.+.|.++.++|..+|+++.+..       ||... |.  .+.|.+ |.+.|++++.||.|+||.++..
T Consensus       650 DPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  650 DPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             CCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchh
Confidence            9999999999999999999999999998877       54333 44  899999 7899999999999999998753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=5.8e-40  Score=349.18  Aligned_cols=556  Identities=13%  Similarity=0.150  Sum_probs=374.5

Q ss_pred             eeecc-CCCCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          358 TRTLN-QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       358 ~~~~~-h~~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      .+++. |..+++|++||++|+| +|+|-  ..-.++||++.....+..                   +..|...|+|++|
T Consensus        71 ~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaF  130 (1080)
T KOG1408|consen   71 SHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAF  130 (1080)
T ss_pred             hheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeee
Confidence            34444 7889999999999996 89986  456799999998776653                   7789999999999


Q ss_pred             cCCCCeEEEEEC--CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE--
Q 001224          435 SPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--  510 (1120)
Q Consensus       435 spdg~~las~~~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~--  510 (1120)
                      +|.++|+++.+.  |..|.+||++.+....    -..-...|..++|+.||.  |++|.+ ...|++|.++.++....  
T Consensus       131 sp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~Kykdpi  203 (1080)
T KOG1408|consen  131 SPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPI  203 (1080)
T ss_pred             cCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCc
Confidence            999999998764  5578889887654332    122356899999999999  788877 57899999886641110  


Q ss_pred             -----------e------------------------eccc-----------------cCeEEEeeccCCCceEEEEEecC
Q 001224          511 -----------F------------------------EGHE-----------------APVYSVCPHHKENIQFIFSTALD  538 (1120)
Q Consensus       511 -----------~------------------------~~h~-----------------~~v~~~~~~~~~~~~~l~s~~~d  538 (1120)
                                 +                        .||-                 ..-.|+|.    +.++|+.|+.+
T Consensus       204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~  279 (1080)
T KOG1408|consen  204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAK  279 (1080)
T ss_pred             cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeecc
Confidence                       0                        0110                 01123333    22689999999


Q ss_pred             CeEEEEecCCCCCceeeeCCCC---ceeEEEEcCCCCeEEeccccc---ceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001224          539 GKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV  612 (1120)
Q Consensus       539 g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  612 (1120)
                      |.|++|+..+..-..++.....   .+..+.   .-..+..+....   ....+.|++....|.+...|..++|||++.-
T Consensus       280 g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~---q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~  356 (1080)
T KOG1408|consen  280 GMVRLFNPETLDYAGTLPRSHALGSDTANLS---QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV  356 (1080)
T ss_pred             ceeeecCcchhhhccccccccccccchhhcc---cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence            9999998877554444332111   111110   001111111111   2335678888899999999999999999864


Q ss_pred             ceeEEEe-cCCCCCCcCeEEEcC-----------CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          613 QLLTSID-ADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       613 ~~~~~~~-~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      ..+.... .-.|...|+++.--|           -...+++++.|++|++|++..+.. -..+.......          
T Consensus       357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils~----------  425 (1080)
T KOG1408|consen  357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILSA----------  425 (1080)
T ss_pred             ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccchh----------
Confidence            4332110 001111233333222           023488899999999999875310 00000000000          


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  760 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  760 (1120)
                                                              ..+-.-..|++..+....+.....+..   .........+
T Consensus       426 ----------------------------------------~l~ki~y~d~~~q~~~d~~~~~fdka~---~s~~d~r~G~  462 (1080)
T KOG1408|consen  426 ----------------------------------------NLSKIPYEDSTQQIMHDASAGIFDKAL---VSTCDSRFGF  462 (1080)
T ss_pred             ----------------------------------------hhhcCccccCchhhhhhccCCcccccc---hhhcCcccce
Confidence                                                    000000000110000000000000000   0001245678


Q ss_pred             EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCC
Q 001224          761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDS  837 (1120)
Q Consensus       761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~  837 (1120)
                      ++++++|+|++|+++...|.++||+++....                       .  .....|+..|.|+.+|.   ..+
T Consensus       463 R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~--~~~eAHesEilcLeyS~p~~~~k  517 (1080)
T KOG1408|consen  463 RALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------T--CFMEAHESEILCLEYSFPVLTNK  517 (1080)
T ss_pred             EEEEECCCcceecccCccCceEEEEehhhhh-----------------------h--hheecccceeEEEeecCchhhhH
Confidence            9999999999999999999999999853211                       0  11123999999999984   357


Q ss_pred             EEEEEe-CCcEEEEEcC-CCceeeeecCCCCCeEEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeEeecc-----cc
Q 001224          838 YVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HS  908 (1120)
Q Consensus       838 ~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~~-----h~  908 (1120)
                      +||+++ |.-|.|||+. ...+++++.+|...|+++.|.. .|  ..+++++.|..|.+--.+.......+..     ..
T Consensus       518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k  596 (1080)
T KOG1408|consen  518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK  596 (1080)
T ss_pred             hhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence            899999 8899999997 4566788999999999999998 54  6778888898876544332111122221     22


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT  987 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~  987 (1120)
                      ..++.|+..|..+++++++.|+.|+||+++.++.     .+.+.+.....+..-.+...|.|.|||+ +.|+++.++|.-
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence            4688999999999999999999999999999775     3344444444457788999999999999 599999999999


Q ss_pred             CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                      +|+|+....  +|...|+.+.|++|.+.|++++.||.|+||.+....
T Consensus       672 sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m  716 (1080)
T KOG1408|consen  672 SGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM  716 (1080)
T ss_pred             cchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence            999999877  999999999999999999999999999999987543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-38  Score=341.65  Aligned_cols=584  Identities=15%  Similarity=0.156  Sum_probs=431.5

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      ..+..-|..++++.+.+++..+||.+.-..+..                   -..+...|.|++=..+-  +.+++. ..
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~--vy~A~g-~~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDY--VYVASG-NK   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCce--EEEecC-cE
Confidence            556666777899999999999999987666552                   34577899999865544  444432 33


Q ss_pred             EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ce----eEEeeccccCeEEEeec
Q 001224          450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~----~~~~~~h~~~v~~~~~~  524 (1120)
                      |.+|.  .|+.++.  .+.+|.+.|.-+.  +-|.  .++++..++.+.||+...+ +.    +..++...+.|++++ |
T Consensus        97 i~~~~--rgk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYA--RGKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEE--ccceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            55554  4444443  4567777787765  4466  6899999999999998874 22    122233334488775 5


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  604 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  604 (1120)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=                     ..++.|..+|+|
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V  226 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV  226 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence            66555678999999999999999999999999888888887766643                     368889999999


Q ss_pred             EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEccCcchhhhhcc-cccccccccCCCCCCCcc
Q 001224          605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS  682 (1120)
Q Consensus       605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  682 (1120)
                      .++|++.++.+.+++...  +.|++++|.-||.. +++|+..|.+-+||++.. +...... .|...             
T Consensus       227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~s-------------  290 (910)
T KOG1539|consen  227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGS-------------  290 (910)
T ss_pred             EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCC-------------
Confidence            999999999999998653  37999999999875 556666799999999876 3333332 33221             


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224          683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  762 (1120)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  762 (1120)
                                                  -....+.+....+++++.|+.+++|-.+.+.....  .+... .+|..+..+
T Consensus       291 ----------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~  339 (910)
T KOG1539|consen  291 ----------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSC  339 (910)
T ss_pred             ----------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchh
Confidence                                        12234556778899999999999998775433222  22222 579999999


Q ss_pred             EEEc-CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC----C
Q 001224          763 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S  837 (1120)
Q Consensus       763 l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~----~  837 (1120)
                      +.|- .+|..+++++.|++.+.+++..+.++..-..       ......+..+.........-.+|..+++....    .
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence            9998 7899999999999999988765544322111       11111111110000000023345566654321    1


Q ss_pred             EEEEEe--CCcEEEEEcCCCce-eeeec-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee---cc
Q 001224          838 YVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG  906 (1120)
Q Consensus       838 ~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~  906 (1120)
                      -++++.  +...+.|++..... ...+.     .....+++++.++ .|++.+.|+..|.|-+|++++|-....+   ..
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a  491 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA  491 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence            244443  57799999986544 22332     2346799999999 9999999999999999999999888888   58


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  985 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d  985 (1120)
                      |.++|++++...-++.++|++.||.+++||......     +....-    ...+..+..+.....+++ ..|-.|.++|
T Consensus       492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~l----~~~~~~iv~hr~s~l~a~~~ddf~I~vvD  562 (910)
T KOG1539|consen  492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLRL----GSSITGIVYHRVSDLLAIALDDFSIRVVD  562 (910)
T ss_pred             ccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeecc----CCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence            999999999988889999999999999999988442     222211    136788888988888888 5788999999


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      +.+.+.++.+.  +|.+.|++++|||||++|++++.|++|++||+.++.++..+.    ..       ..++++.|+| .
T Consensus       563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n  628 (910)
T KOG1539|consen  563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N  628 (910)
T ss_pred             chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence            99999999988  899999999999999999999999999999999999998765    11       2345899999 5


Q ss_pred             CCEEEEEeCC-CcEEEEec
Q 001224         1066 PNEFALGLSD-GGVHVFEP 1083 (1120)
Q Consensus      1066 ~~~l~s~~~D-g~v~vW~~ 1083 (1120)
                      |++|+|+..| ..|++|.=
T Consensus       629 gD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  629 GDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             CCEEEEEEecCceEEEEEc
Confidence            9999999999 78999973

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.7e-39  Score=329.23  Aligned_cols=353  Identities=18%  Similarity=0.326  Sum_probs=280.5

Q ss_pred             CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe--eceee-eccCCCCcccccccccCCCCce
Q 001224          353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL--RNFKV-WDLGACSMPLQAALVKDPGVSV  429 (1120)
Q Consensus       353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~h~~~V  429 (1120)
                      .+....+.+.|..+|.+.+|+|-..-++++|+.|-+.++|++........  ..+|- .+...        .-......|
T Consensus       167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~--------~s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGG--------KSVPSNKDV  238 (524)
T ss_pred             ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhc--------ccCCccCCc
Confidence            35566677789999999999998776799999999999999974111110  00000 00000        001123579


Q ss_pred             EEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          430 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       430 ~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      ++++|+.+|..||+|+.||.++||+..++. +   .+|..|.++|.++.|+.+|.  ||++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~---~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-I---STLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-h---hhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999998764 2   26889999999999999999  89999999999999999999988


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                      .+.-|..+-..+.|-..                                                               
T Consensus       313 ~f~~~s~~~lDVdW~~~---------------------------------------------------------------  329 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSN---------------------------------------------------------------  329 (524)
T ss_pred             eeeeccCCccceEEecC---------------------------------------------------------------
Confidence            88877766333443111                                                               


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccc
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  669 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  669 (1120)
                         ..+++.+.||.|+++.+....++.++.+|  ...|.++.|.|.|.+|++++.|++++||+.... .....+      
T Consensus       330 ---~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l------  397 (524)
T KOG0273|consen  330 ---DEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL------  397 (524)
T ss_pred             ---ceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh------
Confidence               13666777777777777778888888875  458999999999999999999999999997655 222222      


Q ss_pred             ccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224          670 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  749 (1120)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  749 (1120)
                                                                                                      
T Consensus       398 --------------------------------------------------------------------------------  397 (524)
T KOG0273|consen  398 --------------------------------------------------------------------------------  397 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       750 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                          .+|...|..+.|+|+|..                                 .|                +      
T Consensus       398 ----~~Hskei~t~~wsp~g~v---------------------------------~~----------------n------  418 (524)
T KOG0273|consen  398 ----QAHSKEIYTIKWSPTGPV---------------------------------TS----------------N------  418 (524)
T ss_pred             ----hhhccceeeEeecCCCCc---------------------------------cC----------------C------
Confidence                237778888899988751                                 00                0      


Q ss_pred             EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224          830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  908 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~  908 (1120)
                         ...+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++.+...+- 
T Consensus       419 ---~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-  493 (524)
T KOG0273|consen  419 ---PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-  493 (524)
T ss_pred             ---CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-
Confidence               01344566666 99999999999999999999999999999999 9999999999999999999999999988864 


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      +.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus       494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  494 GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            559999999999999999999999998864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-40  Score=334.46  Aligned_cols=285  Identities=18%  Similarity=0.260  Sum_probs=259.1

Q ss_pred             ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       469 ~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      |-+.+|..+.|+.|++  .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..+++|+.||++++|++++
T Consensus       173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            4567999999999999  79999999999999999999999999999999999999986567899999999999999999


Q ss_pred             CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcC
Q 001224          549 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  628 (1120)
Q Consensus       549 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  628 (1120)
                      ..++..+.+|...|..++|.|+|+                     +|++++.|.+-++||+.++..+....+|  ...|.
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~  307 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF  307 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence            999999999888777777777665                     8999999999999999999888777665  45899


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224          629 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  708 (1120)
Q Consensus       629 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1120)
                      +++|.+||.++++|+.|..-+|||++++. ++-.                                              
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~----------------------------------------------  340 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMF----------------------------------------------  340 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCc-EEEE----------------------------------------------
Confidence            99999999999999999999999998871 1100                                              


Q ss_pred             CCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224          709 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  788 (1120)
Q Consensus       709 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~  788 (1120)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (459)
T KOG0272|consen  341 --------------------------------------------------------------------------------  340 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCC
Q 001224          789 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA  867 (1120)
Q Consensus       789 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~  867 (1120)
                                                   +.  +|..+|.+++|+|+|..+|+|+ |++++|||++..+.+.++.+|.+-
T Consensus       341 -----------------------------L~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  341 -----------------------------LA--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             -----------------------------ec--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence                                         11  2778888899999999999998 999999999988889999999999


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      |+.|.|+|+.|.+|++++.|++++||...++.+++.+.||.+.|.++.+++|+.+++|++.|+++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999998899999999999999999999999999999999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.3e-39  Score=352.17  Aligned_cols=276  Identities=18%  Similarity=0.275  Sum_probs=235.1

Q ss_pred             CCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe---eceeee---------ccCCCCcc
Q 001224          350 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMP  416 (1120)
Q Consensus       350 ~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---~~~~~~---------~~~~~~~~  416 (1120)
                      .+.+|.-+.+++. -...++|..||+|++ ++|.|..|..|++|.+...+....   ..+.-.         ++......
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            4455666666666 568999999999999 799999999999999985331110   000001         11122222


Q ss_pred             cccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          417 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       417 ~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      .....+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++-   .+.||..+|+++.|+|-|-  |+||+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            3334589999999999999999999999999999999999987654   6889999999999999998  8999999999


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      .++|......+++.+.+|.+.|.|+.|||+.  .++++||.|.+||+||+.++..+..+.+|..+|.+++|+|+|+    
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr----  590 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR----  590 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence            9999999999999999999999999998765  6999999999999999999998888888888888777777775    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                       +|++|++||.|.+||+.+++.+..+.+|  ...|.++.|+.||..|++|+.|++|++||+...
T Consensus       591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                             8999999999999999999999999877  558999999999999999999999999998654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.8e-40  Score=329.55  Aligned_cols=284  Identities=19%  Similarity=0.305  Sum_probs=257.9

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC--C
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G  438 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g  438 (1120)
                      ++...+|..+.||+|++ +||||+-+|.+.||+..+...+.                   ++.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence            45678999999999999 59999999999999999987666                   48999999999999995  6


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      .-||+|+.||++++|++++...+.   .+.+|...|..++|.|+|+  +|+|++.|.+-++||+.++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999977665   7999999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|++  ||.++++|+.|..-++||++++.++..+.+|...|.+++|+|+|.                     .|++|
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg  363 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG  363 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence            9999864  568999999999999999999999999999999888888888875                     79999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCC
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  677 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1120)
                      |.|++++|||++..+.+..+.+|..  .|+.+.|+| .|.+|++++.|+++++|...+. .+++.+.             
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa-------------  427 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA-------------  427 (459)
T ss_pred             CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence            9999999999999999988887754  799999999 8999999999999999988766 4554443             


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccc
Q 001224          678 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  757 (1120)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~  757 (1120)
                                                                                                   +|+
T Consensus       428 -----------------------------------------------------------------------------GHe  430 (459)
T KOG0272|consen  428 -----------------------------------------------------------------------------GHE  430 (459)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         488


Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      +.|.++.+++++..+++++.|.++++|.
T Consensus       431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  431 GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceEEEEeccCCceEEEeccCceeeecc
Confidence            8899999999999999999999999984

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.2e-38  Score=303.18  Aligned_cols=290  Identities=19%  Similarity=0.290  Sum_probs=257.0

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +-+|...|.++.|++|+++ +++++.||.++|||.-+..+.+..+                   -....|..++|+|.|+
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~haip-------------------l~s~WVMtCA~sPSg~  110 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHAIP-------------------LPSSWVMTCAYSPSGN  110 (343)
T ss_pred             ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeEEe-------------------cCceeEEEEEECCCCC
Confidence            4459999999999999996 9999999999999999887776433                   3466899999999999


Q ss_pred             eEEEEECCCeEEEEEccCC--c-eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224          440 LFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  516 (1120)
                      ++|+|+-|....||++.+.  + ..+...++.+|.+-+.|+.|.+|+.   |+|++.|.++.+||+++|+.+..|.||.+
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g  187 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG  187 (343)
T ss_pred             eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence            9999999999999999854  1 2334457899999999999999887   99999999999999999999999999999


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|.++.+.|+ +++.+++|+.|+..++||++.+.+.++|.+|...|.++.|.|+|.                     -++
T Consensus       188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa  245 (343)
T KOG0286|consen  188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA  245 (343)
T ss_pred             cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence            9999998774 668999999999999999999999999999998888887777775                     699


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  676 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  676 (1120)
                      +|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+             
T Consensus       246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L-------------  311 (343)
T KOG0286|consen  246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL-------------  311 (343)
T ss_pred             ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence            999999999999999999999987777778999999999999999999999999997655 111111             


Q ss_pred             CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224          677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  756 (1120)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  756 (1120)
                                                                                                   .+|
T Consensus       312 -----------------------------------------------------------------------------~GH  314 (343)
T KOG0286|consen  312 -----------------------------------------------------------------------------AGH  314 (343)
T ss_pred             -----------------------------------------------------------------------------ecc
Confidence                                                                                         248


Q ss_pred             cccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          757 ATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      ..+|.++..+|||..+++++-|..++||.
T Consensus       315 eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999999993

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-36  Score=320.30  Aligned_cols=465  Identities=17%  Similarity=0.257  Sum_probs=350.7

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      .+.+.|.++.|+|...+ +.++-..|.|.|||.++...+..                   +.-..-+|.+..|-+.-+++
T Consensus        11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi   70 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI   70 (794)
T ss_pred             ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence            48899999999999997 67778889999999999887754                   22245589999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCeEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS  520 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~  520 (1120)
                      ++|+.|..|+||++.+++.+.   .+..|.+-|.+++..|...  +++|+|+|-+|++||++.+ .+.++|.||...|.+
T Consensus        71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence            999999999999999988666   7899999999999999999  8999999999999999865 678899999999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      ++|.|..+ +.+++++.|++|++|.+....+..++.+|...|.++.+-+.|.                   ..+|++|++
T Consensus       146 v~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaD  205 (794)
T KOG0276|consen  146 VAFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGAD  205 (794)
T ss_pred             EEecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCC
Confidence            99988654 7999999999999999999999999999999999998877764                   258999999


Q ss_pred             CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      |.+|+|||..+..|++++.+|.+  .|..+.|+|.-..+++|+.||+++||+..+- +....+.                
T Consensus       206 D~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------  266 (794)
T KOG0276|consen  206 DLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------  266 (794)
T ss_pred             CceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh----------------
Confidence            99999999999999999987755  7999999999999999999999999987655 2222221                


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  760 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  760 (1120)
                                                                                                -...++
T Consensus       267 --------------------------------------------------------------------------~gleRv  272 (794)
T KOG0276|consen  267 --------------------------------------------------------------------------YGLERV  272 (794)
T ss_pred             --------------------------------------------------------------------------cCCceE
Confidence                                                                                      022456


Q ss_pred             EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE
Q 001224          761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  840 (1120)
Q Consensus       761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  840 (1120)
                      .+++..+.+..++.|..+|.+.+- +                                     ......+.+++.|+.+-
T Consensus       273 W~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIiw  314 (794)
T KOG0276|consen  273 WCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKIIW  314 (794)
T ss_pred             EEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEEE
Confidence            666666777777777777776651 1                                     11222344455554443


Q ss_pred             EEeC--CcEEEE------EcCCCcee----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224          841 SASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  908 (1120)
Q Consensus       841 ~~sd--g~i~vw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~  908 (1120)
                      +...  -.+.+-      ++..|+.+    +.+-...-....++-+| +|+++++++ ||.-.||..-..+     ..+.
T Consensus       315 a~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~f  387 (794)
T KOG0276|consen  315 AVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAF  387 (794)
T ss_pred             EcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hccc
Confidence            3321  111111      22233322    11111122345678889 898887665 8888888743222     1244


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  988 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~  988 (1120)
                      +.-....|++|.+..+.--.++.|+++  +..+..+...            .-....+--.|.+|.+..++.+++||.++
T Consensus       388 G~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~  453 (794)
T KOG0276|consen  388 GSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWES  453 (794)
T ss_pred             ccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEccc
Confidence            556678899998888888778889988  3322211100            01123333456777778999999999999


Q ss_pred             ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      ++.++.+..     ....+.|+.+|.+++.++.|. .+|+.
T Consensus       454 ~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  454 GELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             ceEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence            999988753     356789999999999888664 44443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-35  Score=322.54  Aligned_cols=553  Identities=13%  Similarity=0.193  Sum_probs=411.6

Q ss_pred             ceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          356 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       356 ~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ++...- .+.+.|+|++=+-+--   .+++ ...|.+|.-  |+.+..                  +..+|...|.-+. 
T Consensus        67 ~ll~vs~~lp~~I~alas~~~~v---y~A~-g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~-  121 (910)
T KOG1539|consen   67 NLLFVSKPLPDKITALASDKDYV---YVAS-GNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL-  121 (910)
T ss_pred             EEEEecCCCCCceEEEEecCceE---EEec-CcEEEEEEc--cceEEE------------------EeccccceEEEEe-
Confidence            444444 3788999988766643   2322 255666643  433321                  3556776777665 


Q ss_pred             cCCCCeEEEEECCCeEEEEEccCC-ceee-eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          435 SPDGSLFGVAYSRHIVQIYSYHGG-DEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       435 spdg~~las~~~dg~v~iwd~~~~-~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                       +=|.+++++..++.+.||+..++ .... +..-+....+.|+++.- |..----++.|+.+|.+.+|++++++.+++++
T Consensus       122 -~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~  199 (910)
T KOG1539|consen  122 -PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ  199 (910)
T ss_pred             -eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEec
Confidence             44889999999999999999884 2111 11112222233777653 43211138999999999999999999999999


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ++...|+++.-+  +--+.++.|..+|+|.+++++..+.+.++....+.|++++|..||.                    
T Consensus       200 ~~~s~IT~ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------------  257 (910)
T KOG1539|consen  200 EFFSRITAIEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------------  257 (910)
T ss_pred             ccccceeEeccC--CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------
Confidence            999999998854  4446899999999999999999999999998889999999999997                    


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc---chhhhhccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYD  669 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~  669 (1120)
                      ..+++|+..|.+.+||++..+.+..+. ..|...+....|-|....+++++.|+.+++|-..++   .+.++...||..+
T Consensus       258 p~las~~~~G~m~~wDLe~kkl~~v~~-nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P  336 (910)
T KOG1539|consen  258 PLLASGRSNGDMAFWDLEKKKLINVTR-NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP  336 (910)
T ss_pred             eeEEeccCCceEEEEEcCCCeeeeeee-ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence            468888889999999999888777665 222446888999999999999999999998865543   2345555666665


Q ss_pred             ccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224          670 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  749 (1120)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  749 (1120)
                      ..        ++..++                                ..+..+.+++.|++.+.+++...........+
T Consensus       337 p~--------~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~  376 (910)
T KOG1539|consen  337 PS--------CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQL  376 (910)
T ss_pred             ch--------heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence            43        222222                                45678889999999988887643322222110


Q ss_pred             cc-----------CCccccccEEEEEEcCCC----ceEEEec-cCceEEEeeecccccCCCCccccccCceeecCCCCCc
Q 001224          750 RL-----------PENLRATKISRLIFTNSG----NAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  813 (1120)
Q Consensus       750 ~~-----------~~~~~~~~i~~l~~s~~g----~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~  813 (1120)
                      ..           .......+|..+++....    ..++++. .+...+.|+++...                   .|+.
T Consensus       377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~  437 (910)
T KOG1539|consen  377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRH  437 (910)
T ss_pred             ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccE
Confidence            00           111233456666665421    2244444 45778888875431                   1111


Q ss_pred             ccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224          814 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSS  889 (1120)
Q Consensus       814 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~  889 (1120)
                      ....-........+++++.++.|++.+.|. .|.|-+|++++|-....+   ..|..+|+.++... -++.+++++.+|.
T Consensus       438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi  516 (910)
T KOG1539|consen  438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI  516 (910)
T ss_pred             EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcce
Confidence            110000011456789999999999999998 899999999999888888   58999999999988 7889999999999


Q ss_pred             EEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          890 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       890 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                      +.+||..+..++..++- ...++++..+.....++.+..|-.|+++|+.+     .+....+.||..   .|++++||||
T Consensus       517 lkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~D  587 (910)
T KOG1539|consen  517 LKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPD  587 (910)
T ss_pred             EEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCC
Confidence            99999998887777763 45688899998889999999999999999998     345677788875   9999999999


Q ss_pred             CcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEc
Q 001224          970 QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1030 (1120)
Q Consensus       970 g~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~ 1030 (1120)
                      |++|++ +.|++|++||+.++.++..+..   ..+++++.|||+|.+||++..| .-|++|-=
T Consensus       588 grWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999 5899999999999999988764   6799999999999999999998 56999963

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.1e-35  Score=317.74  Aligned_cols=601  Identities=14%  Similarity=0.172  Sum_probs=408.5

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC---eEEEEE
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY  445 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~  445 (1120)
                      ...|.|.+  ++|.|. ...|.+||..+.....                   .+.||..+|+|+.|-|+.+   ++++|+
T Consensus        19 v~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~   76 (764)
T KOG1063|consen   19 VSSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD   76 (764)
T ss_pred             cccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence            34556665  355544 5799999987763333                   4899999999999999888   899999


Q ss_pred             CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCeEEEe-
Q 001224          446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC-  522 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~-  522 (1120)
                      .|+.|++|.++... +.....+.+|...+.|+.  ..-.  .....+.|+++.+||.+..+  +...+.-..+.+..+| 
T Consensus        77 sD~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL  151 (764)
T KOG1063|consen   77 SDGRVILWKLRDEY-LIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL  151 (764)
T ss_pred             CCCcEEEEEEeehh-eEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence            99999999999433 556667888776666654  2222  22223789999999986555  3334433333444444 


Q ss_pred             -eccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          523 -PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       523 -~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                       +.+.++.-.++.|+.+..|.++.-...  .....+.+|..+|.+++|...+.                  +.-+|+++|
T Consensus       152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S  213 (764)
T KOG1063|consen  152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS  213 (764)
T ss_pred             hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence             334333334555666777777754432  34457889999999999987664                  223688899


Q ss_pred             CCCeEEEEECCCCc---------------------eeEEEe--------cCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224          600 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  650 (1120)
                      .|..||||.+.-+.                     ....+.        ..+|...|.++.|+|.+..|++++.|.++.+
T Consensus       214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii  293 (764)
T KOG1063|consen  214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII  293 (764)
T ss_pred             CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence            99999999874322                     010111        1245678999999999999999999999999


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      |...+..-... -...-+.              .+      +              ..+--....+++++..+++-+..|
T Consensus       294 W~pd~~tGiWv-~~vRlGe--------------~g------g--------------~a~GF~g~lw~~n~~~ii~~g~~G  338 (764)
T KOG1063|consen  294 WKPDENTGIWV-DVVRLGE--------------VG------G--------------SAGGFWGGLWSPNSNVIIAHGRTG  338 (764)
T ss_pred             EecCCccceEE-EEEEeec--------------cc------c--------------cccceeeEEEcCCCCEEEEecccC
Confidence            97654311100 0000000              00      0              000012345677888999999999


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  810 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~  810 (1120)
                      ..++|....   ....... ..-.+|...|+.++|.|.|.++++++.|.+-|++---..+.             -|..  
T Consensus       339 g~hlWkt~d---~~~w~~~-~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wHE--  399 (764)
T KOG1063|consen  339 GFHLWKTKD---KTFWTQE-PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWHE--  399 (764)
T ss_pred             cEEEEeccC---ccceeec-cccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------ceee--
Confidence            999999322   1111111 11257999999999999999999999999988875321000             0110  


Q ss_pred             CCcccccCCCCCCCCCccEEEEccCCCEEEEEeC-CcEEEEEcC------------------------------------
Q 001224          811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM------------------------------------  853 (1120)
Q Consensus       811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sd-g~i~vwd~~------------------------------------  853 (1120)
                         +   -...-|....+|++|-+....+++|.| ..+|+|+..                                    
T Consensus       400 ---i---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa  473 (764)
T KOG1063|consen  400 ---I---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKA  473 (764)
T ss_pred             ---e---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCC
Confidence               0   011127778888888775556666664 557777731                                    


Q ss_pred             -------CCce---------------------------------eeeecCCCCCeEEEEEecCCCcEEEEEeCC-----C
Q 001224          854 -------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDD-----S  888 (1120)
Q Consensus       854 -------~~~~---------------------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g  888 (1120)
                             +|..                                 +..+-+|..+|.+++.+| +++++|+++..     .
T Consensus       474 ~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehA  552 (764)
T KOG1063|consen  474 FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHA  552 (764)
T ss_pred             CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccce
Confidence                   0000                                 011335778899999999 99999999854     3


Q ss_pred             cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          889 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       889 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      .|++|+..+......+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ......|..   -|-++.|+|
T Consensus       553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~p  628 (764)
T KOG1063|consen  553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSP  628 (764)
T ss_pred             EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccce---EEEEcccCc
Confidence            6899999999888999999999999999999999999999999999998654433222 223444443   578899999


Q ss_pred             CCcEEEE-EeCCeEEEEEcCCc--eeeeccccCCCCCCeeEEEECC-----CCcEEEEEEcCCcEEEEEcCC-------c
Q 001224          969 DQIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAAN-------L 1033 (1120)
Q Consensus       969 dg~~la~-~~d~~v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~iwd~~~-------~ 1033 (1120)
                      ++.++++ +.|++|++|.....  +.+..+....+..+|+.++|.|     .+..+++|-+.|.|.+|....       +
T Consensus       629 de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~  708 (764)
T KOG1063|consen  629 DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG  708 (764)
T ss_pred             ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce
Confidence            9999999 59999999999888  6666655557899999999987     233678888999999999651       1


Q ss_pred             ceeeeeCCCcccCCCCCCCCccceEEEecCCC-------C--CEEEEEeCCCcEEEEecC
Q 001224         1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE-------P--NEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d-------~--~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      ............  +| ...|.  .+.|.|..       .  ..|++|++|.+++++++.
T Consensus       709 ~~~~~~~l~~~~--~~-~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  709 TFNLDTRLCATI--GP-DSAVN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             eeeecccccccc--Ch-HHhhh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            111111111111  11 22244  78888741       2  247999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.9e-35  Score=315.84  Aligned_cols=604  Identities=13%  Similarity=0.138  Sum_probs=401.7

Q ss_pred             eeeeccCCCCceEEEEecCCC---eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~---~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      +..+-+|..+|+|+.|-|+.+   + +++|+.||.|++|.++........                 .+.+|...  +++
T Consensus        47 ~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~--~~c  106 (764)
T KOG1063|consen   47 VTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKE--CVC  106 (764)
T ss_pred             EEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCccee--EEE
Confidence            344445999999999999886   4 899999999999999843333211                 24556544  444


Q ss_pred             EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeeccc--ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC--ceeE
Q 001224          434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY  509 (1120)
Q Consensus       434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~--~~~~  509 (1120)
                      ++.......+.+.|+++.+||.+..+.. ....++--  ..--.|+++.++.+..+++.|+.+..|.++.-.++  +.+.
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~  185 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA  185 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence            4444334444478999999999655421 11122211  22335677778666557888888888988876644  4456


Q ss_pred             EeeccccCeEEEeeccCCC-ceEEEEEecCCeEEEEecCCCCCcee------eeC-CCCceeEE----EEcCCCCeEEec
Q 001224          510 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVD------YEA-PGRWCTTM----AYSADGTRTYQG  577 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~-~~~~v~~~----~~s~~g~~~~~~  577 (1120)
                      .+.||.+.|.+++|..... .-+|++++.|..||+|.+.-......      ... ...++..+    .+.-.-..++.|
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            8899999999999865543 46889999999999998754331110      000 00111100    000000022334


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeEEE--ecC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~--~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                      |.+ -+..+.|+|.+..|++++.|.++.+|...+..  .+...  ... +.........|+|++..+++-+..|..++|.
T Consensus       266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            443 67778888888889999999999999887652  22222  111 1223467899999999999999999999998


Q ss_pred             ccCcc--hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          653 TSDGI--RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       653 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      ..+..  .....+.||...+.                                         ++...|.|+++++.+.|.
T Consensus       345 t~d~~~w~~~~~iSGH~~~V~-----------------------------------------dv~W~psGeflLsvs~DQ  383 (764)
T KOG1063|consen  345 TKDKTFWTQEPVISGHVDGVK-----------------------------------------DVDWDPSGEFLLSVSLDQ  383 (764)
T ss_pred             ccCccceeeccccccccccce-----------------------------------------eeeecCCCCEEEEecccc
Confidence            33321  12233344444332                                         344567789999999999


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccc----------------cCCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE----------------RNSS  794 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~----------------~~~~  794 (1120)
                      +-|+|---..+.  ....+.-| +.|...+++++|-+....+++++....+|+|+....-                ..++
T Consensus       384 TTRlFa~wg~q~--~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~  460 (764)
T KOG1063|consen  384 TTRLFARWGRQQ--EWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD  460 (764)
T ss_pred             ceeeeccccccc--ceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence            999986552111  12222222 3588889999999876778888889999999875320                0000


Q ss_pred             Ccccccc-----------------------C------ceeecCCCCC-cccc-----cCCCCCCCCCccEEEEccCCCEE
Q 001224          795 GKATASV-----------------------A------PQLWQPPSGI-MMTN-----DVTDSNPEEAVPCFALSKNDSYV  839 (1120)
Q Consensus       795 ~~~~~~~-----------------------~------~~~w~~~~g~-~~~~-----~~~~~~~~~~v~~l~~s~d~~~l  839 (1120)
                      +......                       +      ..+..+.... +...     ..+-.+|...|.+++.+|+++++
T Consensus       461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli  540 (764)
T KOG1063|consen  461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI  540 (764)
T ss_pred             ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence            0000000                       0      0011111110 0000     00113599999999999999999


Q ss_pred             EEEe-C-----CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce----eeEeeccccc
Q 001224          840 MSAS-G-----GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE----VKSKLKGHSK  909 (1120)
Q Consensus       840 ~~~s-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h~~  909 (1120)
                      |++. .     ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|+++.+|......    .....+.|+.
T Consensus       541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR  619 (764)
T KOG1063|consen  541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR  619 (764)
T ss_pred             eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccce
Confidence            9986 2     3499999999999999999999999999999 99999999999999999986432    1234678999


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-----CcEEEEE-eCCeEEE
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVV-HETQLAI  983 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-----g~~la~~-~d~~v~i  983 (1120)
                      -|++..|+||+.+++|+|+|.+|+||...............    ......|+++++.|-     +..+++| ..|.|.+
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~----~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC----LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL  695 (764)
T ss_pred             EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch----hccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence            99999999999999999999999999988762111111011    111247888888772     2255667 7799999


Q ss_pred             EEcCCcee----------eeccccCCCCCCeeEEEECCC----------CcEEEEEEcCCcEEEEEcC
Q 001224          984 FETTKLEC----------VKQWVPRESSAPITHATFSCD----------SQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       984 ~d~~~~~~----------~~~~~~~~h~~~v~~l~~s~d----------g~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      |....-..          .+.-...+|.+.|..+.|+|.          ...|++|++|..++|++++
T Consensus       696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  696 WRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             EecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            99651111          011112256889999999975          2357999999999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-36  Score=288.39  Aligned_cols=256  Identities=20%  Similarity=0.288  Sum_probs=218.7

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      .+|++.|+.++..+.+..++++++.|.++.+|++.......-...              ..+.||...|..++.++||++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--------------r~~~GHsH~v~dv~~s~dg~~   77 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--------------RRLTGHSHFVSDVVLSSDGNF   77 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--------------eeeeccceEecceEEccCCce
Confidence            349999999999999888999999999999999976432221111              148899999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc--ccCe
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAPV  518 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h--~~~v  518 (1120)
                      .++++.|+++++||+.+++..+   .|.||...|.+++|++|++  .+++|+.|++|++||+.. .+..++..+  .+.|
T Consensus        78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWV  151 (315)
T ss_pred             EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecCCCcCcE
Confidence            9999999999999999997555   6889999999999999999  499999999999999664 444454433  7899


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.++++|||.                     ..++|
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcasG  210 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCASG  210 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEecC
Confidence            999999998778999999999999999999998888899988888888888876                     68889


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhh
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  662 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  662 (1120)
                      +.||.+.+||++.++.+..+.+.   ..|.+++|+|+...|+.+.. ..|+|||+.++ .++..
T Consensus       211 gkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~  269 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEE  269 (315)
T ss_pred             CCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeeccC-CceEEEeccch-hhhhh
Confidence            99999999999999998888643   46999999999877777665 56999999887 44433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-35  Score=306.52  Aligned_cols=471  Identities=17%  Similarity=0.210  Sum_probs=351.0

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      +..+...|.++.|+|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-+.-+  ++++|++|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            45588999999999999999999999999999999988776   5666778999999998877  899999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ..+++.++.|.+|.+.|.+++.||..  .++++++.|-+|++||++.. .+.+++.+|.+.|..++|.|...        
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------  153 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------  153 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence            99999999999999999999998876  69999999999999999875 46678999999999999999876        


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcch
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                                  +.+++++-|++|++|++.+..+..++++|.  ..|+|+.|-+  |..+|++|++|.+++|||..+. .
T Consensus       154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~  218 (794)
T KOG0276|consen  154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S  218 (794)
T ss_pred             ------------cceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence                        679999999999999999999999998664  4899999987  4579999999999999999887 7


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      ++++++|                                                                         
T Consensus       219 CV~TLeG-------------------------------------------------------------------------  225 (794)
T KOG0276|consen  219 CVQTLEG-------------------------------------------------------------------------  225 (794)
T ss_pred             HHHHhhc-------------------------------------------------------------------------
Confidence            7777755                                                                         


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                                       |...|..+.|+|.-..++++++||+++||.-.+-..                      .. .+
T Consensus       226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l----------------------E~-tL  265 (794)
T KOG0276|consen  226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL----------------------EK-TL  265 (794)
T ss_pred             -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------------------hh-hh
Confidence                             566778889999999999999999999997532111                      00 01


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEE----EEeCCCcEEEEE
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN  894 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la----sg~~dg~v~vwd  894 (1120)
                      .  ..-+.+.|++-.+.+..+++|.|....+..+....+...+....    .+.|+. .+....    +.+.++     +
T Consensus       266 n--~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~g----KIiwa~-~~ei~~~~~ks~~~~~-----e  333 (794)
T KOG0276|consen  266 N--YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNG----KIIWAV-HSEIQAVNLKSVGAQK-----E  333 (794)
T ss_pred             h--cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCc----cEEEEc-CceeeeeeceeccCcc-----c
Confidence            1  14567999999999999999997666666665555444443111    122322 111111    111111     2


Q ss_pred             eecceeeE----eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          895 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       895 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      +..|+.+.    .+-.-.-.-..++-||+|++++.|+ ||.-+||..-....          .   ..+.-...+|++|.
T Consensus       334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn----------K---~fG~~~eFvw~~ds  399 (794)
T KOG0276|consen  334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRN----------K---AFGSGLEFVWAADS  399 (794)
T ss_pred             ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhh----------c---ccccceeEEEcCCC
Confidence            33333221    1111111123577889998887665 88888987433111          1   11345788999997


Q ss_pred             cEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224          971 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus       971 ~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
                      ...++ -+++.|+++  ++.+..+.+.+..+..      +--.|. |+....++.+++||.+++++++++.         
T Consensus       400 ne~avRes~~~vki~--knfke~ksi~~~~~~e------~i~gg~-Llg~~ss~~~~fydW~~~~lVrrI~---------  461 (794)
T KOG0276|consen  400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMSAE------GIFGGP-LLGVRSSDFLCFYDWESGELVRRIE---------  461 (794)
T ss_pred             CeEEEEecCCceEEE--ecceecccccccccee------eecCCc-eEEEEeCCeEEEEEcccceEEEEEe---------
Confidence            77776 578999999  7777777776443211      111344 4445557889999999999999998         


Q ss_pred             CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                          +.+-.+.|+. +|.+++.++ |.+.++..+..
T Consensus       462 ----v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~  491 (794)
T KOG0276|consen  462 ----VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA  491 (794)
T ss_pred             ----eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence                4455788986 466776666 55566666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-35  Score=283.89  Aligned_cols=287  Identities=17%  Similarity=0.290  Sum_probs=244.0

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      ...+|+||.+.|.++.|++|.+  .+++++.||.+.|||.-+....+.+.-....|..++|+|+  |+++++|+.|+...
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNKCS  122 (343)
T ss_pred             eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC--CCeEEecCcCceeE
Confidence            3357999999999999999999  6999999999999999999999988888899999998655  47999999999999


Q ss_pred             EEecCCCC------CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 001224          543 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT  616 (1120)
Q Consensus       543 iwd~~~~~------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  616 (1120)
                      ||++.+..      ....+.+|.+.+.+..|..|+.                      |++++.|.+..+||+++++.+.
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence            99998652      2335677777777777777654                      9999999999999999999999


Q ss_pred             EEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224          617 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  695 (1120)
Q Consensus       617 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1120)
                      .+.+|.+  .|.+++++| +++.+++|+-|+..++||++.+ ...+.|.                               
T Consensus       181 ~f~GH~g--DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~-------------------------------  226 (343)
T KOG0286|consen  181 VFHGHTG--DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFE-------------------------------  226 (343)
T ss_pred             EecCCcc--cEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeec-------------------------------
Confidence            9986654  799999999 9999999999999999999877 3333221                               


Q ss_pred             ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224          696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  775 (1120)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  775 (1120)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (343)
T KOG0286|consen  227 --------------------------------------------------------------------------------  226 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224          776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  854 (1120)
Q Consensus       776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~  854 (1120)
                                                                    +|+..|.+++|.|+|.-+++|+ |++.++||++.
T Consensus       227 ----------------------------------------------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  227 ----------------------------------------------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             ----------------------------------------------ccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence                                                          1566666666667777777777 67777777776


Q ss_pred             CceeeeecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCE
Q 001224          855 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL  932 (1120)
Q Consensus       855 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v  932 (1120)
                      .+.+..+..  ...+|++++||. .|++|.+|..|..+.+||.-.++.+..|.||.++|+++..+|||.-|+||+.|.++
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence            666666652  245799999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEE
Q 001224          933 CVWS  936 (1120)
Q Consensus       933 ~iWd  936 (1120)
                      +||.
T Consensus       340 riW~  343 (343)
T KOG0286|consen  340 RIWA  343 (343)
T ss_pred             eecC
Confidence            9994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=283.35  Aligned_cols=296  Identities=15%  Similarity=0.228  Sum_probs=249.3

Q ss_pred             ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224          754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  832 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~  832 (1120)
                      .+|.+.|..++..+. ...+++++.|..+.+|++...                 |.+.|..... +.+  |...|..+++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~   71 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL   71 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence            469999999999887 556788889999999998543                 2233433332 444  9999999999


Q ss_pred             ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc--cc
Q 001224          833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK  909 (1120)
Q Consensus       833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~  909 (1120)
                      ++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|.+|++... +..++..+  .+
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~  149 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE  149 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence            99999999999 99999999999999999999999999999999 8999999999999999998754 44444433  78


Q ss_pred             ceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001224          910 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  986 (1120)
Q Consensus       910 ~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~  986 (1120)
                      -|+|+.|+|+  ..+|++++.|++|++||+++.+     ....+.||..   .++.+++||||.+.++ +.||.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            8999999998  7899999999999999999843     4555666664   8999999999999999 59999999999


Q ss_pred             CCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCC
Q 001224          987 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1066 (1120)
Q Consensus       987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~ 1066 (1120)
                      +.++.+..+   +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+....+. .....+..++++|++ ||
T Consensus       222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s-~~~~~~~clslaws~-dG  295 (315)
T KOG0279|consen  222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS-SKAGDPICLSLAWSA-DG  295 (315)
T ss_pred             cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc-cccCCcEEEEEEEcC-CC
Confidence            999997766   578999999999997777755 466799999999999988875544442 234447788999999 79


Q ss_pred             CEEEEEeCCCcEEEEecCC
Q 001224         1067 NEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1067 ~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      ..|+.|-.|+.|++|.+..
T Consensus       296 ~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cEEEeeecCCcEEEEEeec
Confidence            9999999999999998753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.5e-35  Score=290.41  Aligned_cols=339  Identities=17%  Similarity=0.248  Sum_probs=284.1

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+..|++.|.+++.+|+.+++|+|+.|....||++.+|....   .+.+|.+.|+++.|+.||.  +|+||+.+|.|+||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~  133 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF  133 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence            377899999999999999999999999999999999998554   7899999999999999999  89999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ...++.....+...-..+.=++|||..  .+|++|+.||.+-+|.+.+......+.+|..++++-.|.|+|+        
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--------  203 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--------  203 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence            999999998887666778788998744  7999999999999999998877788888888888888887776        


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                   .++++..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++.+..++ +.+
T Consensus       204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv  268 (399)
T KOG0296|consen  204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV  268 (399)
T ss_pred             -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence                         699999999999999999999998875443 45788999999999999999999888876555 111


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ....+                                                                           
T Consensus       269 ~~~n~---------------------------------------------------------------------------  273 (399)
T KOG0296|consen  269 NCNNG---------------------------------------------------------------------------  273 (399)
T ss_pred             EecCC---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                 .+..+...                                          .  
T Consensus       274 ---------------------------~~~~l~~~------------------------------------------~--  282 (399)
T KOG0296|consen  274 ---------------------------TVPELKPS------------------------------------------Q--  282 (399)
T ss_pred             ---------------------------CCcccccc------------------------------------------c--
Confidence                                       00000000                                          0  


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      ......|.++.++..-.+.|+|+ ||+|.|||+...+....+. |..+|+.+.|-+  ..+|++++.||.|+.||.++|+
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence            00233455556666777889999 9999999999866655554 888899999987  5689999999999999999999


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      ++.++.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-34  Score=310.46  Aligned_cols=489  Identities=17%  Similarity=0.276  Sum_probs=342.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ....|..++|+|...+ +.++-..|.|++||.+=+..+.+                   +.+|.++|..++|+|++.+++
T Consensus         8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence            4678999999999996 88889999999999998887764                   788999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  522 (1120)
                      ||+.|..|+||++++.+++-   +|.||-+-|..+.|.+.-.  +++++|+|.+|+||++++++++..+.||...|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999977554   8999999999999999888  899999999999999999999999999999999999


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC-CCceeEEE-----E-cCCC--CeEEecccccceeEEEEcCCCC
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMA-----Y-SADG--TRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~-----~-s~~g--~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      |+|..|  .++++|.|.+||+||+...+....-.+. ...+....     | .+|-  +.++.||. ..++-++|+|.-.
T Consensus       143 FhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  143 FHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP  219 (1202)
T ss_pred             cCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence            998874  8999999999999999754332211110 00000000     0 0111  14455554 4788899999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccccc
Q 001224          594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  673 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  673 (1120)
                      .+++|++|..|++|.+...+....-...+|.+.|.++-|+|...++++.+.|++|++||+... ..++.++         
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfr---------  289 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFR---------  289 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeee---------
Confidence            999999999999999876553333233455668999999999999999999999999998755 2222221         


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224          674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  753 (1120)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  753 (1120)
                                                                                                      
T Consensus       290 --------------------------------------------------------------------------------  289 (1202)
T KOG0292|consen  290 --------------------------------------------------------------------------------  289 (1202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                       ....+...++.+|..+ +++++.|+-+.||.++.                                   ..+  +.++ 
T Consensus       290 -rendRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erp--a~~v-  329 (1202)
T KOG0292|consen  290 -RENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERP--AYAV-  329 (1202)
T ss_pred             -ccCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCc--eEEE-
Confidence             1335667788899998 55566666667776621                                   122  2333 


Q ss_pred             cCCCEEEEEeCCcEEEEEcCCCcee--eeecCC---CCCeEEEEEecCCCcEEEEEeCC-CcEEEEEeecceee-----E
Q 001224          834 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGMDD-SSIQIYNVRVDEVK-----S  902 (1120)
Q Consensus       834 ~d~~~l~~~sdg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~lasg~~d-g~v~vwd~~~~~~~-----~  902 (1120)
                       ++..+....|..|+-+|+.+.+..  ..++..   ..++.++.++|..+..|++...| |..-++.+.+....     .
T Consensus       330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~  408 (1202)
T KOG0292|consen  330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD  408 (1202)
T ss_pred             -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence             234455555889999999874432  334332   35789999999555555554433 34445544332100     0


Q ss_pred             eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001224          903 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA  982 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~  982 (1120)
                      ..++  ....++-.+. +++.+---.+..+.+-++.....   +.+...       ..+..+-+...|.+|+. ....|.
T Consensus       409 ~~k~--tG~~a~fvar-Nrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~  474 (1202)
T KOG0292|consen  409 VKKG--TGEGALFVAR-NRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVT  474 (1202)
T ss_pred             hhcC--CCCceEEEEe-cceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEE
Confidence            1111  1122222222 22333222345566666554221   111111       13345556666665554 456899


Q ss_pred             EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      +||+.....+..+.    -..|..+.||+|..+++--+ -.+|.|.+
T Consensus       475 lfdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~  516 (1202)
T KOG0292|consen  475 LFDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD  516 (1202)
T ss_pred             EEEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence            99999998888876    56899999999998776554 34566665

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=289.60  Aligned_cols=511  Identities=19%  Similarity=0.246  Sum_probs=367.6

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCc--------EEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD--------IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  427 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  427 (1120)
                      ..+...+|+..|.|++.+||.- ++++|...|+        |+|||..+-..++                   ++..-..
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~  155 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDR  155 (626)
T ss_pred             hcccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeee-------------------eeccccc
Confidence            4566788999999999999988 4888877663        9999987766665                   3555667


Q ss_pred             ceEEEEEcC--CCCeEEEE--ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          428 SVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       428 ~V~~l~~sp--dg~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      .|.|++||+  .|.+|+..  +.+..+.+||+..+.....   ...-...|...+|.|.+.. ++++++ .+.+..|+.+
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~  230 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLR  230 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEcc
Confidence            899999999  45666654  4566799999998776553   3334568999999999987 566665 5789999999


Q ss_pred             CCceeEE---eecc-ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          504 NGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       504 ~~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      .+...++   ++.+ ...|.|++|.++.   -+++|..+|.|.+|+............|.+.|.+++...+|.       
T Consensus       231 ~~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------  300 (626)
T KOG2106|consen  231 GGSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------  300 (626)
T ss_pred             CCceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-------
Confidence            8876653   3333 3668999986554   389999999999999977665555558888899998888887       


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  659 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  659 (1120)
                                     |++|+.|..|..|| ..-+.+...+.......++.++=...+  +++|+..+.|..=.+.++.. 
T Consensus       301 ---------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~-  361 (626)
T KOG2106|consen  301 ---------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFT-  361 (626)
T ss_pred             ---------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCce-
Confidence                           88899999999999 454555555555555567666544333  66776655554333332210 


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                                             .                                                        
T Consensus       362 -----------------------~--------------------------------------------------------  362 (626)
T KOG2106|consen  362 -----------------------L--------------------------------------------------------  362 (626)
T ss_pred             -----------------------E--------------------------------------------------------
Confidence                                   0                                                        


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                  ...+|......++.+|+...+++++.|+.+++|+-..               .+|...          
T Consensus       363 ------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~----------  405 (626)
T KOG2106|consen  363 ------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI----------  405 (626)
T ss_pred             ------------EEEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE----------
Confidence                        0033667888899999999999999999999997210               123221          


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                         ...++.|+.|+|.| .+|.|. .|...+.|.++...+. +.....++++|+|+| +|.+||.|+.|+.|+||.+..+
T Consensus       406 ---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  406 ---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             ---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCC
Confidence               45678899999999 899998 8999999999855444 443478899999999 9999999999999999998753


Q ss_pred             e-eeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          899 E-VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       899 ~-~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      . ..... +.|.++|+.+.||+|+++|.+-+.|-.|..|.... -+..              .++..+.|....-.|  |
T Consensus       480 g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~--------------ts~kDvkW~t~~c~l--G  542 (626)
T KOG2106|consen  480 GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI--------------TSVKDVKWATYTCTL--G  542 (626)
T ss_pred             CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc--------------ceecceeeeeeEEEE--E
Confidence            2 22222 33458999999999999999999999999993322 1110              012333332111100  0


Q ss_pred             eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                          ..+            ....|...|..++-+.+.+++|+|.+.|.|++|...--+..+...    .-.+|++. +. 
T Consensus       543 ----F~v------------~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt-  600 (626)
T KOG2106|consen  543 ----FEV------------FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT-  600 (626)
T ss_pred             ----EEE------------ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce----eeccccce-eE-
Confidence                000            113567788888999999999999999999999976544443211    22244333 54 


Q ss_pred             eEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1057 LVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1057 ~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                       .++|.-.| ..|++.+.|.+|..|++
T Consensus       601 -~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  601 -NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             -EEEEeeCC-ceEEecCCCceEEEEEe
Confidence             79999855 56666669999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-35  Score=290.42  Aligned_cols=273  Identities=17%  Similarity=0.280  Sum_probs=238.1

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ...+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+...                   .+.||++.|..|+|+.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a  160 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA  160 (406)
T ss_pred             hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence            345667999999999999988 79999999999999999999855                   4899999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  516 (1120)
                      .|++||+++.|-.+++||.++.  .++...+.+|...|.+++|-|.|.  ++++++.|.+|+.|++.+|.++.++.+|..
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence            9999999999999999999873  234447889999999999999998  799999999999999999999999999999


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|..+..  ..||.++++++.|.+|++|-+.+..+...+..|...|.+++|.|....--.....+.      ...+.++.
T Consensus       237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~  308 (406)
T KOG0295|consen  237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG  308 (406)
T ss_pred             hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence            9998885  678899999999999999999999999999999999999999887641100000000      01346899


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                      +++.|++|++||+.++.++.++.+|..  .|..++|+|.|+||+++.+|+++++||+++. ++++.+.
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~  373 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE  373 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence            999999999999999999999997755  8999999999999999999999999999888 5555554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-34  Score=269.59  Aligned_cols=229  Identities=20%  Similarity=0.296  Sum_probs=188.7

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccC
Q 001224          378 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  457 (1120)
Q Consensus       378 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~  457 (1120)
                      -||++++.|.+|++|...+|.+..+                   +....+.|+.+...||+++||+++.. .|++||+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence            3899999999999999999998864                   44456789999999999999999865 599999999


Q ss_pred             CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec
Q 001224          458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  537 (1120)
Q Consensus       458 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  537 (1120)
                      +..- +..++.+|.+.|+++.|-.||+  .++|||+||+++|||++...+.+.++ |..+|++++.+|..  ..|++|..
T Consensus        71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq  144 (311)
T KOG0315|consen   71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ  144 (311)
T ss_pred             CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence            8754 5668999999999999999999  89999999999999999977777776 77999999987655  57999999


Q ss_pred             CCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---
Q 001224          538 DGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---  613 (1120)
Q Consensus       538 dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---  613 (1120)
                      +|.|++||+....+...+.. ....                     +..+.+.|+|..++++...|..++|++-++.   
T Consensus       145 sg~irvWDl~~~~c~~~liPe~~~~---------------------i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPEDDTS---------------------IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCcEEEEEccCCccccccCCCCCcc---------------------eeeEEEcCCCcEEEEecCCccEEEEEccCCCccc
Confidence            99999999987655443322 2233                     4445555555689999999999999987654   


Q ss_pred             ---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          614 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       614 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                         ++..++.|.  ..+..+.+|||+++|++++.|.+++||+..+
T Consensus       204 ~l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  204 ELEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             cceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence               344455443  4688999999999999999999999998654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.8e-33  Score=262.79  Aligned_cols=295  Identities=14%  Similarity=0.265  Sum_probs=242.8

Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCcee
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT  563 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~  563 (1120)
                      .+|+++|.|.+||+|...+|.|.++++...+.|..+++.+  ++..|++++. ..||+||+++..+  +.++.+|.+.|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            4899999999999999999999999998889999999854  5567777764 7899999998654  567777777777


Q ss_pred             EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224          564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                      .+.|..+|+                     ++++|++||+++|||++...+...++..   .+|+++..+|+...|++|.
T Consensus        88 aVgF~~dgr---------------------WMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d  143 (311)
T KOG0315|consen   88 AVGFQCDGR---------------------WMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD  143 (311)
T ss_pred             EEEEeecCe---------------------EEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence            777766665                     8999999999999999997776666533   4799999999999999999


Q ss_pred             CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcce
Q 001224          644 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  723 (1120)
Q Consensus       644 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  723 (1120)
                      .+|.|++||+... .+...+                                                            
T Consensus       144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------  162 (311)
T KOG0315|consen  144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------  162 (311)
T ss_pred             CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence            9999999999765 121111                                                            


Q ss_pred             eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224          724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  803 (1120)
Q Consensus       724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  803 (1120)
                                                 .|  .....|.++.+.|||++++++...|..++|++-.....           
T Consensus       163 ---------------------------iP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------  202 (311)
T KOG0315|consen  163 ---------------------------IP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------  202 (311)
T ss_pred             ---------------------------CC--CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence                                       11  13467889999999999999999999999998542211           


Q ss_pred             eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC-ceeeeecCCCCCeEEEEEecCCCcEE
Q 001224          804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII  881 (1120)
Q Consensus       804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l  881 (1120)
                            +.......++  .|...+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|..-+..++||. |++||
T Consensus       203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl  273 (311)
T KOG0315|consen  203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL  273 (311)
T ss_pred             ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence                  1111111122  3889999999999999999998 999999999987 55677889999999999999 99999


Q ss_pred             EEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224          882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       882 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      ++|+.|+.+++|++..++.++...+|.....|++..
T Consensus       274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999999999888887764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=285.31  Aligned_cols=301  Identities=22%  Similarity=0.327  Sum_probs=267.7

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|..+|+.+-|.|+-..+++++.|++|++||..+++..+   .|+||.+.|..|+|+..|+  ++++++.|-.+++|
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW  177 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence            477899999999999999999999999999999999999755   7999999999999999999  89999999999999


Q ss_pred             ECCC-CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          501 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       501 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      |..+ .++++.+.+|...|.+++|.|.+  .++++++.|.+|+.|++.++-++.++.+|..+|..+....||.       
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-------  248 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-------  248 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence            9987 78889999999999999998765  6999999999999999999999999999999888888888775       


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  659 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  659 (1120)
                                    .+++++.|.+|++|-+.++++...+..|.+  .|.|++|.|...+  ..          +      
T Consensus       249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~----------i------  294 (406)
T KOG0295|consen  249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS----------I------  294 (406)
T ss_pred             --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc----------h------
Confidence                          789999999999999999988888887766  6788888775321  00          0      


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                                            .                                                         
T Consensus       295 ----------------------~---------------------------------------------------------  295 (406)
T KOG0295|consen  295 ----------------------S---------------------------------------------------------  295 (406)
T ss_pred             ----------------------h---------------------------------------------------------
Confidence                                  0                                                         


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                                      -+++                                            
T Consensus       296 --------------------------------~at~--------------------------------------------  299 (406)
T KOG0295|consen  296 --------------------------------EATG--------------------------------------------  299 (406)
T ss_pred             --------------------------------hccC--------------------------------------------
Confidence                                            0000                                            


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                         ..+         .+.++.+++ |++|++||+.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++
T Consensus       300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence               000         345788888 99999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ++..++..|..-|+++.|+.+..+++||+-|.++++|.-
T Consensus       367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999963

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.8e-33  Score=275.45  Aligned_cols=331  Identities=15%  Similarity=0.182  Sum_probs=261.9

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+..|++.|.+++.+|+.+ |++||+.|..-.||+..+|+...                   .+.+|++.|+++.||.|
T Consensus        58 ~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshd  117 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHD  117 (399)
T ss_pred             eehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccC
Confidence            34556999999999999776 79999999999999999999766                   38899999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      |.+||+|+.+|.|+||+..++....   .+...-+.|.=+.|.|-+.  +|+.|+.||.+.+|.+.++...+.+.||..+
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence            9999999999999999999998665   4445567788899999888  8999999999999999998888999999999


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      +++=+|.|  +|+.++++..||+|++|+..+..+...+....                    .....++.++..+..++.
T Consensus       193 ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  193 CTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cccccccC--CCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCccccccccceeEe
Confidence            99988854  57999999999999999999987766554322                    113334445555557888


Q ss_pred             EeCCCeEEEEECCCCceeEEEecCC---------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224          598 AGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       598 ~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      |+.++.+++-+..+|+.+....+..         ....|..+.++..-.+.|+|+-||+|.|||+...            
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------------  318 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------------  318 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc------------
Confidence            8899999998888888776665210         0111222233333444555555555555554321            


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                                      
T Consensus       319 --------------------------------------------------------------------------------  318 (399)
T KOG0296|consen  319 --------------------------------------------------------------------------------  318 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  828 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~  828 (1120)
                                                                                     ++..  .  ..|...|.
T Consensus       319 ---------------------------------------------------------------~~R~--~--c~he~~V~  331 (399)
T KOG0296|consen  319 ---------------------------------------------------------------TLRH--I--CEHEDGVT  331 (399)
T ss_pred             ---------------------------------------------------------------hhhe--e--ccCCCceE
Confidence                                                                           0000  0  01677788


Q ss_pred             EEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          829 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      .+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus       332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            888888 56777777 99999999999999999999999999999999 99999999999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-33  Score=270.29  Aligned_cols=297  Identities=20%  Similarity=0.322  Sum_probs=241.5

Q ss_pred             ccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          418 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       418 ~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      ....+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++....  .....+++|.+.|..+.|.+|+.  .++++|.|++|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v  114 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV  114 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence            344688999999999999999999999999999999976543  23446889999999999999999  79999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      +.||+++|++++.+++|...|.+++.. ..+-.++.+++.||++++||++..+.+.++.. ..                 
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-ky-----------------  175 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KY-----------------  175 (338)
T ss_pred             EEEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ce-----------------
Confidence            999999999999999999999998832 23335778889999999999998776655432 22                 


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                          ++.++.|..++..+++|+-|+.|++||++.+.....+.+|..  .|+.+..+++|.++.+-+.|.++++||++.-.
T Consensus       176 ----qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  176 ----QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             ----eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccC
Confidence                344455555556899999999999999999999999987754  89999999999999999999999999975320


Q ss_pred             hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224          658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  737 (1120)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  737 (1120)
                      ...                                                                     ..+.++  
T Consensus       250 p~~---------------------------------------------------------------------R~v~if--  258 (338)
T KOG0265|consen  250 PSQ---------------------------------------------------------------------RCVKIF--  258 (338)
T ss_pred             CCC---------------------------------------------------------------------ceEEEe--
Confidence            000                                                                     000000  


Q ss_pred             ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224          738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  817 (1120)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  817 (1120)
                                                           .+..                                       
T Consensus       259 -------------------------------------~g~~---------------------------------------  262 (338)
T KOG0265|consen  259 -------------------------------------QGHI---------------------------------------  262 (338)
T ss_pred             -------------------------------------ecch---------------------------------------
Confidence                                                 0000                                       


Q ss_pred             CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                         .........++|+|+++.+..|+ |..+++||..+...+..+++|.+.|++++|+| ...+|.+++.|.+|++=.
T Consensus       263 ---hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  263 ---HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ---hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence               00122334578999999999998 99999999999899999999999999999999 889999999999998743

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.7e-33  Score=285.49  Aligned_cols=279  Identities=15%  Similarity=0.267  Sum_probs=242.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....|++++|+.+|..|+++..+|.+++|+..                       |.++.. +  ..|.++|.++.|+.+
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-----------------------G~l~~t-l--~~HkgPI~slKWnk~  287 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-----------------------GNLIST-L--GQHKGPIFSLKWNKK  287 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecC-----------------------chhhhh-h--hccCCceEEEEEcCC
Confidence            45789999999999999999999999999862                       222111 2  239999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  914 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  914 (1120)
                      |.||++++ |+++.+||..+++..+.+.-|..+-..|.|-.  ..-+|+.+.||.|+|+.+....++.++.+|.++|.+|
T Consensus       288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al  365 (524)
T KOG0273|consen  288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL  365 (524)
T ss_pred             CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence            99999999 99999999999999999988888877888874  5678899999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---------cEEEE-EeCCeEEEE
Q 001224          915 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF  984 (1120)
Q Consensus       915 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---------~~la~-~~d~~v~i~  984 (1120)
                      .|.|.|.+|+|++.|++++||+....     .+...+.+|..   .|..+.|+|+|         ..+++ +.|+.|++|
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw  437 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW  437 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence            99999999999999999999998763     34555566654   78899999864         45555 699999999


Q ss_pred             EcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224          985 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus       985 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
                      |+..+.++..+.  .|..+|++++|||+|+|||+|+.||.|.||+..++++.+...       +  +..|+  .++|+. 
T Consensus       438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~-  503 (524)
T KOG0273|consen  438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA-  503 (524)
T ss_pred             EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence            999999999987  899999999999999999999999999999999999998877       2  23366  899998 


Q ss_pred             CCCEEEEEeCCCcEEEEecC
Q 001224         1065 EPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1065 d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      +|++|...-.||.+.+-|+.
T Consensus       504 ~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  504 AGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCEEEEEecCCCceEEEec
Confidence            57999999999999998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-30  Score=277.28  Aligned_cols=510  Identities=13%  Similarity=0.168  Sum_probs=352.6

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      ..+|.++|||.+.+.||.+-.||.|.||++..+=...  ..+.|+ ...|.+++|++.++   |.+.+.+|.|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            4589999999999999999999999999999864333  245555 45899999997766   89999999999999999


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      ++.+..+....+.|++++.++..  ..++.|+.||.+..++............                   .-..+.+-
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l-------------------~rq~sRvL  158 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSL-------------------MRQKSRVL  158 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeec-------------------ccccceEE
Confidence            99999999999999999987765  5899999999776666654332221111                   01123455


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-----CC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-----DG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                      +++|+|++..+++|+.||.|++||..++..+.....     .. ...-|.++.|-.+ ..+++|...|+|.+||...+ .
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T  236 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T  236 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence            666666667899999999999999999987773221     11 2223455666544 46788888888888887766 3


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      +.+.+.                                                                          
T Consensus       237 LiqS~~--------------------------------------------------------------------------  242 (691)
T KOG2048|consen  237 LIQSHS--------------------------------------------------------------------------  242 (691)
T ss_pred             hhhhhh--------------------------------------------------------------------------
Confidence            333221                                                                          


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                                      .|...|.+++.++++.++++++.|+.+..|...+...             -|-....       
T Consensus       243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~~-------  286 (691)
T KOG2048|consen  243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINSR-------  286 (691)
T ss_pred             ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeecc-------
Confidence                            2678899999999999999999999988887643211             0211111       


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCe-EEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAA-TFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i-~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                       ...|...+.+++..++  .+++|+ |.++.+-.....+..........+- .-+...|  .++|..--.+..+.+|.+.
T Consensus       287 -r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG  361 (691)
T KOG2048|consen  287 -RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG  361 (691)
T ss_pred             -ccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence             1238889999999887  777777 8887776655422211111000001 1122333  3344444456678888776


Q ss_pred             cce---------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001224          897 VDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  967 (1120)
Q Consensus       897 ~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs  967 (1120)
                      +.-         +++-...-...|.+.+.||||++++.+.- ..++||.+..........+.....   .......+.|+
T Consensus       362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~---~~~~a~~i~ft  437 (691)
T KOG2048|consen  362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPL---ALLDASAISFT  437 (691)
T ss_pred             CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchh---hhccceeeEEE
Confidence            541         12222223456999999999999997764 348888887644322222221111   11356788999


Q ss_pred             cCCcEEEE-E-eCCeEEEEEcCCce--eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc
Q 001224          968 QDQIHFLV-V-HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1043 (1120)
Q Consensus       968 pdg~~la~-~-~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~ 1043 (1120)
                      -|+..++. + ....+.++++.+..  .+..+...+-...|+.+..|+||+|||+.+.+|.|.+|++.+++......   
T Consensus       438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---  514 (691)
T KOG2048|consen  438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---  514 (691)
T ss_pred             ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---
Confidence            88877766 4 66788888876653  33333333446789999999999999999999999999999988775442   


Q ss_pred             ccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCC
Q 001224         1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGV 1092 (1120)
Q Consensus      1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~ 1092 (1120)
                             .-+....+++|+|.+-+.|+.+..|+.++-+|++... ..|..
T Consensus       515 -------rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~  557 (691)
T KOG2048|consen  515 -------RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSK  557 (691)
T ss_pred             -------ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhh
Confidence                   0113344889998778889999999999999995544 44443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.7e-33  Score=276.04  Aligned_cols=251  Identities=19%  Similarity=0.307  Sum_probs=219.7

Q ss_pred             Ccceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          354 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       354 ~~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      |-++.+.+ +|.+.|.|+++.|-.++ +++|+.|++|.|||+.+|+...                   .+.||-..|..+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v  199 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV  199 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence            44444444 49999999999999885 9999999999999999999887                   489999999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      ++|+-..||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.++||||+++...+..+.
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~  274 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS  274 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence            999999999999999999999999998777   6889999999999999988  79999999999999999999999999


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ||..+|.++.+.+..  ..+++|+.|++|++||+..++...++..|...+.+++..|.                     .
T Consensus       275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~---------------------e  331 (460)
T KOG0285|consen  275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK---------------------E  331 (460)
T ss_pred             CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc---------------------h
Confidence            999999999875543  57999999999999999998888877777766665555554                     4


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ..+++++.| .|+-|++..|..+..+.++..  .+++++...|| ++++|+++|.+.+||.+++
T Consensus       332 ~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  332 NLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             hhhhccCCc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            567777766 699999999999988776644  68889988776 6788999999999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.5e-31  Score=288.73  Aligned_cols=449  Identities=15%  Similarity=0.255  Sum_probs=313.7

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      +..-+.+|..++|+|...+++++-..|.|++||++-+.++.   .+.+|.++|..++|.|++.  ++++||+|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            44456789999999999999999999999999999888776   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  581 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~  581 (1120)
                      ..+.+|+.++.||.+.|..+.||+..  .+|+++|.|.+|++|++.+.+++..+.+|.+.|.+..|.|..          
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE----------  147 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE----------  147 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc----------
Confidence            99999999999999999999998765  699999999999999999999999999999988877776644          


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------eeEEEecCCCCCCcCeEEEcC
Q 001224          582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---------------------------LLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                                 ..++++|-|.+||+||+..-+                           .+...-.++|...|+.++|+|
T Consensus       148 -----------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  148 -----------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             -----------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence                       479999999999999985321                           111122234455677788888


Q ss_pred             CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224          635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  714 (1120)
Q Consensus       635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1120)
                      .-.++++|++|..|++|.++..                                                          
T Consensus       217 TlpliVSG~DDRqVKlWrmnet----------------------------------------------------------  238 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNET----------------------------------------------------------  238 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence            7778888888888888865322                                                          


Q ss_pred             cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224          715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  794 (1120)
Q Consensus       715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  794 (1120)
                                        +.|.+++.             .+|.+.|.++.|+|....+++.++|+.|+|||+...     
T Consensus       239 ------------------KaWEvDtc-------------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-----  282 (1202)
T KOG0292|consen  239 ------------------KAWEVDTC-------------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-----  282 (1202)
T ss_pred             ------------------cceeehhh-------------hcccCCcceEEecCccceeEecCCCccEEEEecccc-----
Confidence                              23433321             469999999999999999999999999999998432     


Q ss_pred             CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEe
Q 001224          795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH  874 (1120)
Q Consensus       795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s  874 (1120)
                                     ++  +.. +..  ..+..+.++.+|..++++.|.|+.+.||-++.-.          ++.+  .+
T Consensus       283 ---------------t~--v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~~--v~  330 (1202)
T KOG0292|consen  283 ---------------TS--VQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAYA--VN  330 (1202)
T ss_pred             ---------------cc--eee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceEE--Ec
Confidence                           11  111 111  4567889999999999999999888888876322          2222  22


Q ss_pred             cCCCcEEEEEeCCCcEEEEEeeccee--eEeeccc---ccceEEEEEccCCCEE-EEEeCC-CCEEEEECCCccccccee
Q 001224          875 PQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF  947 (1120)
Q Consensus       875 p~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~v~iWd~~~~~~~~~~~  947 (1120)
                        ++.++.+  .|..|+-+|+.+.+-  +..++..   -.++.++.++|....+ ++...| |.--++.+..........
T Consensus       331 --~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~  406 (1202)
T KOG0292|consen  331 --GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG  406 (1202)
T ss_pred             --CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence              3334443  389999999988543  3344433   3678899999875544 443333 333444443311100000


Q ss_pred             eeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224          948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus       948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
                      .....+     .. ....|-..+++.+.. ++..+.+-++.+... +.+..   ...+..|-+.-+|.+|+..  ...|.
T Consensus       407 ~~~~k~-----tG-~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~~--~~~v~  474 (1202)
T KOG0292|consen  407 KDVKKG-----TG-EGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLRS--PDSVT  474 (1202)
T ss_pred             hhhhcC-----CC-CceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEEc--CCeEE
Confidence            000000     01 112222222222222 344444444433221 11111   1234455555566666633  56799


Q ss_pred             EEEcCCcceeeeeC
Q 001224         1027 VFSAANLKLRCRIN 1040 (1120)
Q Consensus      1027 iwd~~~~~~~~~~~ 1040 (1120)
                      +||+...+.+..++
T Consensus       475 lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  475 LFDVQQKKKVGSIK  488 (1202)
T ss_pred             EEEeecceEEEEEe
Confidence            99999998888776

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-29  Score=270.29  Aligned_cols=547  Identities=14%  Similarity=0.137  Sum_probs=378.0

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-CCCceEEEEEcCCCCeEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~la  442 (1120)
                      ..+|+|+|||.+.+. ||.|-.||.|.||++..+=...                  .++.+ ....|.+++|+ +|..|.
T Consensus        25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF   84 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF   84 (691)
T ss_pred             ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence            478999999999995 9999999999999998743222                  12444 45689999999 666788


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE--EeeccccCeEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS  520 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~h~~~v~~  520 (1120)
                      +.+.+|.|.-||+.+++...   .+....+.|++++.+|.+.  .++.|++||.+..++...++...  .+....+.|.+
T Consensus        85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            89999999999999987555   6777788999999999998  69999999988888888777654  34456689999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-------C-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------A-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      +.|++  ++..+++|+.||.|++||...+.......       . ...-|+++.+-.++                     
T Consensus       160 lsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---------------------  216 (691)
T KOG2048|consen  160 LSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---------------------  216 (691)
T ss_pred             EEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---------------------
Confidence            99864  45679999999999999998876554111       1 11234444444444                     


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  672 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  672 (1120)
                       .+++|..-|+|.+||...+.+++.+..+..  .|.+++..+++.++++++-|+.|.-+...++...             
T Consensus       217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------  280 (691)
T KOG2048|consen  217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------  280 (691)
T ss_pred             -cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------
Confidence             499999999999999999999999887654  6999999999999999999999988876554210             


Q ss_pred             cCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC
Q 001224          673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  752 (1120)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  752 (1120)
                                                                                    |-..            ..
T Consensus       281 --------------------------------------------------------------wv~~------------~~  286 (691)
T KOG2048|consen  281 --------------------------------------------------------------WVIN------------SR  286 (691)
T ss_pred             --------------------------------------------------------------eeee------------cc
Confidence                                                                          1000            00


Q ss_pred             CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc-EEE
Q 001224          753 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFA  831 (1120)
Q Consensus       753 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~l~  831 (1120)
                      ...|...+++++..++  .+++++.|..+.+-.......              .+.   ...        ...+-. -+.
T Consensus       287 r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h---~~~--------~~~p~~~~v~  339 (691)
T KOG2048|consen  287 RDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDH---RQK--------NLFPASDRVS  339 (691)
T ss_pred             ccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhh---hcc--------ccccccceee
Confidence            1237788888888877  689999998887754321100              000   000        001111 133


Q ss_pred             EccCCCEEEEEeCCcEEEEEcCCCce---------eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-
Q 001224          832 LSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-  901 (1120)
Q Consensus       832 ~s~d~~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-  901 (1120)
                      ..+..+.++.-.+..+.+|.+.+...         .+........|.|.+.|| +|++||.+.- ..++||.+.....+ 
T Consensus       340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk  417 (691)
T KOG2048|consen  340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVK  417 (691)
T ss_pred             cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCccee
Confidence            44555555555578888998875421         122223455799999999 9999998763 46888887752222 


Q ss_pred             ----EeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-
Q 001224          902 ----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  975 (1120)
Q Consensus       902 ----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-  975 (1120)
                          .......-.+..+.|+-|+..++.++ .+..+.+.++++........++..    .....|..++.||+|+|+|+ 
T Consensus       418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~  493 (691)
T KOG2048|consen  418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAI  493 (691)
T ss_pred             EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEE
Confidence                12222334577889999998888777 677888888887543322222111    12358999999999999999 


Q ss_pred             EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCcceeeeeCC-CcccCCCCCCCC
Q 001224          976 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINP-SAYLPAGVSSSN 1053 (1120)
Q Consensus       976 ~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~-~~~~~~g~~~~~ 1053 (1120)
                      +..+.|.+|++++++......  .-...|+.++|+| +-..|+.+..|+.|+=||++..++..-... ...+|.....-.
T Consensus       494 ~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~  571 (691)
T KOG2048|consen  494 STRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLI  571 (691)
T ss_pred             eccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcC
Confidence            689999999999987655442  2257899999995 556788899999999999954432211110 011221111111


Q ss_pred             ccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      -....+.|+|.+... +..-+.+.+.+.|..
T Consensus       572 ~~~~gisfd~~n~s~-~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  572 PGIPGISFDPKNSSR-FIVYDAHWSCLIDFS  601 (691)
T ss_pred             CCCceEEeCCCCccE-EEEEcCcEEEEEecC
Confidence            112378888754433 334445666666643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9.1e-33  Score=267.04  Aligned_cols=253  Identities=18%  Similarity=0.227  Sum_probs=215.8

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ...+.+|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-.                  .++++|.++|..+.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~  100 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMR  100 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeecc
Confidence            345667999999999999999 59999999999999976433211                  14789999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  516 (1120)
                      |++.|++++.|.+|+.||+++|++++   .+++|.+.|+++.-+.-|.. ++.+++.|+++++||+++..+++++. ...
T Consensus       101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence            99999999999999999999999777   68899999999996666776 78999999999999999999998886 456


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .+++++|..  .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.                     +++
T Consensus       176 qltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs---------------------~ll  232 (338)
T KOG0265|consen  176 QLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS---------------------FLL  232 (338)
T ss_pred             eEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------ccc
Confidence            788888854  446899999999999999999888888888888888888777775                     789


Q ss_pred             EEeCCCeEEEEECCC----CceeEEEecCCCCC--CcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDS----VQLLTSIDADGGLP--ASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +-+.|.++++||++.    .+++..+.++.+.-  ....++|+|++..+.+|+.|..+++||....
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence            999999999999874    34577777665532  3457899999999999999999999997543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-33  Score=309.18  Aligned_cols=274  Identities=15%  Similarity=0.215  Sum_probs=234.4

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....+.|..|++|+++++.+..|..|++|.+...+..                      .  ++   +..         +
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~----------------------~--lk---~~~---------~  420 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK----------------------K--LK---DAS---------D  420 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhc----------------------c--cc---chh---------h
Confidence            4567899999999999999999999999987421100                      0  00   000         1


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  914 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  914 (1120)
                      ...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus       421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence            11111222 33366667677777788999999999999999 99999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeee
Q 001224          915 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK  993 (1120)
Q Consensus       915 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~  993 (1120)
                      .|+|-|-++||+|.|++-++|..+.     ..++..+.||..   .|.|+.|+|+..|+++| .|.+|++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            9999999999999999999999887     456778888875   89999999999999995 89999999999999999


Q ss_pred             ccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224          994 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus       994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      .|.  ||.++|++++|||+|++|++|+.||.|.|||+.+++++..+.       +| ...+.  ++.|+. ||..||+|+
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~H-t~ti~--SlsFS~-dg~vLasgg  638 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GH-TGTIY--SLSFSR-DGNVLASGG  638 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cc-cCcee--EEEEec-CCCEEEecC
Confidence            997  899999999999999999999999999999999999998887       65 34477  899999 799999999


Q ss_pred             CCCcEEEEecCCCC
Q 001224         1074 SDGGVHVFEPLESE 1087 (1120)
Q Consensus      1074 ~Dg~v~vW~~~~~~ 1087 (1120)
                      .|++|++||+....
T Consensus       639 ~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  639 ADNSVRLWDLTKVI  652 (707)
T ss_pred             CCCeEEEEEchhhc
Confidence            99999999987655

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.1e-32  Score=257.08  Aligned_cols=247  Identities=19%  Similarity=0.338  Sum_probs=198.8

Q ss_pred             eeeccCCCCceEEEEecC-CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          358 TRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ..+-+|++.|+.++|+|- |. +||+++.|+.|+||+...+.....               ...+-.+|+..|..++|+|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp   71 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSP   71 (312)
T ss_pred             EeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecC
Confidence            345569999999999999 77 799999999999999985332221               1113468999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---ceeEEeec
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEG  513 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~  513 (1120)
                      .|++||+||.|.++.||.-..++ +....+|.||...|.|++|+++|.  +||+|+.|++|-||.+..+   +++..++.
T Consensus        72 ~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             CCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999999999887655 556778999999999999999999  8999999999999998754   56788999


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                      |...|..+.|||+.  .+|++++.|.+|++|+-...   .+..++.+|...|.++                     +|++
T Consensus       149 HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~---------------------~F~~  205 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL---------------------AFDN  205 (312)
T ss_pred             ccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE---------------------EecC
Confidence            99999999999987  49999999999999976631   2344555555545444                     4555


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      .|..|++++.|++++||...+.     +. ..+...+..++|.  ...|++++.|+.|+++...
T Consensus       206 ~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  206 IGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             CCceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            5557999999999999986532     11 1223467788888  5689999999999999654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-33  Score=283.39  Aligned_cols=284  Identities=20%  Similarity=0.313  Sum_probs=244.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      -+..|..|.|.|+|+. |++|+..|.+.+|+..+      ++|             ..++..|..+|.++.||++|.+++
T Consensus        95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnF-------------EtilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNF-------------ETILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             cccceeeEEEcCCCce-eEeecccccEEEecCce------eeH-------------HHHhhhhcccceeEEEccCCCEEE
Confidence            4578999999999997 99999999999999733      122             126889999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                      +|+.+|.|++|+..-....    .+.+| ...|++++|+|++.  .++++++||+|+|||....+.-..+.||.-.|.++
T Consensus       155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence            9999999999988754322    34454 48999999999888  69999999999999999999999999999999999


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      .|||..  ..|++|+.|..|++||.+++.++.++..|...|..+.|++++                     ++|+++|.|
T Consensus       229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD  285 (464)
T KOG0284|consen  229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKD  285 (464)
T ss_pred             ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCC
Confidence            999876  589999999999999999999999999998888887777766                     489999999


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      ..++++|+++.+.+.++.+|..  .++++.|+| ...+|.+|+.||.|..|.+... +.+.                   
T Consensus       286 ~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~-------------------  343 (464)
T KOG0284|consen  286 QSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG-------------------  343 (464)
T ss_pred             ceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-cccc-------------------
Confidence            9999999998888888887754  799999999 7788999999999999987522 1100                   


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  760 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  760 (1120)
                                                                                            ....+|...|
T Consensus       344 ----------------------------------------------------------------------~i~~AHd~~i  353 (464)
T KOG0284|consen  344 ----------------------------------------------------------------------EIPPAHDGEI  353 (464)
T ss_pred             ----------------------------------------------------------------------CCCcccccce
Confidence                                                                                  0113488999


Q ss_pred             EEEEEcCCCceEEEeccCceEEEeeec
Q 001224          761 SRLIFTNSGNAILALASNAIHLLWKWQ  787 (1120)
Q Consensus       761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~  787 (1120)
                      .+++++|-|..|++++.|.++++|.-.
T Consensus       354 wsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  354 WSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeeeccccceeEeecCCCcceeeeccC
Confidence            999999999999999999999999753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=268.85  Aligned_cols=294  Identities=16%  Similarity=0.317  Sum_probs=246.3

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      ++.+|.+.|.|+++.|-..++++|+.|++++|||+.+|+...   ++.||...|..+++|+-..  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            689999999999999999999999999999999999998554   7999999999999999988  89999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |++..+.++.+.||-..|.++..+|.-  +.|++|+.|.++++||+++...+..+.+|...|.++.+.|-..        
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--------  290 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--------  290 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence            999999999999999999999998776  5899999999999999999999999999998888877765443        


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                   .+++|+.|++|++||+..|+...++..|..  .+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus       291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~  353 (460)
T KOG0285|consen  291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL  353 (460)
T ss_pred             -------------ceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence                         599999999999999999999999886654  79999999999999998876 6788887766 222


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+                                                                             
T Consensus       354 ~nl-----------------------------------------------------------------------------  356 (460)
T KOG0285|consen  354 QNL-----------------------------------------------------------------------------  356 (460)
T ss_pred             hcc-----------------------------------------------------------------------------
Confidence            212                                                                             


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                   .+|...|.+++.+.||- +++++.+|.+.+||+..+..-..++...         .-|.        
T Consensus       357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS--------  405 (460)
T KOG0285|consen  357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS--------  405 (460)
T ss_pred             -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence                         23667788888888875 7888889999999986542211111000         0011        


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  854 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~  854 (1120)
                      ...+..|.+.+|...|..|++|. |.+|++|.-..
T Consensus       406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            12467799999999999999998 99999998653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.3e-31  Score=251.14  Aligned_cols=293  Identities=15%  Similarity=0.206  Sum_probs=236.9

Q ss_pred             ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224          754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  832 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~  832 (1120)
                      .+|.+++..++|+|- |..|++++.|..|++|+....                     ...........+|...|++++|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~---------------------~s~~ck~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG---------------------DSWTCKTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC---------------------CcEEEEEeccccchheeeeeee
Confidence            458889999999999 899999999999999987320                     0011111122359999999999


Q ss_pred             ccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecc
Q 001224          833 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG  906 (1120)
Q Consensus       833 s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~  906 (1120)
                      +|.|++|++++ |.++.||.-.  .++++.++.+|..+|.|++|++ +|++||+++.|++|-||.+..   .++...|++
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999 9999999865  4678999999999999999999 999999999999999999985   367889999


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFE  985 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d  985 (1120)
                      |...|..+.|+|...+|+|++.|.+|++|+-..  .....+.+.+.+|..   .|.+++|++.|..|+++ .|+.++||.
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999999999999999999998774  223667888888875   89999999999988885 889999998


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      ..+.     + ...|+.+++.+.|.  ...|++++.|+.|++|.-...-.-..+........-| ...|+  +++|.|..
T Consensus       224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~  292 (312)
T KOG0645|consen  224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKV  292 (312)
T ss_pred             eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCC
Confidence            6522     2 23678999999997  5679999999999999876431111111111111222 23477  99999965


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001224         1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      +++|++|+.||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=8.7e-30  Score=262.42  Aligned_cols=433  Identities=18%  Similarity=0.251  Sum_probs=318.0

Q ss_pred             ceeeecc-CCCCceEEEEecC--CCeEEEEE-eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          356 TVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       356 ~~~~~~~-h~~~v~~v~~spd--g~~lla~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      ...+.++ -...|+|++||+-  |.+|++.- +.+..+.|||++.+.....                   ....+..|..
T Consensus       145 ~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~  205 (626)
T KOG2106|consen  145 STLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFL  205 (626)
T ss_pred             eeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEE
Confidence            3445555 5678999999983  44433332 3355688999988766542                   3335568999


Q ss_pred             EEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccc-cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       432 l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      ..|.|.+.-|......+.+..|+.+++...+....+.++. .-|.|++|.++|.   ++||..+|.|.||+..+.+..+.
T Consensus       206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~  282 (626)
T KOG2106|consen  206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQ  282 (626)
T ss_pred             EEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeE
Confidence            9999966666655567889999999998877666666554 5799999999999   89999999999999888777777


Q ss_pred             eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee--eeCCCCceeEEEEc-------------------C
Q 001224          511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYS-------------------A  569 (1120)
Q Consensus       511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s-------------------~  569 (1120)
                      ...|.+.|.++|...  +| .|++|+.|+.|..|| ..-+.+..  ++...+.+..++-.                   .
T Consensus       283 ~~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~  358 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN  358 (626)
T ss_pred             eeecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence            779999999999754  43 577799999999998 33222222  22222233332211                   1


Q ss_pred             CCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001224          570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  649 (1120)
Q Consensus       570 ~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  649 (1120)
                      .-.....||.+ ..+.++.+|+.+++++++.|+.+++|+  ..+++.+....   .++.|+.|+|.| .+++|+..|...
T Consensus       359 ~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~  431 (626)
T KOG2106|consen  359 GFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWF  431 (626)
T ss_pred             CceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEE
Confidence            11133444544 788899999999999999999999999  45555554433   257899999999 999999999999


Q ss_pred             EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224          650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  729 (1120)
Q Consensus       650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  729 (1120)
                      +.|.++. ..+..                                                                   
T Consensus       432 V~d~e~~-~lv~~-------------------------------------------------------------------  443 (626)
T KOG2106|consen  432 VLDTETQ-DLVTI-------------------------------------------------------------------  443 (626)
T ss_pred             EEecccc-eeEEE-------------------------------------------------------------------
Confidence            9987663 11110                                                                   


Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  809 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~  809 (1120)
                                              .....++..+.|+|+|.+++.++.|+.|++|.+...                    
T Consensus       444 ------------------------~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~--------------------  479 (626)
T KOG2106|consen  444 ------------------------HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN--------------------  479 (626)
T ss_pred             ------------------------EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC--------------------
Confidence                                    002467899999999999999999999999987432                    


Q ss_pred             CCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee--------------e----cCCCCCeEE
Q 001224          810 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPAATF  870 (1120)
Q Consensus       810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~  870 (1120)
                       |+.....-..  +..+|+.+.||+|++++.+-+ |-.|-.|.....+....              |    ..+...|..
T Consensus       480 -g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a  556 (626)
T KOG2106|consen  480 -GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINA  556 (626)
T ss_pred             -CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHH
Confidence             2221111111  448899999999999999998 88899995432221111              1    124455777


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          871 LAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ++-+. +.+++|+|.+.|.|++|...--   .......+|++.|++++|.-+...|++.+.|..|..|++
T Consensus       557 ~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  557 VARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            77777 8899999999999999987643   334667899999999999988888888889999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=280.92  Aligned_cols=291  Identities=19%  Similarity=0.304  Sum_probs=248.4

Q ss_pred             ccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          420 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       420 ~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      +.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.||..+|.+++|+++|.  -++|+|.|+.|
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~l  282 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFL  282 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceee
Confidence            36889999999999999 999999999999999999987 66665   7999999999999999999  59999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      ++||+++|+++..+. ....+.++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+     
T Consensus       283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-----  355 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-----  355 (503)
T ss_pred             eeeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-----
Confidence            999999999999986 45667889998876 37899999999999999999998888888888888888888776     


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                                      ++++.++|++++||+.+.+..+..... .......++..+|+++++++-+.|+.|.++.+....
T Consensus       356 ----------------rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  356 ----------------RFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             ----------------eEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence                            799999999999999998876654432 223357889999999999999999999999864431


Q ss_pred             hh--hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          658 RL--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       658 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      +.  .+.+++|.                                                                    
T Consensus       419 r~nkkK~feGh~--------------------------------------------------------------------  430 (503)
T KOG0282|consen  419 RLNKKKRFEGHS--------------------------------------------------------------------  430 (503)
T ss_pred             ccCHhhhhccee--------------------------------------------------------------------
Confidence            11  11111100                                                                    


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                                                                                                      
T Consensus       431 --------------------------------------------------------------------------------  430 (503)
T KOG0282|consen  431 --------------------------------------------------------------------------------  430 (503)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                             -.+....+.|||||++|++|+ ||.+.+||.++-+.+..+++|.+.+..+.|+|.....+|+++.||.|++|+
T Consensus       431 -------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  431 -------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                   122334688999999999998 999999999999999999999999999999998888999999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.9e-32  Score=272.96  Aligned_cols=285  Identities=16%  Similarity=0.256  Sum_probs=240.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....|..+.|.|+|+.|++++..|...+|+.....+                       ...+  ..|+..|+++.|+++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------------Etil--QaHDs~Vr~m~ws~~  149 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------------ETIL--QAHDSPVRTMKWSHN  149 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------------HHHh--hhhcccceeEEEccC
Confidence            346788999999999999999999999997522111                       1112  239999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      |.++++|+ +|.|++|+..-. .+..+.+| ...|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus       150 g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  150 GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence            99999999 899999998653 44455555 48899999999 6778889999999999999988888889999999999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  992 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~  992 (1120)
                      ++|+|...+||++|.|..|++||.+++.     ++....+|..   .|..+.|+|++.+|++ +.|..+++||+++.+.+
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            9999999999999999999999999965     5677777775   8999999999999999 69999999999988777


Q ss_pred             eccccCCCCCCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          993 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       993 ~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      ..+.  +|...|++++|+|- ..+|.+|+.||.|..|.+...+.+..      ++..|... |+  +++|+|- |.+|++
T Consensus       300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~-iw--sl~~hPl-Ghil~t  367 (464)
T KOG0284|consen  300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE------IPPAHDGE-IW--SLAYHPL-GHILAT  367 (464)
T ss_pred             HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccC------CCcccccc-ee--eeecccc-ceeEee
Confidence            7665  89999999999994 56788999999999999986665544      33444344 77  9999995 899999


Q ss_pred             EeCCCcEEEEecCCCC
Q 001224         1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
                      |+.|.++++|.-....
T Consensus       368 gsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cCCCcceeeeccCCCC
Confidence            9999999999865433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.3e-31  Score=300.63  Aligned_cols=289  Identities=27%  Similarity=0.423  Sum_probs=246.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      +...|.++.|+++|+.+++++.++.+++|+.....                +     .....+  .+|...|..++|+|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence            46788999999999999999999999999862211                0     011112  249999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEc-CCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          836 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      ++++++++ |++|++||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999999 899999999 56689999999999999999999 7799999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceee
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  992 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~  992 (1120)
                      ++|++|+.+|++++.|+.|+|||+.++...   +.....++.... .++.++|+|++++++++ .|+.+++||+..+.+.
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997653   455666665533 68999999999999995 7779999999999999


Q ss_pred             eccccCCCCC---CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224          993 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus       993 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
                      ..+.  +|..   .+.+..++++++++++|+.|+.|++||+.++..++.+.       +|....+.  .+.++| ..+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence            8887  4544   45566778899999999999999999999999998887       43222234  788999 47899


Q ss_pred             EEEe--CCCcEEEEecC
Q 001224         1070 ALGL--SDGGVHVFEPL 1084 (1120)
Q Consensus      1070 ~s~~--~Dg~v~vW~~~ 1084 (1120)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            9988  79999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-31  Score=246.72  Aligned_cols=251  Identities=18%  Similarity=0.229  Sum_probs=218.7

Q ss_pred             Ccceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          354 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       354 ~~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      |.+-.+++ .|+++|.++.|+-||+| .++++.|.+|++|++..|..+++                   +.+|...|..+
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~   65 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA   65 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence            33333444 49999999999999997 78888899999999999998874                   88999999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--CceeEE
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYI  510 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--~~~~~~  510 (1120)
                      +.+.|...+++|+.|..|.+||+++|+.++   .+++|.+.|+.++|+.+..  ++++|+.|.++++||.++  .++++.
T Consensus        66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence            999999999999999999999999999887   7999999999999999998  899999999999999985  577888


Q ss_pred             eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                      +......|.++....    ..|++|+.||++|.||++.+.....+-                       ..+++++++++
T Consensus       141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~  193 (307)
T KOG0316|consen  141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSK  193 (307)
T ss_pred             hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecC
Confidence            888888999987632    579999999999999998765433222                       23666666777


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++..++++.|+++++.|-.+|+.+..+++|.....=..++++.....+++|++||.|.+||+.++
T Consensus       194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            777999999999999999999999999999887766677888888999999999999999999776

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-30  Score=297.72  Aligned_cols=257  Identities=21%  Similarity=0.371  Sum_probs=214.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc--eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      +...|+|+.|||+|++ +++++.|+.+++|+..+++  .+.                   .+.+|...|.+++|+|||++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            4799999999999996 9999999999999997766  222                   35789999999999999999


Q ss_pred             EEEEECCCeEEEEEc-cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          441 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       441 las~~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      +++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+++++++..+.+|.+.|.
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            999999999999999 4445454   7889999999999999996  799999999999999999999999999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      +++|.  +++.+|++++.|+.|++||+.++..  ...+..+...                  . .+..+.|+|++.++++
T Consensus       293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence            99984  5668999999999999999998763  2333322221                  0 3455555666669999


Q ss_pred             EeCCCeEEEEECCCCceeEEEecCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224          598 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  666 (1120)
Q Consensus       598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  666 (1120)
                      ++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|.+|+..++ ..+..+.+|
T Consensus       352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h  420 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGH  420 (456)
T ss_pred             ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCC
Confidence            999999999999999999998877653 23445556789999999999999999999886 455544443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=5e-31  Score=264.85  Aligned_cols=288  Identities=20%  Similarity=0.358  Sum_probs=233.2

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc---eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      .+..|.+.|+.+.||++|+  |||+++.|.+..+|++....   ..+++.+|..+|..+.|+|+.  ++|++++.|..+.
T Consensus       219 il~~htdEVWfl~FS~nGk--yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd--ryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGK--YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD--RYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCe--eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC--CeEEecCchHhee
Confidence            5778999999999999999  89999999999999987543   468899999999999996654  7999999999999


Q ss_pred             EEecCCCCCceeeeCC-CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 001224          543 AWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  621 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  621 (1120)
                      +||+.++.....+... +..+.+.+|.||                     |..+++|+.|+.+..||++ |.....+++.
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pD---------------------g~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv  352 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPD---------------------GFRFVTGSPDRTIIMWDLD-GNILGNWEGV  352 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccC---------------------CceeEecCCCCcEEEecCC-cchhhccccc
Confidence            9999998877655433 344445555554                     4579999999999999985 4445555543


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                      . ...|.+++.++||+++++.+.|..|++++..+.... .                                        
T Consensus       353 r-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-~----------------------------------------  390 (519)
T KOG0293|consen  353 R-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-G----------------------------------------  390 (519)
T ss_pred             c-cceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-c----------------------------------------
Confidence            3 245889999999999999999999998876432000 0                                        


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                                                            +         
T Consensus       391 ----------------------------------------------------------------------l---------  391 (519)
T KOG0293|consen  391 ----------------------------------------------------------------------L---------  391 (519)
T ss_pred             ----------------------------------------------------------------------c---------
Confidence                                                                                  0         


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT  860 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~  860 (1120)
                                                             .....+|+++++|.|++++++.- +..+++||++....++.
T Consensus       392 ---------------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k  432 (519)
T KOG0293|consen  392 ---------------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK  432 (519)
T ss_pred             ---------------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence                                                   00345677888888888877766 78899999999899999


Q ss_pred             ecCCCCC--eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEEC
Q 001224          861 FMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       861 ~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~  937 (1120)
                      +.+|...  |..-+|-..+..++|+|++|+.|+||+..+|+++.++.||...|++|+|+|.. ..+||||.||+||||..
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            9998764  55556765466899999999999999999999999999999999999999865 67899999999999987


Q ss_pred             CC
Q 001224          938 DG  939 (1120)
Q Consensus       938 ~~  939 (1120)
                      ..
T Consensus       513 ~~  514 (519)
T KOG0293|consen  513 SD  514 (519)
T ss_pred             Cc
Confidence            65

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.5e-30  Score=237.03  Aligned_cols=288  Identities=17%  Similarity=0.267  Sum_probs=233.0

Q ss_pred             ccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          418 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       418 ~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      ...++.+|.++|.++.|+-||+|.++++.|.+|++|+...|.+++   ++.+|...|..++.+.|+.  -+++|+.|+.|
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v   83 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV   83 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence            344688999999999999999999999999999999999998777   7899999999999999998  49999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      .+||+.+|+.++.+.+|.+.|+.+.|+.  +...+++|+.|.++++||.++.  ++++.+......|.++.++       
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-------  154 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-------  154 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-------
Confidence            9999999999999999999999999854  4479999999999999999864  3445555444555554443       


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                                      +..+++|+.||+++.||++.|+....+-++    +|+|++|++|++..++++.|+++++.|-.+
T Consensus       155 ----------------~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  155 ----------------EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             ----------------ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccch
Confidence                            246999999999999999999877666533    799999999999999999999999999999


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      | ++++...+|...-.                                                                
T Consensus       215 G-klL~sYkGhkn~ey----------------------------------------------------------------  229 (307)
T KOG0316|consen  215 G-KLLKSYKGHKNMEY----------------------------------------------------------------  229 (307)
T ss_pred             h-HHHHHhccccccee----------------------------------------------------------------
Confidence            9 78888877654311                                                                


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                                              -...+++.....++++++||.+++||+....                      .+.
T Consensus       230 ------------------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~----------------------~~s  263 (307)
T KOG0316|consen  230 ------------------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET----------------------QIS  263 (307)
T ss_pred             ------------------------eeeeeecccceeEEeccCCceEEEEEeccce----------------------eee
Confidence                                    1234556666678888888998888873321                      111


Q ss_pred             ccCCCCCCCCC-ccEEEEccCCCEEEEEeCCcEEEEEcC
Q 001224          816 NDVTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNMM  853 (1120)
Q Consensus       816 ~~~~~~~~~~~-v~~l~~s~d~~~l~~~sdg~i~vwd~~  853 (1120)
                      . +..  +... +.++.+.|.-..++++.++.+..|--.
T Consensus       264 k-~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~  299 (307)
T KOG0316|consen  264 K-LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQE  299 (307)
T ss_pred             e-ecc--CCceeEEeeecccCccceeEecCCceeceeeh
Confidence            1 111  3333 788999999888888888888887643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=6.5e-29  Score=261.75  Aligned_cols=248  Identities=18%  Similarity=0.246  Sum_probs=176.9

Q ss_pred             EeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEE
Q 001224          774 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFN  851 (1120)
Q Consensus       774 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd  851 (1120)
                      ..+..|.|-||+++....-+++.                     +.+......|+.+.|.| |...||+++ ||.|++|.
T Consensus       598 L~g~gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr  656 (1012)
T KOG1445|consen  598 LAGSGGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWR  656 (1012)
T ss_pred             ecCCCceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEE
Confidence            35567899999986443333322                     22233667789999998 667888888 89999999


Q ss_pred             cCCCc-------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224          852 MMTFK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  924 (1120)
Q Consensus       852 ~~~~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  924 (1120)
                      +..+.       .-..+..|...|+++.|+|--...||+++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+|
T Consensus       657 ~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  657 LTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA  736 (1012)
T ss_pred             eccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee
Confidence            87542       33557789999999999997788999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeC----CeEEEEEcCCcee--eecccc
Q 001224          925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVP  997 (1120)
Q Consensus       925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d----~~v~i~d~~~~~~--~~~~~~  997 (1120)
                      +.+.||+|+||+-..++.    .+..  +..+....-..+.|.-||+++++ |.|    .+|.+||..+...  +.+...
T Consensus       737 tVcKDg~~rVy~Prs~e~----pv~E--g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l  810 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSREQ----PVYE--GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL  810 (1012)
T ss_pred             eeecCceEEEeCCCCCCC----cccc--CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee
Confidence            999999999999887553    2222  22222234467899999999888 544    5788999876542  111111


Q ss_pred             CCCCCCeeEEEECCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224          998 RESSAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus       998 ~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
                      +. ...+.--.+.+|.. ++++|-.|..|.+|.+......-.-..+...+.+|
T Consensus       811 Dv-aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h  862 (1012)
T KOG1445|consen  811 DV-APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH  862 (1012)
T ss_pred             cc-cCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence            10 11111112344544 57788889999999986655433222234445554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.3e-31  Score=262.81  Aligned_cols=232  Identities=20%  Similarity=0.353  Sum_probs=203.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ..+.|.|+.+..+   .+++|..|++|.|||..+-+.+.                   ++.||++.|.|+.|.  .+.++
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence            4578999998654   49999999999999998877665                   589999999999995  56999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce---eEEeeccccCeE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY  519 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~  519 (1120)
                      +|+.|.+|+|||+++|+.+.   ++-+|...|..+.|+..    ++++++.|.+|.|||+.....   .+.+.||...|.
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999776   78899999999999853    799999999999999987653   356789999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      .+.|..    +++++++.|.+|++|++.+.+.+.++.+|...|.++.+.                       ++++++|+
T Consensus       325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS  377 (499)
T KOG0281|consen  325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS  377 (499)
T ss_pred             eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence            998732    599999999999999999999999999988877766542                       35789999


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .|.+|++||+..|.++..+++|..  -|.|+.|  |.+.+++|..||+|++||+..+
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence            999999999999999999987765  6899999  5678999999999999999876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.2e-30  Score=268.64  Aligned_cols=291  Identities=19%  Similarity=0.366  Sum_probs=244.9

Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      .+.+.++.||+..|+++.|.+. .+.+|++++.|+.|++|++.. ++++.++.+|..+|..++|+.+|.           
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-----------  271 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-----------  271 (503)
T ss_pred             HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence            3556788999999999998763 458999999999999999987 677888899988888888888876           


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhh
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT  662 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~  662 (1120)
                                .+++++-|+.|++||.++|+++..+....   .+.|+.|.||+ +.+++|+.|+.|+.||++++ +.++.
T Consensus       272 ----------~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe  337 (503)
T KOG0282|consen  272 ----------SFLSASFDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE  337 (503)
T ss_pred             ----------eeeeeecceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence                      69999999999999999999999997543   47899999988 89999999999999999998 55554


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCC
Q 001224          663 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  742 (1120)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  742 (1120)
                      ...                                                                             
T Consensus       338 Yd~-----------------------------------------------------------------------------  340 (503)
T KOG0282|consen  338 YDR-----------------------------------------------------------------------------  340 (503)
T ss_pred             HHh-----------------------------------------------------------------------------
Confidence            422                                                                             


Q ss_pred             CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224          743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  822 (1120)
Q Consensus       743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~  822 (1120)
                                   |.+.|..+.|-++|+++++++.|+.++||+...                      +..+......  
T Consensus       341 -------------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~----------------------~v~ik~i~~~--  383 (503)
T KOG0282|consen  341 -------------HLGAILDITFVDEGRRFISSSDDKSVRIWENRI----------------------PVPIKNIADP--  383 (503)
T ss_pred             -------------hhhheeeeEEccCCceEeeeccCccEEEEEcCC----------------------Cccchhhcch--
Confidence                         667888999999999999999999999998632                      2222211111  


Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC---ceeeeecCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~---~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      +.....++..+|++.+++.-+ |+.|.++.+...   .....+.+|.  +.-..+.||| ||++|++|+.||.+.+||..
T Consensus       384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeech
Confidence            445567899999999999988 999999997532   2234577774  4567899999 99999999999999999999


Q ss_pred             cceeeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEE
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS  936 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  936 (1120)
                      +-+++..+++|...+..+.|+|.. ..+|+++.||.|++|+
T Consensus       463 t~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  463 TTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            999999999999999999999864 6799999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.8e-30  Score=243.82  Aligned_cols=287  Identities=16%  Similarity=0.272  Sum_probs=229.0

Q ss_pred             cccCCCCceEEEEEcC---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          421 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~sp---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      +..||+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.   ++.||.+.|++...+.+..  ..++++.|-+.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence            4679999999999997   89999999999999998989998777   7999999999999998877  58999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      +|||.-+|..+++|. |..-|.+++|+.  |.++|++|+.++.+|+||++..+. ...+.+|.+.|              
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I--------------  146 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI--------------  146 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc--------------
Confidence            999999999999998 888999999854  457999999999999999986543 22333333333              


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                                                         ..+-|....+.+++++.|++||+||.+++
T Consensus       147 ---------------------------------------------------r~v~wc~eD~~iLSSadd~tVRLWD~rTg  175 (334)
T KOG0278|consen  147 ---------------------------------------------------RTVLWCHEDKCILSSADDKTVRLWDHRTG  175 (334)
T ss_pred             ---------------------------------------------------eeEEEeccCceEEeeccCCceEEEEeccC
Confidence                                                               33333334444555555666666665554


Q ss_pred             chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                      . .++.+                                                                         
T Consensus       176 t-~v~sL-------------------------------------------------------------------------  181 (334)
T KOG0278|consen  176 T-EVQSL-------------------------------------------------------------------------  181 (334)
T ss_pred             c-EEEEE-------------------------------------------------------------------------
Confidence            1 00000                                                                         


Q ss_pred             cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224          737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                                 .                                                    
T Consensus       182 ---------------------------~----------------------------------------------------  182 (334)
T KOG0278|consen  182 ---------------------------E----------------------------------------------------  182 (334)
T ss_pred             ---------------------------e----------------------------------------------------
Confidence                                       0                                                    


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                            ....|+++.++++|++|.++..+.|.+||..+...++.++ -...|.+..++| +...+++|++|+.++.||..
T Consensus       183 ------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  183 ------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             ------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEecc
Confidence                  2344566667777777777777788888888888877776 345699999999 77899999999999999999


Q ss_pred             cceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224          897 VDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  941 (1120)
Q Consensus       897 ~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~  941 (1120)
                      +++.+..+ ++|.++|.||.|+|||...++|+.||+|++|.+..++
T Consensus       255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            99998886 9999999999999999999999999999999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1e-30  Score=256.52  Aligned_cols=274  Identities=18%  Similarity=0.358  Sum_probs=222.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  672 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  672 (1120)
                      ..+++|..|++|+|||..+..++..+.+|.+  .|.|+.|  +.+.+++|+.|.+|++||.+++ ++++++-+       
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG--SVLCLqy--d~rviisGSSDsTvrvWDv~tg-e~l~tlih-------  275 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTG--SVLCLQY--DERVIVSGSSDSTVRVWDVNTG-EPLNTLIH-------  275 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhcCCC--cEEeeec--cceEEEecCCCceEEEEeccCC-chhhHHhh-------
Confidence            3589999999999999999999999987754  7877777  5679999999999999999999 66655533       


Q ss_pred             cCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC
Q 001224          673 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  752 (1120)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~  752 (1120)
                                                                                                      
T Consensus       276 --------------------------------------------------------------------------------  275 (499)
T KOG0281|consen  276 --------------------------------------------------------------------------------  275 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224          753 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  832 (1120)
Q Consensus       753 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~  832 (1120)
                         |...|..+.|+.  .++++++.|..+.+||+...                    +...+...+.+  |...|..+.|
T Consensus       276 ---HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sp--------------------s~it~rrVLvG--HrAaVNvVdf  328 (499)
T KOG0281|consen  276 ---HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASP--------------------TDITLRRVLVG--HRAAVNVVDF  328 (499)
T ss_pred             ---hcceeEEEEEeC--CEEEEecCCceeEEEeccCc--------------------hHHHHHHHHhh--hhhheeeecc
Confidence               455666677754  35888888999999887321                    11122223434  9999999998


Q ss_pred             ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccce
Q 001224          833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  911 (1120)
Q Consensus       833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V  911 (1120)
                        |.+++++++ |.+|++|++.+++.++++.+|...|.|+.+   .++++++|+.|.+|++||+..|.+++.++||..-|
T Consensus       329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv  403 (499)
T KOG0281|consen  329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV  403 (499)
T ss_pred             --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh
Confidence              556999998 999999999999999999999999999988   57899999999999999999999999999999999


Q ss_pred             EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee
Q 001224          912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  991 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~  991 (1120)
                      .++.|  |.+.++||+.||+|+|||+.++.....                      |                  ...-|
T Consensus       404 RciRF--d~krIVSGaYDGkikvWdl~aaldpra----------------------~------------------~~~~C  441 (499)
T KOG0281|consen  404 RCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRA----------------------P------------------ASTLC  441 (499)
T ss_pred             hheee--cCceeeeccccceEEEEecccccCCcc----------------------c------------------ccchH
Confidence            99999  678999999999999999988532110                      0                  00112


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      +..+.  .|++.|..+.|  |...+++++.|.+|-|||..++-.-
T Consensus       442 l~~lv--~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  442 LRTLV--EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             HHhhh--hccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            33333  67889999999  7888999999999999998776544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.9e-28  Score=267.27  Aligned_cols=285  Identities=28%  Similarity=0.482  Sum_probs=240.4

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEe
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  545 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  545 (1120)
                      ++.+|.++|++++|+|+++  ++++++.|+.|++||+.+++....+..|...+..+.|.+.  +.++++++.||.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence            4678999999999999998  7999999999999999999888899999999988888654  46899999999999999


Q ss_pred             cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC
Q 001224          546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  625 (1120)
Q Consensus       546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  625 (1120)
                      +...+....+..+...+.++.+++++                     ..+++++.+|.|++||+.+++....+..+  ..
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~  136 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPDG---------------------RILSSSSRDKTIKVWDVETGKCLTTLRGH--TD  136 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCCC---------------------CEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence            99876666666665556666655554                     46777777999999999988888888744  34


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224          626 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  705 (1120)
Q Consensus       626 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1120)
                      .+.+++|+|++.++++++.++.|++||+.++ +....+                                          
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~------------------------------------------  173 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATL------------------------------------------  173 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeE------------------------------------------
Confidence            6999999999999998888999999997543 100000                                          


Q ss_pred             ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (289)
T cd00200         174 --------------------------------------------------------------------------------  173 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC
Q 001224          786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  864 (1120)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~  864 (1120)
                                                       .  .|...+.+++++|+++.+++++ ++.|++||+.+++.+..+..|
T Consensus       174 ---------------------------------~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  218 (289)
T cd00200         174 ---------------------------------T--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH  218 (289)
T ss_pred             ---------------------------------e--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence                                             0  0455677888888888888777 899999999888888888788


Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          865 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      ...+.+++|+| ++.++++++.||.|++|++.+++....+.+|...|.+++|++++.+|++++.|+.+++|+
T Consensus       219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88999999999 788998888899999999999999999999999999999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.5e-28  Score=267.79  Aligned_cols=246  Identities=27%  Similarity=0.439  Sum_probs=209.1

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      .+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++...                   .+..|...+..+.|+|++++
T Consensus         6 ~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~   65 (289)
T cd00200           6 KGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY   65 (289)
T ss_pred             cccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence            35999999999999999 58899999999999999876544                   25678889999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEE
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  520 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  520 (1120)
                      |++++.||.|++|++.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...|.+
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  140 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS  140 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence            9999999999999999876554   5778999999999999977  7888888999999999999999999999999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      ++|++.  +.++++++.|+.|++||+...+....+..+...+.++.++|++                     +.+++++.
T Consensus       141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~  197 (289)
T cd00200         141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSS  197 (289)
T ss_pred             EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecC
Confidence            998765  4688888889999999998776666666555555555555554                     57888888


Q ss_pred             CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++.|++||+.+++.+..+..+.  ..+.++.|+|++.++++++.+|.|++|++.++
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            9999999999988888775443  37899999999999998888999999998654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-29  Score=238.64  Aligned_cols=295  Identities=18%  Similarity=0.283  Sum_probs=229.4

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.||..+++.+.++.+|.+|.+|+.|.++.||--.+|+.+.   ++.||.+.|+|+..+.+.+  .++||+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            588999999999999999999999999999999998888776   8999999999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-----CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      |+++|+++.+++ ...+|..+.|++..  ++++....     .+.|.++|++....                        
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------  132 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------  132 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence            999999999998 56788888886544  34443332     23444444432110                        


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                                                      +....++...+..+.  ..++.+-|+|-+++|++|..||.|..||+++
T Consensus       133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence                                            111334444444333  3688899999999999999999999999988


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      +.+.+...                                                                        
T Consensus       179 g~~~v~s~------------------------------------------------------------------------  186 (327)
T KOG0643|consen  179 GKELVDSD------------------------------------------------------------------------  186 (327)
T ss_pred             Cceeeech------------------------------------------------------------------------
Confidence            73221100                                                                        


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (327)
T KOG0643|consen  187 --------------------------------------------------------------------------------  186 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001224          816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  888 (1120)
Q Consensus       816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------  888 (1120)
                           ..|...|+.+.+++|..++++++ |.+-++||..+.++++++. ...++++.+++|.....+..|+.+-      
T Consensus       187 -----~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  187 -----EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT  260 (327)
T ss_pred             -----hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence                 01667788888999999999999 8999999999999999987 4567999999994444444444332      


Q ss_pred             -------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          889 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       889 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                             .-++|++...+.+..+++|-++|++|+|+|||+..+||+.||.|++.-.+.
T Consensus       261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                   122333333456677899999999999999999999999999999987665

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.3e-30  Score=248.40  Aligned_cols=292  Identities=19%  Similarity=0.298  Sum_probs=238.4

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....+.+..|+|||.++++++-||.|.+|++.+++...+-+..+.         . ..+.       ++..|.|+.||.|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d-~fMM-------md~aVlci~FSRD  274 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------D-NFMM-------MDDAVLCISFSRD  274 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------c-ceee-------cccceEEEeeccc
Confidence            456678899999999999999999999999866554333332221         1 1111       6889999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      ..++|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.++++.-+.+|++++.++||++.|+.
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            99999999 9999999999999999987 8999999999999 8888999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCcee
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLEC  991 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~~~~~~  991 (1120)
                      ..|++||..+++++.||+|+||+..+.++.     ..+.... ...+|..+..-|. -..++++ ..++|.|-++. |+.
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~-----~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv  426 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECL-----STFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV  426 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhh-----hhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence            999999999999999999999999996653     3332211 1246777777664 4455554 66788888875 777


Q ss_pred             eeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224          992 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus       992 ~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
                      ++.+..+.. .+..-+.+.||.|.++++.++|+.++.|.+.+|.+...+..+..          -++.++-+|+ .+.|+
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk----------dvIGl~HHPH-qNllA  495 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK----------DVIGLTHHPH-QNLLA  495 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc----------cccccccCcc-cchhh
Confidence            777764322 45677788999999999999999999999999999988772222          2346889995 68999


Q ss_pred             EEeCCCcEEEEec
Q 001224         1071 LGLSDGGVHVFEP 1083 (1120)
Q Consensus      1071 s~~~Dg~v~vW~~ 1083 (1120)
                      +-++||.+++|..
T Consensus       496 sYsEDgllKLWkp  508 (508)
T KOG0275|consen  496 SYSEDGLLKLWKP  508 (508)
T ss_pred             hhcccchhhhcCC
Confidence            9999999999963

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7.6e-28  Score=297.77  Aligned_cols=253  Identities=14%  Similarity=0.184  Sum_probs=200.9

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  438 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  438 (1120)
                      ...|...|++++|+|+|+ ++|+|+.|++|+|||+........           ........+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence            345899999999999999 599999999999999864211000           0000000122 346899999987 58


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      .+||+++.||+|+|||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++.++..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999887655   6789999999999997 666  7999999999999999999999888855 67


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      |.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|..+.|. +                     +.+++
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~---------------------~~~lv  676 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D---------------------SSTLV  676 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C---------------------CCEEE
Confidence            88888853 456899999999999999998754 344556666666666664 2                     34799


Q ss_pred             EEeCCCeEEEEECCCC------ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.|+.|++||+..+      ..+..+.+|.  ..+.+++|++++.+|++|+.|+.|++|+....
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999743      4566776554  46888999999999999999999999997544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=5e-28  Score=299.34  Aligned_cols=321  Identities=11%  Similarity=0.150  Sum_probs=240.2

Q ss_pred             CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224          729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  808 (1120)
Q Consensus       729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~  808 (1120)
                      +|.+++|+............-.  ...|...|.+++|+|+|+++++++.|+.|++|++......  +..          .
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~~----------~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGD--LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GRD----------I  522 (793)
T ss_pred             hhhhhhhcccceEEEEeecccc--ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--ccc----------c
Confidence            4556666665433211111101  1337889999999999999999999999999997431100  000          0


Q ss_pred             CCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224          809 PSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  886 (1120)
Q Consensus       809 ~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  886 (1120)
                        ..... .+   .+...+.+++|++ ++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.
T Consensus       523 --~~~~~-~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~  596 (793)
T PLN00181        523 --HYPVV-EL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD  596 (793)
T ss_pred             --ccceE-Ee---cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence              00000 01   1346788999987 478899988 9999999999999999999999999999999767899999999


Q ss_pred             CCcEEEEEeecceeeEeecccccceEEEEEc-cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224          887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  965 (1120)
                      ||.|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.||.|++||+.....    ......+|..   .|..+.
T Consensus       597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~~---~V~~v~  668 (793)
T PLN00181        597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHSK---TVSYVR  668 (793)
T ss_pred             CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCCC---CEEEEE
Confidence            999999999999888888765 679999995 5799999999999999999987432    2233345553   789999


Q ss_pred             EccCCcEEEE-EeCCeEEEEEcCCc------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee
Q 001224          966 FHQDQIHFLV-VHETQLAIFETTKL------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus       966 fspdg~~la~-~~d~~v~i~d~~~~------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
                      |. ++.+|++ +.|+.|++||+..+      ..+..+.  +|...+..++|++++.+|++|+.|+.|+||+......+..
T Consensus       669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence            97 5667776 68999999999753      3445544  7899999999999999999999999999999877655533


Q ss_pred             eCCCcc--cC---CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1039 INPSAY--LP---AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1039 ~~~~~~--~~---~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      +.....  ..   ..+....|.  +++|+| ++.+|++|+.||.|+||++
T Consensus       746 ~~~~~~~~~~~~~~~~~~~~V~--~v~ws~-~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        746 YKFKTIDPVSGLEVDDASQFIS--SVCWRG-QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EecccCCcccccccCCCCcEEE--EEEEcC-CCCeEEEecCCCcEEEEec
Confidence            221110  00   011122244  899999 6899999999999999986

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.1e-27  Score=217.58  Aligned_cols=275  Identities=17%  Similarity=0.250  Sum_probs=211.4

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ..+.++.....|.+++|+|.|. |.|+|++.++.+|-....-..+..    -.+.....+....+-.+.|.+.|+|.+||
T Consensus        24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEec
Confidence            3456777889999999999999 799999999999876543221110    00001111122223456799999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEec-CCCcEEEEECCCCceeE
Q 001224          436 PDGSLFGVAYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s-~d~~i~vwd~~~~~~~~  509 (1120)
                      |+|.+||+|+.|.+|++.-.  ++......-.++.-|.+.|..++|..+   +.. +|++++ .|..|++-|..+|+..+
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence            99999999999999998644  444444455578889999999999754   233 566554 68889999999999999


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                      .+.||++.|.++-   +-++.++++|+.|.+|++||++-..+..++...              +.-.|.....+..++++
T Consensus       178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd  240 (350)
T KOG0641|consen  178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD  240 (350)
T ss_pred             eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence            9999999998874   234579999999999999999865554433221              11123334467778888


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      |.|+.|++|-.|....+||++.++.++.+..|.  ..|.|+.|+|...++++++.|..|++-|+..
T Consensus       241 psgrll~sg~~dssc~lydirg~r~iq~f~phs--adir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS--ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCcceeeeccCCCceEEEEeeCCceeeeeCCCc--cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            888899999999999999999999999997664  4799999999999999999999999998754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=9.6e-28  Score=232.37  Aligned_cols=276  Identities=14%  Similarity=0.184  Sum_probs=203.3

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCC-CcccccccccCCCCceEEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC-SMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l  432 (1120)
                      ..+..++-.|++++.+.+|||||. |+|+|+.|..|+|.|++.--... .+..+..-... ..|.. ..+-.|.++|+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l  178 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDL  178 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccce
Confidence            334556667999999999999999 79999999999999997211000 00000000011 11222 2477899999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-  511 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-  511 (1120)
                      .|+|....|++|+.|++|+++|.......+.++.++ ...+|.++.|.|.|.  +++.|.+--++++||+.+-+|...- 
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence            999999999999999999999998654333333333 456899999999999  7999999999999999998886544 


Q ss_pred             --eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          512 --EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       512 --~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                        ..|.+.|+++.+  ++.+.+.++++.||.|++||--+.+++.++...                   |.+..++...|.
T Consensus       256 Pd~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-------------------H~gsevcSa~Ft  314 (430)
T KOG0640|consen  256 PDDQHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-------------------HGGSEVCSAVFT  314 (430)
T ss_pred             cccccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHHhh-------------------cCCceeeeEEEc
Confidence              468999999886  456689999999999999998877776655321                   222345555566


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC---CcCeEEEcCCCCEEEEEEC-CCcEEEEEccCc
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDG  656 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~  656 (1120)
                      .+++++++.+.|..+++|.+.+++++..+.+.+...   .-+...|+....+++.-.. .+.+.-||.+++
T Consensus       315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            666699999999999999999999999997653221   1234556666666655433 467788887766

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.2e-29  Score=233.55  Aligned_cols=299  Identities=17%  Similarity=0.269  Sum_probs=252.3

Q ss_pred             ccccccEEEEEEc---CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224          754 NLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  830 (1120)
Q Consensus       754 ~~~~~~i~~l~~s---~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l  830 (1120)
                      .+|..+|-.++|+   |+|-+|++++.||.-.+                      .+-.+|..+.. +.  +|.+.|.+.
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~   65 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA   65 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence            6799999999997   58999999999876443                      23345554443 22  499999999


Q ss_pred             EEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEeecccc
Q 001224          831 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS  908 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~  908 (1120)
                      +++.+....|+++ |-+-++||.-++..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.. .....+.+|.
T Consensus        66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            9999999999988 8999999999999999887 888899999999 9999999999999999999874 3567789999


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  988 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~  988 (1120)
                      +.|..+.|....+.++|.+.|++||+||..+++..+...+  .       ..|+++-.++||++|.++..+.|..||..+
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--N-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec--C-------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence            9999999999889999999999999999999765332221  1       368999999999999999999999999999


Q ss_pred             ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224          989 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus       989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
                      ...++.+..   ...|.+..++|+...+++|++|..++.||..+|+.+....      .||.+. |.  ++.|+| ||..
T Consensus       215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dGE~  281 (334)
T KOG0278|consen  215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DGEL  281 (334)
T ss_pred             ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CCce
Confidence            999888764   5689999999999999999999999999999999997742      243333 55  899999 7999


Q ss_pred             EEEEeCCCcEEEEecCCCC--CCCCCCCCCCCCCC
Q 001224         1069 FALGLSDGGVHVFEPLESE--GKWGVPPPVDNGST 1101 (1120)
Q Consensus      1069 l~s~~~Dg~v~vW~~~~~~--~~~~~~~p~~~~~~ 1101 (1120)
                      .++||.||+|++|....++  +.|.-..|-+.+.-
T Consensus       282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee  316 (334)
T KOG0278|consen  282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE  316 (334)
T ss_pred             eeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence            9999999999999988777  67777777554443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=224.67  Aligned_cols=277  Identities=16%  Similarity=0.237  Sum_probs=230.6

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      .+++|...|.+|+|+.+|.  .+++|+.|+++.+|++..++....  ..+|.+.|..++|++... ..+++++.|++|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            5778999999999999999  699999999999999998866553  468999999999988655 68999999999999


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      ||.+..++..........                      ..+.|+|+|+++++++.|..|.+.|.++.+.+...+... 
T Consensus        92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-  148 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-  148 (313)
T ss_pred             EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence            999988876655443332                      235677777799999999999999999988777665433 


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224          624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  703 (1120)
Q Consensus       624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1120)
                        .+..++|+.++.+++.....|+|.|.....- +.+..                                         
T Consensus       149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~s-----------------------------------------  184 (313)
T KOG1407|consen  149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQS-----------------------------------------  184 (313)
T ss_pred             --eeeeeeecCCCCEEEEecCCceEEEEecccc-ccccc-----------------------------------------
Confidence              4677888888888777777788887764322 10000                                         


Q ss_pred             ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224          704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  783 (1120)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v  783 (1120)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (313)
T KOG1407|consen  185 --------------------------------------------------------------------------------  184 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224          784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~  862 (1120)
                                                        +.  .|.....||.|+|+|+++|+|+ |..+.+||++..-+++.+.
T Consensus       185 ----------------------------------i~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  185 ----------------------------------IK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             ----------------------------------cc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence                                              01  1777788899999999999999 9999999999999999999


Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  930 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  930 (1120)
                      .+.-+|..+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||.++.|.
T Consensus       229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCC
Confidence            9999999999999 99999999999999999999999888887 778899999999999999887763

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.4e-27  Score=236.76  Aligned_cols=251  Identities=16%  Similarity=0.299  Sum_probs=202.1

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      +.+....+-|.+.|.+|...  ++ .+.+|+.||.++|||.. |+...                   .+.||.++|.+++
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~  151 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA  151 (423)
T ss_pred             CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence            44556677899999999998  55 49999999999999987 44443                   3789999999888


Q ss_pred             EcCC---CCeEEEEECCCeEEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-----
Q 001224          434 WSPD---GSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----  504 (1120)
Q Consensus       434 ~spd---g~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-----  504 (1120)
                      |--.   ...+++++.|.++++|.++.+... .....-.||...|-+|+..++|.  .+++|+.|.+|.||+..+     
T Consensus       152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~  229 (423)
T KOG0313|consen  152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE  229 (423)
T ss_pred             EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence            8543   336999999999999999877543 22223459999999999999999  699999999999999321     


Q ss_pred             --------------------CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeE
Q 001224          505 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  564 (1120)
Q Consensus       505 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  564 (1120)
                                          +.++.++.||..+|.++.|..   ...+++++-|.+|+.||+.+++...++...      
T Consensus       230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~------  300 (423)
T KOG0313|consen  230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------  300 (423)
T ss_pred             ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC------
Confidence                                235667889999999999965   258999999999999999987766554432      


Q ss_pred             EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001224          565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA  640 (1120)
Q Consensus       565 ~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~  640 (1120)
                                      ..+.++.++|..++|++|+.|..+++||.+++.   ....+.+|  ...|.++.|+| +...|+
T Consensus       301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~  362 (423)
T KOG0313|consen  301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV  362 (423)
T ss_pred             ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence                            255666677777799999999999999998764   23444444  55899999999 567789


Q ss_pred             EEECCCcEEEEEccCc
Q 001224          641 VSTNDNGIKILATSDG  656 (1120)
Q Consensus       641 ~~~~dg~i~iwd~~~~  656 (1120)
                      +|+.|+++++||+++.
T Consensus       363 S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  363 SGSYDNTVKLWDVRST  378 (423)
T ss_pred             EEecCCeEEEEEeccC
Confidence            9999999999999876

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=4.3e-26  Score=240.66  Aligned_cols=631  Identities=16%  Similarity=0.182  Sum_probs=342.2

Q ss_pred             cccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceee---eeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          421 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      ++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-...   ....+.+..-.|.++.|.|....  |+..+..|.
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence            5889999999999999 78899999999999999998543211   11223344557899999998775  444455789


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEE
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      ++|||+.+++.+..+.+|...|.+..|  +.||.+|++.+.|+.|+|||.+... .++...+|++.       .|.+   
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-------rdsR---  219 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-------RDSR---  219 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccc-------hhhe---
Confidence            999999999999999999999999988  5778999999999999999998743 44444444431       1111   


Q ss_pred             ecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEE
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIK  649 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  649 (1120)
                                +.|--+-..|++.+    .-..|++||.+. +..+.++...... .|.---|.||.++|+.++ .+.++.
T Consensus       220 ----------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~  288 (1012)
T KOG1445|consen  220 ----------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF  288 (1012)
T ss_pred             ----------eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence                      22322223466544    356799999875 3456666544332 355567889888766554 467788


Q ss_pred             EEEccCcchhhhhcccccccccccCCCCCC--Ccccchhhh-------HhhhhccccccccccccccCCCCCcccccCC-
Q 001224          650 ILATSDGIRLLRTFENLAYDASRTSENSKP--TISPISAAA-------AAAATSAGLADRAASMVSIPGMNGDVRSLAD-  719 (1120)
Q Consensus       650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  719 (1120)
                      .+.+......+.....+..+.......-.+  ++..+..-.       ..+.+...   ...|+.....|..+...... 
T Consensus       289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~---y~VPRksyrdFH~DLfPeT~G  365 (1012)
T KOG1445|consen  289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIP---YIVPRKSYRDFHSDLFPETRG  365 (1012)
T ss_pred             EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecc---cccchhhhhhhhhhhCccccC
Confidence            887765422221111111110000000000  000000000       00000000   00011111111000000000 


Q ss_pred             -------CcceeeccCCCcceeeecccCCCCc-----c------------ce-eec-----------------cCC----
Q 001224          720 -------VKPRITEESNDKSKVWKLTELSEPN-----Q------------CR-SLR-----------------LPE----  753 (1120)
Q Consensus       720 -------~~~l~~~~~d~~i~vw~~~~~~~~~-----~------------~~-~~~-----------------~~~----  753 (1120)
                             +..+.  +.+..+.-..+.......     .            .. .+.                 .|.    
T Consensus       366 ~~p~~~ageWln--G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~q  443 (1012)
T KOG1445|consen  366 AEPGCTAGEWLN--GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQ  443 (1012)
T ss_pred             CccCcCccceec--CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccC
Confidence                   00000  000000000000000000     0            00 000                 000    


Q ss_pred             --ccccccEEEEEEcC----CC------ceEEEeccCc--------eEEEeeecc-----------------cccCC---
Q 001224          754 --NLRATKISRLIFTN----SG------NAILALASNA--------IHLLWKWQR-----------------TERNS---  793 (1120)
Q Consensus       754 --~~~~~~i~~l~~s~----~g------~~l~~~~~dg--------~i~vw~~~~-----------------~~~~~---  793 (1120)
                        ......+..+.+-|    +|      ..=.+-+...        .+.+-.-..                 ++.-+   
T Consensus       444 paV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~  523 (1012)
T KOG1445|consen  444 PAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQP  523 (1012)
T ss_pred             CCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCC
Confidence              00000111111100    00      0000000000        000000000                 00000   


Q ss_pred             -C--Cccc-ccc------Cc----eee------cCCCCCcccc-----cCCCCCCCCCccEEEEccCCCEEEE---EeCC
Q 001224          794 -S--GKAT-ASV------AP----QLW------QPPSGIMMTN-----DVTDSNPEEAVPCFALSKNDSYVMS---ASGG  845 (1120)
Q Consensus       794 -~--~~~~-~~~------~~----~~w------~~~~g~~~~~-----~~~~~~~~~~v~~l~~s~d~~~l~~---~sdg  845 (1120)
                       .  +..+ ++.      .+    .+.      .-..|.....     .+......-+-.+=-|+.+.+++|+   |+.|
T Consensus       524 ~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG  603 (1012)
T KOG1445|consen  524 PVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGG  603 (1012)
T ss_pred             CcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCc
Confidence             0  0000 000      00    000      0000100000     0000000011112234445566665   3478


Q ss_pred             cEEEEEcCCC-ceeee-ecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-------eeEeecccccceEEE
Q 001224          846 KISLFNMMTF-KTMAT-FMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-------VKSKLKGHSKRITGL  914 (1120)
Q Consensus       846 ~i~vwd~~~~-~~~~~-~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l  914 (1120)
                      .|.||++... ++.-. +.+  ....|+.+.|.|.|...||++++||.|++|.+..+.       .-..+.+|...|+++
T Consensus       604 ~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~sl  683 (1012)
T KOG1445|consen  604 VIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSL  683 (1012)
T ss_pred             eEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEE
Confidence            9999999742 22111 111  245699999999999999999999999999997643       335678999999999


Q ss_pred             EEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224          915 AFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  992 (1120)
Q Consensus       915 ~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~  992 (1120)
                      .|+|- ...|++++.|.+|++||+.+.+.     ...+.+|..   .|..++|||||+.+|+ +.||+|++|+.++++..
T Consensus       684 RfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  684 RFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             EecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            99985 47899999999999999998553     344567765   8999999999999999 89999999999877643


Q ss_pred             eccccCCCCCCeeEEEECCCCcEEEEEEcC----CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224          993 KQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus       993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
                      ..-....-...-..|.|.-||+++++.+.|    ..|.+||..+..+...........       -.++--.|.++.+-+
T Consensus       756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva-------ps~LvP~YD~Ds~~l  828 (1012)
T KOG1445|consen  756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA-------PSPLVPHYDYDSNVL  828 (1012)
T ss_pred             cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc-------CccccccccCCCceE
Confidence            221111113344567888899999988877    468999987654321111000000       112234466655667


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 001224         1069 FALGLSDGGVHVFEPLESEGKWGVPPPV 1096 (1120)
Q Consensus      1069 l~s~~~Dg~v~vW~~~~~~~~~~~~~p~ 1096 (1120)
                      +++|-.|..|.+|.+...+.-+-.-.|+
T Consensus       829 fltGKGD~~v~~yEv~~esPy~lpl~~f  856 (1012)
T KOG1445|consen  829 FLTGKGDRFVNMYEVIYESPYLLPLAPF  856 (1012)
T ss_pred             EEecCCCceEEEEEecCCCceeeecccc
Confidence            8899999999999988766333333333

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.9e-27  Score=241.59  Aligned_cols=286  Identities=18%  Similarity=0.276  Sum_probs=235.7

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....|.+++|+|...+=++.+..-.+.+|+..+                      -..... +.  .....+.++.|-.|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence            557899999999766544444455666666422                      111110 11  15678999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  914 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  914 (1120)
                      |+++|+|+ .|.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.|.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            99999999 79999999888778899999999999999999999999999999999999999988777899999999999


Q ss_pred             EEccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeee
Q 001224          915 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  993 (1120)
Q Consensus       915 ~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~  993 (1120)
                      +|+|-. ..++|||.||+|++||+....   ........|     .+|..+.|-|.|..+|+++...|+|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999875 478999999999999998843   233444434     37999999999999999999999999999766554


Q ss_pred             ccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224          994 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus       994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      .... .|...|+|+++..+++.|++|+.|+.|+|||+.+.+.+..+.    .|+.     |  ++++-+| |++.++.|.
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----v--Lsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----V--LSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----e--eeEEecC-CCceEEEec
Confidence            4332 489999999999999999999999999999999999998877    5543     4  4899999 679999999


Q ss_pred             CCCcEEEEecCCCC
Q 001224         1074 SDGGVHVFEPLESE 1087 (1120)
Q Consensus      1074 ~Dg~v~vW~~~~~~ 1087 (1120)
                      .||.+.+=+....+
T Consensus       299 snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  299 SNGLVSIRRREVKK  312 (487)
T ss_pred             ccceeeeehhhccc
Confidence            99999888655544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.9e-27  Score=240.05  Aligned_cols=266  Identities=18%  Similarity=0.275  Sum_probs=213.7

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeec----cCCCCcccccccccCCCCceEEE
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD----LGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      ....-.|.-.|+||+++||+++ ..+++.+|+|.=|++.+|+....    +|.    ++....+....- .+|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            4455569999999999999996 99999999999999999986521    111    111122222222 4899999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      +.|+||+|||+|+.|..|.||+.++.+.+.   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999988666   6899999999999987666  48999999999999999999999999


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ||.+.|.++......  ..+..|+.|+++++|++.. +....+.++...+.+++|-.+.                     
T Consensus       284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~---------------------  339 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE---------------------  339 (479)
T ss_pred             CCccceeeechhccc--ceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc---------------------
Confidence            999999998754332  4555566999999999943 4445556666666666665543                     


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                       ++++|+.+|.|.+|++...+++.+.....+          ...|++++..|...++++|+.+|.|++|-+.++.+
T Consensus       340 -HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  340 -HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             -ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence             599999999999999999998877652211          12688999999999999999999999999988744

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=4.3e-28  Score=244.59  Aligned_cols=257  Identities=18%  Similarity=0.274  Sum_probs=212.4

Q ss_pred             CCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCc
Q 001224          350 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  428 (1120)
Q Consensus       350 ~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  428 (1120)
                      .+.+|......+. |.+.|..+.|-++... |++|+.|..|.+|++..++.-.                 ..+|.|..++
T Consensus       160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~  221 (459)
T KOG0288|consen  160 EDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGN  221 (459)
T ss_pred             hcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCC
Confidence            3444566666666 9999999999999774 9999999999999998766211                 1157888899


Q ss_pred             eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224          429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  508 (1120)
Q Consensus       429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~  508 (1120)
                      |+++.|.++++++++++.|+.+++|++...+...   +|.||.+.|+++.|.....  .+++|+.|.+|+.||+..+.|.
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS  296 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence            9999999999999999999999999999977554   7999999999999998877  4999999999999999999998


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                      +++-. ...+..|+..    ...+++|-.|+.|++||.++..+......++ .|+++..+++|                 
T Consensus       297 kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g-----------------  353 (459)
T KOG0288|consen  297 KTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG-----------------  353 (459)
T ss_pred             ccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-----------------
Confidence            87652 3445555542    2578899999999999999887777666554 56666666655                 


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                          ..+++++.|.++.+.|+++.+....+...+.  ....+.+.|||++.|+++|+.||.|+||++.++
T Consensus       354 ----~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  354 ----LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             ----eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence                4788999999999999999998888865432  124788999999999999999999999999887

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.1e-26  Score=231.94  Aligned_cols=301  Identities=16%  Similarity=0.238  Sum_probs=223.6

Q ss_pred             CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCC-CceEEEEecCCCcEEEEEC
Q 001224          424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPN-KQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~-~~~~l~s~s~d~~i~vwd~  502 (1120)
                      -|.+.|.++...  ++++++|+.||.++|||..+.. .   +.+.||.++|.+++|--.+ ....+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E---EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            488899999988  8999999999999999998753 2   2588999999988874322 2225999999999999999


Q ss_pred             CCCce----eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc------eeEEEEcCCCC
Q 001224          503 TNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW------CTTMAYSADGT  572 (1120)
Q Consensus       503 ~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~s~~g~  572 (1120)
                      +.++.    +....||...|.++..  .++|..+++|+.|.+|.+|+.... ..-.+......      -..-.-.....
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccchhhhhhhhhhhcccccCce
Confidence            87754    3344699999999986  455679999999999999993221 11000000000      00000000000


Q ss_pred             eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                      ..+.||++ .+..+.|++ ...+++++.|.+|+.||+.++..+..+....   .++|+.++|..++|++|+.|..+++||
T Consensus       254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence            22333333 556666665 4569999999999999999999998887554   489999999999999999999999999


Q ss_pred             ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224          653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  732 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  732 (1120)
                      .+++..                                                                        .+
T Consensus       329 PR~~~g------------------------------------------------------------------------s~  336 (423)
T KOG0313|consen  329 PRTGDG------------------------------------------------------------------------SV  336 (423)
T ss_pred             CCCCCC------------------------------------------------------------------------ce
Confidence            876510                                                                        00


Q ss_pred             eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                                                  ....                                                
T Consensus       337 ----------------------------v~~s------------------------------------------------  340 (423)
T KOG0313|consen  337 ----------------------------VSQS------------------------------------------------  340 (423)
T ss_pred             ----------------------------eEEe------------------------------------------------
Confidence                                        0000                                                


Q ss_pred             cccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCc-eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224          813 MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  889 (1120)
Q Consensus       813 ~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~  889 (1120)
                           +  .+|.+.|.++.++|... .|++|+ |+++++||+++.+ .+..+.+|...|.++.|.  ++.+|++|+.|.+
T Consensus       341 -----~--~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  341 -----L--IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNK  411 (423)
T ss_pred             -----e--ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcce
Confidence                 1  12888889999998665 456677 9999999999876 889999999999999998  5779999999999


Q ss_pred             EEEEEe
Q 001224          890 IQIYNV  895 (1120)
Q Consensus       890 v~vwd~  895 (1120)
                      |+|+.-
T Consensus       412 l~i~~~  417 (423)
T KOG0313|consen  412 LRIFKG  417 (423)
T ss_pred             EEEecc
Confidence            999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=2.8e-26  Score=218.31  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=198.2

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      +.+.+|..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+                   +.||++.|+|+..+.+
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~   63 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD   63 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence            34567999999999999999 799999999999999999999884                   8899999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe-----cCCCcEEEEECC-------CC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG  505 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-----s~d~~i~vwd~~-------~~  505 (1120)
                      .++|++|+.|.++++||+++|+++..   + .-..+|..+.|+++|..  ++..     +..+.|.++|++       ..
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            99999999999999999999998763   2 24578999999999994  3333     234679999998       45


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      ++...+..+...++.+.|.+..  ++|++|..||.|..||++++.... ....|...|+.+.+++|..            
T Consensus       138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------  203 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------  203 (327)
T ss_pred             CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc------------
Confidence            6677888888999998886554  799999999999999999865443 3355666666666666664            


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  645 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  645 (1120)
                               ++++++.|.+-++||..+-+.+.++....   ++++.+++|-...++.|+..
T Consensus       204 ---------~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGq  252 (327)
T KOG0643|consen  204 ---------YFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQ  252 (327)
T ss_pred             ---------eEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCCc
Confidence                     89999999999999999999999987553   59999999988777777643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.9e-27  Score=260.66  Aligned_cols=265  Identities=14%  Similarity=0.185  Sum_probs=206.2

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe------------------------------e--------
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------R--------  403 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~------------------------------~--------  403 (1120)
                      .|.+.|+++.||+||+| ||+|+.||.|+||.+...+....                              .        
T Consensus       265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            59999999999999996 99999999999999976211000                              0        


Q ss_pred             ---ceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224          404 ---NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  480 (1120)
Q Consensus       404 ---~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  480 (1120)
                         ...+.+..-.-.+.+...+.||.+.|.+++||.++ +|++++.|.+|++|++...++++    .-.|.+-|+||+|+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN  418 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence               00000000111122334688999999999999765 89999999999999999998887    33599999999999


Q ss_pred             CCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--
Q 001224          481 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--  558 (1120)
Q Consensus       481 ~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  558 (1120)
                      |-+.+ |+++|+-||.||||++...+.+.-...+ .-|+++|+.|  +|+..+.|+.+|.+++|+....+.......+  
T Consensus       419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEecc--CCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            98777 9999999999999999888877655544 7899999855  5789999999999999998875544332211  


Q ss_pred             ------CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEE
Q 001224          559 ------GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF  632 (1120)
Q Consensus       559 ------~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  632 (1120)
                            ...|+++.|.|...                    ..+++.+.|..|+|+|.++..++..+++......-....|
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~--------------------~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asf  554 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDP--------------------DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASF  554 (712)
T ss_pred             cCccccCceeeeeEecCCCC--------------------CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeE
Confidence                  12445554444332                    3688889999999999999999999987766666677899


Q ss_pred             cCCCCEEEEEECCCcEEEEEccCc
Q 001224          633 NKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       633 s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.||++|++++.|..|++|+....
T Consensus       555 s~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  555 SSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCCCEEEEeecCceEEEEeCCCC
Confidence            999999999999999999997543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-27  Score=257.96  Aligned_cols=275  Identities=15%  Similarity=0.241  Sum_probs=213.8

Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeeccccc---------------CCCCcccccc------------------
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGKATASV------------------  801 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~---------------~~~~~~~~~~------------------  801 (1120)
                      .|.+.|.++.||+||++|+++|.|+.|+||.+.....               ...+......                  
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876210               0000000000                  


Q ss_pred             -CceeecCCCCCc---ccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecC
Q 001224          802 -APQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ  876 (1120)
Q Consensus       802 -~~~~w~~~~g~~---~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~  876 (1120)
                       .-.+.+.....+   ....+  .+|...|..+.||.++ +|++++ |.+||+|++...+++..|. |...|+|++|+|.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence             000111111111   11112  3499999999999876 677777 9999999999999999998 9999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224          877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      |.+|+++|+-||.||||++...+.+.-...+ .-|++++|.|||+..+.|+.+|.+++|+....+.....-+....+...
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            9999999999999999999877755444434 789999999999999999999999999999877666555555555444


Q ss_pred             CCCCCcEEEEccCC--cEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          957 TAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       957 ~~~~i~~~~fspdg--~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                      ....|+.+.|.|..  +.|+++.|..|+|||.....++..+..-.....-....|+.||++|++|++|..|+||+.....
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            44579999999754  4888899999999999888888877732334455678999999999999999999999985443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=8.1e-27  Score=264.71  Aligned_cols=304  Identities=18%  Similarity=0.245  Sum_probs=239.8

Q ss_pred             ccccEEEEEEcCCCceEEEec--cCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          756 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      +...|.++..+|+|..+++++  .||.+++|+.+.--.          ....++..-...+.   ....|.+.|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~---~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC---TMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe---eeccccCceeEEEEC
Confidence            455689999999999999999  788999998742110          00111211011111   112399999999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCC------------------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          834 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      |||++||+|+ |+.|.||+...                  ++....+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            9999999999 68899999762                  235677899999999999999 999999999999999999


Q ss_pred             eecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      ..+.+.+..+.+|.+.|-.+.|.|-|++|||-+.|++|+||++......  ..+..+-.+.+.....+.+.|||||.+|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCeec
Confidence            9999999999999999999999999999999999999999997764332  22333333333345678999999999999


Q ss_pred             E--EeC---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-----Cc------------EEEEEEcCCcEEEEEcCC
Q 001224          975 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       975 ~--~~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      +  +.+   ..+.|.+..+.+.-..+.  +|.+++.+++|+|.     .+            .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            9  333   368898888777766666  89999999999981     11            578999999999999988


Q ss_pred             cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+++..+.  .       -.+-.++.++|+| ||..|+.+|.||+|.+..+++.|
T Consensus       314 ~RPl~vi~--~-------lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIH--N-------LFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhh--h-------hhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            77775443  1       1112345999999 79999999999999999998776

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=216.26  Aligned_cols=278  Identities=17%  Similarity=0.215  Sum_probs=223.9

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.. .....++|.+.|-.++|.|.... .+++++.|++|++|
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w   92 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW   92 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence            46789999999999999999999999999999999987533 34457899999999999998777 79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |++.++++.......+.+. ++|  +++|.+++.++.|..|.+.|.++.+....... ..                    
T Consensus        93 d~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~--------------------  148 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KF--------------------  148 (313)
T ss_pred             EeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cc--------------------
Confidence            9999999998886666666 455  45668999999999999999987554433221 11                    


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                       .+.-++|+.+++.++.....|.|.|.....-+++..++.|.  ..+.|+.|+|+|+++|+|+.|-.+.+||+... -+.
T Consensus       149 -e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~  224 (313)
T KOG1407|consen  149 -EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE  224 (313)
T ss_pred             -eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence             23334455455677777778999999999999999998775  47889999999999999999999999997543 111


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      +.+.                                                                            
T Consensus       225 R~is----------------------------------------------------------------------------  228 (313)
T KOG1407|consen  225 RCIS----------------------------------------------------------------------------  228 (313)
T ss_pred             eeec----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (313)
T KOG1407|consen  229 --------------------------------------------------------------------------------  228 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD  887 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  887 (1120)
                       .++-+|+.+.||.||++||+|+ |..|-|-++++|..+..++ +.++...|+|+| ...+||.+++|
T Consensus       229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD  293 (313)
T ss_pred             -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence             0566777788888888888888 7788888888888888776 788899999999 88899988866

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-26  Score=237.98  Aligned_cols=247  Identities=21%  Similarity=0.253  Sum_probs=201.2

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      .....|++++|||...+=+|+.+ .-.|.||+..+.....                   .+..-...|+++.|-.||++|
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll   83 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL   83 (487)
T ss_pred             cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence            35689999999996654344433 2789999988765543                   244456789999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                      |+|...|.|+|+|+.+...++   .+.+|+.+|..+.|+|++.. ++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus        84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999999999977754444   68899999999999999887 89999999999999999999877999999999999


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      +|++-. ++.++||+.||.|++||++.......--.|+.+|..+.+-|.|.                     .+++++ .
T Consensus       160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-G  216 (487)
T KOG0310|consen  160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-G  216 (487)
T ss_pred             ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-C
Confidence            998754 47999999999999999998765554556777888888777765                     455554 5


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ..|++||+.+|........ .|...|+|+.+..++..|++|+-|+.+++||+.+-
T Consensus       217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            6899999996655444332 13457999999999999999999999999996543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=218.24  Aligned_cols=286  Identities=18%  Similarity=0.261  Sum_probs=224.7

Q ss_pred             eEEEEec--CCCeEEEEEeC-----CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-CC
Q 001224          368 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS  439 (1120)
Q Consensus       368 ~~v~~sp--dg~~lla~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~  439 (1120)
                      .++.|||  +++..+|++..     .|++.|-++..++.+..  ++-+|               -.+.+..++||++ ..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence            5688998  44533444433     57899999975554432  22222               3458999999994 56


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      .+++++.||+++|||..-.  -.++..++.|...|.++.|++-.++ .++++|.|++|++|+...+.-++++.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            7888999999999995432  2355578899999999999998777 677889999999999999999999999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      ...|+|... ..+++++.|+++++||++..+....+..|...+.++.|+.-..                    +.+++|+
T Consensus       152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~  210 (311)
T KOG0277|consen  152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG  210 (311)
T ss_pred             EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence            999988654 6999999999999999998887777888887777777765544                    5789999


Q ss_pred             CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCC
Q 001224          600 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  677 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1120)
                      .|+.|++||++.-+ ++..+.+|  .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...    
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~----  284 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL----  284 (311)
T ss_pred             CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence            99999999998754 56666555  44799999999 467899999999999999987767777777666543211    


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          678 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                        .++                                  ..+..++++.+.|..+++|+
T Consensus       285 --Dws----------------------------------~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  285 --DWS----------------------------------LFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             --ccc----------------------------------cccCceeeecccccceeeec
Confidence              111                                  12578899999999999997

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=4.6e-26  Score=257.88  Aligned_cols=237  Identities=18%  Similarity=0.332  Sum_probs=209.7

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      .+...+.|..|. ++  .+.+|+.|.+|++||..++..+..                  -+.||.+.|++++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            367899999999 44  499999999999999999988763                  388999999999999889999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                      ++|+.|.+++|||..+|++..   .+.+|.+.|.++...+.    ++++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999999877   78899999999987543    68899999999999999999999999999999999


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      ..+    +.++++|+.|++|++||+.+.+++.++.+|...|.++.+.+.                      +++++|+.|
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs~D  391 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGSLD  391 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeeeec
Confidence            864    369999999999999999999999999999999998877653                      259999999


Q ss_pred             CeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          602 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       602 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++|++||+.+. +++.++.+|..  .+.  .+...+++|++++.|++|++||..++
T Consensus       392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  392 TTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             cceEeecCCchhhhhhhhcCCcc--ccc--ccccccceeEeccccccEEEeecccC
Confidence            99999999999 99999987755  343  33446789999999999999998777

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=236.83  Aligned_cols=300  Identities=17%  Similarity=0.247  Sum_probs=228.5

Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      .+|...|.++++.|.|..+++|+-|..|++||++.-..+                 -.. .....+.  ....|.++.|+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------~~~-fr~l~P~--E~h~i~sl~ys  223 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------MRS-FRQLQPC--ETHQINSLQYS  223 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------chh-hhccCcc--cccccceeeec
Confidence            447888999999999999999999999999998542110                 000 0111111  56689999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeee------------ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-  899 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-  899 (1120)
                      +.|..|++.+ ....+|+|....+.+..            -++|...++|.+|+|.....+++++.||++||||+..-+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            9999988887 78899999876554433            256888999999999888899999999999999998643 


Q ss_pred             eeEee-----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          900 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       900 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      .+..+     .+-.-+++.++|++||+++|.|+.||.|.+|+........  .+.....|.+ ...|+++.||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            22332     2344578999999999999999999999999985533322  2333333432 23799999999999999


Q ss_pred             E-EeCCeEEEEEcCCce-eeeccccCCCCCCeeEEEECCCCcEEEEEEc------CCcEEEEEcCCcceeeeeCCCcccC
Q 001224          975 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus       975 ~-~~d~~v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg~v~iwd~~~~~~~~~~~~~~~~~ 1046 (1120)
                      + +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|..      -|.+++||..+.+.+.++...    
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----  456 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----  456 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence            9 899999999998754 4444432223556788999999999999874      478999999999999988722    


Q ss_pred             CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE-ecCCCC
Q 001224         1047 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF-EPLESE 1087 (1120)
Q Consensus      1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW-~~~~~~ 1087 (1120)
                       +     ..++.+.|+| .=+.|..|+.||+++|+ |.....
T Consensus       457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~  491 (641)
T KOG0772|consen  457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI  491 (641)
T ss_pred             -C-----ceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence             1     3345899999 46788899999999975 444443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-26  Score=219.67  Aligned_cols=253  Identities=13%  Similarity=0.256  Sum_probs=212.3

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .....+.-.+.+..++||+.....+++++.||+++|||......                  +...++.|...|.++.|+
T Consensus        52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn  113 (311)
T KOG0277|consen   52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN  113 (311)
T ss_pred             EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence            34455667899999999999888899999999999999543221                  112578899999999999


Q ss_pred             C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224          436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  514 (1120)
Q Consensus       436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  514 (1120)
                      + +++.++++|.|++|++|+...+..++   ++.||...|...+|+|.... +++++|.|+++++||++.......+..|
T Consensus       114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah  189 (311)
T KOG0277|consen  114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH  189 (311)
T ss_pred             cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence            9 67778889999999999999887666   79999999999999998777 8999999999999999865444558999


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      ...|.++.|+.. +...+++|+.|+.|+.||++..+ ++..+.+|+-.|..+.|||...                    .
T Consensus       190 ~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~  248 (311)
T KOG0277|consen  190 NSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------S  248 (311)
T ss_pred             cceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------h
Confidence            999999998754 44799999999999999999754 5667888999999999998876                    5


Q ss_pred             EEEEEeCCCeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEc
Q 001224          594 RFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~  653 (1120)
                      .|++++.|-+++|||...+ ..+.+...|  ..-+..+.|++ ++.++|+.+-|+.+.||+.
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence            6899999999999999854 345555544  44678899988 7889999999999999974

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.2e-26  Score=224.75  Aligned_cols=245  Identities=13%  Similarity=0.219  Sum_probs=200.3

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      |...|..+.|+|....|++++.|++++++|+......                    .....+   ....+|.++.|+|.
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saK--------------------rA~K~~---qd~~~vrsiSfHPs  227 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAK--------------------RAFKVF---QDTEPVRSISFHPS  227 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHH--------------------HHHHHh---hccceeeeEeecCC
Confidence            8899999999999999999999999999998432110                    000001   14678999999999


Q ss_pred             CCEEEEEeC-CcEEEEEcCCCceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-ccc-c
Q 001224          836 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K  909 (1120)
Q Consensus       836 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~-~  909 (1120)
                      |.++++|.| .++++||+.+.++...-   ..|.+.|+++.+++ .+++.++|+.||.|++||--+++|+.++. +|. +
T Consensus       228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs  306 (430)
T KOG0640|consen  228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS  306 (430)
T ss_pred             CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence            999999995 78999999998886553   45788999999999 99999999999999999999999998884 465 4


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCC--CCCCcEEEEccCCcEEEEE--eCCeEEEEE
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVV--HETQLAIFE  985 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~fspdg~~la~~--~d~~v~i~d  985 (1120)
                      +|.+..|..+|+++.+.|.|..+++|.+.++..     ++...|....  ..--+...|.....|++.-  ..+.++-||
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd  381 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD  381 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Confidence            699999999999999999999999999999654     3333332110  0122456777777777773  557899999


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      .+++..+..+.. +|++++..+.-||.+.-+++++.|..+++|--
T Consensus       382 aRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  382 ARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             ccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            999988877765 89999999999999999999999999999963

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.5e-25  Score=217.39  Aligned_cols=247  Identities=17%  Similarity=0.212  Sum_probs=196.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC-ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      ..+.|.+++|||....++++|+-||+|++|+++.. ....                  +....|.++|.+++|+.||..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV   87 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV   87 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence            67899999999977778889999999999999873 3221                  2466799999999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                      ++|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+-+|+|||.|++|+.||++...++.++. -...+.++
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            99999999999999999644    37789999999999887766589999999999999999999998887 45677776


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      ..-    ..+++.+..++.|.+|+++.........  ..        |         -+-.++++++.++....+.|+-+
T Consensus       163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~--~S--------p---------Lk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRI--ES--------P---------LKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             hcc----CceeEEEecCCcEEEEEcCCCcchhhhh--cC--------c---------ccceeeEEEEEecCCceEeeeec
Confidence            542    2478888899999999997654332111  10        1         11145666666666678999999


Q ss_pred             CeEEEEECCCC--ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          602 FSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       602 g~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      |.+-|..+..+  +.-.+++.|..       .-.|++++|+|.-..|++++.||++.+||-..
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            99999999876  44445555542       23578899999999999999999999999643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.7e-25  Score=253.23  Aligned_cols=287  Identities=18%  Similarity=0.276  Sum_probs=238.3

Q ss_pred             CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      .|...+.+..|.  +.++++++.|++|++||..++..+..  .+.||.+.|++++|..-+.  ++++|+.|.+++|||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            466789999998  77899999999999999999886652  3889999999999987455  79999999999999999


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      +|.|..++.+|.+.|.++...+    .++++|+.|.+|++|++.++..+..+.+|...|.++...               
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---------------  340 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---------------  340 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence            9999999999999999887532    578889999999999999888888888788877777665               


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                              +.++++|+.|++|++||+.+++++..+.+|.+  .|.++.+.+. ..+++|+.|++|++||+.+..+++..+
T Consensus       341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence                    24799999999999999999999999998654  8999988766 899999999999999998774344333


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224          664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  743 (1120)
                      .+|.                                                                            
T Consensus       410 ~~h~----------------------------------------------------------------------------  413 (537)
T KOG0274|consen  410 QGHT----------------------------------------------------------------------------  413 (537)
T ss_pred             cCCc----------------------------------------------------------------------------
Confidence            3222                                                                            


Q ss_pred             ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224          744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  823 (1120)
Q Consensus       744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~  823 (1120)
                                                                                                      
T Consensus       414 --------------------------------------------------------------------------------  413 (537)
T KOG0274|consen  414 --------------------------------------------------------------------------------  413 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                       .-+..+.  ..++++++++ |++|++||..++++++++.+ |...|.++++.   ...+++++.||.+++||+.++++.
T Consensus       414 -~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  414 -SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             -ccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence             1111111  2456788887 99999999999999999998 67888888886   347888899999999999999988


Q ss_pred             Eeecccc
Q 001224          902 SKLKGHS  908 (1120)
Q Consensus       902 ~~l~~h~  908 (1120)
                      ..+-.+.
T Consensus       488 ~~l~~~~  494 (537)
T KOG0274|consen  488 RTLLSTD  494 (537)
T ss_pred             hhhhhcc
Confidence            8774444

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=5.5e-25  Score=249.49  Aligned_cols=298  Identities=14%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-C
Q 001224          757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N  835 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d  835 (1120)
                      -..|.....++++..++++..+.....|+...+.            ..++....|+.......-.+|.+.|.+++|+| +
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence            3455566677787778888888888888753211            12334444543322111234999999999999 8


Q ss_pred             CCEEEEEe-CCcEEEEEcCCC-------ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224          836 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                      +++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|.++.+|++|+.|+.|+|||+.+++.+..+.+|
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            89999999 999999999764       3466788999999999999944579999999999999999999999999999


Q ss_pred             ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E----eCCeEE
Q 001224          908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA  982 (1120)
Q Consensus       908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~----~d~~v~  982 (1120)
                      ...|.+++|+|+|.+|++++.|++|+|||+.+++.     +....+|..  ..+..+.|.+++..+++ +    .|+.|+
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            99999999999999999999999999999998653     333344432  23356788998887776 3    368999


Q ss_pred             EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224          983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus       983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
                      +||+++...........+...+....|++|+.+|++|+ .|+.|++||+.+++++.......       .....  .++|
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-------~~~~~--g~~~  311 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-------VEPHK--GLCM  311 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-------CCCCc--ceEe
Confidence            99998764322221112345667778999999999887 59999999999998876554111       11133  5777


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1062 HPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1062 ~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .|.   .-+-...-.-.+++.+..
T Consensus       312 ~pk---~~~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        312 MPK---WSLDTRKCEIARFYALTY  332 (493)
T ss_pred             ccc---ccccccceeeeEEEEecC
Confidence            772   222222233445666543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.4e-25  Score=215.74  Aligned_cols=246  Identities=15%  Similarity=0.256  Sum_probs=207.6

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecce
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE  899 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~  899 (1120)
                      ....|.++.|+++|.++++++ |.++++||..+++.++++..+.-.+..+.|.. ....+..++.  |.+||..++.+.+
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence            467899999999999999988 78999999999999999998888899999988 5555555655  8899999999999


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  979 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~  979 (1120)
                      .++.|.||...|++|+.+|-+..++|++.|++|++||++..+++....+.          .-..++|.|+|-++|++.++
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~----------~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS----------GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC----------CCcceeECCCCcEEEEecCC
Confidence            99999999999999999999999999999999999999975543321111          22568999999999997444


Q ss_pred             -eEEEEEcCCc--eeeeccccC-CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCcc
Q 001224          980 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1055 (1120)
Q Consensus       980 -~v~i~d~~~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 1055 (1120)
                       .|++||++.-  ....++... +-..+.+.|.|||||++++.+...+.+++.|.-+|..+..+.       ++....-.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~  234 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL  234 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence             9999999864  333444433 446789999999999999999999999999999999888877       33333344


Q ss_pred             ceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1056 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1056 ~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++..+|+| |++++++|+.||+|.+|++.+|.
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCc
Confidence            57899999 79999999999999999999998

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.2e-26  Score=258.96  Aligned_cols=280  Identities=20%  Similarity=0.309  Sum_probs=223.8

Q ss_pred             CCCCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      ++..|.++..+|||.. +|||+  .||.++||+.+.--.    ....++..   .+........|.+.|+|+.|||||+|
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            4567999999999995 99999  899999999754110    00111111   22223346789999999999999999


Q ss_pred             EEEEECCCeEEEEEccC----------C-----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          441 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      ||+|++|+.|.||....          |     +..+....+.+|...|..++|+|++.  ++++++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999872          0     11234567999999999999999999  8999999999999999999


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC------CCceeEEEEcCCCC-------
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT-------  572 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~-------  572 (1120)
                      +.+.++.+|.+.|..+.|.  +-|+|+++-+.|++|++|++.+-+....+..+      ...+..+.|+|||.       
T Consensus       162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            9999999999999999985  55689999999999999997775555444433      23567899999999       


Q ss_pred             -------------------eEEecccccceeEEEEcCC-------------CC----EEEEEeCCCeEEEEECCCCceeE
Q 001224          573 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT  616 (1120)
Q Consensus       573 -------------------~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~  616 (1120)
                                         ..+.||+. ++.++.|+|.             .+    .+++|+.|++|.||.....+++.
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence                               33456666 8889999872             11    56779999999999998887776


Q ss_pred             EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          617 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       617 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ....-. ...|.+++|+|||..|++++.||+|.++.....
T Consensus       319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            554222 236999999999999999999999999988654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=9.4e-26  Score=233.45  Aligned_cols=223  Identities=20%  Similarity=0.286  Sum_probs=164.5

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      +.+|+..|.++++.|.|-+|++|+-|.+|++||...-.. .+.+..+. .....|.++.|++.|..  |++.+.....+|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~--iLvvsg~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ--ILVVSGSAQAKL  240 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe--EEEEecCcceeE
Confidence            778999999999999999999999999999999975422 11122222 23347999999999996  444444568899


Q ss_pred             EECCCCceeEEe-------------eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEE
Q 001224          500 WDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  566 (1120)
Q Consensus       500 wd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  566 (1120)
                      +| +.|..+..+             +||...+++.||+|... ..+++++.||++|+||+...+.....-.+.       
T Consensus       241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-------  311 (641)
T KOG0772|consen  241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-------  311 (641)
T ss_pred             Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeec-------
Confidence            99 666554333             58999999999998765 678999999999999998755332211110       


Q ss_pred             EcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224          567 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       567 ~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                              ..+...-+++.++|+++++.+++|+.||.|.+|+......   ...-+.|.....|+|++||+||++|++-+
T Consensus       312 --------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  312 --------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             --------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence                    0111122566677778888999999999999999754321   22223454445899999999999999999


Q ss_pred             CCCcEEEEEccCcchhhhhc
Q 001224          644 NDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       644 ~dg~i~iwd~~~~~~~~~~~  663 (1120)
                      .|+++++||+++..+++...
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             CCCceeeeeccccccchhhh
Confidence            99999999998775544433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=6.5e-27  Score=236.07  Aligned_cols=286  Identities=19%  Similarity=0.317  Sum_probs=233.7

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.+.|+++.|.++++  .+++++.|+.+++|
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW  246 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence            477899999999999999999999999999999999877 334457888889999999999999  69999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ++..++...++.||++.|+++.|....  ..+++|+.|.+|+.||+....+..+... ...+..++.+            
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------  311 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------  311 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence            999999999999999999999885544  3499999999999999987555443221 1222222222            


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                 ...+++|-.|++|++||.++..+......++   .|+++..+++|..|.+.+.|.++.+.|+++. ...
T Consensus       312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~  376 (459)
T KOG0288|consen  312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR  376 (459)
T ss_pred             -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence                       1247778899999999999999999988765   4999999999999999999999999998765 111


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      .                                                                               
T Consensus       377 ~-------------------------------------------------------------------------------  377 (459)
T KOG0288|consen  377 Q-------------------------------------------------------------------------------  377 (459)
T ss_pred             E-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                             .|+..|..                                                 
T Consensus       378 -----------------------~~sA~g~k-------------------------------------------------  385 (459)
T KOG0288|consen  378 -----------------------TFSAEGFK-------------------------------------------------  385 (459)
T ss_pred             -----------------------Eeeccccc-------------------------------------------------
Confidence                                   11111100                                                 


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                        .....+.+.|||++.|+++|+ ||.|+||++.++++...+.....  .|++++|+| .|..|++++.++.+.+|
T Consensus       386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence              122367899999999999999 99999999999999888765444  599999999 89999999999999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.9e-24  Score=212.43  Aligned_cols=289  Identities=14%  Similarity=0.187  Sum_probs=227.1

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....|.++.|+++|..+++++.|..+++||...                      |..... +..  +...+..++|...
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~----------------------g~~~~t-i~s--kkyG~~~~~Fth~   67 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS----------------------GKQVKT-INS--KKYGVDLACFTHH   67 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCC----------------------CceeeE-eec--ccccccEEEEecC
Confidence            457899999999999999999999999998743                      222211 111  4556788888877


Q ss_pred             CCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224          836 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  912 (1120)
                      ...++.++   |.+||..++.+.+.++.|.+|...|++++.+| .+..+++++.|++|++||++..++...+.....+  
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--  144 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--  144 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence            77766665   78899999999999999999999999999999 6789999999999999999988777666544443  


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  991 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~  991 (1120)
                      .++|.|.|-++|.+.....|++||++.-.+..........+   .....+.+.|||||++++.+ ..+.+++.|.-+|..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            47999999999999888899999999865433333333322   22477999999999999885 778899999999998


Q ss_pred             eeccccCCCCC-CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224          992 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus       992 ~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
                      ...+....... --.+.+|+||++++++|+.||+|.+|++++|..+..+...    .   ...+.  .+.|.|   .+..
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~---~~~~~--~~~fnP---~~~m  289 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----N---GGPVS--CVRFNP---RYAM  289 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----C---CCCcc--ccccCC---ceee
Confidence            88877433222 2267899999999999999999999999999999988822    1   22233  567887   4555


Q ss_pred             EEeCCCcEEEEecCCCC
Q 001224         1071 LGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1071 s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .++.+..+.+|-+...+
T Consensus       290 f~sa~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  290 FVSASSNLVFWLPDEDA  306 (311)
T ss_pred             eeecCceEEEEeccccc
Confidence            55667889999988765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.4e-25  Score=215.02  Aligned_cols=307  Identities=16%  Similarity=0.237  Sum_probs=224.5

Q ss_pred             EEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccc
Q 001224          617 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG  696 (1120)
Q Consensus       617 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1120)
                      .+++|  ...|++++|+.||++|++.+.|++|++|++++-..     +.|...                           
T Consensus        81 ~LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~---------------------------  126 (420)
T KOG2096|consen   81 VLKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI---------------------------  126 (420)
T ss_pred             hhhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh---------------------------
Confidence            34444  45899999999999999999999999999876311     111100                           


Q ss_pred             cccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec
Q 001224          697 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  776 (1120)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  776 (1120)
                                                                         ....    ..+..+.+.|+||-+.++...
T Consensus       127 ---------------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~  151 (420)
T KOG2096|consen  127 ---------------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSV  151 (420)
T ss_pred             ---------------------------------------------------hccc----cCCCceEEEECCCcceEEEEE
Confidence                                                               0000    113456789999987666554


Q ss_pred             c-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC
Q 001224          777 S-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  854 (1120)
Q Consensus       777 ~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~  854 (1120)
                      . ...+++|.+...+-   |...-  ...-||...       + ...|.-.+..+-...++++|++++ |..|.+|+++ 
T Consensus       152 ~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~-------f-~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-  217 (420)
T KOG2096|consen  152 KRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE-------F-ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-  217 (420)
T ss_pred             ccCCEEEEEEeeeccc---CCCCc--ccccccccc-------c-chhcccceEEEeecCCceEEEEecCCCcEEEEecC-
Confidence            4 56889988743211   11100  001111000       0 012666777788888999999999 8899999998 


Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---c-----eeeEeecccccceEEEEEccCCCEEEEE
Q 001224          855 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSS  926 (1120)
Q Consensus       855 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~  926 (1120)
                      |+.+..+......-...+.|| +|++||+++-.-.|+||.+--   |     ..+..|.||.+.|..++||++...++|+
T Consensus       218 Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  218 GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            888888887777778899999 999999999888999999752   2     2345689999999999999999999999


Q ss_pred             eCCCCEEEEECCCccccc--ceeeeccCC-CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCC
Q 001224          927 GADSQLCVWSSDGWEKQK--NRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP 1003 (1120)
Q Consensus       927 s~Dg~v~iWd~~~~~~~~--~~~~~~~~~-~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~ 1003 (1120)
                      +.||+++|||++-.-...  ...++.... .....+....+.++|.|+.||++....+++|..++++....+. +.|...
T Consensus       297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~  375 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTT  375 (420)
T ss_pred             ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCc
Confidence            999999999987532222  112222210 0011134468999999999999999999999999998887776 478999


Q ss_pred             eeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224         1004 ITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus      1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      |++|+|++||+++++++ |..++++.
T Consensus       376 Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  376 ISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eeeEEecCCCcEEeeec-ceeeeeec
Confidence            99999999999999987 78888876

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=9.2e-25  Score=247.69  Aligned_cols=263  Identities=13%  Similarity=0.124  Sum_probs=197.8

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  441 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l  441 (1120)
                      +-..|+....++|+.. +++++.+.....|+...+..+.      +.-..+..+....++.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4567778888899774 6777777888889876654321      11111111112235789999999999999 89999


Q ss_pred             EEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          442 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      |+|+.|++|+|||+.++..    ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234468899999999999998744 7999999999999999999999999999999


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      |.+++|++  ++.+|++++.|+.|++||+++......+..|....                    ...+.|.+++..+++
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT  228 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence            99999965  56799999999999999999877665555554321                    122334444456666


Q ss_pred             Ee----CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224          598 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  656 (1120)
Q Consensus       598 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  656 (1120)
                      ++    .|+.|++||+++.. .+.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            44    47999999998754 33333322 223455667899999999887 5999999999877

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=211.88  Aligned_cols=317  Identities=15%  Similarity=0.196  Sum_probs=212.0

Q ss_pred             ccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee--cccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          420 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       420 ~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      ..|++|.+.|++++||.||++||+++.|++|+||+++.-... ....+  .-.-+--+.++|+||-+- +++++-...++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence            369999999999999999999999999999999999863211 11111  111235678999999886 55566666678


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      ++|-+...+. ..+..|.-.+..+.|..                               .|.-.+..+            
T Consensus       158 ~vyk~~K~~d-G~~~~~~v~~D~~~f~~-------------------------------kh~v~~i~i------------  193 (420)
T KOG2096|consen  158 CVYKLVKKTD-GSGSHHFVHIDNLEFER-------------------------------KHQVDIINI------------  193 (420)
T ss_pred             EEEEeeeccc-CCCCcccccccccccch-------------------------------hcccceEEE------------
Confidence            8886542221 00110111111111100                               011111111            


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                               -...++.++++++.|..|.+|+++ |+.+..+.....  .-+..+.||+|+++++++..--|++|.+--++
T Consensus       194 ---------GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  194 ---------GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             ---------eecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence                     112223478899999999999997 888888764432  45678999999999999999999999763210


Q ss_pred             hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224          658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  737 (1120)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  737 (1120)
                            .+...                                                             ...+++.+
T Consensus       262 ------dG~fq-------------------------------------------------------------ev~rvf~L  274 (420)
T KOG2096|consen  262 ------DGTFQ-------------------------------------------------------------EVKRVFSL  274 (420)
T ss_pred             ------Ccchh-------------------------------------------------------------hhhhhhee
Confidence                  00000                                                             11122332


Q ss_pred             ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc-ccCCCCccccccCceeecCCCCCcccc
Q 001224          738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                      .+|...|..++|+++.+.+++.+.||.+++||++-. ....+.+.+..          |.   .
T Consensus       275 ----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~---~  325 (420)
T KOG2096|consen  275 ----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS---A  325 (420)
T ss_pred             ----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC---c
Confidence                            349999999999999999999999999999998532 11112222211          11   0


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeee-cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      .+..  .......++++|.|+.||......++++..++++..-++ ..|...|.+++|++ +|+++|+++ |..++++.
T Consensus       326 pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  326 PLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             chhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence            1111  233344899999999999998899999999988776665 45888999999999 999999886 77888876

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.9e-26  Score=241.27  Aligned_cols=247  Identities=20%  Similarity=0.274  Sum_probs=203.3

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      ++..++.+..+|.+|+.||.|++|++.......            +.++ ...+..|.+.|+.++...+|+.|+++|.|-
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDt   95 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPY-IASMEHHSDWVNDIILCGNGKTLISASSDT   95 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCc------------ccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence            445554443359999999999999986543321            1111 124778999999999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecccccCeEEEEE-cCCCCceEEEEecCCCcEEEEECCCCc--eeEE--------ee-cccc
Q 001224          449 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI--------FE-GHEA  516 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~--------~~-~h~~  516 (1120)
                      +|++|+...+. .....+++.|.+.|.|++. .++..  ++|+||-|+.|.+||+.+|.  .+.+        +. |+..
T Consensus        96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen   96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            99999998774 2234478899999999999 66666  79999999999999999872  3322        23 7888


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|++++.  .++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+                     .++
T Consensus       173 siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------------~~l  229 (735)
T KOG0308|consen  173 SIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------------RLL  229 (735)
T ss_pred             ceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------------eEe
Confidence            9999986  45567999999999999999999999988888888777777666665                     799


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.||+|++||+...+++.++..|..  .|.++..+|+-..+++|+.||.|..-|+++.
T Consensus       230 s~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  230 SASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            999999999999999999999987765  6999999999999999999999999988875

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.5e-25  Score=215.09  Aligned_cols=245  Identities=16%  Similarity=0.322  Sum_probs=204.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      |++.|+.++-..... ++.+++.|.+-+||.+++|.++..                   +.||.+.|+++.|++.+.+++
T Consensus       147 HkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~~L~l  206 (481)
T KOG0300|consen  147 HKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSGLLLL  206 (481)
T ss_pred             cccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEeccccceEE
Confidence            445555544444444 799999999999999999999984                   889999999999999999999


Q ss_pred             EEECCCeEEEEEcc------C--------C-----------------------ceeeeeeeecccccCeEEEEEcCCCCc
Q 001224          443 VAYSRHIVQIYSYH------G--------G-----------------------DEVRQHLEIDAHVGGVNDIAFSHPNKQ  485 (1120)
Q Consensus       443 s~~~dg~v~iwd~~------~--------~-----------------------~~~~~~~~l~~h~~~V~~v~~s~d~~~  485 (1120)
                      +++.|++..||...      .        +                       ..-.+...|.+|.+.|.+..|...|++
T Consensus       207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce
Confidence            99999999999721      1        0                       001134568899999999999999994


Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeE
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTT  564 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~  564 (1120)
                        +++++.|.+..+||+++|+.+..+.||....+.++-+|..  .++++.+.|.+.++||.+.. .....|.+|...|++
T Consensus       287 --~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  287 --MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             --eeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence              9999999999999999999999999999999998876654  78999999999999999853 234567888888888


Q ss_pred             EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224          565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       565 ~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                      ..|..+.+                      +++|+.|.+|++||+++.+ ++.++....   .++.++.+..+..++.--
T Consensus       363 ~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPh  417 (481)
T KOG0300|consen  363 VVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPH  417 (481)
T ss_pred             EEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEecc
Confidence            88887765                      9999999999999998754 566665443   588899999999999999


Q ss_pred             CCCcEEEEEccCc
Q 001224          644 NDNGIKILATSDG  656 (1120)
Q Consensus       644 ~dg~i~iwd~~~~  656 (1120)
                      ++..|++||++..
T Consensus       418 DNRqvRlfDlnG~  430 (481)
T KOG0300|consen  418 DNRQVRLFDLNGN  430 (481)
T ss_pred             CCceEEEEecCCC
Confidence            9999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.2e-25  Score=238.43  Aligned_cols=273  Identities=19%  Similarity=0.270  Sum_probs=228.3

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      -+.|+..+  +||+|. ...|++|+..+++....                   ..-+...|+++.|+++|++||+|..+|
T Consensus       182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             HhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence            46788555  466665 35899999999985542                   222378999999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE-eeccccCeEEEeeccC
Q 001224          449 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK  526 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~  526 (1120)
                      .|.|||..+.+.++   .+.+ |...|.+++|+  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+  
T Consensus       240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws--  310 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS--  310 (484)
T ss_pred             eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence            99999999987666   6777 99999999998  34  699999999999999998877655 88999999999985  


Q ss_pred             CCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--CCCeE
Q 001224          527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI  604 (1120)
Q Consensus       527 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i  604 (1120)
                      .++.++++|+.|+.+.+||.....+...+..|...|..++|+|-..                    ..||+|+  .|+.|
T Consensus       311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI  370 (484)
T ss_pred             CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence            4558999999999999999998899999999999999999999765                    5688854  79999


Q ss_pred             EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcc
Q 001224          605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  682 (1120)
Q Consensus       605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1120)
                      ++||..++..+..+....   .|.++.|++..+-|+++  ..++.|.||+..+. ..+..+                   
T Consensus       371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l-------------------  427 (484)
T KOG0305|consen  371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL-------------------  427 (484)
T ss_pred             EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence            999999999998887544   59999999988777664  45678888887653 111111                   


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224          683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  762 (1120)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  762 (1120)
                                                                                             .+|..+|..
T Consensus       428 -----------------------------------------------------------------------~gH~~RVl~  436 (484)
T KOG0305|consen  428 -----------------------------------------------------------------------LGHTSRVLY  436 (484)
T ss_pred             -----------------------------------------------------------------------cCCcceeEE
Confidence                                                                                   348899999


Q ss_pred             EEEcCCCceEEEeccCceEEEeee
Q 001224          763 LIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       763 l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      ++++|||..+++++.|.++++|++
T Consensus       437 la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  437 LALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEECCCCCEEEEecccCcEEeccc
Confidence            999999999999999999999986

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-24  Score=211.88  Aligned_cols=240  Identities=21%  Similarity=0.233  Sum_probs=202.6

Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEeec
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~  897 (1120)
                      ..|...++++|+  ++.++|+|+ |.+|+|||+.....+..+..|.+.|+++.|.+ ...  .|++|++||.|.+|+..+
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            349999999998  688999999 99999999999999999999999999999998 554  889999999999999999


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  977 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~  977 (1120)
                      ++++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-+|+......+.    +     ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----~-----~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----N-----KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----C-----cceeeEEcCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999997753322222    1     235699999999999998


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
                      ...|-+|.+.+......+..   ...+.++.|- ++.+|++|+.|+.|.+||.+++...+.+.       +|... |-  
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--  253 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--  253 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--
Confidence            99999999998888777653   3567777775 56788889999999999999987777666       33333 44  


Q ss_pred             EEE-ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1058 VIA-AHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1058 ~i~-~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      ++. |.-.++.+|+|+|+||.|+|||+...
T Consensus       254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  254 DIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            344 33226789999999999999999876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=3.2e-25  Score=228.04  Aligned_cols=269  Identities=14%  Similarity=0.231  Sum_probs=220.8

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ++...+.|.+.|+.+.+-|....++|+++..+.|.|||..+......         ..+...+...|.||...=+.++|+
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---------~~~~~~Pdl~L~gH~~eg~glsWn  186 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK---------ASGECRPDLRLKGHEKEGYGLSWN  186 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc---------ccccCCCceEEEeecccccccccc
Confidence            45667889999999999999999999999999999999976443321         001122333588999988999999


Q ss_pred             C-CCCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC--CCcee
Q 001224          436 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ  508 (1120)
Q Consensus       436 p-dg~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~--~~~~~  508 (1120)
                      + ..-+|++|+.|++|++||+.....    +.....+.+|.+.|..++|.+-... +++++++|+.+.|||++  +.++.
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence            9 566899999999999999985433    5566678999999999999998887 79999999999999999  56667


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      ....+|.++|.|++|+|.. +..|++|+.|++|.+||+++.. +..++..|...|..+.|+|...               
T Consensus       266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------  329 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------  329 (422)
T ss_pred             ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence            7888999999999998765 4799999999999999999864 5668889999999999999876               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcee------------EEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEcc
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLL------------TSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS  654 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~  654 (1120)
                           ..|++++.|+.+.+||+..-...            ..|...+|...|..+.|+|+.. .+++.+.|+.+.||.+.
T Consensus       330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 57899999999999998642222            2244456677899999999765 46677889999999876


Q ss_pred             C
Q 001224          655 D  655 (1120)
Q Consensus       655 ~  655 (1120)
                      .
T Consensus       405 ~  405 (422)
T KOG0264|consen  405 E  405 (422)
T ss_pred             c
Confidence            4

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.5e-25  Score=238.27  Aligned_cols=259  Identities=16%  Similarity=0.264  Sum_probs=214.5

Q ss_pred             CCCCCCCCcceeeecc-CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC-
Q 001224          347 FSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-  424 (1120)
Q Consensus       347 ~~~~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  424 (1120)
                      +|-.+.....+..+.. +...|+++.|+++|.+ ||+|..+|.|.|||..+.+.+..                   +.+ 
T Consensus       199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~  258 (484)
T KOG0305|consen  199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS  258 (484)
T ss_pred             EEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence            3444444455555554 3899999999999995 99999999999999998877653                   455 


Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      |...|.+++|+  +..+.+|+.|+.|..+|+...+....  .+.+|...|..+.|++|+.  ++++|+.|+.+.|||...
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~  332 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS  332 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence            99999999998  77899999999999999998775543  4889999999999999999  799999999999999988


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEe--cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                      ..++..+..|.+.|.+++|+|-.. ..|++|+  .|++|++||..++..+.... .+..|.++.|++..           
T Consensus       333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~-----------  399 (484)
T KOG0305|consen  333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKY-----------  399 (484)
T ss_pred             ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCC-----------
Confidence            999999999999999999998766 4888876  49999999998765544332 23445555555554           


Q ss_pred             eeEEEEcCCCCEEEE--EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          583 LGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                +.|++  |..++.|.||++.+.+.+..+.+|..  .|..++++|||..+++|+.|.++++|++-+.
T Consensus       400 ----------kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  400 ----------KELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ----------CEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                      45555  45788999999999999999887755  7999999999999999999999999987654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=240.04  Aligned_cols=366  Identities=16%  Similarity=0.192  Sum_probs=267.4

Q ss_pred             EEEEcC-CCCeEEEEECCCeEEEEEccCCcee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-
Q 001224          431 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-  505 (1120)
Q Consensus       431 ~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-  505 (1120)
                      ++..++ .++||.+||.||.|++|++......   .....++.|.+.|+.++...+++  .|+++|.|.+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            444544 7788999999999999998754321   12346889999999999999998  5999999999999999887 


Q ss_pred             -ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          506 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       506 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                       -|+.++..|.+.|.|++.- ..+...+++||.|+.|.+||+.++.....                              
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~------------------------------  155 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV------------------------------  155 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh------------------------------
Confidence             6888999999999999973 44557999999999999999986432100                              


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                                   ++. ..+..-++..          +....|.+++..+.|..+++|+.++.+++||.++..+.++   
T Consensus       156 -------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---  208 (735)
T KOG0308|consen  156 -------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---  208 (735)
T ss_pred             -------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee---
Confidence                         000 0000001100          2344688899999999999999999999999876622111   


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224          665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  744 (1120)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  744 (1120)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (735)
T KOG0308|consen  209 --------------------------------------------------------------------------------  208 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCC
Q 001224          745 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  824 (1120)
Q Consensus       745 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~  824 (1120)
                                                                                               +.  +|.
T Consensus       209 -------------------------------------------------------------------------Lr--GHT  213 (735)
T KOG0308|consen  209 -------------------------------------------------------------------------LR--GHT  213 (735)
T ss_pred             -------------------------------------------------------------------------ee--ccc
Confidence                                                                                     11  277


Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ..|.++..++||..+++++ ||+|++||+...+++.++..|...|.++..+| +-..+.+|+.||.|+.-|+.+......
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl  292 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL  292 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence            7788888888888888887 89999999999999999999999999999999 899999999999999999988433333


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  983 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i  983 (1120)
                      +-....+|..+..+.+.+-+-+++.|+.|+-|..+.                       ...+++.|.+...+.+....+
T Consensus       293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~  349 (735)
T KOG0308|consen  293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHS  349 (735)
T ss_pred             eecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCcccccCCCcc
Confidence            333456677777775444456677899999997654                       123444555444444444444


Q ss_pred             EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224          984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
                      ++... ....  ..+| ..+|...++-.|.+++++-...|.+.+||+-..+.+..+
T Consensus       350 ~~~~~-tp~~--vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~  401 (735)
T KOG0308|consen  350 CDLTN-TPDS--VIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF  401 (735)
T ss_pred             ccccC-CCce--eccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence            44322 1111  1112 456777778889999999999999999999777665443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1e-25  Score=223.47  Aligned_cols=285  Identities=16%  Similarity=0.220  Sum_probs=217.8

Q ss_pred             ccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          422 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      |.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.   ++..|.+.|..+++.. +   .++++|+|++|+.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW  134 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence            68999999999999977 889999999999999999977666   7899999999999987 3   48999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      -+.. ..++++.+. ..+..+.-+.  .+..++|+|.  .|.+||.....++..+.-....+.++.|+|...        
T Consensus       135 k~~~-~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------  200 (433)
T KOG0268|consen  135 KIDG-PPLHTILGK-SVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------  200 (433)
T ss_pred             eccC-Ccceeeecc-cccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence            9665 466776542 3444554322  2357788774  588899987777776666666666666666554        


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                  ..|+++++|+.|.+||++++.++..+.....   -+.++|+|.+-.+++|+.|..++.+|++.....+
T Consensus       201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence                        4567778999999999999998887764433   5679999988889999999999999986542211


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ...                                                                             
T Consensus       266 ~v~-----------------------------------------------------------------------------  268 (433)
T KOG0268|consen  266 NVH-----------------------------------------------------------------------------  268 (433)
T ss_pred             hhh-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (433)
T KOG0268|consen  269 --------------------------------------------------------------------------------  268 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      .+|.+.|.++.|||.|+-+++|+ |.+|+||....+.....+. .-...|.|+.||. |.+++++|++|+.|++|.....
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence            01666677777777777788887 8888888877654332221 1234699999999 9999999999999999987654


Q ss_pred             ee
Q 001224          899 EV  900 (1120)
Q Consensus       899 ~~  900 (1120)
                      +.
T Consensus       348 ek  349 (433)
T KOG0268|consen  348 EK  349 (433)
T ss_pred             hh
Confidence            43

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.7e-24  Score=240.95  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=181.4

Q ss_pred             EeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCce-
Q 001224          383 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE-  460 (1120)
Q Consensus       383 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~-  460 (1120)
                      |+.++.|.+|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            5567788888876544333                   47899999999999996 89999999999999999986432 


Q ss_pred             e----eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe
Q 001224          461 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  536 (1120)
Q Consensus       461 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  536 (1120)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++  +|.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence            1    122357899999999999999885 56899999999999999999888776 667899999865  567999999


Q ss_pred             cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC----eEEEEECCC-
Q 001224          537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS-  611 (1120)
Q Consensus       537 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-  611 (1120)
                      .|+.|++||++++.....+..|.+.+....                ++...+++++.++++++.|+    .|++||+++ 
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            999999999998877777766655433222                22234556777899887664    799999985 


Q ss_pred             CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          612 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       612 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++++..+..+.....+......++|.++++|..|+.|++|++..+
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            566766655544333333444557999999999999999999765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=1.2e-24  Score=233.84  Aligned_cols=241  Identities=17%  Similarity=0.301  Sum_probs=205.0

Q ss_pred             eeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE-EEE
Q 001224          357 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW  434 (1120)
Q Consensus       357 ~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~  434 (1120)
                      +.+.+ +|++.|..+++.+..  .+++|+.||++++|+-..++-+..                 +.+.+|.+-|.+ +++
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y   66 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY   66 (745)
T ss_pred             eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence            33444 599999999988877  489999999999999876654432                 136678888888 888


Q ss_pred             cC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224          435 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       435 sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      -+ ++-+|++|+.|++|.+|...+...+.   .|.||...|.++....++.   +++||.|.+++||-  .+++...+.+
T Consensus        67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g  138 (745)
T KOG0301|consen   67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG  138 (745)
T ss_pred             ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence            86 66679999999999999999987554   8999999999999888876   89999999999995  5677788999


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      |+..|+++...+..   .++||+.|++|++|.-  ++...++.+|...|..+++-+++.                     
T Consensus       139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---------------------  192 (745)
T KOG0301|consen  139 HTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---------------------  192 (745)
T ss_pred             cchheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence            99999999875543   8999999999999965  677888999999999999988875                     


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                       +++++.||.|+.|++ +|+++..+.+|  ...+.+++...++..+++++.|+++++|+..
T Consensus       193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence             999999999999999 78888877655  5579999988899999999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=3.5e-24  Score=217.60  Aligned_cols=240  Identities=19%  Similarity=0.315  Sum_probs=197.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      |...|..+.|+++...+++++.|..|+||......                   ....    .  ..|..+|+.+..+|.
T Consensus       260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-------------------~~~~----~--~~h~~~V~~ls~h~t  314 (506)
T KOG0289|consen  260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-------------------EPTS----S--RPHEEPVTGLSLHPT  314 (506)
T ss_pred             cceEEEEEEeccchhheeecCCcceEEeecccccc-------------------Cccc----c--ccccccceeeeeccC
Confidence            67788999999999999999999999999863211                   0000    1  129999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  912 (1120)
                      |.||++++ |++..+.|+.++..+.....  ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.
T Consensus       315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence            99999999 89999999999988766553  234589999999 999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--c
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--L  989 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~--~  989 (1120)
                      +++|+.+|-|||+++.|+.|++||++.-+....  +.....     ..+.++.|.+.|.+|+++ .+=.|++++-.+  .
T Consensus       394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W  466 (506)
T KOG0289|consen  394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW  466 (506)
T ss_pred             EEEeccCceEEEEEecCCeEEEEEehhhcccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence            999999999999999999999999998553322  222221     258999999999999995 555666666443  3


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      .++..+.  .|.+..+.+.|..+.+++++++.|..++++.+
T Consensus       467 ~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  467 TEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence            4444443  67889999999999999999999999888764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.3e-24  Score=208.07  Aligned_cols=207  Identities=18%  Similarity=0.216  Sum_probs=161.8

Q ss_pred             ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      -....+.|.+|+||| ...+++.+|.|++||+|+++....+.. +....|.++|.+++|+.||.  .+++|+.|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            345678999999999 666677899999999999987432322 35667999999999999998  69999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |+.++ .+..+..|.++|..+.|....+-..|++|+-|++|++||.+...++.++..++. +.+                
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa----------------  161 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYA----------------  161 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eee----------------
Confidence            99999 456677799999999998777667899999999999999998777776655432 111                


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                             .+-....++++..++.|.+|+++++..........-.-.++|++..+|....+.|+-+|.+.+..+..+
T Consensus       162 -------~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  162 -------ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             -------hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence                   111123578888999999999987654332221112235789999998888899999999998887664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.2e-24  Score=221.34  Aligned_cols=293  Identities=16%  Similarity=0.197  Sum_probs=223.6

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeee--------------eee-cccccCeEEEEEcCCCCc
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ  485 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~  485 (1120)
                      ....|.-+|.+++++||++++.+++.+++|.=|++.+++..+.+              ..- .+|...|.+++.|+||+ 
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            46789999999999999999999999999999999988743111              011 37889999999999999 


Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  565 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  565 (1120)
                       ||++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-...  ..+++++.|+.|++|+++....+.++-+|...|.++
T Consensus       216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence             89999999999999999999999999999999999996544  579999999999999999888888888888888877


Q ss_pred             EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224          566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  645 (1120)
Q Consensus       566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  645 (1120)
                      ....-++                     .+-+|+.|+++++|++.... ...+.++.  ..+-|++|-.+ ..+++|+.+
T Consensus       293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~~--~sidcv~~In~-~HfvsGSdn  347 (479)
T KOG0299|consen  293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGGE--GSIDCVAFIND-EHFVSGSDN  347 (479)
T ss_pred             chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCCC--CCeeeEEEecc-cceeeccCC
Confidence            6655554                     34446699999999995433 33343333  35788888754 578899999


Q ss_pred             CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceee
Q 001224          646 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  725 (1120)
Q Consensus       646 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  725 (1120)
                      |.|.+|++.....+...-..|....                                                +.     
T Consensus       348 G~IaLWs~~KKkplf~~~~AHgv~~------------------------------------------------~~-----  374 (479)
T KOG0299|consen  348 GSIALWSLLKKKPLFTSRLAHGVIP------------------------------------------------EL-----  374 (479)
T ss_pred             ceEEEeeecccCceeEeeccccccC------------------------------------------------Cc-----
Confidence            9999999877633222222111100                                                00     


Q ss_pred             ccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224          726 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       726 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                                                +...+...|++++..|...++++++.+|.+++|.+..+                
T Consensus       375 --------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g----------------  412 (479)
T KOG0299|consen  375 --------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG----------------  412 (479)
T ss_pred             --------------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCC----------------
Confidence                                      00113357899999999999999999999999987432                


Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  843 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s  843 (1120)
                            ......+....-.+.|++++|+++|+++++|-
T Consensus       413 ------~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  413 ------LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ------ccccceeeecccccEEEEEEEccCCCEEEEec
Confidence                  11111122223567899999999999888875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=5.4e-24  Score=216.23  Aligned_cols=282  Identities=20%  Similarity=0.279  Sum_probs=230.8

Q ss_pred             cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC
Q 001224          472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  551 (1120)
Q Consensus       472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  551 (1120)
                      ..+.++...+...  .+++|+.|..+.++|..+++.+.+++||...|+.+.+++..  ..+++++.|..|++|.......
T Consensus       220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence            4677888888745  59999999999999999999999999999999999997765  5799999999999999887776


Q ss_pred             ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEE
Q 001224          552 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  631 (1120)
Q Consensus       552 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  631 (1120)
                      ......|..+|+.+...|.|                     .||++++.||...+.|++++..+...........+++.+
T Consensus       296 ~~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ccccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            66666666666655555554                     599999999999999999999988877554445689999


Q ss_pred             EcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001224          632 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  711 (1120)
Q Consensus       632 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1120)
                      |+|||..+.+|..||.+++||+.++. ....                                                 
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------  384 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------  384 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence            99999999999999999999987651 0000                                                 


Q ss_pred             CcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccccc
Q 001224          712 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  791 (1120)
Q Consensus       712 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~  791 (1120)
                                                                                                      
T Consensus       385 --------------------------------------------------------------------------------  384 (506)
T KOG0289|consen  385 --------------------------------------------------------------------------------  384 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeE
Q 001224          792 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT  869 (1120)
Q Consensus       792 ~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~  869 (1120)
                                                ++  +|.++|.+++|+.+|-|+|++. |+.|++||++..+...++.... .++.
T Consensus       385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence                                      11  2778888888888888888888 6779999988777666665332 3699


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEee--cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          870 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       870 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ++.|.+ .|.+|+.++.|=+|++++-.  ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus       437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999999 89999999877555555432  57788899999999999999999999999999999988754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-22  Score=222.77  Aligned_cols=526  Identities=15%  Similarity=0.196  Sum_probs=328.3

Q ss_pred             cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCc-eEEEEecCCCcEEEEE
Q 001224          423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWD  501 (1120)
Q Consensus       423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~s~d~~i~vwd  501 (1120)
                      .|-...-..-.||+|+++++... +..|.||...+|.++.   .+.+|..++..+.+.|.... .++++++.||.|++||
T Consensus        13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            33333444567899999998876 4569999999999887   79999999999999987764 4788999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCC-CceEEE-EEecCCeE-EEEecCCCCCceeeeCCCCceeEEEE-cCCCCeEEec
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQG  577 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~g~~~~~~  577 (1120)
                      ...+..++++..+. ++.++.+.+.. +...++ .+..|..+ .....+..+....+.       -..+ ++.+ .+...
T Consensus        89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~-------~~t~~~~~~-d~~~~  159 (792)
T KOG1963|consen   89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFV-------LATFDSAKG-DFLKE  159 (792)
T ss_pred             CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeE-------eeeccccch-hhhhh
Confidence            99999999987543 33333221100 001111 11111111 000001001000000       0000 0000 00000


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE--ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      +.  .-..+..++.+.+. ....+..+.+|+..++......  ....|...+++.++||+++++++|..||.|.+|.--.
T Consensus       160 ~~--~~~~I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~  236 (792)
T KOG1963|consen  160 HQ--EPKSIVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG  236 (792)
T ss_pred             hc--CCccEEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence            00  02334555555543 4444567889998775511111  1112333478999999999999999999999996321


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      .       .                                                              ..+-+..+|
T Consensus       237 ~-------~--------------------------------------------------------------~~~~t~t~l  247 (792)
T KOG1963|consen  237 S-------S--------------------------------------------------------------DDSETCTLL  247 (792)
T ss_pred             c-------c--------------------------------------------------------------cccccceEE
Confidence            0       0                                                              000111111


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                      ..                  |...|.+++|+++|.+|++||..|.+.+|.+.+                      +.  .
T Consensus       248 HW------------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~--k  285 (792)
T KOG1963|consen  248 HW------------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GK--K  285 (792)
T ss_pred             Ee------------------cccccceeEEecCCceEeecccceEEEEEeecC----------------------CC--c
Confidence            11                  678999999999999999999999999998743                      22  1


Q ss_pred             ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC-----------CCCeEEEEEecCCCcEEEE
Q 001224          816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAI  883 (1120)
Q Consensus       816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~las  883 (1120)
                      ..++.  -...|..+.+|||+.+.+... |+.|.+..+.+.....++.+.           .+-.+.++++| ..+.++.
T Consensus       286 qfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vl  362 (792)
T KOG1963|consen  286 QFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVL  362 (792)
T ss_pred             ccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceee
Confidence            11222  578899999999999888776 999999988766555444332           23367788999 7778888


Q ss_pred             EeCCCcEEEEEeecceeeEeec-----------ccccceEEEEEccCCCEEEEEeC--------CC--CEEEEECCCccc
Q 001224          884 GMDDSSIQIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEK  942 (1120)
Q Consensus       884 g~~dg~v~vwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------Dg--~v~iWd~~~~~~  942 (1120)
                      .+..|.|.+||+.+.+.+..+.           -+.-.|++++.+-.|.+++|+-.        ||  .+++|-.....+
T Consensus       363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k  442 (792)
T KOG1963|consen  363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK  442 (792)
T ss_pred             cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence            8999999999998876665542           13345788888888999998643        33  478998776554


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEc-cCCc-EEEE-EeCCeEEEEEcCCceee--------eccccCCCCCCeeEEEECC
Q 001224          943 QKNRFLQIPTGRTPTAQSDTRVQFH-QDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~i~~~~fs-pdg~-~la~-~~d~~v~i~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~ 1011 (1120)
                      ...........|..   .+...+|. +... ..++ +.||.+++|-....+-+        ......-|..++++++||.
T Consensus       443 t~~L~T~I~~PH~~---~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~  519 (792)
T KOG1963|consen  443 TFILNTKINNPHGN---AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ  519 (792)
T ss_pred             eeEEEEEEecCCCc---eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence            33333333334432   33344443 3222 5555 59999999988432211        1111123688999999999


Q ss_pred             CCcEEEEEEcCCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224         1012 DSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
                      ||..|+++ .|++|.|||..+ .++.+... ....+.++    ..  ..+-.+.  ...+.....+.+.+|++....-.|
T Consensus       520 dGslla~s-~~~~Itiwd~~~~~~l~~~~~-~~~~~~~~----~~--~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  520 DGSLLAVS-FDDTITIWDYDTKNELLCTEG-SRNWPIAE----LL--FTAQTQN--DGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             CCcEEEEe-cCCEEEEecCCChhhhhcccc-ccccchHh----Hh--hhccccc--ccceeeccCceEehHhhhhhheec
Confidence            99877754 689999999999 55555443 22222221    10  1111221  234444567899999999988777


Q ss_pred             C
Q 001224         1091 G 1091 (1120)
Q Consensus      1091 ~ 1091 (1120)
                      .
T Consensus       590 ~  590 (792)
T KOG1963|consen  590 N  590 (792)
T ss_pred             c
Confidence            3

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.1e-25  Score=219.24  Aligned_cols=285  Identities=18%  Similarity=0.297  Sum_probs=217.7

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEe
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  545 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  545 (1120)
                      .|.||.+.|.|++=.|..-. .+++|+.||.|+|||+.+..++.++.+|.+.|..+++..    ..+++++.|++|+.|.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            47899999999999998633 699999999999999999999999999999999999865    4689999999999998


Q ss_pred             cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC
Q 001224          546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  625 (1120)
Q Consensus       546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  625 (1120)
                      ++.. ...++.+                      +..+..+..+..++.++++|+  .|.|||.....++..+...  ..
T Consensus       136 ~~~~-p~~tilg----------------------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG--~D  188 (433)
T KOG0268|consen  136 IDGP-PLHTILG----------------------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG--AD  188 (433)
T ss_pred             ccCC-cceeeec----------------------cccccccccccccccccccCc--eeeecccccCCccceeecC--CC
Confidence            7652 1111111                      112333444444566788775  5899999988888888743  45


Q ss_pred             CcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001224          626 ASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  704 (1120)
Q Consensus       626 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1120)
                      .|.++.|+|- ...|+++..|+.|.+||++.+ .+++.+                                         
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KV-----------------------------------------  226 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKV-----------------------------------------  226 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccC-Ccccee-----------------------------------------
Confidence            7999999995 456777779999999998876 211111                                         


Q ss_pred             cccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEe
Q 001224          705 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  784 (1120)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw  784 (1120)
                                                                                          +           
T Consensus       227 --------------------------------------------------------------------i-----------  227 (433)
T KOG0268|consen  227 --------------------------------------------------------------------I-----------  227 (433)
T ss_pred             --------------------------------------------------------------------e-----------
Confidence                                                                                0           


Q ss_pred             eecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCC-ceeeeec
Q 001224          785 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFM  862 (1120)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~-~~~~~~~  862 (1120)
                                                            .......|+|+|.+-.+++|+ |..++.||+... ..+....
T Consensus       228 --------------------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~  269 (433)
T KOG0268|consen  228 --------------------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK  269 (433)
T ss_pred             --------------------------------------eeccccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence                                                  111223466777666666666 778888887753 3456778


Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  941 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~  941 (1120)
                      +|...|..++||| -|+-+++|+.|.+|+||.+..+....... .-...|.|+.||.|.++++|||.|+.|++|.....+
T Consensus       270 dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  270 DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            8999999999999 89999999999999999988765433221 123469999999999999999999999999987655


Q ss_pred             c
Q 001224          942 K  942 (1120)
Q Consensus       942 ~  942 (1120)
                      +
T Consensus       349 k  349 (433)
T KOG0268|consen  349 K  349 (433)
T ss_pred             h
Confidence            4

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-23  Score=203.63  Aligned_cols=272  Identities=16%  Similarity=0.224  Sum_probs=218.4

Q ss_pred             EEEEecCCCcEEEEECCCC------------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee
Q 001224          487 CVITCGDDKTIKVWDATNG------------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD  554 (1120)
Q Consensus       487 ~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  554 (1120)
                      -++.|+....|.-+++.-.            .++..+..|.+.|++++.+    +.++++|+.|-+|++||+........
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~   78 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGI   78 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchhhhcc
Confidence            3677777777766665421            2355678899999999963    47999999999999999999988888


Q ss_pred             eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          555 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       555 ~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                      +..|.+.++++.|.++-..                   ++|++|++||.|.+|+.....++..++.|.+  .|+.++++|
T Consensus        79 ll~HagsitaL~F~~~~S~-------------------shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--~Vt~lsiHP  137 (362)
T KOG0294|consen   79 LLSHAGSITALKFYPPLSK-------------------SHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--QVTDLSIHP  137 (362)
T ss_pred             eeccccceEEEEecCCcch-------------------hheeeecCCCcEEEEEcCCeEEeeeeccccc--ccceeEecC
Confidence            8888888888888776531                   3699999999999999999999999998876  599999999


Q ss_pred             CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224          635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  714 (1120)
Q Consensus       635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1120)
                      .|++.++.+.|+.+++||+-+|....                                                      
T Consensus       138 S~KLALsVg~D~~lr~WNLV~Gr~a~------------------------------------------------------  163 (362)
T KOG0294|consen  138 SGKLALSVGGDQVLRTWNLVRGRVAF------------------------------------------------------  163 (362)
T ss_pred             CCceEEEEcCCceeeeehhhcCccce------------------------------------------------------
Confidence            99999999999999999986661000                                                      


Q ss_pred             cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224          715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  794 (1120)
Q Consensus       715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  794 (1120)
                                         +-+                                                          
T Consensus       164 -------------------v~~----------------------------------------------------------  166 (362)
T KOG0294|consen  164 -------------------VLN----------------------------------------------------------  166 (362)
T ss_pred             -------------------eec----------------------------------------------------------
Confidence                               000                                                          


Q ss_pred             CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEe
Q 001224          795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH  874 (1120)
Q Consensus       795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s  874 (1120)
                                                  -....+.+.|+|.|.+++.+....|-+|.+.+......+.. ...+.|+.|.
T Consensus       167 ----------------------------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l  217 (362)
T KOG0294|consen  167 ----------------------------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFL  217 (362)
T ss_pred             ----------------------------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeec
Confidence                                        01112237788888888888878899999887766655542 2557788776


Q ss_pred             cCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc--cCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224          875 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGWEKQKN  945 (1120)
Q Consensus       875 p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~iWd~~~~~~~~~  945 (1120)
                        ++..|++|.+|+.|.+||..+..+...+.+|..+|.++.+-  |++.+|+|++.||.|+|||++...+...
T Consensus       218 --~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~  288 (362)
T KOG0294|consen  218 --DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP  288 (362)
T ss_pred             --CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence              67789999999999999999999999999999999999853  6789999999999999999998655433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=4.8e-24  Score=229.23  Aligned_cols=274  Identities=14%  Similarity=0.236  Sum_probs=225.1

Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc-ccCCCCCCCCCccE-EE
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA  831 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~-l~  831 (1120)
                      .+|...|..+++.+.. .+++++.||++++|+-..+                      ..+. ..+.  +|.+-|.. ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence            5688999888877666 5899999999999974221                      1111 1111  25555555 77


Q ss_pred             Ecc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224          832 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       832 ~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      +.+ ++-.+++|+ |.+|.+|...+...+.++.+|...|.|++... ++. +++|+.|.++++|-.  +++...+.+|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            765 444577787 99999999999999999999999999999876 665 899999999999975  566777999999


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  989 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~  989 (1120)
                      .|+++++-|++ .++||+.|.+|++|.-.+       +++.+.||.+   -|+.+++-+++.++-++.||.|+.|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999988 889999999999998655       6788889886   899999999999999999999999999 78


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
                      +++....  +|..-|+++....+++.++++++|++++||+..  ++.+.+.    +|    +..++  ++.+.++  .-+
T Consensus       210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP----ttsiW--sa~~L~N--gDI  273 (745)
T KOG0301|consen  210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP----TTSIW--SAKVLLN--GDI  273 (745)
T ss_pred             ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC----ccceE--EEEEeeC--CCE
Confidence            8877765  899999999999999999999999999999987  6666666    44    22366  6777762  467


Q ss_pred             EEEeCCCcEEEEecC
Q 001224         1070 ALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1070 ~s~~~Dg~v~vW~~~ 1084 (1120)
                      ++|++||-|+||...
T Consensus       274 vvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  274 VVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeccCceEEEEEec
Confidence            888889999999976

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=3.1e-23  Score=235.57  Aligned_cols=243  Identities=14%  Similarity=0.182  Sum_probs=176.4

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      +..+.+|.+.|.+++|+|+...+||+|+.||+|+|||+.++..... .+          ......+.+|...|.+++|+|
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i----------~~p~~~L~gH~~~V~sVaf~P  135 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EI----------KDPQCILKGHKKKISIIDWNP  135 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cc----------ccceEEeecCCCcEEEEEECC
Confidence            3445569999999999998433799999999999999986532110 00          000113678999999999999


Q ss_pred             CCCe-EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          437 DGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       437 dg~~-las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      ++.. |++++.|++|+|||+.+++.+.   .+. |...|.+++|+|+|.  +|++++.|+.|+|||+++++.+.++.+|.
T Consensus       136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        136 MNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            9876 5789999999999999987543   343 567899999999999  78999999999999999999999999999


Q ss_pred             cCeEEEeecc---CCCceEEEEEecCC----eEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          516 APVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       516 ~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      +.+.+.+++.   .+++.+|++++.|+    +|++||++... ++.....+.. ..                  .+....
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~~  270 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPHY  270 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEee
Confidence            8765544322   24557888888764    79999998643 2222211110 00                  111111


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  636 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  636 (1120)
                      ..+++.++++|+.|+.|++|++..+. +..+.......+..+++|.|+.
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            23345688899999999999998764 4444434444567889999964

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5e-24  Score=207.11  Aligned_cols=201  Identities=14%  Similarity=0.237  Sum_probs=170.3

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-ee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV  900 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~  900 (1120)
                      |...|.+..|-..|+.+++++ |.+-.+||+++++.+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus       271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence            888999999999999999999 99999999999999999999999999999999 8999999999999999999853 45


Q ss_pred             eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001224          901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  979 (1120)
Q Consensus       901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~  979 (1120)
                      +..|+||.+.|+++.|..| ..+++|+.|.+|+|||+..-..    .+......    .++..++.+..+..+|.- .+.
T Consensus       350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRtd----S~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRTD----SPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeecC----CccceeEeecCCceEEeccCCc
Confidence            6889999999999999876 5788999999999999987322    22222222    468899999999999995 667


Q ss_pred             eEEEEEcCCceeeecc--ccCCCCCCeeEEEECCCCc--EEEEEEcCCcEEEEEcCCc
Q 001224          980 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      .|++||+...+..+..  .-++|...|+|++|+.+--  -|++++.|..+.=|.+.+.
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            8999999876655443  2358999999999987643  4888999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-22  Score=184.70  Aligned_cols=247  Identities=14%  Similarity=0.132  Sum_probs=201.5

Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                      .|.+.|.+.+|+|+|..+++++.|..|++..++.+..+..+..+                    .-.-|++.|..++|-.
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dl--------------------e~nmhdgtirdl~fld  146 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDL--------------------EFNMHDGTIRDLAFLD  146 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcce--------------------eeeecCCceeeeEEec
Confidence            48899999999999999999999999999877554443322221                    1122889999999964


Q ss_pred             ----CCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc--
Q 001224          835 ----NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--  906 (1120)
Q Consensus       835 ----d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~--  906 (1120)
                          .+..+++++  |..|++-|...++....+.+|.+.|.++-- = ++-++++|+.|.+|++||++-..++.++..  
T Consensus       147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~  224 (350)
T KOG0641|consen  147 DPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF  224 (350)
T ss_pred             CCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceeeeccCcc
Confidence                356788876  678999999999999999999999988742 2 678999999999999999998887777632  


Q ss_pred             -----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCe
Q 001224          907 -----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ  980 (1120)
Q Consensus       907 -----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~  980 (1120)
                           .++.|.+++..|.|++|++|-.|....+||+..+.     .++.+..|..   .|.++.|||.-.|+.+ +.|..
T Consensus       225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsa---dir~vrfsp~a~yllt~syd~~  296 (350)
T KOG0641|consen  225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSA---DIRCVRFSPGAHYLLTCSYDMK  296 (350)
T ss_pred             cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCcc---ceeEEEeCCCceEEEEecccce
Confidence                 23679999999999999999999999999999854     5666666654   8999999999999999 59999


Q ss_pred             EEEEEcCCc--eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          981 LAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       981 v~i~d~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      |++-|+...  ..+.......|...+-.+.|.|..--+++.+.|.++.+|-+.
T Consensus       297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            999998643  222333345789999999999999889999999999999764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.7e-24  Score=201.32  Aligned_cols=256  Identities=18%  Similarity=0.233  Sum_probs=206.0

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~  440 (1120)
                      |.+.|-.+...--|++ |||++.|++|+|+.+..+....                ....|.||.++|+.++|..  -|.+
T Consensus        10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i   72 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI   72 (299)
T ss_pred             hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence            8888998888889995 9999999999999998765311                1114899999999999987  8999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-c--eeEEeeccccC
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP  517 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~--~~~~~~~h~~~  517 (1120)
                      ||+++.||.|.||.-++|+ ..+..+...|...|++|+|.|.+-.++|++++.||.|.|.+.++. .  ..+....|.-.
T Consensus        73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            9999999999999999884 555567788999999999999988889999999999999998754 2  22345679999


Q ss_pred             eEEEeeccCCC-c-----------eEEEEEecCCeEEEEecCCCC--CceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          518 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       518 v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      |++++|.|..- |           ..|++|+.|..|++|+.+...  ...++..|...|..+++.|.-..          
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl----------  221 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL----------  221 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence            99999977521 1           469999999999999988753  23457889999999999886420          


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                             ...++++++.||++.||..+..  ....++. +.-...+..++||..|+.|++++.|+.|.+|.-+
T Consensus       222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                   0136999999999999987632  1111221 2223468899999999999999999999999643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.6e-23  Score=215.92  Aligned_cols=282  Identities=12%  Similarity=0.161  Sum_probs=225.0

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      |..-|.+++++...+.+.+++. |.|+|||+.....                    +.....+......+.|+++.+.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------------------k~PvsqLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------------------KSPVSQLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------------------CCccccccccCcccceeeeEecCC
Confidence            7788888999999888887765 5899999854211                    000011222235778999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  912 (1120)
                      |+.|++|+ ..++.|||+......  ..+........+++.+| |.++..+++.||.|.|||+.+..+++.|+||.+.+.
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            99999999 688999999865432  33443345678899999 999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  991 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~  991 (1120)
                      ||.+++||..|-||+-|.+||-||+.++.+...     .+    ....|.++-.+|.+.+|++| .++.+.|.....-+.
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhh-----hh----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            999999999999999999999999998654221     11    11468999999999999998 667888887765443


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      .   ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+         +...|.  ++..+- |.+++||
T Consensus       627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT  691 (705)
T KOG0639|consen  627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT  691 (705)
T ss_pred             e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence            2   233679999999999999999999999999999999998886654         223244  777776 5799999


Q ss_pred             EeCCCcEEEEec
Q 001224         1072 GLSDGGVHVFEP 1083 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~ 1083 (1120)
                      |+.|..-.||.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999998888875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.1e-21  Score=212.97  Aligned_cols=510  Identities=13%  Similarity=0.136  Sum_probs=316.9

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC---CeEEEEEC
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAYS  446 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg---~~las~~~  446 (1120)
                      -.||+|+++++..  .+..|.||...||+++.                   .+.+|..++..+.+.|..   .++.+++.
T Consensus        22 avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl   80 (792)
T KOG1963|consen   22 AVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCSL   80 (792)
T ss_pred             cccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEec
Confidence            4689999975554  45899999999999886                   488999999999998844   47889999


Q ss_pred             CCeEEEEEccCCceeeeeeeecccccCeEEEEEcC----CCCceEEEEecCCC------------cEEEEECCC--Ccee
Q 001224          447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDK------------TIKVWDATN--GAKQ  508 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~s~d~------------~i~vwd~~~--~~~~  508 (1120)
                      ||.|++||...+..++   ++..+ .+|..+.+.|    ...  .+..+..|.            +++-+.+.+  ....
T Consensus        81 ~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~  154 (792)
T KOG1963|consen   81 DGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG  154 (792)
T ss_pred             CccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccch
Confidence            9999999999998775   23221 2333333321    111  111111111            111111111  0011


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                      ..+..|.. -.++...+..  . +.....+..+.+|+.....  .....               +-..-++.-.+.+.++
T Consensus       155 d~~~~~~~-~~~I~~~~~g--e-~~~i~~~~~~~~~~v~~~~--~~~~~---------------~~~~~~Htf~~t~~~~  213 (792)
T KOG1963|consen  155 DFLKEHQE-PKSIVDNNSG--E-FKGIVHMCKIHIYFVPKHT--KHTSS---------------RDITVHHTFNITCVAL  213 (792)
T ss_pred             hhhhhhcC-CccEEEcCCc--e-EEEEEEeeeEEEEEecccc--eeecc---------------chhhhhhcccceeEEe
Confidence            11122222 1223333332  2 3333345667788776543  11111               1111122224678888


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCC--CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  666 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  666 (1120)
                      +|++++++++..||.|.+|.--.  +.....-..|.|...|.+++|+++|.+|++|+..|.+.+|.+.++.+.+  +...
T Consensus       214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--LPRL  291 (792)
T KOG1963|consen  214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--LPRL  291 (792)
T ss_pred             ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--cccc
Confidence            99999999999999999996433  2222222234556689999999999999999999999999999884221  1111


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc
Q 001224          667 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  746 (1120)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~  746 (1120)
                      ...                                         --....++|+........|+.|.+-...+.......
T Consensus       292 gs~-----------------------------------------I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI  330 (792)
T KOG1963|consen  292 GSP-----------------------------------------ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI  330 (792)
T ss_pred             CCe-----------------------------------------eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence            110                                         113456688888888888999998888766655555


Q ss_pred             eeeccC----CccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224          747 RSLRLP----ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  822 (1120)
Q Consensus       747 ~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~  822 (1120)
                      ..+..+    .....+-.+.++++|.-+.++..+..|.+.+||+.+...-      ....+...+...|..        .
T Consensus       331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i------~~~~v~~~n~~~~~~--------n  396 (792)
T KOG1963|consen  331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI------YKLQVCDENYSDGDV--------N  396 (792)
T ss_pred             cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee------eeEEEEeecccCCcc--------e
Confidence            544433    1234556678899997777888999999999998554321      111111112222221        1


Q ss_pred             CCCCccEEEEccCCCEEEEEe---------CC--cEEEEEcCCCcee-----eeecCCCCCeEEEEEecCCCc-EEEEEe
Q 001224          823 PEEAVPCFALSKNDSYVMSAS---------GG--KISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNN-IIAIGM  885 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s---------dg--~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~-~lasg~  885 (1120)
                      +...+++++.+..|.++++..         ||  .+++|-......-     ....+|...+.+.++.+.-.. ..++++
T Consensus       397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~  476 (792)
T KOG1963|consen  397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS  476 (792)
T ss_pred             eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence            445688888888999999873         22  3889987643322     224568777666666653444 889999


Q ss_pred             CCCcEEEEEeecc----------eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCc-ccccceeeeccCCC
Q 001224          886 DDSSIQIYNVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGR  954 (1120)
Q Consensus       886 ~dg~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~~~  954 (1120)
                      .||.++||-+...          .+...-..|..++++++|+.||..|+ ++.|++|.+||..+. +.....      +.
T Consensus       477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~------~~  549 (792)
T KOG1963|consen  477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE------GS  549 (792)
T ss_pred             cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc------cc
Confidence            9999999998432          23333234889999999999996555 567889999999883 221111      11


Q ss_pred             CCCCCCCcEEEEcc---CCcEEEEEeCCeEEEEEcCCceeee
Q 001224          955 TPTAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTKLECVK  993 (1120)
Q Consensus       955 ~~~~~~i~~~~fsp---dg~~la~~~d~~v~i~d~~~~~~~~  993 (1120)
                      ..  ..+..++|..   ....+..+....+.+|++.++...-
T Consensus       550 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  550 RN--WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             cc--cchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence            10  2233333332   2223334577889999998887765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=7.1e-22  Score=193.20  Aligned_cols=242  Identities=19%  Similarity=0.206  Sum_probs=188.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ..+.|..|.|+|.+.. |++++-||++++||+...+...                    .-.|..++.+++|.+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence            5689999999999986 5566799999999998774432                    334889999999987 56789


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  522 (1120)
                      +|+.||.|+.+|+.++....    +..|..+|.||.+++...  .+++||.|++|++||.+...+..++. ....|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence            99999999999999987554    778999999999998777  69999999999999998866666665 344788876


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      .    .++.|+.|+.|..+.+||+++...........-                   +-.++++++-|++.-+++++-||
T Consensus       143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG  199 (323)
T KOG1036|consen  143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG  199 (323)
T ss_pred             c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence            4    336899999999999999998665442211110                   11455666666667799999999


Q ss_pred             eEEEEECCCC----ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          603 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       603 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .|.+=.++..    +....++.|..       .-+|++++|+|--..|++|+.||.|.+||..+.
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            9988766655    23344444322       136889999999999999999999999998766

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.3e-22  Score=222.26  Aligned_cols=251  Identities=16%  Similarity=0.193  Sum_probs=203.4

Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                      .|....+.++|.|+|..|++++.||.|++|+.....                  +....+..      +...|.+++.  
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------------e~P~ti~~------~g~~v~~ia~--   64 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------------EEPETIDI------SGELVSSIAC--   64 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc------------------cCCchhhc------cCceeEEEee--
Confidence            477889999999999999999999999999863321                  11111110      4556666665  


Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      ++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|++|-.|++-++........+++|.++|.+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            445888888 89999999988776555555667899999999 9999999999999999999999889999999999999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceee
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  992 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~  992 (1120)
                      |.|+|.+.+||+.+.||.|+||+++.+........-...........+..++|+|+|..+++ +.|+.|++|+..+.+..
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            99999999999999999999999998765432221111111111234678899999555555 89999999999999998


Q ss_pred             eccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          993 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      ..+....|...+..++|||+|+|||+++.||.|.|||+++
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            8888777777799999999999999999999999999997

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.1e-23  Score=193.70  Aligned_cols=222  Identities=19%  Similarity=0.268  Sum_probs=179.9

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK  498 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~  498 (1120)
                      +...|.+.|..+...--|++||+++.|++|+|+.++++.....+.+|.||.++|+.++|..  -|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            4667999999999988999999999999999999998876667779999999999999987  677  899999999999


Q ss_pred             EEECCCCce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeCCCCceeEEEEcCC---
Q 001224          499 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD---  570 (1120)
Q Consensus       499 vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~---  570 (1120)
                      ||.-.+|+-  ...+..|...|++++|.|..-|-.|++++.||.|.+.+.+..+.   ......|.-.|.++++.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999887743  34667899999999999999999999999999999999887622   2344567778899999886   


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN  646 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg  646 (1120)
                      |...-.+...          .-..|++|+.|..|+||+..+++-+..-...+|...|+.++|.|.-    .++++++.||
T Consensus       164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            3211111110          0146999999999999999887544333334556689999999953    5799999999


Q ss_pred             cEEEEEcc
Q 001224          647 GIKILATS  654 (1120)
Q Consensus       647 ~i~iwd~~  654 (1120)
                      ++.||-..
T Consensus       234 ~viIwt~~  241 (299)
T KOG1332|consen  234 TVIIWTKD  241 (299)
T ss_pred             cEEEEEec
Confidence            99999765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-19  Score=202.20  Aligned_cols=253  Identities=16%  Similarity=0.239  Sum_probs=205.3

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc-eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      ..|+..-+.|+|.|+|+ +|.+++.||.|++|+...-. ...                   .+.-+...|.+++.  ++.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--ccc
Confidence            35888899999999999 59999999999999986542 111                   12226667777765  455


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      +|++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  +++.||+|-.|++-++.+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999876433   2334567899999999999  799999999999999999999999999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      ++.++|  ++.+|++.+.||.|++||+.++....++..-...-..             .....+..++|+|++..++..+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeec
Confidence            999854  5579999999999999999987766555432110000             0022455678888888899999


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      .|+.|++|+..++.....+........+.+++|+|+|+|||+++.+|.|.|||..+
T Consensus       208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99999999999999988887665555588999999999999999999999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=207.28  Aligned_cols=206  Identities=17%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----  897 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----  897 (1120)
                      -.+++.+++-+|+|.+++.|. .|.|++|.+.+|..+..+.+|...|+|+.|+- |+.+|++|+.||.|.+|++..    
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence            456788999999999999997 89999999999999999999999999999998 999999999999999998853    


Q ss_pred             -----ceeeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          898 -----DEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       898 -----~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                           -+.+..|..|.-+|+.+...+.  ..+|+|+|.|.++++||+..+........         ...+.+++.+|-+
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---------p~si~av~lDpae  229 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---------PSSIKAVALDPAE  229 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---------CCcceeEEEcccc
Confidence                 3567888999999999988765  46899999999999999999754322211         1478999999999


Q ss_pred             cEEEEE-eCCeEEEEEcCCce----------------eeeccccCCCCC--CeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          971 IHFLVV-HETQLAIFETTKLE----------------CVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       971 ~~la~~-~d~~v~i~d~~~~~----------------~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      +.+.+| .+|.|.+.++.+..                .+..+.  +|.+  +|+|++++.||.+|++|+.||.|+|||+.
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            999995 88999888765432                233333  6766  99999999999999999999999999999


Q ss_pred             CcceeeeeC
Q 001224         1032 NLKLRCRIN 1040 (1120)
Q Consensus      1032 ~~~~~~~~~ 1040 (1120)
                      +.+.++++.
T Consensus       308 S~Q~iRtl~  316 (476)
T KOG0646|consen  308 SKQCIRTLQ  316 (476)
T ss_pred             hHHHHHHHh
Confidence            999988765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6.4e-22  Score=190.98  Aligned_cols=237  Identities=16%  Similarity=0.253  Sum_probs=178.2

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  440 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~  440 (1120)
                      .|++.|+++.+.+..-.++++|+.||.|.|||++.........+ +.+ ..|..  ...--.+|.-.|..+.|-| |...
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~v--~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCIV--AKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeeec--cccCCccceeeeeeeEEeeecCce
Confidence            49999999999997555799999999999999976431110000 000 00110  1112568999999999999 8889


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCC-ceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      +.+++-|.+++|||.++-+..-   .+. -.+.|++-+|||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            9999999999999999966443   232 356899999998654 44788888899999999999999999999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      ++.|+|..+ -.|++|+.||.|++||++..                                                  
T Consensus       193 aV~Wsp~~e-~vLatgsaDg~irlWDiRra--------------------------------------------------  221 (397)
T KOG4283|consen  193 AVEWSPSSE-WVLATGSADGAIRLWDIRRA--------------------------------------------------  221 (397)
T ss_pred             EEEeccCce-eEEEecCCCceEEEEEeecc--------------------------------------------------
Confidence            999998765 68899999999999999742                                                  


Q ss_pred             CCCeEEEEECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224          600 DDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                       .|..++.|..+++....++ ...+...++.++|+.++.++++.+.|..+++|+..+|..
T Consensus       222 -sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  222 -SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             -cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence             1223333433333222222 223345789999999999999999999999999988843

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-22  Score=206.52  Aligned_cols=217  Identities=16%  Similarity=0.150  Sum_probs=177.8

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC--
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--  503 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~--  503 (1120)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|.+.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            4589999999999999999999999999999999776   6789999999999999999  79999999999999873  


Q ss_pred             -------CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          504 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       504 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                             +-++++.|..|+-+|+++...+.+...+|++++.|.++++||+..+..+.++..+                  
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------------------  217 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------------------  217 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------------------
Confidence                   3467788999999999999877766679999999999999999987655544332                  


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC----------------CceeEEEecCCCCCCcCeEEEcCCCCEEE
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA  640 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  640 (1120)
                          ..+.+++++|-+..+++|+++|.|.+.++..                +..+..+.+|.....|+|++++-||.+|+
T Consensus       218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                2455566666666788888888887776643                22345555555545899999999999999


Q ss_pred             EEECCCcEEEEEccCcchhhhhcccccccc
Q 001224          641 VSTNDNGIKILATSDGIRLLRTFENLAYDA  670 (1120)
Q Consensus       641 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  670 (1120)
                      +|+.||.++|||+.+. ++++.+.....++
T Consensus       294 SGd~dg~VcvWdi~S~-Q~iRtl~~~kgpV  322 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK-QCIRTLQTSKGPV  322 (476)
T ss_pred             eeCCCCCEEEEecchH-HHHHHHhhhcccc
Confidence            9999999999999887 7777776444433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=8.7e-23  Score=210.50  Aligned_cols=255  Identities=15%  Similarity=0.210  Sum_probs=196.2

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      +..+++.|+.-|.++++|...++ +.||+. |.|+|||+......  .++           .+.. ...-..-|.++.++
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--~Pv-----------sqLd-cl~rdnyiRSckL~  474 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--SPV-----------SQLD-CLNRDNYIRSCKLL  474 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--Ccc-----------cccc-ccCcccceeeeEec
Confidence            34568889999999999999996 888875 89999999654211  010           0000 11234579999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      |||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+  +.+++..||.|.|||+.+...++.|+||.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence            9999999999999999999987542 11223433334677899999999  79999999999999999999999999999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      +.+.||.+  +.+|..|-+|+.|.+||.||++.+........ ..                     .|..+.++|++.++
T Consensus       552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~S---------------------QIfSLg~cP~~dWl  607 (705)
T KOG0639|consen  552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SS---------------------QIFSLGYCPTGDWL  607 (705)
T ss_pred             CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hh---------------------hheecccCCCccce
Confidence            99999987  56678999999999999999998765543221 12                     44455566666799


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.|-+++.+.+-..... ....+  +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus       608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            99999999888776433 33333  334457899999999999999999999999976554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=7.9e-21  Score=209.97  Aligned_cols=205  Identities=18%  Similarity=0.206  Sum_probs=149.5

Q ss_pred             EEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeEeec
Q 001224          829 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~  905 (1120)
                      .++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            46677777766544 3 67889999888777666652 33468899999 888998888765 56778988877665543


Q ss_pred             ccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEE
Q 001224          906 GHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA  982 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d~~v~  982 (1120)
                      . ...+.+++|++++++|+ ++..++.|++||+.+++............+ ........++|+|+++++++  +.++.+.
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            2 23467899999999885 445699999999998754322111111101 11123457899999998655  3567899


Q ss_pred             EEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          983 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       983 i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +||+.+++.+..+.   +...+.+++|+|+|++|++++ .+|.|+|||+.+++.+..++
T Consensus       233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99999888776543   245789999999999998864 58999999999999998887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.4e-21  Score=200.50  Aligned_cols=248  Identities=13%  Similarity=0.200  Sum_probs=196.2

Q ss_pred             cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ..+|.+.+|.|+|. .+++++....++.||+...+...                      ......-....+....+|++
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k----------------------~~~~~g~e~~~~e~FeVShd  314 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK----------------------LKPPYGVEEKSMERFEVSHD  314 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeecccccccc----------------------ccCCCCcccchhheeEecCC
Confidence            46788999999999 88888888999999885432211                      11111112345778899999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc-ceEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITG  913 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~  913 (1120)
                      +++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. |++.|++.+.+|.|++||+....+++.+....+ .=++
T Consensus       315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts  392 (514)
T KOG2055|consen  315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS  392 (514)
T ss_pred             CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee
Confidence            99999988 8999999999999998887 567899999998 888888888899999999999999988864322 2356


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccc-cceeeeccCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcCCc
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL  989 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~---~d~~v~i~d~~~~  989 (1120)
                      +|.|+++.+||+|+..|.|.|||.++.-.. ..+++.....-.   ..|+++.|++|++.||.+   ....+++-.+.+.
T Consensus       393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence            888899999999999999999997652211 122333332222   478999999999999984   5678999999999


Q ss_pred             eeeeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          990 ECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       990 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      .....|..... -+.|+|++|||.|.+||.|..+|.|.+|.+.
T Consensus       470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99888875432 5679999999999999999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.4e-21  Score=189.00  Aligned_cols=295  Identities=17%  Similarity=0.210  Sum_probs=218.4

Q ss_pred             eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224          429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  508 (1120)
Q Consensus       429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~  508 (1120)
                      -.|+.||+.|.+||+|+.||.|.|||..+...-+   .+.+|..+|++++||+||+  .|+|+|.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999866333   6889999999999999999  7999999999999999999999


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                      +.+. ..++|+...|+|......+++--. ..-.+-++....           -..+..+++|..-.      .-.+..|
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f  161 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF  161 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEec-CCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence            9988 778999999999877555555433 223333333211           11222233332111      1112357


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      ++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|+.|++.+.|+.||.|++..-...     +.  
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~r--  233 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----GR--  233 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----Cc--
Confidence            8889999999999999999999999998887544 246888999999999999999999999987532000     00  


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                  ++.+.           ..  
T Consensus       234 ------------------------------------------------------------~~e~e-----------~~--  240 (405)
T KOG1273|consen  234 ------------------------------------------------------------DGEVE-----------PE--  240 (405)
T ss_pred             ------------------------------------------------------------cCCcC-----------hh--
Confidence                                                                        00000           00  


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  828 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~  828 (1120)
                             |                                               ++.|             .-....=.
T Consensus       241 -------~-----------------------------------------------K~qD-------------vVNk~~Wk  253 (405)
T KOG1273|consen  241 -------H-----------------------------------------------KLQD-------------VVNKLQWK  253 (405)
T ss_pred             -------H-----------------------------------------------HHHH-------------HHhhhhhh
Confidence                   0                                               0000             00223345


Q ss_pred             EEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          829 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      +++||.+|.|++.++  ...++||....|.+++.+.+.. .....+.|+| -...+++- ..|.|++|....
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence            688999999998887  4679999999999999998877 4578899999 67677766 789999998654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5.2e-21  Score=187.19  Aligned_cols=283  Identities=15%  Similarity=0.187  Sum_probs=209.5

Q ss_pred             CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      ...+.|+.|.|+|.+..|++++.||++++||+.......    .-.|..++.+++|.++.+   +++|+-||.|+.+|+.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN   83 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence            356789999999999999999999999999999875332    234889999999998766   9999999999999999


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      ++.... +..|..+|.+++..+..  ..+++|+-|++|++||.+.......+.... .|.+                   
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~-------------------  140 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYC-------------------  140 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEE-------------------
Confidence            887654 44599999999986544  479999999999999998633333322221 2332                   


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                          .+-.++.|++|+.+..|.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+... +..+..
T Consensus       141 ----~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk  215 (323)
T KOG1036|consen  141 ----MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK  215 (323)
T ss_pred             ----EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence                333446799999999999999998765443322222335789999998888899999998877544332 110000


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224          664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  743 (1120)
                      +   .           +|.+                                                            
T Consensus       216 k---y-----------aFkC------------------------------------------------------------  221 (323)
T KOG1036|consen  216 K---Y-----------AFKC------------------------------------------------------------  221 (323)
T ss_pred             c---e-----------eEEe------------------------------------------------------------
Confidence            0   0           0000                                                            


Q ss_pred             ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224          744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  823 (1120)
Q Consensus       744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~  823 (1120)
                                  |       .-+.++.          -                                         .
T Consensus       222 ------------H-------r~~~~~~----------~-----------------------------------------~  231 (323)
T KOG1036|consen  222 ------------H-------RLSEKDT----------E-----------------------------------------I  231 (323)
T ss_pred             ------------e-------ecccCCc----------e-----------------------------------------E
Confidence                        0       0000110          0                                         2


Q ss_pred             CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224          824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  886 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  886 (1120)
                      -.+|.+++|+|--..+|+|+ ||.|.+||+.+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s  294 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS  294 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence            24688999999999999998 99999999999998888887778899999999 9999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=3.2e-22  Score=213.14  Aligned_cols=434  Identities=15%  Similarity=0.159  Sum_probs=274.2

Q ss_pred             EEEEcC---CCCeEEEEECCCeEEEEEccCCcee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          431 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       431 ~l~~sp---dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      +..|++   ....||.+.+||.|.++|......-   +++.....|...|..+.|.| |+. .|++++.|.++++||+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence            356665   4557899999999999998764321   12345668999999999999 554 799999999999999999


Q ss_pred             CceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          505 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       505 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                      ++++..  +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +.....            +++.+|...+
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~~~~------------~~~~~~n~~p  197 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEEFDN------------RIYGRHNTAP  197 (720)
T ss_pred             ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHHHhh------------hhhccccCCC
Confidence            998876  899999999999987654 799999999999999997543110 000000            0000000000


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEccCcch
Q 001224          583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR  658 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~  658 (1120)
                            .|. . -    ....++-|-...             ..|.+   +.+..|...||+++. |+.|+|||++....
T Consensus       198 ------tps-k-p----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  198 ------TPS-K-P----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             ------CCC-c-h----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence                  000 0 0    001111121111             12333   556678888888877 99999999987632


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      ..+.-.....                                                                      
T Consensus       253 ~~r~ep~~~~----------------------------------------------------------------------  262 (720)
T KOG0321|consen  253 AYRQEPRGSD----------------------------------------------------------------------  262 (720)
T ss_pred             ccccCCCccc----------------------------------------------------------------------
Confidence            2211100000                                                                      


Q ss_pred             cCCCCccceeeccCC-ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224          739 ELSEPNQCRSLRLPE-NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  817 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  817 (1120)
                                 .++. ....-.+.++.....|.++++.+.|+.|++|++......+.+...            |.+    
T Consensus       263 -----------~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~----  315 (720)
T KOG0321|consen  263 -----------KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL----  315 (720)
T ss_pred             -----------CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc----
Confidence                       0000 002345677888888999999999999999998654443322211            110    


Q ss_pred             CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                           ....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++
T Consensus       316 -----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  316 -----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             -----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence                 111122345689999999999 99999999987654 45678999999999999976677888899999999999


Q ss_pred             ecce--------------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224          896 RVDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  961 (1120)
Q Consensus       896 ~~~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i  961 (1120)
                      ..+-              ....+++|.-.+..+.++-.+.+....  .+.+++|...                       
T Consensus       391 ~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------  445 (720)
T KOG0321|consen  391 SNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------  445 (720)
T ss_pred             cCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------
Confidence            6542              223445666666555555444332222  3445555432                       


Q ss_pred             cEEEEccCCcEEEEE-----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc-----------CCcE
Q 001224          962 TRVQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATV 1025 (1120)
Q Consensus       962 ~~~~fspdg~~la~~-----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----------Dg~v 1025 (1120)
                      ..++..|++.-...+     ..-.|...+....+....-...+|-..|....+++.+..+++++-           ++.+
T Consensus       446 ~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~  525 (720)
T KOG0321|consen  446 VSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSV  525 (720)
T ss_pred             cchhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccc
Confidence            233344444333331     122355555554444433333356667777777777777888876           7888


Q ss_pred             EEEEcCC
Q 001224         1026 CVFSAAN 1032 (1120)
Q Consensus      1026 ~iwd~~~ 1032 (1120)
                      .+|....
T Consensus       526 ~s~~s~l  532 (720)
T KOG0321|consen  526 NSPNSSL  532 (720)
T ss_pred             ccccccc
Confidence            8887644

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=5.1e-22  Score=204.58  Aligned_cols=233  Identities=20%  Similarity=0.326  Sum_probs=181.6

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .-.++.+|.+.-+.++|++...-.|++|+.|++|.+||+.......            ........+.+|...|..++|+
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h  236 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH  236 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence            3457788999999999999888789999999999999997654310            1111233688999999999999


Q ss_pred             C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeec
Q 001224          436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG  513 (1120)
Q Consensus       436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~  513 (1120)
                      + +..++++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .+++.++.+
T Consensus       237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~  314 (422)
T KOG0264|consen  237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG  314 (422)
T ss_pred             ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence            9 7788999999999999999974 34444567899999999999999887 899999999999999996 457899999


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      |...|..+.|+|..+ ..|++++.|+.+.+||+..-+....-.........+       .+.-|.+...|..+.|+|...
T Consensus       315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~eP  386 (422)
T KOG0264|consen  315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNEP  386 (422)
T ss_pred             CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCCC
Confidence            999999999998766 699999999999999998755443211111111122       222233334566777777776


Q ss_pred             EE-EEEeCCCeEEEEECC
Q 001224          594 RF-LAAGDDFSIKFWDMD  610 (1120)
Q Consensus       594 ~l-~~~~~dg~i~iwd~~  610 (1120)
                      ++ +++++|+.+.||++.
T Consensus       387 W~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  387 WTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eEEEEecCCceEEEeecc
Confidence            55 557899999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=9.2e-21  Score=201.81  Aligned_cols=451  Identities=12%  Similarity=0.142  Sum_probs=282.2

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  445 (1120)
                      .|..++|-|||..|+++++  ..+.|||+..|..+.                   .+++|.+.|+|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence            7899999999998777654  789999999998877                   4999999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeecc
Q 001224          446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  525 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  525 (1120)
                      .|..|.+|+-.-...++     -.|.+.|.||.|+|-..  .+++++-. ..-+|........+ .+ ....+.+++|  
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW--  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW--  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence            99999999876544333     25999999999999988  58888753 45688865544322 11 2234555555  


Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      ..||++++.|-.+|+|.+=+-.. +....+.   +.+.+|.+++|+|...   .|.             ...+++.....
T Consensus       141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G~-------------~di~aV~DW~q  203 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EGR-------------NDILAVADWGQ  203 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CCc-------------cceEEEEeccc
Confidence            67889999999999998875443 3322222   3456778888877653   111             13566777778


Q ss_pred             eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcc
Q 001224          603 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  682 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1120)
                      ++.++.+. |+.+..-..-+  -...|+++-++|.++..|+.|+.+.+|-- .|.. +-++                   
T Consensus       204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~Gvr-LGTv-------------------  259 (1081)
T KOG1538|consen  204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVR-LGTV-------------------  259 (1081)
T ss_pred             eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cCeE-Eeec-------------------
Confidence            88888874 44443222111  13578999999999999999999999842 2200 0000                   


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224          683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  762 (1120)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  762 (1120)
                                                                                             ......|..
T Consensus       260 -----------------------------------------------------------------------g~~D~WIWt  268 (1081)
T KOG1538|consen  260 -----------------------------------------------------------------------GEQDSWIWT  268 (1081)
T ss_pred             -----------------------------------------------------------------------cccceeEEE
Confidence                                                                                   002345666


Q ss_pred             EEEcCCCceEEEeccCceEEEeeecccccC------------------------CC---------------Ccccc---c
Q 001224          763 LIFTNSGNAILALASNAIHLLWKWQRTERN------------------------SS---------------GKATA---S  800 (1120)
Q Consensus       763 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~------------------------~~---------------~~~~~---~  800 (1120)
                      ++..|++..++.|+.||+|..|++...+..                        ..               ...++   .
T Consensus       269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp  348 (1081)
T KOG1538|consen  269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP  348 (1081)
T ss_pred             EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence            677777777777777777777665432100                        00               00000   0


Q ss_pred             cCceeecCCCCCcccccCCCC-CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--------eeeecCCCCCeEEE
Q 001224          801 VAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--------MATFMPPPPAATFL  871 (1120)
Q Consensus       801 ~~~~~w~~~~g~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--------~~~~~~~~~~i~~l  871 (1120)
                      ..+.+|...++........-. .-.....+--+--.++.++.+.+..+..+|...-+.        ++-++.-.+     
T Consensus       349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GG-----  423 (1081)
T KOG1538|consen  349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGG-----  423 (1081)
T ss_pred             ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcC-----
Confidence            123344443333211100000 000001111111234566666677777777653111        111111111     


Q ss_pred             EEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc
Q 001224          872 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP  951 (1120)
Q Consensus       872 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~  951 (1120)
                         |.+..-|+.|..||.|.-.=+++.-.+ -+......|.|+..+...+.||+....++..++|+.+++.    .++.+
T Consensus       424 ---P~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp  495 (1081)
T KOG1538|consen  424 ---PPGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP  495 (1081)
T ss_pred             ---CCCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC
Confidence               225567888998987754333332222 2333557799999999999999999999999999999653    23322


Q ss_pred             CCCCCCCCCCcEEEEccCCc-EEEEEeCCeEE
Q 001224          952 TGRTPTAQSDTRVQFHQDQI-HFLVVHETQLA  982 (1120)
Q Consensus       952 ~~~~~~~~~i~~~~fspdg~-~la~~~d~~v~  982 (1120)
                              .+.+++|..... +++.+..|.+.
T Consensus       496 --------g~nSV~wNT~~E~MlcfT~~g~L~  519 (1081)
T KOG1538|consen  496 --------GANSVAWNTQCEDMLCFTGGGYLN  519 (1081)
T ss_pred             --------CCceEEeeccccceEEEecCCceE
Confidence                    568889987543 44444445444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=4.8e-20  Score=203.65  Aligned_cols=294  Identities=13%  Similarity=0.157  Sum_probs=204.1

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      ++.+++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+.. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence            3578899999999999999987655   444443 4678999999984 346778899999999999988887765544 


Q ss_pred             eEEEeeccCCCceEEE-EEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          518 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      +..+++++  +++.++ +++.|+.|++||+.+......+.. ..                     ....++++|++..++
T Consensus        75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~---------------------~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GV---------------------EPEGMAVSPDGKIVV  130 (300)
T ss_pred             ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CC---------------------CcceEEECCCCCEEE
Confidence            45567654  445554 455689999999987544333321 11                     123355566666788


Q ss_pred             EEeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCcchhhhhcccccccccccC
Q 001224          597 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS  674 (1120)
Q Consensus       597 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  674 (1120)
                      +++.++ .+.+||..+++.........   ...+++|+|++++|++++ .++.|++||+.++ +....+.          
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~----------  196 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT----------  196 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee----------
Confidence            877664 57788998887766554322   357799999999886554 5899999998765 1111110          


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224          675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  754 (1120)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  754 (1120)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (300)
T TIGR03866       197 --------------------------------------------------------------------------------  196 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                                +...+.      ..                                            .......++|+|
T Consensus       197 ----------~~~~~~------~~--------------------------------------------~~~~~~~i~~s~  216 (300)
T TIGR03866       197 ----------FEIPGV------HP--------------------------------------------EAVQPVGIKLTK  216 (300)
T ss_pred             ----------eccccc------cc--------------------------------------------ccCCccceEECC
Confidence                      000000      00                                            011123577888


Q ss_pred             CCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEeecceeeEeecccccce
Q 001224          835 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI  911 (1120)
Q Consensus       835 d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V  911 (1120)
                      ++++++++.  ++.+.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~  293 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP  293 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence            888755542  6789999998888766553 445789999999 88888776 56899999999999999988765 555


Q ss_pred             EEEEEcc
Q 001224          912 TGLAFSH  918 (1120)
Q Consensus       912 ~~l~~s~  918 (1120)
                      ++++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=4.5e-21  Score=202.58  Aligned_cols=313  Identities=17%  Similarity=0.235  Sum_probs=227.9

Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      ...+.||++.|.++...|.|.  +|++|+.||+|+||.+.+|.|++++. ..+.|.+++|.+.++...|+.+-... +.+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i  468 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI  468 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence            346889999999999999999  89999999999999999999999887 56789999999988866666665444 544


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE----eCCCeEEEEECCCCce----e
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L  615 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~  615 (1120)
                      -+..-+..+..                      +.+.            ..|.++    ..++.+..|.-.....    +
T Consensus       469 vnp~~G~~~e~----------------------~~t~------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v  514 (733)
T KOG0650|consen  469 VNPIFGDRLEV----------------------GPTK------------ELLASAPNESEPDAAVVTWSRASLDELEKGV  514 (733)
T ss_pred             eCccccchhhh----------------------cchh------------hhhhcCCCccCCcccceeechhhhhhhccce
Confidence            44332211110                      0000            112222    2356777886542211    1


Q ss_pred             -EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhh
Q 001224          616 -TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA  691 (1120)
Q Consensus       616 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1120)
                       ..+.   +...|..+.|+..|.||++...+   ..|.|.++... ....                     ++       
T Consensus       515 ~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~---------------------PF-------  562 (733)
T KOG0650|consen  515 CIVIK---HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQS---------------------PF-------  562 (733)
T ss_pred             EEEEe---cCCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccC---------------------ch-------
Confidence             2222   23469999999999999987654   34555555432 0000                     00       


Q ss_pred             hhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCce
Q 001224          692 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  771 (1120)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  771 (1120)
                                                                                    .-..+.|.++.|+|...+
T Consensus       563 --------------------------------------------------------------~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  563 --------------------------------------------------------------RKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             --------------------------------------------------------------hhcCCceeEEEecCCCce
Confidence                                                                          113467889999999998


Q ss_pred             EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEE
Q 001224          772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF  850 (1120)
Q Consensus       772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vw  850 (1120)
                      +++++.. .|++||+.                      .+.++...+.   ....|..++++|.|..|+.|+ |+.+..+
T Consensus       581 lfVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~Wf  634 (733)
T KOG0650|consen  581 LFVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWF  634 (733)
T ss_pred             EEEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence            8887765 67888763                      3333332222   467799999999999999999 9999999


Q ss_pred             EcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec------c---eeeEeecccccc----eEEEEE
Q 001224          851 NMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAF  916 (1120)
Q Consensus       851 d~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------~---~~~~~l~~h~~~----V~~l~~  916 (1120)
                      |+.- .+..+++..|...+++|+|++ .-.++++|+.||++.||.-.-      .   -.+..+.+|...    |..+.|
T Consensus       635 DldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w  713 (733)
T KOG0650|consen  635 DLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW  713 (733)
T ss_pred             EcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence            9974 356788899999999999999 888999999999999985321      1   134678899876    889999


Q ss_pred             ccCCCEEEEEeCCCCEEEE
Q 001224          917 SHALNVLVSSGADSQLCVW  935 (1120)
Q Consensus       917 s~d~~~l~s~s~Dg~v~iW  935 (1120)
                      +|...+|++++.||+|++|
T Consensus       714 HP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  714 HPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCCCceEEecCCCceEEee
Confidence            9999999999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=5.7e-21  Score=184.50  Aligned_cols=246  Identities=17%  Similarity=0.255  Sum_probs=186.1

Q ss_pred             ccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE
Q 001224          754 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  832 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~  832 (1120)
                      .+|.-.|..+.|-|- ..++.+++-|.+++|||.++.+..                     ..  +   ..++.|.+-++
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham  151 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM  151 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence            358888999888884 445666777999999997542210                     00  0   14566777777


Q ss_pred             ccCCC---EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEee---
Q 001224          833 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL---  904 (1120)
Q Consensus       833 s~d~~---~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l---  904 (1120)
                      ||-..   ++|+|. +-.|++-|+.+|....++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+   
T Consensus       152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            77443   677777 6789999999999999999999999999999966778899999999999999753 333332   


Q ss_pred             -----------cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcE
Q 001224          905 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIH  972 (1120)
Q Consensus       905 -----------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~  972 (1120)
                                 .+|.+.|.+++|+.|+.++++++.|..+++|+...|+...............  ..-..+. +-+ +.+
T Consensus       232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf  308 (397)
T KOG4283|consen  232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF  308 (397)
T ss_pred             cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence                       3578899999999999999999999999999999887544333222221111  0111122 223 333


Q ss_pred             EEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          973 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       973 la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      +..-.++.+.++++-.+..++.+.  .|-..|.+.+|.|+-+.+.+|..|+.|..|-.
T Consensus       309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence            333567999999999999999887  77889999999999999999999999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=4.4e-20  Score=196.71  Aligned_cols=174  Identities=13%  Similarity=0.205  Sum_probs=129.6

Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      .|..++|-|||..|+.+..+ .+.+||.+.|..+.   ++.+|.+.|++++|+.||+  .+++|+.|+.|.+|+.+- +-
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~kl-EG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKL-EG   86 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccc-cc
Confidence            89999999999999887644 59999999998776   7999999999999999999  699999999999999542 22


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      +..+. |.+.|.|+.|+|-.  +.|++++. ...-+|.......                       ........+.+.+
T Consensus        87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V-----------------------~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   87 ILKYS-HNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSV-----------------------SKHKSSSRIICCS  139 (1081)
T ss_pred             eeeec-cCCeeeEeecCchH--HHhhhcch-hhccccChhhhhH-----------------------HhhhhheeEEEee
Confidence            33333 89999999987654  67888875 3455675543211                       1111122455666


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-CCCCCCcCeEEEcCCC
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG  636 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~  636 (1120)
                      |..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|..
T Consensus       140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCC
Confidence            7777779999999999999875 4444444433 3344578899998854

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.2e-23  Score=220.53  Aligned_cols=232  Identities=16%  Similarity=0.256  Sum_probs=204.9

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      |...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||+..++.+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence            777888888877888999998 78888999988878888999999999999999 8999999999999999999999999


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  980 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~  980 (1120)
                      ++|.||...+.+|.|+|-+.+.|+|+.|+.+++||+..     ..|.....+|.   ..+..+.|+|+|++++.+ .|..
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence            99999999999999999999999999999999999985     23566666665   378899999999999995 6699


Q ss_pred             EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224          981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
                      ++|||+..|+....|.  .|.+.+.++.|.|..-++++|+.|++|++||+++.+.+....+.   ..|     |.  +.+
T Consensus       178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~  245 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA  245 (825)
T ss_pred             eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence            9999999999999887  78999999999999999999999999999999999999776622   222     45  899


Q ss_pred             ecCCCCCEEEEEeCCC
Q 001224         1061 AHPQEPNEFALGLSDG 1076 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg 1076 (1120)
                      |+| ++..+.+|..+.
T Consensus       246 fn~-~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNP-DGKIVLSGEQIS  260 (825)
T ss_pred             ecC-CceeeecCchhh
Confidence            999 688888876554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=193.35  Aligned_cols=292  Identities=15%  Similarity=0.247  Sum_probs=222.3

Q ss_pred             ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      .+.|++|.|.|...  ++++++.|++++||-+..  ...++.+.-...+|.+.+|.+.+. ..+++++....++.||+.+
T Consensus       213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence            46899999999988  899999999999998763  455677766778999999876432 3889999999999999987


Q ss_pred             CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcC
Q 001224          549 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  628 (1120)
Q Consensus       549 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  628 (1120)
                      .+....-                  ...|.....+....+++++++++..+..|.|.+....+++.+.+++..+.   |.
T Consensus       290 ak~~k~~------------------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v~  348 (514)
T KOG2055|consen  290 AKVTKLK------------------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---VS  348 (514)
T ss_pred             ccccccc------------------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---Ee
Confidence            5433211                  11222233555666777778999999999999999999999999987654   88


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224          629 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  708 (1120)
Q Consensus       629 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1120)
                      .++|+.|++.|++.+.+|.|.+||++.. .+++.+..                                           
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D-------------------------------------------  384 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVD-------------------------------------------  384 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEee-------------------------------------------
Confidence            9999999999999999999999999876 33332211                                           


Q ss_pred             CCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224          709 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  788 (1120)
Q Consensus       709 ~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~  788 (1120)
                                                   +                 ..-.-++++.+++|.++++|+..|.|-|||.+.
T Consensus       385 -----------------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  385 -----------------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             -----------------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccch
Confidence                                         0                 001224678889999999999999999998754


Q ss_pred             cccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCC-
Q 001224          789 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP-  864 (1120)
Q Consensus       789 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~-  864 (1120)
                      ...+...+.+..                 +  ..-...|+++.|++|++.||.++   ...+++-.+.+......++.. 
T Consensus       419 ~~~s~~PkPik~-----------------~--dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n  479 (514)
T KOG2055|consen  419 CFASTNPKPIKT-----------------V--DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN  479 (514)
T ss_pred             hhccCCCCchhh-----------------h--hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence            322211111111                 0  11466799999999999999988   477999998877666555443 


Q ss_pred             --CCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          865 --PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       865 --~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                        -+.++||+||| .+.++|.|..+|.|.+|.+.
T Consensus       480 ~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 TKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence              34689999999 89999999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.8e-20  Score=179.96  Aligned_cols=275  Identities=12%  Similarity=0.169  Sum_probs=207.9

Q ss_pred             CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      .|..+..++.+.. ..|+.||+.|.+ ||+|+.||.|.|||+.|...-.                   ++.+|..+|.++
T Consensus        13 ~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl   71 (405)
T KOG1273|consen   13 YPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL   71 (405)
T ss_pred             ChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence            3566677888777 999999999995 9999999999999998865322                   689999999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      +||+||+.|+++|.|..|.+||+..|..+..+   + ...+|+.+.|.|...+. ++..-.+..-.+-++..+... .+.
T Consensus        72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri---r-f~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~-~Lp  145 (405)
T KOG1273|consen   72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI---R-FDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHS-VLP  145 (405)
T ss_pred             EecCCCCEeeeecCCceeEEEeccCCCceeEE---E-ccCccceeeeccccCCe-EEEEEecCCcEEEEecCCcee-ecc
Confidence            99999999999999999999999999876533   2 46799999999987763 444444444555555542221 111


Q ss_pred             -ccccC--eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC-CceeEEEEcCCCCeEEecccccce-----
Q 001224          513 -GHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSL-----  583 (1120)
Q Consensus       513 -~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~~~~~i-----  583 (1120)
                       ...+.  +..-+-..+..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....++.+     
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence             11111  111111245667899999999999999999998888777665 788889999988855544333322     


Q ss_pred             ---------------------------eEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224          584 ---------------------------GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  635 (1120)
Q Consensus       584 ---------------------------~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  635 (1120)
                                                 ..++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|+|-
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~  304 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV  304 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence                                       3477889999998876 456799999999999999976653 35678899998


Q ss_pred             CCEEEEEECCCcEEEEEccCc
Q 001224          636 GCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       636 ~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ...+++- ..|.+++|.....
T Consensus       305 rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  305 RPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeeeeec-cCCceEEEEeecc
Confidence            8777776 6799999987543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.9e-22  Score=217.69  Aligned_cols=235  Identities=12%  Similarity=0.305  Sum_probs=206.6

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      ..|...|.|+..-..++ .+++|+.|..+-+|.+.....+.                   .+.+|..+|.++.|+++..+
T Consensus        25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L   84 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL   84 (825)
T ss_pred             hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence            34888999999866667 69999999999999986543332                   37899999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEE
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  520 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~  520 (1120)
                      |+.|+.+|+|++||++.++.++   +|.||...+.++.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus        85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence            9999999999999999998777   8999999999999999999  6899999999999999999999999999999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      +.|.  ++|.++++|+.|.++++||+..++....|..|...+.++.|.|...                     .+.+|+.
T Consensus       160 l~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~  216 (825)
T KOG0267|consen  160 LRLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSS  216 (825)
T ss_pred             Eeec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCC
Confidence            9984  5678999999999999999999998888888888777777666543                     6788999


Q ss_pred             CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224          601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  645 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  645 (1120)
                      |+++++||+++.+.+...+..  ...|.+.+|+|+++.+++|...
T Consensus       217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence            999999999998888777654  5579999999999999988764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.7e-20  Score=178.35  Aligned_cols=268  Identities=19%  Similarity=0.375  Sum_probs=189.8

Q ss_pred             cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       468 ~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      .+|.+-|.++.|.+-|+  .+++|+.|++|+|||....    .+....+.|.+.|..+.|.+.+-|+.+++++.|+++.+
T Consensus        10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            47999999999999999  5999999999999996543    45567789999999999998888999999999999999


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      |.-..    ..+..+                                             =+-|..     ..++.  ..
T Consensus        88 WEE~~----~~~~~~---------------------------------------------~~~Wv~-----~ttl~--Ds  111 (361)
T KOG2445|consen   88 WEEQE----KSEEAH---------------------------------------------GRRWVR-----RTTLV--DS  111 (361)
T ss_pred             eeecc----cccccc---------------------------------------------cceeEE-----EEEee--cC
Confidence            95321    111111                                             111211     12222  22


Q ss_pred             CCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          624 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       624 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                      ...|+++.|.|  -|-.|++++.||.+|||+..+..                                            
T Consensus       112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------------------------------  147 (361)
T KOG2445|consen  112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------------------------------  147 (361)
T ss_pred             CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence            33688899998  57899999999999999875441                                            


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                   .+.-|.+..     +++.+..               |-|            
T Consensus       148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------  166 (361)
T KOG2445|consen  148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------  166 (361)
T ss_pred             -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence                                         111222211     0000000               000            


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCCEEEEEeCC------cEEEEEc
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSASGG------KISLFNM  852 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~sdg------~i~vwd~  852 (1120)
                                                              .+.....|+.|+|   ...+||+|+|.      .+.||..
T Consensus       167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                                                    0223333444443   22467777643      6888876


Q ss_pred             CCC----ceeeeecCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEEeecc--------------------eeeEeec
Q 001224          853 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK  905 (1120)
Q Consensus       853 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~  905 (1120)
                      ...    ..+.++..|..+|+.++|.|.-|   .+||+++.|| |+||.+...                    +.+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            533    34566789999999999999544   4899999999 999998731                    2456678


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      +|.+.|+.+.|.-.|..|+|.|.||.||+|...-
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999999999999999999999999999997654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=2.3e-20  Score=199.10  Aligned_cols=290  Identities=12%  Similarity=0.114  Sum_probs=206.6

Q ss_pred             ceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEE
Q 001224          770 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS  848 (1120)
Q Consensus       770 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~  848 (1120)
                      ..|+.+-++|.|.++|.....+.               ++..++..  .  ..|.+.|..+.|.|....|++++ |.+++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r  125 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR  125 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence            35677777899999987543332               11111111  1  23999999999999777888887 89999


Q ss_pred             EEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001224          849 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------------------------  899 (1120)
Q Consensus       849 vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------------------------  899 (1120)
                      +||+++.+++..  +.+|.+.+.+++|.|.+...+++|+.||.|.|||++-..                           
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            999999988877  899999999999999889999999999999999986321                           


Q ss_pred             eeEeecccccceEE---EEEccCCCEEEEEeC-CCCEEEEECCCcccccce-ee--eccCCCCCCCCCCcEEEEccCCcE
Q 001224          900 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNR-FL--QIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~-~~--~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      .+....+|...|.+   +.+..|...||++|. |+.|+|||+......... ..  .....+......+.++.....|.+
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11223446666666   667789999999988 999999999875432111 11  111111111235677777777888


Q ss_pred             EEE-EeCCeEEEEEcCCceeeeccccCCCCC--CeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224          973 FLV-VHETQLAIFETTKLECVKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus       973 la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
                      |.+ +.|+.|+.|++.+...-......++..  --..=..|||+.+|++|+.|..+++|.+.+.+.--.+.      .||
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh  359 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH  359 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence            777 799999999998765433332223211  11122459999999999999999999998876543322      243


Q ss_pred             CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ... |.  .++|.|.+-.-++++++|-.+++|++..+-
T Consensus       360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence            222 44  788888766678888999999999996654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3.5e-20  Score=190.33  Aligned_cols=254  Identities=19%  Similarity=0.282  Sum_probs=192.9

Q ss_pred             CCCCceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224          363 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~  440 (1120)
                      +...|++++|+|... .++|+|...|.|-+||+.+.+......               .++..|.++|.+|.|+| +-..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence            789999999999876 789999999999999996443332111               14788999999999999 6778


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-eEEeeccccCeE
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY  519 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~-~~~~~~h~~~v~  519 (1120)
                      +.+.|.||+|++-|++++.. .....+..-...+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            99999999999999998652 22223433455778899998888  577777777999999997654 566777888999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCce----eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      +++++|-.. .++++++.|++.+|||++......    ....|...|.+..|||.|                     ..|
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~---------------------gtl  384 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG---------------------GTL  384 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC---------------------Cce
Confidence            999988655 799999999999999998754332    233444455555555544                     469


Q ss_pred             EEEeCCCeEEEEECC----CCceeEEEecCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          596 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++.+.|..|+|||..    ...+...+......   -.....+|.|+..++++|..-..|-|+|-..+
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            999999999999983    33444444422211   12345789999999999999889999987665

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=6.5e-20  Score=193.95  Aligned_cols=323  Identities=15%  Similarity=0.296  Sum_probs=229.8

Q ss_pred             eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC--EEEEEECCCcEEE
Q 001224          573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI  650 (1120)
Q Consensus       573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i  650 (1120)
                      .++.||. +.+.+++.+|.|.+|++|+.||+|+||.+.+|+++.++...+   .|.|++|+|.+.  .||++..+ .+.|
T Consensus       394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~~i  468 (733)
T KOG0650|consen  394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CVLI  468 (733)
T ss_pred             eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ceEE
Confidence            3444544 488899999999999999999999999999999999998765   499999999654  45544443 4666


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceee----c
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E  726 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~  726 (1120)
                      .+..-|.+.....   ..                                                    ..+..    .
T Consensus       469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~  493 (733)
T KOG0650|consen  469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES  493 (733)
T ss_pred             eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence            5544331111100   00                                                    00000    1


Q ss_pred             cCCCcceeeecccCCCCc--cceeeccCCccccccEEEEEEcCCCceEEEeccC---ceEEEeeecccccCCCCcccccc
Q 001224          727 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                      ..+..+..|.-.......  .+..+.     |...|..+.|+..|.+|++...+   ..|.|+++....           
T Consensus       494 ~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-----------  557 (733)
T KOG0650|consen  494 EPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-----------  557 (733)
T ss_pred             CCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-----------
Confidence            122345566544222111  122222     77899999999999999988774   567777663211           


Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII  881 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l  881 (1120)
                              +.    ..+..  ..+.|.++.|+|...+|++++...|++||+.....+..+......|..++.+| .|.-|
T Consensus       558 --------sQ----~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl  622 (733)
T KOG0650|consen  558 --------SQ----SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL  622 (733)
T ss_pred             --------cc----Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence                    11    11111  46778999999999999999999999999999888888887788899999999 88888


Q ss_pred             EEEeCCCcEEEEEeecc-eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCC
Q 001224          882 AIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  960 (1120)
Q Consensus       882 asg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~  960 (1120)
                      +.|+.|+.+..||+.-. +..+++..|...|++|+|++.-.++++|+.||++.|+--.-...    .++.+         
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~qnp---------  689 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQNP---------  689 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhcCC---------
Confidence            89999999999999854 67788899999999999999999999999999999885221100    00000         


Q ss_pred             CcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCC----CCCeeEEEECCCCcEEEEEEcCCcEEEE
Q 001224          961 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVF 1028 (1120)
Q Consensus       961 i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~iw 1028 (1120)
                                 +|+                .++.  ..+|    ...|..+.|.|..-+|++++.||+|++|
T Consensus       690 -----------liV----------------PlK~--L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 -----------LIV----------------PLKR--LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -----------ceE----------------eeee--ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                       000                0111  1244    3358899999999999999999999998

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=4.2e-20  Score=184.95  Aligned_cols=269  Identities=14%  Similarity=0.241  Sum_probs=198.0

Q ss_pred             CcceeeeccCCCCceEEEEecCC-CeEEEEEeCCCcEEEEecCCCcee-EeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg-~~lla~g~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      |..-...+.|.+.|+.+.-++-| ..+.|+=+..|.|.|||+...-.- ....+.+-    .+...+...+.+|.+.=++
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~----~s~~~Pl~t~~ghk~EGy~  216 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVK----DSEFRPLFTFNGHKGEGYG  216 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccccc----ccccCceEEecccCcccee
Confidence            45555677899999999999875 445667777899999998542110 00000000    0112223357899999999


Q ss_pred             EEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---ce
Q 001224          432 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK  507 (1120)
Q Consensus       432 l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~  507 (1120)
                      ++||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||.... +|++||-||+|+|||++.+   .+
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence            99999 3345888888889999999988755445567889999999999999887 8999999999999999988   44


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      +.+ +.|.+.|+.+.|+...  .+|++|+.||++++||++..   .++..+..|..+|+++.|+|...            
T Consensus       296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------  360 (440)
T KOG0302|consen  296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------  360 (440)
T ss_pred             eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence            444 8899999999996554  48999999999999999864   45567788888888888887665            


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------eEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCc
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNG  647 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~  647 (1120)
                              ..+++++.|..|.+||+....-                -+.+-.|.+...+..+.|++. ..++++.+.|| 
T Consensus       361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-  431 (440)
T KOG0302|consen  361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-  431 (440)
T ss_pred             --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence                    4688899999999999853221                112223444556888999985 44666666665 


Q ss_pred             EEEE
Q 001224          648 IKIL  651 (1120)
Q Consensus       648 i~iw  651 (1120)
                      +.||
T Consensus       432 fnVf  435 (440)
T KOG0302|consen  432 FNVF  435 (440)
T ss_pred             eeEE
Confidence            3444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.9e-20  Score=191.75  Aligned_cols=268  Identities=13%  Similarity=0.170  Sum_probs=197.9

Q ss_pred             CceEEEEecC-------CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCc------ccccccccCCCCceEEE
Q 001224          366 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM------PLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       366 ~v~~v~~spd-------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~V~~l  432 (1120)
                      ...|++|...       |. ++|.|+.|..|.|||+.--..+.    +...++....      ........+|++.|.++
T Consensus       175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L  249 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL  249 (463)
T ss_pred             cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence            3456666432       45 59999999999999986322211    1111111111      11122355899999999


Q ss_pred             EEcCC-CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224          433 IWSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  511 (1120)
Q Consensus       433 ~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  511 (1120)
                      +|+.+ ...||+||.|.+|++||+.+|++..   ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~  325 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE  325 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence            99984 5689999999999999999999665   67789999999999998877 8999999999999999853333222


Q ss_pred             eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          512 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                      -...+.|..++|.+... ..++++..||+|+-+|++.. ++.+++..|...|.++++++.-.                  
T Consensus       326 wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p------------------  386 (463)
T KOG0270|consen  326 WKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP------------------  386 (463)
T ss_pred             EEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC------------------
Confidence            22457899999987654 57788889999999999987 67889999999999999887665                  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       591 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                        +.+++++.|+.|++|++............-......|.++.|+- .+++.|+..+.+++||+.+.....+.|
T Consensus       387 --~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF  458 (463)
T KOG0270|consen  387 --GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF  458 (463)
T ss_pred             --cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence              57899999999999998755443222211122345677778854 467778888889999998875444444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.5e-20  Score=204.98  Aligned_cols=283  Identities=15%  Similarity=0.242  Sum_probs=207.2

Q ss_pred             CCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcC-CCceEEEeccCceEEEeeecccccCCCCcc
Q 001224          719 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA  797 (1120)
Q Consensus       719 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~  797 (1120)
                      +...++.++. ..+++|.+........+..-.-....-.-.+..+.|.. +.+.|++++.+|.|.+||+...-.      
T Consensus        50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------  122 (839)
T KOG0269|consen   50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------  122 (839)
T ss_pred             CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence            4444444443 45566766654443333221100011122234455553 456789999999999999853100      


Q ss_pred             ccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec
Q 001224          798 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  875 (1120)
Q Consensus       798 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp  875 (1120)
                                    ......+..  |...+.++.|++-. .+|++|+ ||+|++||++..+-..++.+....|..|+|+|
T Consensus       123 --------------nk~l~~f~E--H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  123 --------------NKLLTVFNE--HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             --------------chhhhHhhh--hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence                          011111223  99999999999855 5677888 99999999999888888888888999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCC
Q 001224          876 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR  954 (1120)
Q Consensus       876 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~  954 (1120)
                      ..+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||+|++|+|||+.+++.....++...   
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---  263 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---  263 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence            8899999999999999999986 466788999999999999999999999999999999999998766555454443   


Q ss_pred             CCCCCCCcEEEEccCCcE-EEEE---eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-CCcEEEEEEcCCcEEEEE
Q 001224          955 TPTAQSDTRVQFHQDQIH-FLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       955 ~~~~~~i~~~~fspdg~~-la~~---~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd 1029 (1120)
                          .++.++.|-|+..+ ||++   .|-.|+|||++.--.-. .....|...++.++|-. |...|.+++.||+|..-.
T Consensus       264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~-~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY-ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL  338 (839)
T ss_pred             ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccc-eeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence                47899999998665 4543   78899999997543322 22237899999999965 566789999999987655


Q ss_pred             cCC
Q 001224         1030 AAN 1032 (1120)
Q Consensus      1030 ~~~ 1032 (1120)
                      +++
T Consensus       339 ~kn  341 (839)
T KOG0269|consen  339 FKN  341 (839)
T ss_pred             hhc
Confidence            544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=6.5e-21  Score=207.80  Aligned_cols=248  Identities=13%  Similarity=0.205  Sum_probs=188.2

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV  443 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las  443 (1120)
                      -.+..|+|+.--+.+|||++..|.|.+||+.....                ..+..++..|+..|+++.|++ ...+|++
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r----------------nk~l~~f~EH~Rs~~~ldfh~tep~iliS  151 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR----------------NKLLTVFNEHERSANKLDFHSTEPNILIS  151 (839)
T ss_pred             eehhhcccccchhhhheeecCCCcEEEEecCcccc----------------chhhhHhhhhccceeeeeeccCCccEEEe
Confidence            35567888865556899999999999999976210                011125889999999999999 6788999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeeccccCeEEEe
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~  522 (1120)
                      ||.||+|++||++..+...   ++.+....|..|+|+|.... .++++.+.|.+++||++. .++...+.+|.++|.++.
T Consensus       152 GSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n  227 (839)
T KOG0269|consen  152 GSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN  227 (839)
T ss_pred             cCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence            9999999999999877554   67788899999999997665 899999999999999985 566788899999999999


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--  599 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  599 (1120)
                      |+|  ++.+|++||.|+.|++||+.+......... ...++..+.|-|+.+                    .+|++++  
T Consensus       228 whP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcsmv  285 (839)
T KOG0269|consen  228 WHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCSMV  285 (839)
T ss_pred             ecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhhcc
Confidence            987  568999999999999999986543322221 123445555555443                    3466655  


Q ss_pred             CCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224          600 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .|-.|+|||++..- +..++..|  ...++.++|.. |...+.+++.||+|..-..+++
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            58889999997653 34555544  45788899976 5667788888888765444433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.4e-19  Score=173.15  Aligned_cols=259  Identities=14%  Similarity=0.237  Sum_probs=192.3

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCC
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  439 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~  439 (1120)
                      +|.+-|.|+.|.+.|++ +|+++.|++|.|||.......-...               .....|.+.|..|.|.+  =|+
T Consensus        11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCccccc
Confidence            48899999999999997 9999999999999975433221100               02557999999999976  599


Q ss_pred             eEEEEECCCeEEEEEcc------CCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE----
Q 001224          440 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----  509 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~----  509 (1120)
                      .+|+++.|+++.||.-.      .+..-....++....+.|+.|.|.|....+.+++++.||.+|||+.-....+.    
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            99999999999999752      12222334467778889999999999888899999999999999976643332    


Q ss_pred             --Eee-------ccccCeEEEeeccCCC-ceEEEEEecC-----CeEEEEecCCCC----CceeeeCCCCceeEEEEcCC
Q 001224          510 --IFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       510 --~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~  570 (1120)
                        .++       .+..+-.|+.|.++.- ..+|+.|+.+     +.++||......    ...++..+..+|+.++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence              222       3556677888875542 2456666654     478889776544    23456778888999999887


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------eeEEEe-cCCCCCCcCeEEE
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF  632 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~  632 (1120)
                      -.+-+                 ..|++++.|| |+||++....                 .+..+. ...|...|..+.|
T Consensus       235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            54322                 3588899999 9999987311                 112221 2344558999999


Q ss_pred             cCCCCEEEEEECCCcEEEEEcc
Q 001224          633 NKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       633 s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      +-.|..|++.+.||.||+|...
T Consensus       297 NmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhh
Confidence            9999999999999999999653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=4e-19  Score=180.10  Aligned_cols=172  Identities=20%  Similarity=0.227  Sum_probs=140.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ...+|..+.|.+++...+|||+.|..|+||.+..+..-..          .........|..|..+|+++.|+|+|..||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            3578999999998875699999999999999876442210          000111225889999999999999999999


Q ss_pred             EEECCCeEEEEEcc--------C-----CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          443 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       443 s~~~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      +|+.+|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++.|.++++||+..|..+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999766        3     111223456889999999999999999  79999999999999999999999


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      .+..|...|..++|.+-  ++++++-+.|...+.+.+..
T Consensus       160 ~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             eccccccccceeecchh--hhhhhhhccCcccceeeeee
Confidence            99999999999998654  47999999988666665543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.2e-19  Score=178.54  Aligned_cols=300  Identities=16%  Similarity=0.221  Sum_probs=204.6

Q ss_pred             ccccccEEEEEEcC----CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          754 NLRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                      ..|..+|.+++|++    +...+++......+.+|+...+.                    +........+..++.....
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt   94 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT   94 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence            34778888999874    22234444444477777763211                    0001011112236666777


Q ss_pred             EEEccCC----CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224          830 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  904 (1120)
Q Consensus       830 l~~s~d~----~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  904 (1120)
                      ++|+-|-    -++|+|+ -|.|+|.|+.++++...+.+|...|+.+.|.|++.++|++++.|.+||+|++++..++..|
T Consensus        95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf  174 (385)
T KOG1034|consen   95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF  174 (385)
T ss_pred             EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence            7776543    3667666 7999999999999999999999999999999977899999999999999999999999887


Q ss_pred             ---cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc-------------eeeeccCCCCCC-------CCCC
Q 001224          905 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-------------RFLQIPTGRTPT-------AQSD  961 (1120)
Q Consensus       905 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------~~~~~~~~~~~~-------~~~i  961 (1120)
                         .||.+.|.++.|+.+|.+++|+|.|.++++|++...+....             +.+.....|.+.       ...|
T Consensus       175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence               56999999999999999999999999999999985322110             001111111110       0122


Q ss_pred             cEEEEccCCcEEEE-EeCCeEEEEEcC-Cceee-------------eccccCCCCCCeeEEEE--CCCCcEEEEEEcCCc
Q 001224          962 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHATF--SCDSQLVYACFLDAT 1024 (1120)
Q Consensus       962 ~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~-------------~~~~~~~h~~~v~~l~~--s~dg~~l~s~~~Dg~ 1024 (1120)
                      -++.|-  |.++++ +.++.|..|... -.+.+             ..+..  ....|+-+.|  .|-++.||.|...|.
T Consensus       255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence            222222  467777 788899999872 22221             11211  1445655555  556889999999999


Q ss_pred             EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      |++||++..+....-.    +.....+..|.  ..+|+. |+.+|+...+|++|.-||.-
T Consensus       331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            9999999887742211    22121233355  788888 79999999999999999853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=5.1e-17  Score=190.25  Aligned_cols=371  Identities=25%  Similarity=0.421  Sum_probs=269.2

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc-eeEeeceeeeccCCCCcccccccccCCC-CceEEEEE-c
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S  435 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~-s  435 (1120)
                      ....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            35569999999999999995 8888899999999998876 3321                   33322 47777777 8


Q ss_pred             CCCC-eEEEEEC-CCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEe
Q 001224          436 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF  511 (1120)
Q Consensus       436 pdg~-~las~~~-dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~  511 (1120)
                      +++. +++..+. |+.+.+|+..+ .....   .+..|...|..++|+|++.  ++++++. |+.+++|++..+..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 99999999997 44333   5788999999999999999  6777775 999999999999999999


Q ss_pred             eccccCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          512 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                      .+|...|.++.|.  +++. .+++++.|+.|++||........ .+..+.... ..                     .|+
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~  250 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS  250 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence            9999999999997  4444 55555899999999877433333 233333221 11                     455


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      +++..+++++.|+.+++|+...... +..+.  .+...+.++.|+|++..+++++.|+.+.+|+..+.. ......    
T Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~----  323 (466)
T COG2319         251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT----  323 (466)
T ss_pred             CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence            5556788999999999999987665 44443  334578899999988888889889889999765441 000000    


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (466)
T COG2319         324 --------------------------------------------------------------------------------  323 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  828 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~  828 (1120)
                          ...                                                                   |...+.
T Consensus       324 ----~~~-------------------------------------------------------------------~~~~~~  332 (466)
T COG2319         324 ----LKG-------------------------------------------------------------------HEGPVS  332 (466)
T ss_pred             ----ecc-------------------------------------------------------------------cCCceE
Confidence                000                                                                   222344


Q ss_pred             EEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEeecceeeEeec
Q 001224          829 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .+.+.+++..++.+ . |+.+.+|+.............. .+..+.+.+ + ..+.. +..++.+.+|+...........
T Consensus       333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (466)
T COG2319         333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD  409 (466)
T ss_pred             EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence            44442222344444 3 6677778777665222222222 288899988 7 55554 7899999999999888777766


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      .+...+....+++++..+++++.++.+++|+...
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            5547889999999999999999999999999887

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=1.4e-19  Score=178.10  Aligned_cols=258  Identities=19%  Similarity=0.269  Sum_probs=195.0

Q ss_pred             CCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-C
Q 001224          363 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G  438 (1120)
Q Consensus       363 h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g  438 (1120)
                      |...-..++|+-|   +..++|+|+.-|.|+|.|+.+++....                   +.+|.+.|+.+.|.|+ .
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence            6677788888764   455788888999999999999887653                   7899999999999995 5


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE---------
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY---------  509 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~---------  509 (1120)
                      ++|+++|.|..|++|++++..++..+.-+.||.+.|.++.|+++|.  +++++|.|.+|++|++...+...         
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            8999999999999999999999987777889999999999999999  79999999999999998432100         


Q ss_pred             -------------------EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEE-EEc
Q 001224          510 -------------------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS  568 (1120)
Q Consensus       510 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s  568 (1120)
                                         +-.-|...|.|+.|..    +++++-+.++.|..|..... +.......+....+-+ .|.
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence                               1124667777777643    58999999999999976321 1111111111111111 000


Q ss_pred             CCCCeEEecccccceeE--EEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224          569 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTN  644 (1120)
Q Consensus       569 ~~g~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  644 (1120)
                               .....++.  .+++|-++.|+.|...|.|++||++...+.  .++........|...+|+.||..|+...+
T Consensus       303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence                     11123443  355677789999999999999999887652  33433444567899999999999999999


Q ss_pred             CCcEEEEEcc
Q 001224          645 DNGIKILATS  654 (1120)
Q Consensus       645 dg~i~iwd~~  654 (1120)
                      |++|.-||..
T Consensus       374 d~~Vwrwdrv  383 (385)
T KOG1034|consen  374 DGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEEee
Confidence            9999999853

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=4.8e-19  Score=182.96  Aligned_cols=293  Identities=12%  Similarity=0.179  Sum_probs=212.5

Q ss_pred             eeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceE-EEeccCceEEEeeecccccCCCCcccccc
Q 001224          723 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       723 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                      +..++....+++||+............+     ....+.++.|+.....+ +..+.|..+++|.-..             
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-------------   66 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-------------   66 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence            4455556789999998765544443322     22348888888776522 3344567888886311             


Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcE
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  880 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~  880 (1120)
                             .++++......   ....-.|++......|+++|+ .+.|+|||++...+.+.++.|...|++|.+.- ...+
T Consensus        67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey  135 (673)
T KOG4378|consen   67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY  135 (673)
T ss_pred             -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence                   12221111111   222445666556668999988 89999999997777888999999999999998 7789


Q ss_pred             EEEEeCCCcEEEEEeecceeeEeeccccc-ceEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224          881 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       881 lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~  958 (1120)
                      ||+++..|.|.|..+.++.....|....+ .|.-+.|++..+. |.+++.+|.|.+||+..-    .........|..  
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~----sp~~~~~~~HsA--  209 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM----SPIFHASEAHSA--  209 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC----CcccchhhhccC--
Confidence            99999999999999999887777765534 4558899998765 568899999999999873    234444555554  


Q ss_pred             CCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc-e
Q 001224          959 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1035 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~-~ 1035 (1120)
                       +...+||+|....|++  |.|..|.+||.........+..   ..+.+.++|+++|.+|++|+..|.|..||+...+ +
T Consensus       210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence             6788999997766555  7999999999987776666653   6689999999999999999999999999997544 3


Q ss_pred             eeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224         1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus      1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
                      +..+.       .|... |.  .++|-|.
T Consensus       286 v~v~s-------ah~~s-Vt--~vafq~s  304 (673)
T KOG4378|consen  286 VAVRS-------AHDAS-VT--RVAFQPS  304 (673)
T ss_pred             ceEee-------ecccc-ee--EEEeeec
Confidence            43332       22233 55  7777773

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=3.4e-19  Score=178.50  Aligned_cols=175  Identities=25%  Similarity=0.389  Sum_probs=144.2

Q ss_pred             cceeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          355 KTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       355 ~~~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      .+.+.++ +|+..=++++|||-..--|++|..-+.|++|...+|.-...                ..-+.+|+..|-.++
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq  264 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ  264 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence            3344444 59999999999993322388888889999999988754321                012667999999999


Q ss_pred             EcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---CceeE
Q 001224          434 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY  509 (1120)
Q Consensus       434 ~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---~~~~~  509 (1120)
                      ||| ....||+||.||+|+|||++.+....... .+.|.+.|+-|.|+.+-.  +|++|++||+++|||++.   ++++.
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence            999 56789999999999999999985433332 478999999999998888  899999999999999984   67889


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  549 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  549 (1120)
                      .|+.|..+|+++.|+|..+ ..|++++.|..|.+||+...
T Consensus       342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeecc
Confidence            9999999999999998776 57888889999999998753

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=2.3e-16  Score=184.80  Aligned_cols=368  Identities=23%  Similarity=0.395  Sum_probs=269.7

Q ss_pred             ecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeecccc-CeEEEeeccCCCce-EEEEEec-CCeEE
Q 001224          467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK  542 (1120)
Q Consensus       467 l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i~  542 (1120)
                      +..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            567899999999999999  68888899999999998887 6777776443 67777764 55555 5555444 99999


Q ss_pred             EEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeEEEec
Q 001224          543 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       543 iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      +|+... ......+..|...+..+.++|++.                     .+++++. |+.+++|+...+..+..+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeecc
Confidence            999987 556666666766666666666654                     6777775 99999999999888888876


Q ss_pred             CCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCcchhhh-hcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224          621 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  698 (1120)
Q Consensus       621 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1120)
                      +  ...+.+++|+|++. .+++++.|+.|++||...+ .... .+.                                  
T Consensus       197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~----------------------------------  239 (466)
T COG2319         197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLS----------------------------------  239 (466)
T ss_pred             C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecC----------------------------------
Confidence            4  44799999999998 5555588999999965422 0000 000                                  


Q ss_pred             cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224          699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  778 (1120)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  778 (1120)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (466)
T COG2319         240 --------------------------------------------------------------------------------  239 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224          779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  857 (1120)
Q Consensus       779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~  857 (1120)
                                                                 +|.... ...|++++.++++++ |+.+++|+......
T Consensus       240 -------------------------------------------~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         240 -------------------------------------------GHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             -------------------------------------------CCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence                                                       022221 115666665666555 77777777765443


Q ss_pred             -eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec--ccccceEEEEEccCCCEEEEE-eCCCCEE
Q 001224          858 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC  933 (1120)
Q Consensus       858 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~  933 (1120)
                       ...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+.+.
T Consensus       276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence             344456788899999999 77788879999999999988877666665  888889999994333556555 6889999


Q ss_pred             EEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC
Q 001224          934 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus       934 iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
                      +|++....     ........    ..+..+.+++ ...+..  ..++.+.+|+............  +...+....+++
T Consensus       355 ~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  422 (466)
T COG2319         355 LWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG--HTSRVTSLDFSP  422 (466)
T ss_pred             eeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC--CCCcEEEEEECC
Confidence            99998854     11111111    1267888888 544443  4788999999999888776652  127899999999


Q ss_pred             CCcEEEEEEcCCcEEEEEcCC
Q 001224         1012 DSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      ++.++++++.++.+++|+..+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         423 DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCcEEEEecCCCcEEEEeccC
Confidence            999999999999999999988

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.3e-18  Score=178.81  Aligned_cols=315  Identities=12%  Similarity=0.142  Sum_probs=222.7

Q ss_pred             CCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC----CceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224          503 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGF  578 (1120)
Q Consensus       503 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~~~  578 (1120)
                      .+-......+-+..+|++++|+|..+..++++|..-|.|-+||+.+.+    ....+..|..+|.++.|+|...      
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~------  247 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT------  247 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh------
Confidence            333444555668899999999999988899999999999999996432    3445667777788888877765      


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224          579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                                    ..+++.|.||+|+.-|++++.....+........+.++.|+.+...++.+..-|.+.+||.+++..
T Consensus       248 --------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s  313 (498)
T KOG4328|consen  248 --------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS  313 (498)
T ss_pred             --------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence                          579999999999999998775444443322333567788888888888888888999999998865


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      ....+.-|...+...      ++.|.                                  ...++++++.|++.++||+.
T Consensus       314 ~~~~~~lh~kKI~sv------~~NP~----------------------------------~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  314 EYENLRLHKKKITSV------ALNPV----------------------------------CPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             cchhhhhhhccccee------ecCCC----------------------------------CchheeecccCcceeeeehh
Confidence            555555554432221      23332                                  25678999999999999998


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                      ........ .+..  ..|...|.++.|||++-.|++.+.|..|+|||..-              +.-|+...+.......
T Consensus       354 ~l~~K~sp-~lst--~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~  416 (498)
T KOG4328|consen  354 QLRGKASP-FLST--LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR  416 (498)
T ss_pred             hhcCCCCc-ceec--ccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCc
Confidence            76655431 1111  34899999999999988899999999999998620              1122333332222111


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC-CeEE-EEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                      .+  .--...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|.|+..|.|+||.-
T Consensus       417 t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  417 TG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            00  011233467999999999998 67899999998887777543332 4554 4799944446666677889998864


Q ss_pred             e
Q 001224          896 R  896 (1120)
Q Consensus       896 ~  896 (1120)
                      .
T Consensus       495 k  495 (498)
T KOG4328|consen  495 K  495 (498)
T ss_pred             C
Confidence            3

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=5.4e-19  Score=181.23  Aligned_cols=196  Identities=16%  Similarity=0.241  Sum_probs=157.6

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeee------------------cccccCeEEEEEcCCCCceEEEEecCCCcEE
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  498 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l------------------~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~  498 (1120)
                      -|+|+|.|+.|..|.|||+.--..+.+...|                  .+|++.|.+++|+..-+. +|++||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            4789999999999999998643323222222                  379999999999998877 899999999999


Q ss_pred             EEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224          499 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  578 (1120)
Q Consensus       499 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~  578 (1120)
                      +||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.|...      
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------  342 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------  342 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence            99999999999999999999999998764 48999999999999999985332221112233455555555443      


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224          579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                    ..++++..||+|+-+|++.. +++.+++.|..  .|.++++++ ...++++++.|+.|++|++...
T Consensus       343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence                          46788889999999999875 88999988765  899999998 4567899999999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.6e-18  Score=179.13  Aligned_cols=211  Identities=17%  Similarity=0.277  Sum_probs=166.9

Q ss_pred             CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224          767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG  845 (1120)
Q Consensus       767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg  845 (1120)
                      ....++++++..+.|+|||++                       .+++...+.+  |...|+++.++-...|||+++ .|
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gG  143 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGG  143 (673)
T ss_pred             hcceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCC
Confidence            344778999999999999873                       2234444555  999999999999999999999 68


Q ss_pred             cEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe-ecccccceEEEEEccCC-CE
Q 001224          846 KISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NV  922 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~  922 (1120)
                      .|.|..+.++....+|... ...|.-+.|+|....+|.+++++|.|.+||+.....+.. ...|..+...|+|+|.. .+
T Consensus       144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence            8999999998887777644 345679999996667888999999999999987665544 46799999999999975 56


Q ss_pred             EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee-eeccccCCC
Q 001224          923 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQWVPRES 1000 (1120)
Q Consensus       923 l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~-~~~~~~~~h 1000 (1120)
                      |++.|.|..|.+||+.....  ..++...       .+...++|+++|.+|++| ..|.|..||++..+. +...  ..|
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s--~~~l~y~-------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah  292 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQAS--TDRLTYS-------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAH  292 (673)
T ss_pred             EEEecccceEEEeecccccc--cceeeec-------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe--eec
Confidence            78999999999999986322  2222211       256899999999999997 889999999986543 3333  378


Q ss_pred             CCCeeEEEECCCC
Q 001224         1001 SAPITHATFSCDS 1013 (1120)
Q Consensus      1001 ~~~v~~l~~s~dg 1013 (1120)
                      ...|++++|-|..
T Consensus       293 ~~sVt~vafq~s~  305 (673)
T KOG4378|consen  293 DASVTRVAFQPSP  305 (673)
T ss_pred             ccceeEEEeeecc
Confidence            8899999997654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.6e-18  Score=177.95  Aligned_cols=168  Identities=20%  Similarity=0.251  Sum_probs=132.5

Q ss_pred             eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      .+|.||.+.|+|++|+.+|.  +|++||+|-.+.|||.-..+.++.+ .||.+.|.++.|.|..+...+++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36899999999999999999  8999999999999999988888776 68999999999999988899999999999999


Q ss_pred             EecCCCCC----------ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001224          544 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  613 (1120)
Q Consensus       544 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  613 (1120)
                      +|+...+.          ...+..|...|..++..|++.                    +.+.++++||+|+-+|++...
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence            99985322          223344455555555555554                    678999999999999998632


Q ss_pred             e-eEEE-------ecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEcc
Q 001224          614 L-LTSI-------DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       614 ~-~~~~-------~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      . -...       ..........|+.++| +..+|++|+.|-..++||.+
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            1 1110       1111123467899999 67789999999999999964

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=1.4e-16  Score=166.59  Aligned_cols=506  Identities=14%  Similarity=0.142  Sum_probs=284.7

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      .|...|.|+.|+.... ++.+ +.|..+.+|.-.+........+.     ....+..     -|-.+- +..=-.....+
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p-----~df~pt~-----~h~~~r-s~~~g~~~d~~   78 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP-----DDFVPTD-----MHLGGR-SSGGGKGSDTL   78 (737)
T ss_pred             ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC-----cccCCcc-----cccccc-ccCCCCCcceE
Confidence            4667778999999988 3444 45566655554333222111100     0000000     010000 00000134578


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                      +.++.||.+.|-+-...- -+   ....|.+.|.+-.|+|||.  -|+++|.||.|++|. ++|....++.....+|.|+
T Consensus        79 ~i~s~DGkf~il~k~~rV-E~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSARV-ER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             EEEcCCceEEEecccchh-hh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            888999999888755421 22   5778999999999999999  599999999999999 8888877777778899999


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      +|.|+.+ ..+++.+  +.+.+=-+.....+.....|.+-|.+                     +.|++..+.+++|++|
T Consensus       152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~---------------------~~W~~~s~lI~sgGED  207 (737)
T KOG1524|consen  152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLS---------------------LSWSTQSNIIASGGED  207 (737)
T ss_pred             EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEE---------------------eecCccccceeecCCc
Confidence            9987765 4555544  45555555554555555666555544                     4555555689999999


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  681 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1120)
                      -..++||. .|..+..-..|..  +|++++|.|+ +.++.++.+ +.|+=                              
T Consensus       208 ~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~n-t~R~~------------------------------  252 (737)
T KOG1524|consen  208 FRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSYN-TARFS------------------------------  252 (737)
T ss_pred             eeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeeee-eeeec------------------------------
Confidence            99999997 4555555555544  7999999999 666665542 33210                              


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224          682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  761 (1120)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  761 (1120)
                                                                                              ....+.|.
T Consensus       253 ------------------------------------------------------------------------~p~~GSif  260 (737)
T KOG1524|consen  253 ------------------------------------------------------------------------SPRVGSIF  260 (737)
T ss_pred             ------------------------------------------------------------------------CCCccceE
Confidence                                                                                    01346788


Q ss_pred             EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224          762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  841 (1120)
Q Consensus       762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~  841 (1120)
                      .++||+||..+++++..|.+.+=-.-..                      ++             +       -+.+=++
T Consensus       261 nlsWS~DGTQ~a~gt~~G~v~~A~~ieq----------------------~l-------------~-------~~n~~~t  298 (737)
T KOG1524|consen  261 NLSWSADGTQATCGTSTGQLIVAYAIEQ----------------------QL-------------V-------SGNLKAT  298 (737)
T ss_pred             EEEEcCCCceeeccccCceEEEeeeehh----------------------hh-------------h-------hccceeE
Confidence            9999999999999999988765221000                      00             0       0001111


Q ss_pred             Ee-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCC
Q 001224          842 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  920 (1120)
Q Consensus       842 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~  920 (1120)
                      .. ...|.+-|+.++.+ ..+. ....|...++..  + +|+++. ...|++|.-........+.+....+.-+.-+. .
T Consensus       299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k  371 (737)
T KOG1524|consen  299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K  371 (737)
T ss_pred             eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence            11 34466666665443 2222 344566666554  2 333332 23677776554443344444433332111111 1


Q ss_pred             CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEc-CCceeeeccc
Q 001224          921 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQWV  996 (1120)
Q Consensus       921 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~-~d~~v~i~d~-~~~~~~~~~~  996 (1120)
                      .+++  ....++.+|..+......    ..++|...  .....-..|-....|+.  . ....+.+||. .+|+....-.
T Consensus       372 ~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk  443 (737)
T KOG1524|consen  372 YFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK  443 (737)
T ss_pred             heEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence            1222  222345555544411100    00111110  01111122323334555  2 3346788998 6666543322


Q ss_pred             cCCCCCCeeEEEEC----CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEE
Q 001224          997 PRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus       997 ~~~h~~~v~~l~~s----~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
                      .-.|...|..++..    ++.+.++--...+.++|=.+.+.-...++-     .-|   .-|.  .++|+.  -.-++.|
T Consensus       444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiLcg  511 (737)
T KOG1524|consen  444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNILCG  511 (737)
T ss_pred             ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--ccceeee
Confidence            12356667666664    355667777777777776654432221111     111   1123  788884  4567778


Q ss_pred             eCCCcEEEEecCCCC
Q 001224         1073 LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1073 ~~Dg~v~vW~~~~~~ 1087 (1120)
                      -.|+.+.||-.++.-
T Consensus       512 lqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  512 LQDTCFSVWYYPNEV  526 (737)
T ss_pred             eccceEEEEEcCCcc
Confidence            889999999877643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.4e-18  Score=199.05  Aligned_cols=258  Identities=14%  Similarity=0.182  Sum_probs=200.3

Q ss_pred             eccCCCCceEEEEecCCCe---EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          360 TLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~---lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      .+.-...-+.++|.+.|..   +||.|..||.|.+||...-.  ..          ..... ......|++.|..+.|++
T Consensus        60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~----------~~~~~-la~~~~h~G~V~gLDfN~  126 (1049)
T KOG0307|consen   60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--AN----------ASEEV-LATKSKHTGPVLGLDFNP  126 (1049)
T ss_pred             cccccccceeeeecccCCCccceeeccccCCceEEecchhhc--cC----------cchHH-HhhhcccCCceeeeeccc
Confidence            3345567789999998876   69999999999999987520  00          00000 113667999999999999


Q ss_pred             CC-CeEEEEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224          437 DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       437 dg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      .+ ++||+|+.||.|.|||+..-+.   .+.+.  .-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..
T Consensus       127 ~q~nlLASGa~~geI~iWDlnn~~t---P~~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~  202 (1049)
T KOG0307|consen  127 FQGNLLASGADDGEILIWDLNKPET---PFTPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSD  202 (1049)
T ss_pred             cCCceeeccCCCCcEEEeccCCcCC---CCCCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccccccc
Confidence            55 5999999999999999987432   11221  24568999999988777 899999999999999999988877766


Q ss_pred             ccc--CeEEEeeccCCCceEEEEEecCC--eEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          514 HEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       514 h~~--~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                      |.+  .+..+.|||+...+++++...|+  .|.+||++... ....+..|...|.++.|++.+.                
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~----------------  266 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP----------------  266 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence            654  46788999987654444444443  69999998644 4556678888888888877664                


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  656 (1120)
                          .+|++++.|+.|.+||..+++.+..+...+  ..+..+.|.|.. ..+++++-||.|.|+.+...
T Consensus       267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ----hhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence                578999999999999999999999998643  479999999954 48889999999999998765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=8.8e-17  Score=158.06  Aligned_cols=228  Identities=14%  Similarity=0.158  Sum_probs=167.4

Q ss_pred             CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224          767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  846 (1120)
Q Consensus       767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~  846 (1120)
                      |+..++++.+.+.-|.+||.-+++....-..        +|.            ...-....+++|+|||.+|.+|....
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~--------ydh------------~de~taAhsL~Fs~DGeqlfaGykrc  180 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRA--------YDH------------QDEYTAAHSLQFSPDGEQLFAGYKRC  180 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhh--------hhh------------HHhhhhheeEEecCCCCeEeecccce
Confidence            5667788888888888887633322111100        000            00123355899999999999999999


Q ss_pred             EEEEEcC-CCceee---ee----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEcc
Q 001224          847 ISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  918 (1120)
Q Consensus       847 i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~  918 (1120)
                      |++||+. .|..-.   ++    .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+..+..+-+|.+.|+.+.|.+
T Consensus       181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence            9999993 333211   11    123556899999998888999999999999999888899999999999999999999


Q ss_pred             CCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEE--EEccCCcEEEEE-eCCeEEEEEcCC-ceeee
Q 001224          919 ALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV--QFHQDQIHFLVV-HETQLAIFETTK-LECVK  993 (1120)
Q Consensus       919 d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~fspdg~~la~~-~d~~v~i~d~~~-~~~~~  993 (1120)
                      ||+.|.+|+. |-.|..||++....    ++-.+..|...  .-..+  ...|+|++|++| .||.|++||+++ +..+.
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~--TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGD--TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS  334 (406)
T ss_pred             CcCeecccccCCCeEEEEeehhccc----hhhhhhhhccC--ccceEEEecCCCCceeeccCCCccEEEEecCCCCCccc
Confidence            9999999886 67799999987443    22223333221  12334  446889999997 999999999998 66555


Q ss_pred             ccccCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224          994 QWVPRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus       994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
                      .+.  .|...+..+++.|-=..+++++..
T Consensus       335 v~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  335 VTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccc--cccccccceecCcccceeeeccCc
Confidence            443  678999999999997778877643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=8.8e-17  Score=163.30  Aligned_cols=301  Identities=16%  Similarity=0.183  Sum_probs=213.0

Q ss_pred             cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ..++..+.|.+++. .+++++.|..|++|.++.........     .+         .....+.  .|...|+++.|+|+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~-----~V---------~y~s~Ls--~H~~aVN~vRf~p~   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM-----KV---------EYLSSLS--RHTRAVNVVRFSPD   76 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce-----eE---------EEeeccc--CCcceeEEEEEcCC
Confidence            46788889988776 89999999999999986543221110     00         0111122  39999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcC--------C--------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          836 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      |..+|+|+ +|.|.+|-..        +        +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence            99999999 6899999765        2        334456788999999999999 9999999999999999999999


Q ss_pred             eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccccee---eeccCCCC------------CCCCCCcE
Q 001224          899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR  963 (1120)
Q Consensus       899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~~~~------------~~~~~i~~  963 (1120)
                      .+...+.+|...|..++|.|-++++++-+.|...+++.+.........-   +....++.            ....-...
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR  235 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR  235 (434)
T ss_pred             eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence            9999999999999999999999999999999977777765532211110   00000000            00012367


Q ss_pred             EEEccCCcEEEEE-----eCCe-----EEEEEcCCce-eeeccccCCCCCCeeEEEECC------------------CCc
Q 001224          964 VQFHQDQIHFLVV-----HETQ-----LAIFETTKLE-CVKQWVPRESSAPITHATFSC------------------DSQ 1014 (1120)
Q Consensus       964 ~~fspdg~~la~~-----~d~~-----v~i~d~~~~~-~~~~~~~~~h~~~v~~l~~s~------------------dg~ 1014 (1120)
                      ++|+|||.+|++.     ..+.     .++|+-...+ ....+  ..-..+...+.|+|                  -+-
T Consensus       236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence            8999999999982     2233     3455433211 11111  12244555555554                  122


Q ss_pred             EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1015 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1015 ~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+|.++ -..|+|||.++.++++.+...++.+       +.  .++|++ ||..|+..|.||-..+-.+...|
T Consensus       314 vfaiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence            345554 5689999999999998877444444       44  899999 79999999999988877776655

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=2e-17  Score=158.01  Aligned_cols=307  Identities=14%  Similarity=0.202  Sum_probs=195.5

Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-CCCCceeEEEEcCCCCeEEecccccceeE
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGV  585 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~i~~  585 (1120)
                      +...+++|.+.|++++|..+   .+|++|..-|.|++|++.+......+. .+...++.+...|++.             
T Consensus         6 P~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-------------   69 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-------------   69 (323)
T ss_pred             CeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-------------
Confidence            45667789999999998433   469999999999999999988877777 4566777777777654             


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCcchhhhhcc
Q 001224          586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  664 (1120)
                               +.+-+.|+.+.+|++..+..+..-.     ..++++.|.+..  +...+... ..-.++-+.... .+...
T Consensus        70 ---------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D  132 (323)
T KOG0322|consen   70 ---------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQD  132 (323)
T ss_pred             ---------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhc
Confidence                     8899999999999998765443322     123334443311  11111000 001111110000 00000


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224          665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  744 (1120)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  744 (1120)
                      +.                                                             ..-.+++-+        
T Consensus       133 ~g-------------------------------------------------------------~~tqv~i~d--------  143 (323)
T KOG0322|consen  133 GG-------------------------------------------------------------DTTQVQIAD--------  143 (323)
T ss_pred             cC-------------------------------------------------------------ccceeEccC--------
Confidence            00                                                             000000000        


Q ss_pred             cceeeccCCccccccEEEEEEcC-CCc--eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224          745 QCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  821 (1120)
Q Consensus       745 ~~~~~~~~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~  821 (1120)
                            -+..+..+.+.+..+.. +++  .++++.++|.+.+||+..++.             +.+......+....  .
T Consensus       144 ------d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~~~~~~kv~~~~--a  202 (323)
T KOG0322|consen  144 ------DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQLPQSSKVESPN--A  202 (323)
T ss_pred             ------chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-------------eeccccccccccch--h
Confidence                  00011223333333221 222  356677789999999865421             11111111111111  2


Q ss_pred             CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      .|..+|.++.+.+.-..=++|+ +..+..|++..  +.+  ..........|..+.+-| |++++|+++.|+.||||+.+
T Consensus       203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEec
Confidence            3889999999987665666666 67788888763  222  122233355688999999 99999999999999999999


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      +...+..++.|++.|++++|+||...+|.++.|++|-+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999999999986

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=2.6e-16  Score=154.98  Aligned_cols=385  Identities=14%  Similarity=0.169  Sum_probs=239.6

Q ss_pred             EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      -.+|||+|+|+|+++.- .+.|-|.++-+..+    +--.-+.|..+.|..|.-+ .+.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            46899999999999865 78888888755333    2122467889999998875 566778889999999999998888


Q ss_pred             eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc------------
Q 001224          511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF------------  578 (1120)
Q Consensus       511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~------------  578 (1120)
                      +.....++.+++|+|++. +.|.+...|-.|.+|.+.+.... -+..+...+..++|.|||+......            
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            988888999999966542 56667777999999999875443 3344455678999999998332111            


Q ss_pred             ------------cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          579 ------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       579 ------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                                  ..-..+.+.|+|||+.|++         ||---.-.+..+.  .+ -.+..++|+|.+++|++|+.|+
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~-lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RG-LGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee--ec-cceeEEEeccccceEEeeccch
Confidence                        1123456889999887775         4422111111221  11 1477899999999999999999


Q ss_pred             cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224          647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  726 (1120)
Q Consensus       647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  726 (1120)
                      .+|+.+--+- +.+..+-.. .                                                         +
T Consensus       233 ~lrvlnh~tW-k~f~eflhl-~---------------------------------------------------------s  253 (447)
T KOG4497|consen  233 MLRVLNHFTW-KPFGEFLHL-C---------------------------------------------------------S  253 (447)
T ss_pred             hhhhhceeee-eehhhhccc-h---------------------------------------------------------h
Confidence            9998765433 112111100 0                                                         0


Q ss_pred             cCCCc-ceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224          727 ESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       727 ~~d~~-i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                      -.|.+ ..++. +.         ...    -.-...++.|.|..-         ...+|......+....   ....+..
T Consensus       254 ~~dp~~~~~~k-e~---------~~~----~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~---~pv~~~~  307 (447)
T KOG4497|consen  254 YHDPTLHLLEK-ET---------FSI----VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQM---TPVKVHK  307 (447)
T ss_pred             ccCchhhhhhh-hh---------cch----hhhcccccccCCCcc---------ccCccccchhhhhhhh---cceeeec
Confidence            00000 00000 00         000    001112333443321         0011111000000000   0000000


Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeC---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEE
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA  882 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la  882 (1120)
                      ..+.+.      .+  +..-.+.-++|++|..++++-.|   +.+.+||+...+....+. ...+|.+..|+| +...|+
T Consensus       308 lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~  377 (447)
T KOG4497|consen  308 LKPPTD------FP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLV  377 (447)
T ss_pred             ccCCCC------CC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEE
Confidence            000011      11  13455778999999999999886   569999998766554443 566899999999 777777


Q ss_pred             EEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCC
Q 001224          883 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  931 (1120)
Q Consensus       883 sg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  931 (1120)
                      .+.....+++|......++.. .+..-.|..+.|..+|..++-.+.|.-
T Consensus       378 vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  378 VCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            777777899998765444433 333467999999999999999998874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=5.4e-17  Score=159.54  Aligned_cols=273  Identities=16%  Similarity=0.270  Sum_probs=187.8

Q ss_pred             eEEEEEcCCCCceEEEEecCCCcEEEEECCCC-------ce-----eEEee-ccccCeEEEeec-----cCCCceEEEEE
Q 001224          474 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPH-----HKENIQFIFST  535 (1120)
Q Consensus       474 V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-------~~-----~~~~~-~h~~~v~~~~~~-----~~~~~~~l~s~  535 (1120)
                      ...+.|+|||.  .|++-+.|..+++|++...       ..     ..+++ .....|...||.     ..++..++++.
T Consensus        52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45679999999  7999999999999998521       11     11111 123456666764     23455688999


Q ss_pred             ecCCeEEEEecCCCCCceeeeCCCC-----ceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC-
Q 001224          536 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-  609 (1120)
Q Consensus       536 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-  609 (1120)
                      +.+.-|++||.-+++....+..-..     ...+++|+|||.                     +|++| ....|+++|+ 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfaG-ykrcirvFdt~  187 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFAG-YKRCIRVFDTS  187 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEeec-ccceEEEeecc
Confidence            9999999999999887766654321     334556666665                     55554 4678999999 


Q ss_pred             CCCceeEEEe--c---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCccc
Q 001224          610 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  683 (1120)
Q Consensus       610 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1120)
                      +.|+.-..+.  .   .+....+.+++|+| +.+.+++|+....+-|+.-... .++..                     
T Consensus       188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l---------------------  245 (406)
T KOG2919|consen  188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL---------------------  245 (406)
T ss_pred             CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence            5554322221  1   12234577899999 5668888888777666643222 00000                     


Q ss_pred             chhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEE
Q 001224          684 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  763 (1120)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l  763 (1120)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (406)
T KOG2919|consen  246 --------------------------------------------------------------------------------  245 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224          764 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  843 (1120)
Q Consensus       764 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s  843 (1120)
                                                                            +  .+|.+.|+.+.|.+||+.|.+|+
T Consensus       246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence                                                                  0  12677777888888888888877


Q ss_pred             --CCcEEEEEcCC-CceeeeecCCCC-CeEE--EEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEE
Q 001224          844 --GGKISLFNMMT-FKTMATFMPPPP-AATF--LAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF  916 (1120)
Q Consensus       844 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~  916 (1120)
                        +..|-.||++. ...+..+..|.. .=..  ....| ++++||+|+.||.|++||+.+ +..+..+..|+..|+.+++
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence              67788888864 344555555544 2223  34457 889999999999999999998 7778888889999999999


Q ss_pred             ccCCCEEEEEeCC
Q 001224          917 SHALNVLVSSGAD  929 (1120)
Q Consensus       917 s~d~~~l~s~s~D  929 (1120)
                      +|--..+|+++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9998888887754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=3.2e-17  Score=165.37  Aligned_cols=216  Identities=15%  Similarity=0.277  Sum_probs=166.0

Q ss_pred             cccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCcee----eeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224          419 AALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  493 (1120)
Q Consensus       419 ~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~  493 (1120)
                      .-+..||+++|..++|+| +...||+||.|.+|.||.+..+...    .....|.||...|.-|+|.|.... +|++++.
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~  152 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGS  152 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccC
Confidence            335889999999999999 8889999999999999998755432    345679999999999999999887 8999999


Q ss_pred             CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCC-ceeEEEEcCCCC
Q 001224          494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGT  572 (1120)
Q Consensus       494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~g~  572 (1120)
                      |.+|.+||+.+|+.+.++. |...|.+++|+  .||.+|++.+.|+.||+||.++++....-..|.+ ......|-.+| 
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g-  228 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG-  228 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC-
Confidence            9999999999999999988 99999999985  5668999999999999999998877665544433 23333444444 


Q ss_pred             eEEecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEE-EEC
Q 001224          573 RTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAV-STN  644 (1120)
Q Consensus       573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~  644 (1120)
                                          . +++.+    .+..+-+||..+-+.   ...+...   ..|.---|.+|...+.. |-.
T Consensus       229 --------------------~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKG  284 (472)
T KOG0303|consen  229 --------------------K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKG  284 (472)
T ss_pred             --------------------c-eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecC
Confidence                                3 44432    578899998765443   3333322   34555567888777654 556


Q ss_pred             CCcEEEEEccCcchhhhhc
Q 001224          645 DNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       645 dg~i~iwd~~~~~~~~~~~  663 (1120)
                      |+.||.|.+.+....+..+
T Consensus       285 D~~IRYyEit~d~P~~hyl  303 (472)
T KOG0303|consen  285 DSSIRYFEITNEPPFVHYL  303 (472)
T ss_pred             CcceEEEEecCCCceeEEe
Confidence            9999999998774334433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.7e-16  Score=168.97  Aligned_cols=575  Identities=14%  Similarity=0.157  Sum_probs=318.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-----
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-----  437 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-----  437 (1120)
                      |...-.++.|+|.|  |+|.|+. ..|.|-|..+-+.+.                   .+..|...|+.+.|+|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence            33446788999999  7888875 578888988877765                   36678999999999872     


Q ss_pred             -C------CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEecCCCcEEEEECCCCce
Q 001224          438 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       438 -g------~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                       +      -+||++...|.|.+||...+..+.   .+..|.++|..++|-+.   .+. +|+.-....+|.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence             1      257778888999999999887554   57789999999998653   333 566666678999999999999


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-------eEEec--c
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F  578 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~~~~~--~  578 (1120)
                      ............++.+.|-...++.+.++ .|.+.+-+.-.....      ......+.+..+-.       ....|  +
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEcc-CceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence            98887666667777776655544445444 566655543321110      00001111111100       00000  0


Q ss_pred             ccc--------ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001224          579 RKR--------SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI  648 (1120)
Q Consensus       579 ~~~--------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i  648 (1120)
                      +..        ....++|+|.-+.++-..-...+.++|++-..++.....+.+  .+.-+.+-|++  ..|++.-.||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence            000        011256677666666666678899999999888888876655  34446676654  579999999999


Q ss_pred             EEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC
Q 001224          649 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  728 (1120)
Q Consensus       649 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  728 (1120)
                      .+|-.+......+.-..+-.                                                            
T Consensus       299 tirvrk~~~~~f~~~~~~l~------------------------------------------------------------  318 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNASLS------------------------------------------------------------  318 (1062)
T ss_pred             EEEEeeccCccccccchhhc------------------------------------------------------------
Confidence            99975543111111100000                                                            


Q ss_pred             CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC-CceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224          729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  807 (1120)
Q Consensus       729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~  807 (1120)
                            +|+..     ++..+.   .-.+..+......|. ...++..-++|...+|.+..+....++......-..-+|
T Consensus       319 ------~dl~~-----Q~~~vr---~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~  384 (1062)
T KOG1912|consen  319 ------MDLGE-----QVHVVR---PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD  384 (1062)
T ss_pred             ------ccccc-----ceEEEe---echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence                  00000     000000   001111112222222 223334444555556655433222211110000000000


Q ss_pred             CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224          808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  885 (1120)
Q Consensus       808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  885 (1120)
                      ......         .-....-+.+|.||.    -+.|.  +++--+..........  .+... ...-|    ++|.|+
T Consensus       385 f~~~~~---------~v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~p--~~n~~-~~~~p----LvAvGT  444 (1062)
T KOG1912|consen  385 FNLSTK---------LVGKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVENDP--GGNTP-AGTVP----LVAVGT  444 (1062)
T ss_pred             ccCcee---------ehhhccccchhhcCC----CCCCceeeecccCcccceeecCC--CCCcc-ceeee----eEEeec
Confidence            000000         000000011111110    00011  0110111111111111  11111 11123    889999


Q ss_pred             CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE---------EEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224          886 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV---------SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       886 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~---------s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      +.|+|.++|+.++...+.+..|.+.|.++.|--...++-         +++.-+.+.|-|+.+|.....+-++..     
T Consensus       445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~-----  519 (1062)
T KOG1912|consen  445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP-----  519 (1062)
T ss_pred             CCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC-----
Confidence            999999999999999999999999999999975544332         222234577889998765433322322     


Q ss_pred             CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCC-eeEEEEC-CCC----------------cEEE
Q 001224          957 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS-CDS----------------QLVY 1017 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~-v~~l~~s-~dg----------------~~l~ 1017 (1120)
                      ...+|+.+..|.-|+||++. .+.-+.+||+++..+++....   .-+ |+.+.|+ |.-                +..+
T Consensus       520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv  596 (1062)
T KOG1912|consen  520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV  596 (1062)
T ss_pred             CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence            23689999999999999996 888999999988877665432   334 8888888 321                1233


Q ss_pred             EEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC------CCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1018 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVS------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1018 s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~------~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ..+  +..+++.+......        ..+|.+      ........++|-   +..|+.|..+|.+.+||+....
T Consensus       597 ~ds--~es~~~~~~~~a~~--------~sdgsq~~~a~esfafal~~mAwk---~d~lv~GD~~GNl~~WDlg~R~  659 (1062)
T KOG1912|consen  597 LDS--VESRIYHITLSALV--------VSDGSQVNTAWESFAFALCAMAWK---DDILVVGDVEGNLVVWDLGRRQ  659 (1062)
T ss_pred             ecc--ccchheehhhhhhh--------hccccchhhHHHHHHHHHHhhhcc---CCeeEeecccCceeEEeccccc
Confidence            332  22233332211111        011100      000112246664   5799999999999999975543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=7.9e-17  Score=162.59  Aligned_cols=244  Identities=14%  Similarity=0.194  Sum_probs=175.2

Q ss_pred             CCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          353 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       353 ~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      ++......-+|+++|..++|+|-....||+|+.|.+|.||++..+......            .-+...|.||...|--+
T Consensus        70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V  137 (472)
T KOG0303|consen   70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLV  137 (472)
T ss_pred             cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEE
Confidence            344444456799999999999988888999999999999999766544321            11223589999999999


Q ss_pred             EEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224          433 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  511 (1120)
Q Consensus       433 ~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  511 (1120)
                      +|+| -.+.|++++.|.+|.|||+.+|+.+.   ++. |.+.|+++.|+.||.  +++|.+.|+.|||||.++++.+..-
T Consensus       138 ~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  138 QWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             eecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeec
Confidence            9999 56789999999999999999998665   465 999999999999999  7999999999999999999999988


Q ss_pred             eccccCeEE-EeeccCCCceEEEEEe---cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          512 EGHEAPVYS-VCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       512 ~~h~~~v~~-~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      .+|.+.-.. +.|  -.+|.++.+|-   .+..+-+||..+.+....+..-                   .+...+..-.
T Consensus       212 ~~heG~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PF  270 (472)
T KOG0303|consen  212 VAHEGAKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPF  270 (472)
T ss_pred             ccccCCCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEee
Confidence            888764322 223  24555444443   3678999998765543221110                   0011223334


Q ss_pred             EcCCCCEEEE-EeCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCC
Q 001224          588 FDTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD  635 (1120)
Q Consensus       588 ~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~  635 (1120)
                      ++++.+.+.. |-.|+.|+-|.+....+ +.-+.......+-..+.|-|.
T Consensus       271 yD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  271 YDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            5566566655 55799999999976653 333332233334456777764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.2e-15  Score=144.05  Aligned_cols=288  Identities=11%  Similarity=0.126  Sum_probs=196.9

Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      .|.+-+++|.+++++++..+|.|.+..+..-.....             ...|+......  .+|+.++..++|.  ..+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~   74 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF   74 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence            455567899999999999999999998854211100             11222222112  3499999999997  458


Q ss_pred             EEEEeCCcEEEEEcCCCce------eee--ec-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224          839 VMSASGGKISLFNMMTFKT------MAT--FM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       839 l~~~sdg~i~vwd~~~~~~------~~~--~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      |++++||.|+-|.......      +..  .+     ..-..|++|-..|..+.+|.+ +.|+.++-||+++|+...+++
T Consensus        75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-gGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-GGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-cCCeEEEEEEecCCEEEEEEc
Confidence            8899999999998754322      101  11     123569999999955555554 479999999999999999999


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC--CCCcEEEEccCCcEEEEEeCCeEEE
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQIHFLVVHETQLAI  983 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~fspdg~~la~~~d~~v~i  983 (1120)
                      ||++.|.++.--.....+.||+.||++||||.++++...  .+.......-..  ..-.-.+..-+..++++|....+.+
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lsl  231 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSL  231 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCceeE
Confidence            999999999986666788999999999999999976532  221111110000  0111245556777999998899999


Q ss_pred             EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecC
Q 001224          984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1063 (1120)
Q Consensus       984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p 1063 (1120)
                      |.++..++...+..   ..++..+.|-  .+.++++++...|.-|.+. |.+...++      .++  ..-+..+..-+|
T Consensus       232 whLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s--~~c~s~s~~~~p  297 (325)
T KOG0649|consen  232 WHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES--TACYSASWQTSP  297 (325)
T ss_pred             EeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc--cceeeecccCCc
Confidence            99999999988876   4578888884  5578888888899999875 34443333      221  112212233334


Q ss_pred             CCCCEEEEEeCCCcEEEEe
Q 001224         1064 QEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus      1064 ~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
                        -++|-.++-.+.+.|+.
T Consensus       298 --~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  298 --IKFISIAGFSNKLHILK  314 (325)
T ss_pred             --eEEEEecccceeeeeee
Confidence              45666677777777654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2e-16  Score=155.72  Aligned_cols=345  Identities=13%  Similarity=0.180  Sum_probs=235.2

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCcchhhhhc
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                      ..+|+|+|+++++++.- .+.|-|..+-+..+.+..-   ..|.-+.|..|..+++++ ..++.|.+|++... +-...+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI   87 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI   87 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe
Confidence            35678888899998876 7888888777655444322   246678898887776655 56789999998654 111111


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224          664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  743 (1120)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (447)
T KOG4497|consen   88 --------------------------------------------------------------------------------   87 (447)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeeccCCccccccEEEEEEcCCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224          744 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  822 (1120)
Q Consensus       744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~  822 (1120)
                                ......+.++.|||||+.++..++ +-.|.||.+.+.                    .+..+..      
T Consensus        88 ----------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--------------------~~~~~~~------  131 (447)
T KOG4497|consen   88 ----------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--------------------KGYLLPH------  131 (447)
T ss_pred             ----------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc--------------------eeEEecc------
Confidence                      113456788999999987766665 788888987432                    2222221      


Q ss_pred             CCCCccEEEEccCCCEEEEEe--C--CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR  896 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s--d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~  896 (1120)
                      ....+..++|+|||++.+..+  |  .-+.+...+....++.+....-..+.+.|+| ||..||+-..  +-.|+.|.  
T Consensus       132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe--  208 (447)
T KOG4497|consen  132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE--  208 (447)
T ss_pred             cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence            344568899999999999887  4  2255555556667777777777789999999 8887775322  11222222  


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc--------------------------------
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--------------------------------  944 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------------------  944 (1120)
                                -.-.+..++|+|.+++|+.|+.|+.+||-+--+.+...                                
T Consensus       209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence                      12347788999999999999999999876643322111                                


Q ss_pred             --------------------------ceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeC---CeEEEEEcCCceeeecc
Q 001224          945 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW  995 (1120)
Q Consensus       945 --------------------------~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d---~~v~i~d~~~~~~~~~~  995 (1120)
                                                ...++..........++..++|++|..++++-.|   +.+.+||+...+....+
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence                                      0001111122222356788999999999999655   57999999988776655


Q ss_pred             ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC
Q 001224          996 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus       996 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D 1075 (1120)
                      .   ...+|....|.|....|+.+.....+++|.......++.-.         .+-+|.  .+.|.- +|..++..+.|
T Consensus       359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~---------~GF~i~--~l~W~~-~g~~i~l~~kD  423 (447)
T KOG4497|consen  359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK---------KGFNIQ--KLQWLQ-PGEFIVLCGKD  423 (447)
T ss_pred             h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC---------CCceee--eEEecC-CCcEEEEEcCC
Confidence            4   26789999999999888888777889999988755554322         122244  899997 58889988888


Q ss_pred             CcE
Q 001224         1076 GGV 1078 (1120)
Q Consensus      1076 g~v 1078 (1120)
                      .--
T Consensus       424 afc  426 (447)
T KOG4497|consen  424 AFC  426 (447)
T ss_pred             ceE
Confidence            643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.6e-15  Score=168.67  Aligned_cols=279  Identities=10%  Similarity=0.119  Sum_probs=178.8

Q ss_pred             eeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec-cCceEEEeeecccccCCCCcccccc
Q 001224          723 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       723 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                      .++...++.|.+|++...........+.     .......++++|+++.|++++ .++.|.+|++..             
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------   66 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------   66 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence            4455678999999996432222223322     234567889999999887765 468888888731             


Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cc---eeeeecCCCCCeEEEEEec
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP  875 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~sp  875 (1120)
                              +|.+.....  .........++++|+++++++++  ++.|.+|++.+ +.   .+..+. +.....+++++|
T Consensus        67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                    111100000  00223456899999999999887  78999999974 22   222222 234467789999


Q ss_pred             CCCcEE-EEEeCCCcEEEEEeecceeeE-------eecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCc--cccc
Q 001224          876 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK  944 (1120)
Q Consensus       876 ~d~~~l-asg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~--~~~~  944 (1120)
                       +++++ ++...++.|.+||+.+...+.       .... ......++|+|||++|+++.. +++|.+|+++..  +...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             77666 455567999999997633221       1111 234568999999999988776 899999999842  2211


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----eeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224          945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus       945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
                      ...+...............+.|+|+|++++++  .++.|.+|++....    .+.....   ......++|+|||++|++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence            11121111111111223468999999999996  46799999986543    2222221   234567899999999998


Q ss_pred             EEc-CCcEEEEEcC--Ccce
Q 001224         1019 CFL-DATVCVFSAA--NLKL 1035 (1120)
Q Consensus      1019 ~~~-Dg~v~iwd~~--~~~~ 1035 (1120)
                      ++. +++|.||+++  ++.+
T Consensus       291 a~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        291 AGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEccCCcEEEEEEcCCCCcE
Confidence            876 8999999874  4444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.8e-15  Score=165.10  Aligned_cols=604  Identities=12%  Similarity=0.099  Sum_probs=339.4

Q ss_pred             CCCCCCCcceeeecc-CCCCceEEEEecC-----------CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCc
Q 001224          348 STPEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM  415 (1120)
Q Consensus       348 ~~~~~~~~~~~~~~~-h~~~v~~v~~spd-----------g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  415 (1120)
                      ...|...-+.+..+. |+..|+.|.|.|-           ...+||++...|.|.|||...+..+.              
T Consensus        38 ~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--------------  103 (1062)
T KOG1912|consen   38 SVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--------------  103 (1062)
T ss_pred             EEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------------
Confidence            344545555566666 8999999999873           34578999999999999999877655              


Q ss_pred             ccccccccCCCCceEEEEEcC---CC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEe
Q 001224          416 PLQAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC  491 (1120)
Q Consensus       416 ~~~~~~l~~h~~~V~~l~~sp---dg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~  491 (1120)
                           -+..|..+|..++|-+   +. ..|+.-....++.+|+..+|+.+.   ....-.....|+.+.|-+.+.+.+.+
T Consensus       104 -----~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen  104 -----WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             -----hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEc
Confidence                 2677889999999977   44 466777778899999999998665   33334456777888886665344444


Q ss_pred             cCCCcEEEEECC-C------CceeEEeecccc----------------C------e-EE--EeeccCCCceEEEEEecCC
Q 001224          492 GDDKTIKVWDAT-N------GAKQYIFEGHEA----------------P------V-YS--VCPHHKENIQFIFSTALDG  539 (1120)
Q Consensus       492 s~d~~i~vwd~~-~------~~~~~~~~~h~~----------------~------v-~~--~~~~~~~~~~~l~s~~~dg  539 (1120)
                      + .|.+-+-+.- .      |+..+.-..|..                .      | .+  ++|++.-.  .++......
T Consensus       176 s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r--n~lfi~~pr  252 (1062)
T KOG1912|consen  176 S-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR--NILFITFPR  252 (1062)
T ss_pred             c-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh--ceEEEEecc
Confidence            4 4555444432 1      222222222222                0      0 11  22333332  233334467


Q ss_pred             eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 001224          540 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS--------  611 (1120)
Q Consensus       540 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------  611 (1120)
                      .+.++|++-..+......+.+.+.-+.+-|++++                   ..|++.-.||.+.+|-.+.        
T Consensus       253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~  313 (1062)
T KOG1912|consen  253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKP  313 (1062)
T ss_pred             ceEEEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCcccccc
Confidence            7889999887777777777777777777777763                   4688888999999997654        


Q ss_pred             --------CceeEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccc---------c
Q 001224          612 --------VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR---------T  673 (1120)
Q Consensus       612 --------~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------~  673 (1120)
                              +.....+..-.... +...+..|. ...++.--.+|.+.+|.+.++........+.......         .
T Consensus       314 ~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v  392 (1062)
T KOG1912|consen  314 NASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLV  392 (1062)
T ss_pred             chhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeeh
Confidence                    22222221111111 122333343 4455555667888899888662211111100000000         0


Q ss_pred             CCCCCCCcccchhhhHhhhhccc-cccccccccc--c-CCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceee
Q 001224          674 SENSKPTISPISAAAAAAATSAG-LADRAASMVS--I-PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  749 (1120)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~  749 (1120)
                      .....+.++.++      .-+.| .+.+..|...  . ....+......-...++.|...|+|.++|+.+.......   
T Consensus       393 ~k~~l~~LS~dg------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f---  463 (1062)
T KOG1912|consen  393 GKTSLISLSDDG------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF---  463 (1062)
T ss_pred             hhccccchhhcC------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh---
Confidence            000000111111      00111 1111111111  1 111111111112256779999999999999876544433   


Q ss_pred             ccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       750 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                          ..|...|.++.|....+.+-.+.+. ..            +..-.....+.+-|..+|.-....-.......+|+.
T Consensus       464 ----svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~  526 (1062)
T KOG1912|consen  464 ----SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA  526 (1062)
T ss_pred             ----cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence                2488999999998887744333321 00            000001112345667777644433222346789999


Q ss_pred             EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEe-cCCC----------------cEEEEEeCCCcEE
Q 001224          830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQ  891 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~  891 (1120)
                      +..|.-++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .-                +..+..+  +..+
T Consensus       527 irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~  603 (1062)
T KOG1912|consen  527 IRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESR  603 (1062)
T ss_pred             eeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccch
Confidence            99999999999998 8889999998877776655444458999998 3 21                1233322  2233


Q ss_pred             EEEeec-------cee-eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcE
Q 001224          892 IYNVRV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  963 (1120)
Q Consensus       892 vwd~~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~  963 (1120)
                      ++.+..       +.. ....+...-.+..|+|  .+..|+.|+.+|.+++||+.....+.  ....+ .+   ......
T Consensus       604 ~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p-~~---ra~~l~  675 (1062)
T KOG1912|consen  604 IYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSP-DP---RAHSLT  675 (1062)
T ss_pred             heehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCC-Cc---hhhhee
Confidence            333321       111 0111111223344666  46789999999999999976532211  00011 11   012233


Q ss_pred             EEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224          964 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus       964 ~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      ..+-|....+++-....+-+||.+....+..+......-.+..+.+......++  ..|.++|+-.+.....
T Consensus       676 ~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~  745 (1062)
T KOG1912|consen  676 FPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP  745 (1062)
T ss_pred             cccCCCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence            444554444555566678899998888777663222244455556544444443  2344777766655443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=7.5e-17  Score=154.20  Aligned_cols=308  Identities=11%  Similarity=0.159  Sum_probs=198.4

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI  541 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  541 (1120)
                      +.+.|++|.+.|+++.|-.++.   |.+|..-|.|++|++++.+.+..++ .|...|+.+...+.   ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence            4557889999999999988886   8999999999999999999888888 56778888775432   478999999999


Q ss_pred             EEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeEEEec
Q 001224          542 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       542 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  620 (1120)
                      .+|++.....+.   .|.-.+.++.|.+-.-     +.+....       ...++.-++.. .+.+-|......+...+.
T Consensus        80 ~lw~ia~s~~i~---i~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   80 ILWTIAYSAFIS---IHSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             EEEEccCcceEE---Eeeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence            999987633222   1222233333332110     0000000       01111111100 022222222112221111


Q ss_pred             --CCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224          621 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  695 (1120)
Q Consensus       621 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1120)
                        ....+.+.|..+.. ++  -++++|.++|.+.+||+.++...+ .+...                             
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~-----------------------------  194 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQS-----------------------------  194 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-ccccc-----------------------------
Confidence              11122344444322 22  356778889999999998872221 11110                             


Q ss_pred             ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224          696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  775 (1120)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  775 (1120)
                                                             |.+            ..+...|.+++.++.|.+.-..=+.+
T Consensus       195 ---------------------------------------~kv------------~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  195 ---------------------------------------SKV------------ESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             ---------------------------------------ccc------------ccchhhccCcceeeeechhhcCCcCC
Confidence                                                   000            01113378889999988766666777


Q ss_pred             ccCceEEEeeecccccCCCCccccccCceeecCCCCCcc-cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC
Q 001224          776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM  853 (1120)
Q Consensus       776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~  853 (1120)
                      +.+..+..|+++..                    +|.+. ..+..-  ..-.|..+.+-||++.+|+++ |+.||||+.+
T Consensus       224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            77778888887432                    11110 000111  234577889999999999999 9999999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          854 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       854 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                      +.+.+..++-|...|++++|+| +..++|.++.|++|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999999 8899999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.5e-16  Score=155.66  Aligned_cols=170  Identities=16%  Similarity=0.240  Sum_probs=126.6

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC------CceeEEee-ccccCeEEEeeccCCCceEEEEEecC
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD  538 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d  538 (1120)
                      .+.+|.+.|+++.|+.+++  +|++|++|..+++|++..      .+++.... .|...|.|++|..  ...++++|+.+
T Consensus        51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCc
Confidence            5778999999999999988  899999999999999863      35555443 3558899999854  33799999999


Q ss_pred             CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEE
Q 001224          539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS  617 (1120)
Q Consensus       539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  617 (1120)
                      ++|..-|+.+.+.+..+.....                   .+.+..+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            9999999998766554432211                   1244455566666789999999999999998655 2222


Q ss_pred             EecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcch
Q 001224          618 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       618 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                      +-.........++.|+| ...+|++.+..+.+-+||.+....
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence            22122223567899999 556788888889999999876533

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=3.4e-17  Score=169.77  Aligned_cols=322  Identities=16%  Similarity=0.204  Sum_probs=234.1

Q ss_pred             eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      ..|.+|.+.|+.|.|+..|.  .+++|++|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            35889999999999999999  7999999999999999999887766 57988888888888888889999999999998


Q ss_pred             EecCCCCC---ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224          544 WLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       544 wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      =.+...+.   ...+..|.+.|..++.-|+..                    ..|.+++.|+.+.-+|++.+.....+..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~c  273 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVC  273 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeee
Confidence            76654433   234566777888888877776                    4689999999999999988765544432


Q ss_pred             CCC-C---CCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224          621 DGG-L---PASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  695 (1120)
Q Consensus       621 ~~~-~---~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1120)
                      ... .   ....+++..|. ...+++|+.|..+++||.+.-.+.  ...+   .+.        .|.|..          
T Consensus       274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------  330 (559)
T KOG1334|consen  274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------  330 (559)
T ss_pred             eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc----------
Confidence            111 1   24678889994 458999999999999987543111  0000   000        111110          


Q ss_pred             ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEe
Q 001224          696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  775 (1120)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  775 (1120)
                                                 ++                             ......|++++|+.++.-++++
T Consensus       331 ---------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  331 ---------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ---------------------------cc-----------------------------ccCcccceeEEecCCccceeee
Confidence                                       00                             0134678999999999889999


Q ss_pred             ccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE-ccCCCEEEEEeC-CcEEEEEcC
Q 001224          776 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM  853 (1120)
Q Consensus       776 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~-s~d~~~l~~~sd-g~i~vwd~~  853 (1120)
                      ..|-.|+++.-..+..    .......++      ........++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus       355 YnDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             ecccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence            9998999885332211    110000000      0122222344334455777765 578899999997 899999999


Q ss_pred             CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          854 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       854 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      +++.++.+.+...-|+|+.-+| --.+||+.+-|..|+||...+.
T Consensus       425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence            9999999988888899999999 6779999999999999987543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.7e-17  Score=187.56  Aligned_cols=278  Identities=14%  Similarity=0.197  Sum_probs=209.6

Q ss_pred             cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCce----EEEeccCceEEEeeecccccCCCCccccccC
Q 001224          727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA  802 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  802 (1120)
                      +.+.++.+|.+..............  .....+-..++|.+.|..    |+.+..||.|.+|+......+....      
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~------  107 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE------  107 (1049)
T ss_pred             ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH------
Confidence            4556777777665433321111111  124567788999988776    7778889999999874320000000      


Q ss_pred             ceeecCCCCCcccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCC
Q 001224          803 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN  878 (1120)
Q Consensus       803 ~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~  878 (1120)
                                .+   .....|.+.|..+.|++... ++|+|+ ||.|.|||+...+...++.  .....|.+++|+....
T Consensus       108 ----------~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq  174 (1049)
T KOG0307|consen  108 ----------VL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS  174 (1049)
T ss_pred             ----------HH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence                      11   11123999999999999876 899998 8999999998766555542  2456799999998788


Q ss_pred             cEEEEEeCCCcEEEEEeecceeeEeeccccc--ceEEEEEccCC-CEEEEEeCCC---CEEEEECCCcccccceeeeccC
Q 001224          879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT  952 (1120)
Q Consensus       879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~  952 (1120)
                      .+||+++.+|.+.|||++..+.+-.+..|.+  .+..++|+|++ ..|++++.|.   .|.+||++.-    ...++...
T Consensus       175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~  250 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE  250 (1049)
T ss_pred             HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence            9999999999999999999888888877665  46789999986 4566666554   5999998762    34677778


Q ss_pred             CCCCCCCCCcEEEEccCC-cEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEEcCCcEEEEE
Q 001224          953 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1029 (1120)
Q Consensus       953 ~~~~~~~~i~~~~fspdg-~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~iwd 1029 (1120)
                      +|..   .|.++.|++.+ .+|++ |.|+.|.+|+.++++.+..+..  ....+..+.|.|..- .+++++-||.|.||.
T Consensus       251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence            8875   89999999976 77777 6999999999999999998874  478999999999655 888999999999999


Q ss_pred             cCCcc
Q 001224         1030 AANLK 1034 (1120)
Q Consensus      1030 ~~~~~ 1034 (1120)
                      +.++.
T Consensus       326 l~~~~  330 (1049)
T KOG0307|consen  326 LQGTD  330 (1049)
T ss_pred             eecCC
Confidence            87654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=4.4e-16  Score=150.78  Aligned_cols=259  Identities=15%  Similarity=0.241  Sum_probs=187.0

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCC-------cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      ++.|.+.|+.++-+|-.+.+|++...+.       .+.||.+........         .........+-..+-+.|.|+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---------~~tlE~v~~Ldteavg~i~cv  129 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---------SSTLECVASLDTEAVGKINCV  129 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---------cchhhHhhcCCHHHhCceeeE
Confidence            4457899999999999888899876632       467888754332210         000111111223556699999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeee---eecccccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCce
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL---EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~---~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      .|.|++..||+-. |..|.+|+++.+..+....   .-.+|....++-+|+|  ||.  .+++ ..|+++..||+++.++
T Consensus       130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~t-t~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVAT-TSDSTLQFWDLRTMKK  205 (370)
T ss_pred             EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEE-eCCCcEEEEEccchhh
Confidence            9999999999876 7889999999876531111   1123566788899999  555  3444 4589999999999888


Q ss_pred             eEEe-eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeE
Q 001224          508 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  585 (1120)
Q Consensus       508 ~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~  585 (1120)
                      ...+ .+|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|..+|.++.|.|.-.             
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-------------  271 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-------------  271 (370)
T ss_pred             hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence            7766 46888999999987654 689999999999999998754 5678889999999999988765             


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------------eeEEEecCCCCCCcCeEEEcC-C
Q 001224          586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D  635 (1120)
Q Consensus       586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~  635 (1120)
                             ..+++++.|..|.+|...+-.                             .+.++.  .+...|.+++||. |
T Consensus       272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD  342 (370)
T ss_pred             -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence                   467888888888888653211                             112222  2345799999998 5


Q ss_pred             CCEEEEEECCCcEEEEEcc
Q 001224          636 GCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       636 ~~~l~~~~~dg~i~iwd~~  654 (1120)
                      .-.+|+-+.||.+.|=.+.
T Consensus       343 PWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  343 PWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CeeEEEeccCceEEeecCC
Confidence            5567778899999876553

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.5e-17  Score=171.18  Aligned_cols=229  Identities=16%  Similarity=0.290  Sum_probs=179.8

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEcc-----CCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  495 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~  495 (1120)
                      .+..|.+.|.+++|.|....|++++.||++.+|+++     ....+.++.++++|.++|.|+++.++++  .+.+|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477899999999999999999999999999999993     3345678889999999999999999999  699999999


Q ss_pred             cEEEEECCC------C----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CCcee
Q 001224          496 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT  563 (1120)
Q Consensus       496 ~i~vwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~  563 (1120)
                      +|+.|++..      .    .....+.||.+.|+.++++...  ..|++++.||+++.|+.....+ .++...  .+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999996542      1    2345778999999999998766  4799999999999998876554 222221  11222


Q ss_pred             EEEEcCCC--------C---------------eEEe-----c-ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001224          564 TMAYSADG--------T---------------RTYQ-----G-FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  614 (1120)
Q Consensus       564 ~~~~s~~g--------~---------------~~~~-----~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  614 (1120)
                      ++.+....        .               .++.     + .....+..+..+|.+...+++.+|+.|+++|..++..
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            22221111        0               1111     0 0113456678889999999999999999999999999


Q ss_pred             eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          615 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       615 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.....|.  ..++++++.|+|.+|++++.|+.+++|.+...
T Consensus       524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence            98887664  47999999999999999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=7.9e-15  Score=163.14  Aligned_cols=251  Identities=11%  Similarity=0.104  Sum_probs=164.7

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcC-CCce--eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV  897 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~  897 (1120)
                      ......++++|++++|++++  ++.|.+|++. +++.  ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence            34567899999999998775  6889999986 3332  22222 234567899999 777777665 488999999974


Q ss_pred             -c---eeeEeecccccceEEEEEccCCCEEEE-EeCCCCEEEEECCCcccccc---eeeeccCCCCCCCCCCcEEEEccC
Q 001224          898 -D---EVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       898 -~---~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~v~iWd~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                       +   +.+..+.+ .....+++++|+++++++ ...++.|.+||+++......   .......+     .....++|+||
T Consensus       112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd  185 (330)
T PRK11028        112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN  185 (330)
T ss_pred             CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence             2   22233332 234677899999998854 45569999999986322111   11122222     24578999999


Q ss_pred             CcEEEEE--eCCeEEEEEcCC--c--eeeecccc--C--CCCCCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeee
Q 001224          970 QIHFLVV--HETQLAIFETTK--L--ECVKQWVP--R--ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCR 1038 (1120)
Q Consensus       970 g~~la~~--~d~~v~i~d~~~--~--~~~~~~~~--~--~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~ 1038 (1120)
                      |++++++  .++.|.+|++..  +  +.+..+..  .  .+......+.|+|||++|+++.. ++.|.+|++++......
T Consensus       186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~  265 (330)
T PRK11028        186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS  265 (330)
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence            9999885  478999999973  2  22332221  0  11223456899999999998864 68999999965432111


Q ss_pred             eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC-CCcEEEEecCCCCCCC
Q 001224         1039 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1039 ~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~~~~ 1090 (1120)
                      +.  ...+.+     ..+..+.++| |+++|+++.. +++|.+|++....+.+
T Consensus       266 ~~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        266 FE--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             Ee--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            11  111111     2233689999 5888777665 8999999987544333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-16  Score=155.74  Aligned_cols=151  Identities=18%  Similarity=0.265  Sum_probs=117.9

Q ss_pred             EEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEE
Q 001224          487 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  566 (1120)
Q Consensus       487 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  566 (1120)
                      .++++-..|.|++||..+++.+..++++...+..+.|......+.+.+++.||+|++||++.......+..         
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~---------  112 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW---------  112 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec---------
Confidence            58888889999999999999999999999999999987654557899999999999999998655433221         


Q ss_pred             EcCCCCeEEecccccceeEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcC-CCCEEE
Q 001224          567 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA  640 (1120)
Q Consensus       567 ~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~  640 (1120)
                               .++...+..+++....++.+++|.    .+-.|.+||++..+. +..+. +.|...|+++.|+| +.++|+
T Consensus       113 ---------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  113 ---------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             ---------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence                     112223455555555566677765    477899999998876 55443 45566899999999 778999


Q ss_pred             EEECCCcEEEEEccCc
Q 001224          641 VSTNDNGIKILATSDG  656 (1120)
Q Consensus       641 ~~~~dg~i~iwd~~~~  656 (1120)
                      +|+.||.|.+||+...
T Consensus       183 SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eecccceEEeeecCCC
Confidence            9999999999998654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.1e-16  Score=155.85  Aligned_cols=289  Identities=16%  Similarity=0.192  Sum_probs=195.7

Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCceeEE--eeccc
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHE  515 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~  515 (1120)
                      ..+|++...|.|++||..+++.++   .+.+|...++.++|..+ +.. .+.+|+.||+|++||++.......  +..+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~---~fk~~~~~~N~vrf~~~ds~h-~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE---EFKGPPATTNGVRFISCDSPH-GVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh---eecCCCCcccceEEecCCCCC-eeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            568889999999999999988776   68899999999999875 333 799999999999999998665543  34454


Q ss_pred             -cCeEEEeeccCCCceEEEEEec----CCeEEEEecCCCCC-ce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          516 -APVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLGS-RV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       516 -~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~-~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                       .+..+++  ...+++.+++|..    +-.|.+||++.... +. -...|...|+.+.|.|...                
T Consensus       117 ~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----------------  178 (376)
T KOG1188|consen  117 GTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----------------  178 (376)
T ss_pred             CCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----------------
Confidence             3444444  3335567777753    56799999998766 32 3456778888888888766                


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCc----eeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                          +.|++||.||.|.++|+....    ++.++.   +...|.++.|..++ +.+.+-+..++..+|+++.+... ..+
T Consensus       179 ----nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~-~~~  250 (376)
T KOG1188|consen  179 ----NLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE-TWL  250 (376)
T ss_pred             ----CeEEeecccceEEeeecCCCcchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh-hcc
Confidence                689999999999999997543    223332   22358889999877 45888889999999999988422 222


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccC-CCcceeeecccCCC
Q 001224          664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES-NDKSKVWKLTELSE  742 (1120)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~  742 (1120)
                      .....             ....  ..    ...         ... +--+...--+....+.++. .++..++-+.....
T Consensus       251 ~~~~~-------------~~~d--~r----~~~---------~~d-Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s  301 (376)
T KOG1188|consen  251 ENPDV-------------SADD--LR----KED---------NCD-YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS  301 (376)
T ss_pred             cCccc-------------hhhh--HH----hhh---------hhh-heeecccCCCcceEEEeccccCceeEEEeeeccc
Confidence            11100             0000  00    000         000 0000111112333444333 56666666664444


Q ss_pred             CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224          743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      ............+|..-|+++.|...+..+.++++||.+.+|..
T Consensus       302 ~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  302 GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            44444445555668888999999999999999999999999984

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=8.5e-16  Score=172.73  Aligned_cols=264  Identities=20%  Similarity=0.264  Sum_probs=193.7

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ......+.-...|+|++|+|....++|.|..+|.|.+||+..+.....             .........|..+|+.+.|
T Consensus       233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEE
Confidence            344567778899999999999988999999999999999988765311             0111135679999999999


Q ss_pred             cCCC--CeEEEEECCCeEEEEEccCCceeeeeeeec---------ccccCeEEEEEcCCCCceEEEEecCCCcEEEEE--
Q 001224          435 SPDG--SLFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD--  501 (1120)
Q Consensus       435 spdg--~~las~~~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd--  501 (1120)
                      -.+-  .-+++++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+++|.|..=+  
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEecc
Confidence            7744  459999999999999877432211110111         11246899999998877 789999999987733  


Q ss_pred             -CCCCc-----eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC-CCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224          502 -ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       502 -~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                       ...+.     .+..+..|.++|.++.++|-.. ..+.+++ |.++++|... ...++..+..+...+++++|||...  
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--  454 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--  454 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--
Confidence             22222     2335567889999999876554 3444444 9999999887 5666666666667788888888765  


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                                        ..++++..||.|.+||+.....  +.+....  ....+.+.|+++|+.|++|...|.+.+|+
T Consensus       455 ------------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  455 ------------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             ------------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence                              4588889999999999975543  3333323  34567788999999999999999999999


Q ss_pred             ccCc
Q 001224          653 TSDG  656 (1120)
Q Consensus       653 ~~~~  656 (1120)
                      +...
T Consensus       515 l~~~  518 (555)
T KOG1587|consen  515 LSES  518 (555)
T ss_pred             cCch
Confidence            8644

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=2.9e-17  Score=180.34  Aligned_cols=282  Identities=17%  Similarity=0.240  Sum_probs=202.3

Q ss_pred             eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE
Q 001224          465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  544 (1120)
Q Consensus       465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  544 (1120)
                      ..|.||...|+|+.|...|.  ++++|++|..++||.++++.++.++.||.+.|+.++.+  .+..++++++.|..|++|
T Consensus       184 krLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEE
Confidence            46889999999999999999  79999999999999999999999999999999999874  344689999999999999


Q ss_pred             ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---
Q 001224          545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---  621 (1120)
Q Consensus       545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---  621 (1120)
                      .+..+.++..+.+|.+.|++++|+|                         ..+.+.||++++||.+- .........   
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP-------------------------~~sss~dgt~~~wd~r~-~~~~y~prp~~~  313 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSP-------------------------RASSSDDGTCRIWDARL-EPRIYVPRPLKF  313 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCc-------------------------cccCCCCCceEeccccc-cccccCCCCCCc
Confidence            9999999999999999999999888                         34678899999999871 111110000   


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                      .....+.++.|-..+.-+++|+.|                                                        
T Consensus       314 ~~~~~~~s~~~~~~~~~f~Tgs~d--------------------------------------------------------  337 (1113)
T KOG0644|consen  314 TEKDLVDSILFENNGDRFLTGSRD--------------------------------------------------------  337 (1113)
T ss_pred             ccccceeeeeccccccccccccCC--------------------------------------------------------
Confidence            000111222222222222222222                                                        


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                  +.-..|.+.                       .+++...+-.+++...    
T Consensus       338 ----------------------------~ea~n~e~~-----------------------~l~~~~~~lif~t~ss----  362 (1113)
T KOG0644|consen  338 ----------------------------GEARNHEFE-----------------------QLAWRSNLLIFVTRSS----  362 (1113)
T ss_pred             ----------------------------cccccchhh-----------------------HhhhhccceEEEeccc----
Confidence                                        222222211                       0011111110111111    


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceee
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMA  859 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~  859 (1120)
                                                                           |- .+.+++- +-.+.+|++.+|....
T Consensus       363 -----------------------------------------------------d~~~~~~~ar~~~~~~vwnl~~g~l~H  389 (1113)
T KOG0644|consen  363 -----------------------------------------------------DLSSIVVTARNDHRLCVWNLYTGQLLH  389 (1113)
T ss_pred             -----------------------------------------------------cccccceeeeeeeEeeeeecccchhhh
Confidence                                                                 11 2333333 6779999999999999


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .+.+|...+..+.++|.+.++..+++.||...|||+-.|..++.. .+| ..+..-+||+||..++....-|.+.|....
T Consensus       390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence            999999999999999988888889999999999999888666543 555 456677999999999988888888888765


Q ss_pred             Ccc
Q 001224          939 GWE  941 (1120)
Q Consensus       939 ~~~  941 (1120)
                      .++
T Consensus       469 qs~  471 (1113)
T KOG0644|consen  469 QSK  471 (1113)
T ss_pred             CCc
Confidence            543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.2e-15  Score=172.04  Aligned_cols=305  Identities=17%  Similarity=0.255  Sum_probs=211.1

Q ss_pred             ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc---ccCeEEEeeccCCCceEEEEEecCCeEEEEecC
Q 001224          471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD  547 (1120)
Q Consensus       471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  547 (1120)
                      ...-..+.|+|-..  .++++.+.-.|+|||.+.++++..|..+   ...|+.+++-...|..++++|+.||.|++|+--
T Consensus      1064 ~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            34556678888888  5888887889999999999998888654   356888988777788899999999999999643


Q ss_pred             CCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCC
Q 001224          548 NLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA  626 (1120)
Q Consensus       548 ~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  626 (1120)
                      ... ....+...-..+.++...+.|.         . ..+.|.....+|+++|+-..|+|||......+..+..... ..
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~ 1210 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TL 1210 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-cc
Confidence            321 2222211111222222222222         2 5677777777888888899999999998888877765433 34


Q ss_pred             cCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224          627 SPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  705 (1120)
Q Consensus       627 v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1120)
                      +++++-+- .|+.+++|..||.|++||.+.....                                              
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------------------------------- 1244 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------------------------------- 1244 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCcc----------------------------------------------
Confidence            55555443 5799999999999999998654110                                              


Q ss_pred             ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc--EEEEEEcCCCce-EEEeccCceEE
Q 001224          706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIHL  782 (1120)
Q Consensus       706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~dg~i~  782 (1120)
                                              .-+.+|.                  .|...  |..+.+.+.|-. |++++.+|.|+
T Consensus      1245 ------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1245 ------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             ------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence                                    1122221                  13333  778888776654 99999999999


Q ss_pred             EeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec
Q 001224          783 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       783 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~  862 (1120)
                      +||+......                   ....... .....+..+++.++++...+|+|+.+.|+||++.. +.+..++
T Consensus      1283 ~~DlR~~~~e-------------------~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k 1341 (1387)
T KOG1517|consen 1283 LLDLRMSSKE-------------------TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIK 1341 (1387)
T ss_pred             EEecccCccc-------------------ccceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh-hhhcccc
Confidence            9998542100                   0000000 00012358999999999999999999999999864 3333332


Q ss_pred             C-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          863 P-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       863 ~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      .       ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus      1342 ~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence            2       235689999999 8889999999999999987654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=8.5e-16  Score=154.32  Aligned_cols=306  Identities=9%  Similarity=0.050  Sum_probs=208.2

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc---eeeeeeee-cccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~---~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      -+.+|.+.|+++.||.++++||+|+.|..+++|+++.--   ..+++... ..|...|.|++|...+.  .+.+|+.+++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~  128 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT  128 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence            477899999999999999999999999999999986321   11122122 23668999999998887  7999999999


Q ss_pred             EEEEECCCCceeEEeec--cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce---eeeCCCCceeEEEEcCCC
Q 001224          497 IKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYSADG  571 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g  571 (1120)
                      |...|+++.+.+..+..  ..+.|..+..+|..  +.+++.+.+|.|.+||.+......   ..........++.|.|..
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999998887752  23589999988773  589999999999999998754221   112222333444444443


Q ss_pred             CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eEEEec----CCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDA----DGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                      .                    .+|++.+..+-+.+||.+.... +....+    ......-.++.|+|+|..+.+--...
T Consensus       207 P--------------------~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  207 P--------------------ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             c--------------------eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence            3                    4567788889999999875431 111111    11111235789999999988776666


Q ss_pred             cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224          647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  726 (1120)
Q Consensus       647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  726 (1120)
                      .-.+||+.+....+-.+......-.        .++                            ......+.+...+++|
T Consensus       267 ~P~~~D~~S~R~~V~k~D~N~~GY~--------N~~----------------------------T~KS~~F~~D~~v~tG  310 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSDHNPNGYC--------NIK----------------------------TIKSMTFIDDYTVATG  310 (609)
T ss_pred             CCEEeeeecccceeEeccCCCCcce--------eee----------------------------eeeeeeeecceeeecc
Confidence            6677887665222322221110000        000                            0111223345568899


Q ss_pred             cCCCcceeeecccCCCCccceeecc----------------CCccccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224          727 ESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      +.+=.|.+|.+...........+.-                ...+|..-+..+.|+|...+|++.+-...+++|.-
T Consensus       311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            9999999999986554333221111                01568888999999999999999999999999964

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=7e-15  Score=148.11  Aligned_cols=241  Identities=14%  Similarity=0.209  Sum_probs=181.1

Q ss_pred             CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224          824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  901 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~  901 (1120)
                      ...+..+.|..+...|..|+....++|+................|.-+-|+.   .++|..+.+.  .++++++..+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            3456677799999999999955678888876555333333344566777765   4666666544  5899998887777


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E--eC
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE  978 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~--~d  978 (1120)
                      ..+. ...+|.+|.+.  .++|+.+=.+. |.|||+..-+     .+.......+-...+.++.+++.+.++|. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            6665 34678899886  45666665554 9999999843     34444333221234555666666779998 3  56


Q ss_pred             CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224          979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
                      |.|.+||+.+.+.+..+.  .|.+.+.+++|++||.+||++++.|+ ||||.+.+|+.+..+..... +       +...
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy  222 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY  222 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence            899999999999988877  89999999999999999999999987 89999999999998873222 2       3444


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1058 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1058 ~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +++|+| |+++|++.+..++|+||.+....
T Consensus       223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            999999 68999999999999999998866

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.70  E-value=4.4e-17  Score=178.93  Aligned_cols=232  Identities=18%  Similarity=0.283  Sum_probs=177.1

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      -+.||..+|+|+.|...|.++++|+.|..|+||..+++.++.   ..+||.+.|+.++.+.+..  ++++++.|..|++|
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence            377999999999999999999999999999999999988776   7999999999999998877  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee---e-eCCCCceeEEEEcCCCCeEEe
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---Y-EAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~-~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      .+.++.++..+.||++.|++++|+|-.      +.+.||++++||.+-......   . .....-+.++.|...+....+
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T  333 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT  333 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence            999999999999999999999997643      678899999999982111111   0 111234455556555555554


Q ss_pred             cccccc-----eeEEEEcCCC-----------CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEE
Q 001224          577 GFRKRS-----LGVVQFDTTK-----------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLL  639 (1120)
Q Consensus       577 ~~~~~~-----i~~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l  639 (1120)
                      +..+..     +.++++...+           .+.+++-.+-.+++|++.+|...+.+.++.+  .+..+.++| +.+..
T Consensus       334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIA  411 (1113)
T ss_pred             ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhh
Confidence            443321     1111222111           3445555677899999999999998887765  677799999 56667


Q ss_pred             EEEECCCcEEEEEccCcchhhhhccc
Q 001224          640 AVSTNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       640 ~~~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                      .+++.||...|||+..+......+.+
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeecc
Confidence            78899999999999888433333333

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=4e-16  Score=165.31  Aligned_cols=277  Identities=18%  Similarity=0.273  Sum_probs=182.3

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC--------CceeEEeeccccCeEEEeeccCCCceEEEEEec
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  537 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  537 (1120)
                      ++..|.+.|+.++|.+-..  .|++++.||+|++|+++.        -+++.+|.+|.++|.|+++  ..+++.+++|+.
T Consensus       289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence            5778999999999999888  799999999999999932        2567899999999999997  456689999999


Q ss_pred             CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 001224          538 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  617 (1120)
Q Consensus       538 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  617 (1120)
                      ||+|+.|++.......  ..+...+        ..-.+.||.+ .++.+++++....|++++.||+++.|+...... .+
T Consensus       365 Dg~I~~w~~p~n~dp~--ds~dp~v--------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~  432 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPD--DSYDPSV--------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT  432 (577)
T ss_pred             CceeeeeccCCCCCcc--cccCcch--------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence            9999999776321111  0000000        0123444444 666777777777899999999999999876655 33


Q ss_pred             EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001224          618 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  697 (1120)
Q Consensus       618 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1120)
                      +........-.++.+-...  ++....+..+..+++.+. +..                                     
T Consensus       433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev~-------------------------------------  472 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EVV-------------------------------------  472 (577)
T ss_pred             cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hhh-------------------------------------
Confidence            3222211122233332211  000001111111111110 000                                     


Q ss_pred             ccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc
Q 001224          698 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  777 (1120)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  777 (1120)
                                                                                     ..+.+.+.       +.
T Consensus       473 ---------------------------------------------------------------s~~~~~~s-------~~  482 (577)
T KOG0642|consen  473 ---------------------------------------------------------------SDLLIFES-------SA  482 (577)
T ss_pred             ---------------------------------------------------------------hheeeccc-------cC
Confidence                                                                           00000000       00


Q ss_pred             CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc
Q 001224          778 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  856 (1120)
Q Consensus       778 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~  856 (1120)
                      ....+                                        ....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus       483 ~~~~~----------------------------------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  483 SPGPR----------------------------------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             CCccc----------------------------------------ccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            00000                                        123345566667777777777 8999999999999


Q ss_pred             eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224          857 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       857 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      .+.....|...++++++.| +|-+|++|+.|+.|++|.+....++.....|..
T Consensus       523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence            9999999999999999999 999999999999999999988877777666653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=1.4e-14  Score=140.67  Aligned_cols=245  Identities=15%  Similarity=0.216  Sum_probs=176.5

Q ss_pred             CCCCccEEEEccCCC-----EEEEEeCCcEEEEEcCC--Cce--eeee-----cCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224          823 PEEAVPCFALSKNDS-----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS  888 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~-----~l~~~sdg~i~vwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg  888 (1120)
                      |..+++.+.|.|+..     .||+ ++..+|+|.+..  .+.  ...+     ..+..++++..|..-+.++|.+.+-|.
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            889999999999874     3444 455799999873  221  1112     224568999999988889999999999


Q ss_pred             cEEEEEeecce---eeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEE
Q 001224          889 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  964 (1120)
Q Consensus       889 ~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  964 (1120)
                      +..|||++++.   ....+-+|..+|..++|..++ +.+||+|.||.||++|++.-+.  ...+-.....   ..+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIYE~p~~---~~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIYEDPSP---STPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEecCCCC---CCcceee
Confidence            99999999863   467788999999999999865 5789999999999999988443  2222222111   1356788


Q ss_pred             EEcc-CCcEEEE-E-eCCeEEEEEcCCc-eeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCCcceeeee
Q 001224          965 QFHQ-DQIHFLV-V-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       965 ~fsp-dg~~la~-~-~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
                      +|++ |-+++|+ + ....|.|.|++.- ..+..+  .+|.+.|..|+|.|.. ..|.+++.|..+.|||+...-.-...
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE  326 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence            8887 4577777 5 4457999998753 334444  4899999999999965 57999999999999999765431111


Q ss_pred             CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      .+......   ++.|+  -+.|+|..++.++.+. ++++.+-
T Consensus       327 dPilay~a---~~EVN--qi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  327 DPILAYTA---GGEVN--QIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             Cchhhhhc---cceee--eeeecccCCCEEEEEe-cCeeeEE
Confidence            11111111   33466  7899988888988876 4555543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.68  E-value=3.1e-15  Score=145.16  Aligned_cols=253  Identities=16%  Similarity=0.259  Sum_probs=186.5

Q ss_pred             eccCCCCceEEEEecCCC----eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          360 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~----~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .+.|.-+++.+.|.||.+    .||||.+  -.+++|.+...+.....          ........-..+..++++..|+
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn  159 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN  159 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence            467999999999999873    3677655  78999999743221110          0011111234567899999999


Q ss_pred             C-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee--
Q 001224          436 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--  512 (1120)
Q Consensus       436 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--  512 (1120)
                      . |-+++.+++-|-+..|||++++..-.....|-.|...|..|+|...+.. ++++.|.||+||+||++..+.-..+-  
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~  238 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED  238 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence            8 8899999999999999999997432222357789999999999998877 89999999999999998765543332  


Q ss_pred             -ccccCeEEEeeccCCCceEEEEEecC-CeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          513 -GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       513 -~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                       ....+...++|+. .+-+++++-..| ..|.+.|++... ....+..|...|..++|.|...                 
T Consensus       239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~-----------------  300 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS-----------------  300 (364)
T ss_pred             CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence             2245667788764 344688887765 578999998754 5568899999999999999877                 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCc------eeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQ------LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  650 (1120)
                         ..+.+++.|..+.+||+...-      ++..+..   ...|+.+.|++ .+.+++++.. +.+.+
T Consensus       301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~a---~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYTA---GGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             ---ceeeecCCcceEEEEecccccccCCCCchhhhhc---cceeeeeeecccCCCEEEEEec-CeeeE
Confidence               679999999999999997532      2222222   23689999997 6778877764 34443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.68  E-value=1.6e-15  Score=146.89  Aligned_cols=228  Identities=18%  Similarity=0.266  Sum_probs=165.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~  440 (1120)
                      +-+.|.|+.|.|++..+++.  .|..|.+|+++.+..+.. .+.            ...-.+|....++-+|||  ||..
T Consensus       122 avg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev~------------ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EVL------------SSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-eec------------ccccccccceecccccCCCCccce
Confidence            45699999999999974443  389999999998776321 111            001234677888999999  8888


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeEEeeccccCeE
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEGHEAPVY  519 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~h~~~v~  519 (1120)
                      +++.+ |+++..||+++.++...+  -..|...|..+.|+|+-+. +|++|++||.|++||.+. ..+++++.+|...|+
T Consensus       187 v~tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW  262 (370)
T KOG1007|consen  187 VATTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW  262 (370)
T ss_pred             EEEeC-CCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence            88765 889999999987655432  3478889999999999887 899999999999999984 667899999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCcee--eeCCC------CceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPG------RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~------~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                      ++.|++..+ ++|++|+.|..|.+|....-.....  +....      ........-+||.......+...+.+++|+.-
T Consensus       263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA  341 (370)
T ss_pred             EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence            999998776 7999999999999997654322111  11100      01122223445543333344557888888776


Q ss_pred             CCEE-EEEeCCCeEEEEECC
Q 001224          592 KNRF-LAAGDDFSIKFWDMD  610 (1120)
Q Consensus       592 ~~~l-~~~~~dg~i~iwd~~  610 (1120)
                      ..++ ++-+.||.+.|=.+.
T Consensus       342 dPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  342 DPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CCeeEEEeccCceEEeecCC
Confidence            6655 557889998886553

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=7.6e-15  Score=165.79  Aligned_cols=259  Identities=16%  Similarity=0.180  Sum_probs=172.8

Q ss_pred             cEEEEEEcC--CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224          759 KISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  836 (1120)
Q Consensus       759 ~i~~l~~s~--~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~  836 (1120)
                      .|+.+.+-.  |...+++++.||.|+||+--....      ....-+.-|..-++....       ..+.-.-+.|-...
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLPG-------ARGTGLVVDWQQQS 1177 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCcc-------CCCCCeeeehhhhC
Confidence            444444432  344577777778888776311100      000012233333333221       11111334566555


Q ss_pred             CEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeecccccc-
Q 001224          837 SYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR-  910 (1120)
Q Consensus       837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~-  910 (1120)
                      .+|++++ -..|+|||+..-.++..+.. ....|+++.-+-..|+++|+|..||.|++||.+..   ..+...+.|+.. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            5566555 57899999987777666553 34457888776657899999999999999998753   356777889888 


Q ss_pred             -eEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224          911 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  988 (1120)
Q Consensus       911 -V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~  988 (1120)
                       |..+.+-+.|-. |++|+.||.|++||++.........+..   +....+..+++..+++...+|+|+.+.|+||++..
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence             999999887754 9999999999999999853222111111   11101247999999999999998779999999864


Q ss_pred             ceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          989 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       989 ~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                       +.+..+...     ...+.+.|++|.|-.-+||+|+.|.+|.||.....+
T Consensus      1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence             333333221     125678999999999999999999999999876654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=1e-12  Score=149.96  Aligned_cols=150  Identities=17%  Similarity=0.319  Sum_probs=123.4

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      +-++++.-+ +++|+.-+.|++|++...+...                   .+.||.+.|.++.||-||+++++.|.|.+
T Consensus       139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs  198 (967)
T KOG0974|consen  139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS  198 (967)
T ss_pred             EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence            345666665 9999999999999987322211                   28899999999999999999999999999


Q ss_pred             EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc-cCeEEEeeccCCC
Q 001224          450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN  528 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~  528 (1120)
                      +++|++++.+...  .+.-+|+.+|+.+.|.|. .   ++|++.|.+.++|+ ..+..+..+.+|. ..|+.++..+  +
T Consensus       199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~  269 (967)
T KOG0974|consen  199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G  269 (967)
T ss_pred             eeeeecccccccC--cccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence            9999999988665  245689999999999998 4   99999999999997 4566666888776 4578887643  3


Q ss_pred             ceEEEEEecCCeEEEEecCC
Q 001224          529 IQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       529 ~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      ...+++++.|+.+++|++..
T Consensus       270 ~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  270 VIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceEEEeeccCcchhhhhhhc
Confidence            47899999999999998753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=8.6e-15  Score=138.37  Aligned_cols=253  Identities=16%  Similarity=0.211  Sum_probs=172.3

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  445 (1120)
                      .|.+-+|+|.+++ +++|..+|+|.+..+..--.-...       .  .-....-...+|.++|+.++|.  ..+|++|+
T Consensus        12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~-------~--~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g   79 (325)
T KOG0649|consen   12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE-------P--PGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG   79 (325)
T ss_pred             HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC-------C--CCCcceeeccccCCCeeeeeee--hhheeecc
Confidence            4566689999995 999999999999998542111000       0  0000111247899999999998  55677776


Q ss_pred             CCCeEEEEEccCCce---eeeeee--ecccc-----cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          446 SRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                       ||.|+=|.++....   .+...+  ...|.     -.|++|-..|...  -++.++.|+.++-||+++|+..++++||+
T Consensus        80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence             59999998764322   111001  11222     3588999998877  46777789999999999999999999999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      +.|.++.--  +....+++|+.||++|+||.++.+....+......-   ..-|+        -..-|.++  .-+..++
T Consensus       157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~--------~g~wigal--a~~edWl  221 (325)
T KOG0649|consen  157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPD--------WGKWIGAL--AVNEDWL  221 (325)
T ss_pred             ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChh---hcCcc--------cCceeEEE--eccCceE
Confidence            999998752  222479999999999999999988776554322110   00111        11122233  3334567


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      ++|+ ...+.+|+++..++...+....+   +..+.|.  .+.+++++..+.|.-|.+.
T Consensus       222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeec
Confidence            6655 56799999999999888876554   6667775  4467777777788888664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.2e-15  Score=156.58  Aligned_cols=275  Identities=12%  Similarity=0.157  Sum_probs=204.0

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  437 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d  437 (1120)
                      +-+|.+-|+.|.|+..|. ++++|+.|..|.+||+..++....                  ...||...|....|-|  +
T Consensus       138 L~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~  198 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG  198 (559)
T ss_pred             ccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence            345999999999999999 599999999999999999887654                  3678999999999988  5


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe---ecc
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH  514 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~h  514 (1120)
                      .+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.=.|++.+.....+   ..+
T Consensus       199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~  277 (559)
T KOG1334|consen  199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD  277 (559)
T ss_pred             CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence            678999999999999887655545555568889999999999999887 7999999999999999887654333   223


Q ss_pred             cc---CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          515 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       515 ~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                      ..   ....++.+|... ..+++++.|..+++||.+.......    .+.+.  .|.|.   .+.....-.|++++|+.+
T Consensus       278 ~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~  347 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD  347 (559)
T ss_pred             CccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence            33   356677666543 5889999999999999875322110    00000  11111   111123336777777777


Q ss_pred             CCEEEEEeCCCeEEEEECCCCc------------eeEE-EecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCcc
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQ------------LLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~------------~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                      +..|++...|-.|++++..-+.            .+.. +++|.....|..+-| -|...++++|+.-|.|.||+-.++ 
T Consensus       348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-  426 (559)
T KOG1334|consen  348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-  426 (559)
T ss_pred             ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence            7778888888889999643222            2233 677777677888776 578899999999999999998887 


Q ss_pred             hhhhhccc
Q 001224          658 RLLRTFEN  665 (1120)
Q Consensus       658 ~~~~~~~~  665 (1120)
                      +.++.+++
T Consensus       427 eii~~Meg  434 (559)
T KOG1334|consen  427 EIIRFMEG  434 (559)
T ss_pred             HHHHHhhc
Confidence            66666554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.3e-15  Score=156.53  Aligned_cols=198  Identities=16%  Similarity=0.164  Sum_probs=160.2

Q ss_pred             cEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224          828 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  906 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  906 (1120)
                      .+++|+.+|..+++|+ ||++|+|+..+...+.....|..+|.++.|+| |+++|++-+.| ..+||++.++..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999998 99999999888888888888999999999999 99999999999 999999999977666553


Q ss_pred             --cccceEEEEEccCC-----CEEEEEeCCCCEEEEECCCcccccceee-eccCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001224          907 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  977 (1120)
Q Consensus       907 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~fspdg~~la~~-~  977 (1120)
                        -......+.|+.|+     ...+....-+.|+.|++..+........ +....+    ..|++++.|+||+++|.| .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence              22345678888877     3344555567788888776554211111 111111    368999999999999995 8


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      ||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999998877654 58999999999999999999999999999887754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=4.7e-14  Score=162.32  Aligned_cols=211  Identities=11%  Similarity=0.108  Sum_probs=150.2

Q ss_pred             ccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCC----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          422 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      +..|...|..++.++.. .++++||.||+|++|+...-    ...+...++.....++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            77899999999998854 99999999999999998631    22333344544577899999999999  5888999999


Q ss_pred             EEEEECCCC--c-----eeEEeecc-ccCeEEE-eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCCceeEE
Q 001224          497 IKVWDATNG--A-----KQYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTM  565 (1120)
Q Consensus       497 i~vwd~~~~--~-----~~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~  565 (1120)
                      |++.++...  +     +.+....+ .+.+.++ ++........++.+..-+.|..||++.....+.+..  ..+     
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG----- 1196 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG----- 1196 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc-----
Confidence            999998762  1     11222222 2334444 332222223788888889999999988665554432  233     


Q ss_pred             EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC---CCEEEEE
Q 001224          566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVS  642 (1120)
Q Consensus       566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~  642 (1120)
                                      .++.++.+|.++++++|+..|.+.+||++-+.++..+..... ..+..+...|-   ....+++
T Consensus      1197 ----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1197 ----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             ----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEe
Confidence                            444555555556999999999999999999999988875443 56777777663   2455444


Q ss_pred             E--CCCcEEEEEccCc
Q 001224          643 T--NDNGIKILATSDG  656 (1120)
Q Consensus       643 ~--~dg~i~iwd~~~~  656 (1120)
                      +  ..+.|.+|++.+|
T Consensus      1260 ~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cccCCCceeeeecccC
Confidence            4  4788999999988

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3e-15  Score=153.83  Aligned_cols=200  Identities=17%  Similarity=0.157  Sum_probs=151.7

Q ss_pred             EEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceee
Q 001224          869 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL  948 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~  948 (1120)
                      .+++|+. ++..|++|+.||.+|||+..+...+.....|..+|.++.|||||++|++.+.| ..+||+++++-..     
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~-----  220 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL-----  220 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh-----
Confidence            7899999 89999999999999999988887778888899999999999999999999999 8999999997322     


Q ss_pred             eccCCCCCCCCCCcEEEEccCC---cE-EEE-E-eCCeEEEEEcCCcee---eeccccCCCCCCeeEEEECCCCcEEEEE
Q 001224          949 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV-V-HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus       949 ~~~~~~~~~~~~i~~~~fspdg---~~-la~-~-~d~~v~i~d~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
                      +.... .........+.|+.|+   .+ +++ . .-+.|+.||+.....   .+....-.-...|++++.|+||++++.|
T Consensus       221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            11111 1111356788898887   33 333 2 345666666543222   1111111124579999999999999999


Q ss_pred             EcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1020 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1020 ~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      +.||.|.|++..+.+.+.-++      ..| .  ..++.+.|+| |.+++++.+.|....|..+.-.
T Consensus       300 T~dGsVai~~~~~lq~~~~vk------~aH-~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVK------EAH-L--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeeh------hhh-e--eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence            999999999999988886655      222 2  2344999999 6899999999999999998763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1e-14  Score=152.75  Aligned_cols=206  Identities=17%  Similarity=0.218  Sum_probs=160.5

Q ss_pred             CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccc
Q 001224          720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA  799 (1120)
Q Consensus       720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  799 (1120)
                      ...++..+.||.+.+.+-....+        -.-..|.+.+.+-.|+|||.-|+++++||.|++|.-             
T Consensus        75 ~d~~~i~s~DGkf~il~k~~rVE--------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-------------  133 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSARVE--------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-------------  133 (737)
T ss_pred             cceEEEEcCCceEEEecccchhh--------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-------------
Confidence            46788888899887766432111        111458999999999999999999999999999973             


Q ss_pred             ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224          800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  879 (1120)
Q Consensus       800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  879 (1120)
                                +|-+... +..  ....|.|++|.|+...++.+..+.+.+=.+.....+-..++|++-|.++.|++ .+.
T Consensus       134 ----------sGMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~  199 (737)
T KOG1524|consen  134 ----------SGMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSN  199 (737)
T ss_pred             ----------cchHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-ccc
Confidence                      3322211 111  67889999999999999999888899888887777888899999999999999 889


Q ss_pred             EEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCC
Q 001224          880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  959 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~  959 (1120)
                      ++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.++. +++|+=..                   -.+
T Consensus       200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~G  257 (737)
T KOG1524|consen  200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RVG  257 (737)
T ss_pred             ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Ccc
Confidence            99999999999999955 6667777889999999999999 55555553 23441111                   125


Q ss_pred             CCcEEEEccCCcEEEEE-eCCeEE
Q 001224          960 SDTRVQFHQDQIHFLVV-HETQLA  982 (1120)
Q Consensus       960 ~i~~~~fspdg~~la~~-~d~~v~  982 (1120)
                      +|..++||+||..+++| ..|.+.
T Consensus       258 SifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  258 SIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             ceEEEEEcCCCceeeccccCceEE
Confidence            89999999999999985 566544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=5.7e-13  Score=134.50  Aligned_cols=303  Identities=15%  Similarity=0.194  Sum_probs=198.9

Q ss_pred             cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224          757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  836 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~  836 (1120)
                      ...+..+.|+.+...|..++.+|. ++|+......                     ...    .......|..+-|+.  
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k---------------------~~~----~~~~~~~IvEmLFSS--   56 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK---------------------CFS----KDTEGVSIVEMLFSS--   56 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCce-eEEecCchHH---------------------hhc----ccCCCeEEEEeeccc--
Confidence            345666778888887777777764 5555421110                     000    000222344444544  


Q ss_pred             CEEEEEe-C--CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc---cccc
Q 001224          837 SYVMSAS-G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKR  910 (1120)
Q Consensus       837 ~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~  910 (1120)
                      .++|..+ +  ..+++.+.+....+..+. ...+|.+|.+..   +.|++.-++ .|+|||+.+.++++++..   +...
T Consensus        57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g  131 (391)
T KOG2110|consen   57 SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG  131 (391)
T ss_pred             ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence            3555554 3  459999998877776665 456799999975   345555444 499999999998887753   5556


Q ss_pred             eEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC--eEEEEEc
Q 001224          911 ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET--QLAIFET  986 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~--~v~i~d~  986 (1120)
                      +.++.+++.+.+||.-+  .-|.|.+||+.+-     +.......|.   +.+.+++|+++|.+||+++++  .||||.+
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl-----~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINL-----QPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccc-----eeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            77777777788998533  3588999999883     3344455565   389999999999999997554  4999999


Q ss_pred             CCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCC--------------CcccCCCC---
Q 001224          987 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP--------------SAYLPAGV--- 1049 (1120)
Q Consensus       987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~--------------~~~~~~g~--- 1049 (1120)
                      .+|+.+.+|+-+.-...|.+++|+||+++|++.+..++|.||.++.-..-..-.+              ..++|..-   
T Consensus       204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~  283 (391)
T KOG2110|consen  204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV  283 (391)
T ss_pred             CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence            9999999988655567899999999999999999999999999875442110000              00111110   


Q ss_pred             -------------CCCCccceEEEecC-CCCCEEEEEeCCCcEEEEecCCC--CCCCCCCCCCCCCCCC
Q 001224         1050 -------------SSSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLES--EGKWGVPPPVDNGSTS 1102 (1120)
Q Consensus      1050 -------------~~~~v~~~~i~~~p-~d~~~l~s~~~Dg~v~vW~~~~~--~~~~~~~~p~~~~~~~ 1102 (1120)
                                   .+..-.  .+++.+ ....++..++.||.++.+.++-.  ...|-+.+-+-.++..
T Consensus       284 ~~~~R~FAt~~l~~s~~~~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~  350 (391)
T KOG2110|consen  284 LDQSRKFATAKLPESGRKN--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSID  350 (391)
T ss_pred             hhhccceeEEEccCCCccc--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccc
Confidence                         000001  233332 24578889999999999998764  3444444444334433

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=4.6e-14  Score=139.39  Aligned_cols=252  Identities=14%  Similarity=0.145  Sum_probs=175.5

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      ..+|+|.+|++|+.. +|++.+...|.||.......-.                ..+++..|...|++|.|+|..+.|++
T Consensus        10 ~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIvt   72 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIVT   72 (361)
T ss_pred             cCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCceeE
Confidence            478999999999994 9999999999999987654111                12358889999999999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee----EEeeccccCeE
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  519 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~  519 (1120)
                      |+.|..-+||....+...++...|..|...+++|.|+|.+.  .+++||.-+.|.||-.+...-=    +.-+.+...|.
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            99999999999965555667777888999999999999999  6999999999999987654321    12234677899


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec-ccccceeEEEEcCCCCEEEEE
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      ++.|++.+  -+|++|+.|+..|++..--.+. .+-.....+-..+   |-|...... ...+-+..+.|+|+|+.|+-.
T Consensus       151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~V-dekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGV-DEKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             eeeccCCc--ceecccccCcceeEEEEeeecc-ccCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            99998755  6899999999999985321000 0000000000000   000000000 223356667777788889999


Q ss_pred             eCCCeEEEEECCCCc-eeEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001224          599 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  642 (1120)
                      +.|..+.+=|..... .+.......  -+..++.|-.+...+++|
T Consensus       225 ~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~ag  267 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAAG  267 (361)
T ss_pred             cCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeecC
Confidence            999999999987664 233332221  245667776555444433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-13  Score=159.32  Aligned_cols=269  Identities=14%  Similarity=0.163  Sum_probs=180.0

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      -+.++..|...|..++.++....++++|+.||+|+|||...-..-. ..++           ...++.-...++.++.+.
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEec
Confidence            4556667999999999988774479999999999999986522110 0000           001233356789999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCC--ceee--eeeeeccc-cc-CeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH-VG-GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~--~~~~--~~~~l~~h-~~-~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      +.|..+|+++.||.|++.+++-.  ....  +......+ .+ .|..-+|....+...++.+..-+.|..||++....+.
T Consensus      1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred             cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence            99999999999999999998762  1111  11111222 22 3444455554443367888888999999999877766


Q ss_pred             Eee--ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC-CCceeEEEEcCCCCeEEecccccceeEE
Q 001224          510 IFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       510 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      +++  ...+.|++++.+  +.+.++++|+..|.+.+||++-..++.....+ ..++..+...|-..              
T Consensus      1188 ~lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~-------------- 1251 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP-------------- 1251 (1431)
T ss_pred             hhhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC--------------
Confidence            554  245789999975  44579999999999999999987766554433 23444444443322              


Q ss_pred             EEcCCCCEEEEE-e-CCCeEEEEECCCCceeEEEecCCC-----------------CCCcCeEEEcCCCCEEEEEECCCc
Q 001224          587 QFDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNG  647 (1120)
Q Consensus       587 ~~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~  647 (1120)
                          .....+++ + ..+.|.+|++.+|.+...+-....                 ........+...+..+.+|+.|..
T Consensus      1252 ----~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1252 ----QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred             ----CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc
Confidence                22334443 3 578899999999977666643211                 011122333345678899999999


Q ss_pred             EEEEEccCc
Q 001224          648 IKILATSDG  656 (1120)
Q Consensus       648 i~iwd~~~~  656 (1120)
                      |+.||....
T Consensus      1328 IR~wD~~~p 1336 (1431)
T KOG1240|consen 1328 IRKWDPTRP 1336 (1431)
T ss_pred             eeeccCCCc
Confidence            999998776

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.61  E-value=3.5e-11  Score=124.95  Aligned_cols=144  Identities=10%  Similarity=0.045  Sum_probs=108.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCc-eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          756 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                      +...|.-..+..+++.++.+..|| .+-|++.                      .++......    +.-+.|.++..++
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~  411 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP  411 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence            455677777777777788888887 6777765                      333322211    1456799999999


Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeeccccc
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      ||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+.-+|    .|++||+.+++....- ...+
T Consensus       412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta  489 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTA  489 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcc
Confidence            999999998 57899999999987666666777899999999 999999988776    6899999988755432 2333


Q ss_pred             ceEEEEEccCCCEEEEEe
Q 001224          910 RITGLAFSHALNVLVSSG  927 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s  927 (1120)
                      .=.+-+|.||+++|.--+
T Consensus       490 ~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccCcccCCCCcEEEEEe
Confidence            345678999999887554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=7.3e-12  Score=143.18  Aligned_cols=195  Identities=14%  Similarity=0.220  Sum_probs=152.0

Q ss_pred             ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC-----ceEEEEEcCCCCeE
Q 001224          367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGSLF  441 (1120)
Q Consensus       367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~~l  441 (1120)
                      |....+.-+.+ .++.++.++.+.|||...+.....                   . .+..     ...-+.++++.-++
T Consensus        90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~-------------------i-~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK-------------------I-QSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             ccccchhhhcc-eEEEEEcCceEEEEecccCceehh-------------------c-CCCceEEEEeEEEEeccCcEEEE
Confidence            33344555555 488889999999999987655431                   0 1111     22334567788899


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE-EeeccccCeEE
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYS  520 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~  520 (1120)
                      ++|+.-+.|.+|+.....   ....+.||.+.|.++.|+.||.  ++++.|+|.++|+|++++++... +.-+|...|+.
T Consensus       149 ~~gsv~~~iivW~~~~dn---~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDN---KPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA  223 (967)
T ss_pred             EeccccccEEEEeccccC---CcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence            999999999999988322   1114889999999999999999  79999999999999999998876 77789999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      ++|++.    .+++++.|-+.++|+.+....                     ..+.+|..+.++.++.+++...+++++.
T Consensus       224 ~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~  278 (967)
T KOG0974|consen  224 CCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGN  278 (967)
T ss_pred             EEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeecc
Confidence            998654    799999999999996653221                     2455566667788888888889999999


Q ss_pred             CCeEEEEECCCC
Q 001224          601 DFSIKFWDMDSV  612 (1120)
Q Consensus       601 dg~i~iwd~~~~  612 (1120)
                      ||.+++|++...
T Consensus       279 Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  279 DSTLKLWDLNGR  290 (967)
T ss_pred             Ccchhhhhhhcc
Confidence            999999998643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=9.3e-15  Score=153.54  Aligned_cols=238  Identities=11%  Similarity=0.156  Sum_probs=172.6

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  437 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d  437 (1120)
                      +.+|.+-|+|++|+.||. +|++|+.|-.+.|||+-..+.++.                  +-.||...|.++.|-|  +
T Consensus        46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence            567999999999999999 699999999999999998877775                  5789999999999999  6


Q ss_pred             CCeEEEEECCCeEEEEEccCCc-------eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-e-
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-Q-  508 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~-~-  508 (1120)
                      .+.+++|..|..|+++|+...+       ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++.... - 
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence            7889999999999999998522       12233456679999999999999966 799999999999999986321 1 


Q ss_pred             -----E---EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee-----eeCCCCceeEE-EEcCCCCeE
Q 001224          509 -----Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTM-AYSADGTRT  574 (1120)
Q Consensus       509 -----~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~-~~s~~g~~~  574 (1120)
                           .   .+...--...++.+++... .+|+.|+.|--.++||.+...+...     ...+.....++ -|+|.+-+.
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                 1   1111122345667776554 6999999999999999643222110     01111112222 245554433


Q ss_pred             Eecccccc---eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 001224          575 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  618 (1120)
Q Consensus       575 ~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  618 (1120)
                      ..|.....   .+.+.|+|+|..|+..-..-.|+++|+..++....+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            33322222   455789999998888766778999999887765544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=5.1e-13  Score=147.20  Aligned_cols=325  Identities=11%  Similarity=0.120  Sum_probs=197.9

Q ss_pred             EEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001224          531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  610 (1120)
Q Consensus       531 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  610 (1120)
                      ++++-..++.|.+.|..+.+....+.........+.++|||                     +++++++.||.|.++|+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg---------------------r~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG---------------------RYLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S---------------------SEEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC---------------------CEEEEEcCCCeEEEEECC
Confidence            34566678999999999877777666554433344555555                     478888899999999999


Q ss_pred             CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhH
Q 001224          611 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA  689 (1120)
Q Consensus       611 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1120)
                      +++.+.++....   ...++++|+||++++++. .++.+.++|..+. +.++.+......                    
T Consensus        67 ~~~~v~~i~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~--------------------  122 (369)
T PF02239_consen   67 TGKVVATIKVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP--------------------  122 (369)
T ss_dssp             SSSEEEEEE-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE---------------------
T ss_pred             cccEEEEEecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeeccccccc--------------------
Confidence            999999987543   367899999999998775 5899999998876 444433211100                    


Q ss_pred             hhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC
Q 001224          690 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  769 (1120)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g  769 (1120)
                                                                                     ......++.++..++..
T Consensus       123 ---------------------------------------------------------------~~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen  123 ---------------------------------------------------------------VDGPESRVAAIVASPGR  139 (369)
T ss_dssp             ---------------------------------------------------------------TTTS---EEEEEE-SSS
T ss_pred             ---------------------------------------------------------------ccccCCCceeEEecCCC
Confidence                                                                           00123566777778877


Q ss_pred             ceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCc
Q 001224          770 NAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK  846 (1120)
Q Consensus       770 ~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~  846 (1120)
                      ..++..-. .+.|.+-|+....                     .+....+.   .........|+|++++++++.  ++.
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CEEEEEEccCCeEEEEEecccc---------------------ccceeeec---ccccccccccCcccceeeecccccce
Confidence            75555544 4766665542210                     00000000   233455789999999988875  678


Q ss_pred             EEEEEcCCCceeeeec----CCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          847 ISLFNMMTFKTMATFM----PPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       847 i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      |.++|.++++.+..+.    .|......+ .+|.         .+...++.-....+.+||..+++.++++...... ..
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF  273 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF  273 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred             eEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence            9999999987776543    233333332 1221         1222222222345667888889999999887776 78


Q ss_pred             EEEccCCCEEEEE----eCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEc
Q 001224          914 LAFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFET  986 (1120)
Q Consensus       914 l~~s~d~~~l~s~----s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~---~d~~v~i~d~  986 (1120)
                      +..+|++++|...    ...++|.++|.++.+..  ..+....+     ..+..+.|++||+++.++   .++.|.+||.
T Consensus       274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~--~~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV--KTITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE--E-HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             eecCCCCccEEeeccCCCCCceEEEEECcCccee--EEEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            8899999999887    45588999999985321  11111111     137899999999988773   4448999999


Q ss_pred             CCceeeeccc
Q 001224          987 TKLECVKQWV  996 (1120)
Q Consensus       987 ~~~~~~~~~~  996 (1120)
                      .+.+.+..+.
T Consensus       347 ~Tl~~~~~i~  356 (369)
T PF02239_consen  347 KTLKEKKRIP  356 (369)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            9999987765

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.3e-13  Score=157.88  Aligned_cols=222  Identities=13%  Similarity=0.131  Sum_probs=145.0

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ..+..|...+.+.+|||||++|+.++..+  ..|.+||+.+++.....                 .+.+|   ..+++||
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wS  256 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFS  256 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeEC
Confidence            34456788999999999999754444332  47999999887643210                 12233   3468999


Q ss_pred             CCCCeEEEEE-CCCeEEEE--EccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEe
Q 001224          436 PDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF  511 (1120)
Q Consensus       436 pdg~~las~~-~dg~v~iw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~  511 (1120)
                      |||++|+.++ .+|.+.||  |+.++...    .+..|...+.+.+|+|||+. +++++..++...||++... .....+
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence            9999999865 67866655  66665532    36667778899999999995 3444556788888887532 223333


Q ss_pred             eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          512 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                       .+..  ....|  +++|++|+..+.++ +.+||+.++........  ....                     ...|+|+
T Consensus       332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPd  382 (429)
T PRK01742        332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPN  382 (429)
T ss_pred             -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCC
Confidence             3433  33455  45667888777765 55588876543221111  0111                     2456666


Q ss_pred             CCEEEEEeCCCeEEEEEC--CCCceeEEEecCCCCCCcCeEEEcCC
Q 001224          592 KNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD  635 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~  635 (1120)
                      |++++.++.++.+.+|++  .+|+.+..+..+.+  .+..++|+|-
T Consensus       383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence            678999988898888875  35777777765433  5778899884

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4e-13  Score=153.98  Aligned_cols=224  Identities=14%  Similarity=0.139  Sum_probs=148.5

Q ss_pred             CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceee
Q 001224          386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR  462 (1120)
Q Consensus       386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~  462 (1120)
                      +..|.|||.......                    .+..|...|.+.+|||||++||.++.+   ..|.+||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998755422                    256688899999999999999988654   479999999876332


Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEE-ecCCCcEEEE--ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cC
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD  538 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s-~s~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d  538 (1120)
                       ...+.+|   ...++|+|||+.  |+. .+.+|.+.||  |+.++. ...+..+...+....|++  +|+.|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2234444   446899999995  444 4567776555  655555 455666777777788855  456665544 57


Q ss_pred             CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 001224          539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  618 (1120)
Q Consensus       539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  618 (1120)
                      |...+|+++..........+..                       ....|+|+|++++.++.++ +.+||+.+++.....
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS  369 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence            8888998764332221111111                       1234666667787777655 556999888755332


Q ss_pred             ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--Ccchhhhhccccc
Q 001224          619 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA  667 (1120)
Q Consensus       619 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~  667 (1120)
                      ...    ....++|+|||++|+.++.++.+.+|.+.  ++ ...+.+..+.
T Consensus       370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~  415 (429)
T PRK01742        370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD  415 (429)
T ss_pred             CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence            221    23568899999999999999998888763  34 4455554443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.57  E-value=5.7e-13  Score=150.15  Aligned_cols=283  Identities=11%  Similarity=0.041  Sum_probs=188.8

Q ss_pred             CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eE
Q 001224          539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LT  616 (1120)
Q Consensus       539 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~  616 (1120)
                      +.+.+|+++........-.....|.++.|+|...                    +.++.|+.+|.|.+||++.+..  ..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--------------------~ll~gG~y~GqV~lWD~~~~~~~~~s  281 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--------------------NLLAGGCYNGQVVLWDLRKGSDTPPS  281 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCc--------------------ceEEeeccCceEEEEEccCCCCCCCc
Confidence            3788999987643333333344556666655544                    5677788999999999987765  22


Q ss_pred             E--EecCCCCCCcCeEEEcCCC--CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhh
Q 001224          617 S--IDADGGLPASPRIRFNKDG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  692 (1120)
Q Consensus       617 ~--~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1120)
                      .  ...+.|...+..+.|..+.  .-+++++.||.|..|+++.-..............                      
T Consensus       282 ~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----------------------  339 (555)
T KOG1587|consen  282 GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----------------------  339 (555)
T ss_pred             ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----------------------
Confidence            2  2334566678888887644  4489999999999997754322221111100000                      


Q ss_pred             hccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC-Cce
Q 001224          693 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNA  771 (1120)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-g~~  771 (1120)
                                                                         ..      ........++++.|.+. -..
T Consensus       340 ---------------------------------------------------~~------~~~~~~~~~t~~~F~~~~p~~  362 (555)
T KOG1587|consen  340 ---------------------------------------------------KG------QQSSKAVGATSLKFEPTDPNH  362 (555)
T ss_pred             ---------------------------------------------------cc------cccccccceeeEeeccCCCce
Confidence                                                               00      00113355677888764 445


Q ss_pred             EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC--cccccCCCCCCCCCccEEEEccCCCEEE-EEeCCcEE
Q 001224          772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI--MMTNDVTDSNPEEAVPCFALSKNDSYVM-SASGGKIS  848 (1120)
Q Consensus       772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~-~~sdg~i~  848 (1120)
                      +++|+..|.|.--+...                   ...+.  ..........|.++|.++.++|-+..++ +++|-+++
T Consensus       363 FiVGTe~G~v~~~~r~g-------------------~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vr  423 (555)
T KOG1587|consen  363 FIVGTEEGKVYKGCRKG-------------------YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVR  423 (555)
T ss_pred             EEEEcCCcEEEEEeccC-------------------CcccccccccccccccccCcceEeeecCCCccceeeeeccceeE
Confidence            77888888877522111                   11111  0000001123889999999999776544 45599999


Q ss_pred             EEEcC-CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc--eeeEeecccccceEEEEEccCCCEEEE
Q 001224          849 LFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVS  925 (1120)
Q Consensus       849 vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s  925 (1120)
                      ||... ....+..+..+...+++++|||.....+|++..||.|.+||+...  +.+....-+....+.+.|+++|+.|+.
T Consensus       424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             eccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence            99988 666666777777789999999976789999999999999999753  344444445666778889999999999


Q ss_pred             EeCCCCEEEEECCC
Q 001224          926 SGADSQLCVWSSDG  939 (1120)
Q Consensus       926 ~s~Dg~v~iWd~~~  939 (1120)
                      |+..|++.+|++..
T Consensus       504 Gd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  504 GDANGTTHILKLSE  517 (555)
T ss_pred             ecCCCcEEEEEcCc
Confidence            99999999999975

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.57  E-value=3.1e-13  Score=133.59  Aligned_cols=245  Identities=15%  Similarity=0.144  Sum_probs=182.5

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC---CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-  897 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-  897 (1120)
                      ...+|+|.+|++|+..+|++. ...|.||....   .+...++..|...|+++.|+| ..+.|++++.|..-+||...+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            457899999999999999998 67899998865   446788999999999999999 888999999999999999843 


Q ss_pred             --ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                        .+....+..|...+++|.|+|.++.+|+|+.-+.|.||=++....  .-.-+....  +....|+++.|+|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikk--PirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKK--PIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCC--ccccceeeeeccCCcceecc
Confidence              345556677899999999999999999999999999998776321  111111111  11247899999999999999


Q ss_pred             E-eCCeEEEEEcC-----C-------------ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          976 V-HETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       976 ~-~d~~v~i~d~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      | .|+..+||..-     +             |+++.++.  ...+.|..+.|+|+|..|+-.+.|++|.+-|.......
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER  241 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence            5 89998888742     1             22223332  34788999999999999999999999999998877532


Q ss_pred             eeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1037 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1037 ~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      ........+|         .+++.|..  .+.++.++.|..-.++...+
T Consensus       242 v~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~~  279 (361)
T KOG1523|consen  242 VQSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTDE  279 (361)
T ss_pred             ccchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEecc
Confidence            2222122233         23667765  35666666775545554443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=8e-13  Score=130.82  Aligned_cols=240  Identities=14%  Similarity=0.206  Sum_probs=169.2

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCC--eEEEEEecCCCcEEEE-EeCC------CcEEEEEe
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAI-GMDD------SSIQIYNV  895 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~las-g~~d------g~v~vwd~  895 (1120)
                      ....+++|+.|..-+++|.|...+||+.+-.+.......+.+.  +.-|-|-   .++||. |+.+      ..|.|||-
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            3455699999999999999988999998864443332222222  3333332   344543 3333      37999996


Q ss_pred             ecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc--CCcEE
Q 001224          896 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHF  973 (1120)
Q Consensus       896 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--dg~~l  973 (1120)
                      ...+++.++. ...+|.+|.+++|  .|+..- .+.|.||.....-+. ...+.+....    ..  -++..|  +..+|
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kG--lC~~~~~~~k~~L  151 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KG--LCSLCPTSNKSLL  151 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----Cc--eEeecCCCCceEE
Confidence            6677777776 5688999999866  455443 567999998853322 1122222111    12  233334  34455


Q ss_pred             EE-E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCC
Q 001224          974 LV-V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVS 1050 (1120)
Q Consensus       974 a~-~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~ 1050 (1120)
                      |. | .-|.|.|-|+...+.-......+|.+.|.+++.+-+|.++|++|..|+ |||||..+|++++.+.      .|..
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d  225 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVD  225 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCc
Confidence            55 4 668999999987665333344589999999999999999999999998 9999999999998876      3434


Q ss_pred             CCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1051 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1051 ~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ...++  .++|+| |..+|++.|+-|+|+|+.+...+
T Consensus       226 ~A~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  226 RADIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             hheEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            44477  999999 68999999999999999998755

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=2.1e-12  Score=142.39  Aligned_cols=322  Identities=15%  Similarity=0.114  Sum_probs=190.3

Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  565 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  565 (1120)
                      +++++-..++.|.|.|..+.+.+.++......-..+.+  ++||++++.++.||.|.++|+.+.+...++... ....++
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i   83 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGI   83 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceE
Confidence            46678888999999999999999999865443333454  567789999999999999999998766655442 234555


Q ss_pred             EEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCC-----CCCcCeEEEcCCCCEE
Q 001224          566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL  639 (1120)
Q Consensus       566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l  639 (1120)
                      ++++||+                     +++++ ..++.+.++|.++.+.+..+.....     ...+..+..+|....+
T Consensus        84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence            5555554                     66655 4799999999999999988764321     1245567778887766


Q ss_pred             EEEECC-CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccC
Q 001224          640 AVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA  718 (1120)
Q Consensus       640 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (1120)
                      +..-.| +.|.+.|..+........                                                       
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~~~-------------------------------------------------------  167 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKVTT-------------------------------------------------------  167 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred             EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence            655554 667666654431100000                                                       


Q ss_pred             CCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEec-cCceEEEeeecccccCCCCcc
Q 001224          719 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKA  797 (1120)
Q Consensus       719 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~  797 (1120)
                                      .+                   .........|+|++++++++. ....+-++|..+...      
T Consensus       168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------  206 (369)
T PF02239_consen  168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------  206 (369)
T ss_dssp             ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred             ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence                            00                   112334578888888776643 346777777543221      


Q ss_pred             ccccCceeecCCCCCcccccCCCCCCCCCccE-------EEE--ccCCCEEEE-EeCCcEEEEEcCCCceeeeecCCCCC
Q 001224          798 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-------FAL--SKNDSYVMS-ASGGKISLFNMMTFKTMATFMPPPPA  867 (1120)
Q Consensus       798 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-------l~~--s~d~~~l~~-~sdg~i~vwd~~~~~~~~~~~~~~~~  867 (1120)
                             +.....|...        |..+...       ..|  ...+...++ .+.+.+.+||..+++.++++....++
T Consensus       207 -------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  207 -------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             -------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             -------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence                   1111111110        1111111       111  223333322 23456778999999999999877666


Q ss_pred             eEEEEEecCCCcEEEEE----eCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEEEEEeCC--CCEEEEECCCc
Q 001224          868 ATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGW  940 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~v~iWd~~~~  940 (1120)
                       .-+..+| +++++.+.    ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+  +.|.|||..+.
T Consensus       272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence             8888899 89999887    455899999999998887775332 358899999999977544443  36999999996


Q ss_pred             cccc
Q 001224          941 EKQK  944 (1120)
Q Consensus       941 ~~~~  944 (1120)
                      +...
T Consensus       350 ~~~~  353 (369)
T PF02239_consen  350 KEKK  353 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6533

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=2.3e-12  Score=129.40  Aligned_cols=290  Identities=12%  Similarity=0.148  Sum_probs=185.8

Q ss_pred             cceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccc
Q 001224          721 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  800 (1120)
Q Consensus       721 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  800 (1120)
                      ..++++..|..|++|+-.. ..+..++      ......|++++|-|.+...++.+-.+.|.+|.........-      
T Consensus       111 ~~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r------  177 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR------  177 (445)
T ss_pred             hhhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc------
Confidence            4567888999999999776 2222222      23567899999999876666666667889998643211000      


Q ss_pred             cCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC
Q 001224          801 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN  878 (1120)
Q Consensus       801 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~  878 (1120)
                       .++.    -+......+.+.+| ..|+++.|.+||..+++++  |..|.|||.+++..+.......+.++-+.||| |+
T Consensus       178 -~~~~----~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg  250 (445)
T KOG2139|consen  178 -NIRM----MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG  250 (445)
T ss_pred             -cccc----ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence             0000    00011111223334 8899999999999999998  68899999999887766545567899999999 89


Q ss_pred             cEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc----------cee-
Q 001224          879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK----------NRF-  947 (1120)
Q Consensus       879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~----------~~~-  947 (1120)
                      .+|..++-|+..++|+............-++.|..-+|+|+|++|..+.. |.-++|.+....+..          ... 
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence            99999999999999955433223333334558999999999998765443 334555543321110          000 


Q ss_pred             -----eeccCCCCCCCCCCcEEEEccCCcEEEEEeCC---------eEEEEEcCCceeeeccccCC-CCCCeeEEEECC-
Q 001224          948 -----LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC- 1011 (1120)
Q Consensus       948 -----~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~---------~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~- 1011 (1120)
                           .....+.....+.+.+++|.|.|.+||+...+         .|.+||....-.+.....+. .......|+|.| 
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl  409 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL  409 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence                 01111222223578999999999999995332         36677776554433321110 122356677776 


Q ss_pred             --CCcEEEEEEcCCcEEEEEcC
Q 001224         1012 --DSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus      1012 --dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                        +|.+|..+-..|.+.-|++.
T Consensus       410 ~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  410 KNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ccCCcEEEEEeccCceEeeeeE
Confidence              67778777777888777753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=7.5e-13  Score=139.52  Aligned_cols=214  Identities=15%  Similarity=0.186  Sum_probs=151.8

Q ss_pred             ccCCCEEEEEe-CCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224          833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                      .+.+--+.+|- -|.|.+.|....+..+.+..    ....++|+.|-|.+...+.++-.+|.+++||..          +
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~  251 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------I  251 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------c
Confidence            35565666776 68888888765333222221    246799999999777788888899999999962          1


Q ss_pred             ccceEEEEEc--cCCCEEEEEeC-----CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCC
Q 001224          908 SKRITGLAFS--HALNVLVSSGA-----DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  979 (1120)
Q Consensus       908 ~~~V~~l~~s--~d~~~l~s~s~-----Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~  979 (1120)
                      ....+...|.  +++..++....     +.-+.-|-+-.                   +.|...+|+|||++||+ +.||
T Consensus       252 ~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~-------------------g~in~f~FS~DG~~LA~VSqDG  312 (636)
T KOG2394|consen  252 VCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE-------------------GSINEFAFSPDGKYLATVSQDG  312 (636)
T ss_pred             cccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc-------------------ccccceeEcCCCceEEEEecCc
Confidence            1222222222  34444432211     12222232222                   37899999999999999 7999


Q ss_pred             eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEE
Q 001224          980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i 1059 (1120)
                      .++|||..+.+++....  ..-+...|++|||||+|+++|++|-.|.||.+...+.+++-+       || ..+|.  .+
T Consensus       313 fLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-------GH-kSWVs--~V  380 (636)
T KOG2394|consen  313 FLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-------GH-KSWVS--VV  380 (636)
T ss_pred             eEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-------cc-cccee--eE
Confidence            99999999988876654  346789999999999999999999999999999999998755       43 45566  66


Q ss_pred             EecCC-----------------------------------------------CCCEEEEEeCCCcEEEEecCCCC
Q 001224         1060 AAHPQ-----------------------------------------------EPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1060 ~~~p~-----------------------------------------------d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +|.|-                                               ....+.+++.|-.+.+||+.+..
T Consensus       381 aFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  381 AFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             eecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence            66620                                               11357889999999999999876

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=9e-12  Score=135.20  Aligned_cols=545  Identities=10%  Similarity=0.093  Sum_probs=308.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      .+....|++|+....+ +|+|+.||.++|-.+.+...-.    +.-.+...+.-.-...+.||.+.|..+.|+.+.+.|-
T Consensus        13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~----~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDL----NKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCcc----cccccccccccchhhhhccCcceEEEEEecccccccc
Confidence            4567789999999985 9999999999999987643221    1111222233333457999999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-EEeeccccCeEEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV  521 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~  521 (1120)
                      +...+|.|.||-+-.|.-.... .-....+.|.+++|+.||.+  +...-.||.|.|=.++..+.- +.+++.  ....+
T Consensus        88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv  162 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV  162 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence            9999999999999887654321 12335668999999999995  666667777766554322111 122221  12235


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc-eeE-EEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      .|+  +|...++.+-..|.+.++|....-.+   ..+... |+. -.++.-+.+ +.++....-...-..|+...|+.+.
T Consensus       163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence            554  44456677777899999987532111   000000 111 112211211 0111100111122356788999999


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  679 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1120)
                      ..|.+.|..-.+...-..+...   ..+....|+++|..|++++.+..-     ... .-.       ..+.        
T Consensus       237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da-----~~~-~d~-------n~v~--------  292 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDA-----DEP-TDS-------NKVH--------  292 (1189)
T ss_pred             cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccc-----cCc-ccc-------ceEE--------
Confidence            9999998876554433333322   257889999999999998875210     000 000       0000        


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224          680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  759 (1120)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  759 (1120)
                      -++|.|                                                          .....+..    ....
T Consensus       293 Fysp~G----------------------------------------------------------~i~gtlkv----pg~~  310 (1189)
T KOG2041|consen  293 FYSPYG----------------------------------------------------------HIVGTLKV----PGSC  310 (1189)
T ss_pred             Eeccch----------------------------------------------------------hheEEEec----CCce
Confidence            111111                                                          11112222    2256


Q ss_pred             EEEEEEcCCCceEEEeccCceEEEeeeccc--------c--cCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          760 ISRLIFTNSGNAILALASNAIHLLWKWQRT--------E--RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       760 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~--------~--~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                      |++++|-..|-.++.+ -|+.|++=++..+        +  +--.+.......+.+||..+.+....      .-....+
T Consensus       311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK------~V~~~~~  383 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK------TVTHFEN  383 (1189)
T ss_pred             eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh------hhcceee
Confidence            6677776666544333 3344444333211        0  00011222233567888877764332      2233456


Q ss_pred             EEEccCCCEEEEEe-CCcEEEEEc-CCCceeeee----------cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          830 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-dg~i~vwd~-~~~~~~~~~----------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      +++..+--.++.-. +|.|.-++. ++...+..+          ...-..|.-. |-..++.+++.++.+ .+.+|....
T Consensus       384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~-Fv~vn~~~vviAS~e-~~~iWhy~~  461 (1189)
T KOG2041|consen  384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPK-FVCVNGICVVIASEE-RYFIWHYVL  461 (1189)
T ss_pred             hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeee-EEEecceEEEEeccc-cEEEEEEec
Confidence            66665544444444 565554422 111111111          1011112111 222256677777766 678887642


Q ss_pred             cee--------------------------------eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224          898 DEV--------------------------------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  945 (1120)
Q Consensus       898 ~~~--------------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~  945 (1120)
                      .+.                                ..++.|..++|.+++.+  .++|..+-..|.|.-|.+......  
T Consensus       462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~--  537 (1189)
T KOG2041|consen  462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT--  537 (1189)
T ss_pred             cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee--
Confidence            110                                13445667788888886  578888999999999998874322  


Q ss_pred             eeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC---CceeeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224          946 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       946 ~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                         +...    ....+..+...-+...+|+ ---|.+.+.|+.   +|..+..+. ..-...|+.+.|..|...|++--+
T Consensus       538 ---n~y~----~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlme  609 (1189)
T KOG2041|consen  538 ---NSYP----VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALME  609 (1189)
T ss_pred             ---eccc----cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhh
Confidence               1111    1236788999888888887 466778888775   344443322 123678999999988876665555


Q ss_pred             CCcEEEEEc
Q 001224         1022 DATVCVFSA 1030 (1120)
Q Consensus      1022 Dg~v~iwd~ 1030 (1120)
                      -..++|++-
T Consensus       610 Ktrmyifrg  618 (1189)
T KOG2041|consen  610 KTRMYIFRG  618 (1189)
T ss_pred             hceEEEecC
Confidence            555666653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=3.5e-12  Score=128.04  Aligned_cols=286  Identities=12%  Similarity=0.138  Sum_probs=188.4

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      .+..+..++|++.-..+++++.|-.|++|+-...                    ....+.     ......|+|++|-|.
T Consensus        97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst--------------------~pt~Lk-----s~sQrnvtclawRPl  151 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST--------------------CPTKLK-----SVSQRNVTCLAWRPL  151 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCcEEEEeccCCC--------------------CCceec-----chhhcceeEEEeccC
Confidence            3456788999997777889999999999974210                    000111     114677999999996


Q ss_pred             C-CEEEEEeCCcEEEEEcCCC----ce----------eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001224          836 D-SYVMSASGGKISLFNMMTF----KT----------MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE  899 (1120)
Q Consensus       836 ~-~~l~~~sdg~i~vwd~~~~----~~----------~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~  899 (1120)
                      + +.+++|..+.|.+|.....    ..          +...++| ..|++|+|.+ ||..+++++ .|..|.|||..++.
T Consensus       152 saselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  152 SASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             CcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCC
Confidence            5 5677888889999987521    11          1112333 5799999999 787887776 56799999999988


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  978 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d  978 (1120)
                      .+....-..+.++-+.|||||.+|..+.-|+..++|+.. +......     ..+    .+.|...+|+|+|++|..+.-
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-----~lg----sgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-----ILG----SGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-----ecc----CCceeeeeecCCCCEEEEEEc
Confidence            765554455678899999999999999999999999543 3322221     111    137889999999999988766


Q ss_pred             CeEEEEEcCCceeeecc------------------ccCC----CCCCeeEEEECCCCcEEEEEEcCC--------cEEEE
Q 001224          979 TQLAIFETTKLECVKQW------------------VPRE----SSAPITHATFSCDSQLVYACFLDA--------TVCVF 1028 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~------------------~~~~----h~~~v~~l~~s~dg~~l~s~~~Dg--------~v~iw 1028 (1120)
                      +.-++|.+.-...-..+                  ....    -.+++.+++|.|.|.|||+....+        .|.+|
T Consensus       301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~f  380 (445)
T KOG2139|consen  301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRF  380 (445)
T ss_pred             CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhh
Confidence            66666655321110000                  0001    157889999999999999876443        36667


Q ss_pred             EcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCCCcEEEEecC
Q 001224         1029 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1029 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      |....-.... .+..+..+      -.|-.++|+|.  ++.+|..+=+.|.+.-+.+.
T Consensus       381 dtr~sp~vel-s~cg~i~g------e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  381 DTRKSPPVEL-SYCGMIGG------EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cccccCceEE-EecccccC------CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            7554333221 11122221      22445777764  45567777777777666543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=4.3e-12  Score=134.88  Aligned_cols=302  Identities=14%  Similarity=0.152  Sum_probs=203.0

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      +.-+++...-+.|..+|||+|++|+|...-.|++||+..-.....+.+                   ....|.-.-+|.|
T Consensus        45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD  105 (703)
T KOG2321|consen   45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDD  105 (703)
T ss_pred             HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccc
Confidence            445668889999999999999999999999999999976443321110                   2235666667777


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      -..++.-..|.+|.+..--+ ....    ++- ...-..++++.-.-.  |..++....|+-++++.|..+..+....+.
T Consensus       106 ~SK~v~L~~DR~IefHak~G-~hy~----~RI-P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~  177 (703)
T KOG2321|consen  106 YSKSVFLQNDRTIEFHAKYG-RHYR----TRI-PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGE  177 (703)
T ss_pred             hhhheEeecCceeeehhhcC-eeee----eec-CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccccc
Confidence            77777777888777654332 1111    110 112233444433332  444445567899999999999999888889


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      ++++.+++-.  .+|++|+.+|.|.+||.+.......+..... |.+.   |.      +.....++.+.|+.+|-.+++
T Consensus       178 lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---pg------~~~~~svTal~F~d~gL~~aV  245 (703)
T KOG2321|consen  178 LNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---PG------GDAAPSVTALKFRDDGLHVAV  245 (703)
T ss_pred             ceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCC---cc------ccccCcceEEEecCCceeEEe
Confidence            9988875433  5888888899999999998666555443322 1111   11      111225667777777778999


Q ss_pred             EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          598 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      |..+|.+.|||+++.+++..-. |....+|..+.|.+.  +..+++ .+...++|||-.+| +....++....       
T Consensus       246 Gts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~G-k~~asiEpt~~-------  315 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTG-KPMASIEPTSD-------  315 (703)
T ss_pred             eccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEe-cchHHhhhcccccC-CceeeccccCC-------
Confidence            9999999999999998877665 444567888999774  344544 34578999998888 33333321111       


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  743 (1120)
                                                         -.+..+.+++..++++-.+..+..|-++.....
T Consensus       316 -----------------------------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPa  348 (703)
T KOG2321|consen  316 -----------------------------------LNDFCFVPGSGMFFTANESSKMHTYYIPSLGPA  348 (703)
T ss_pred             -----------------------------------cCceeeecCCceEEEecCCCcceeEEccccCCC
Confidence                                               124455678888899988888877777665443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=1.7e-13  Score=141.76  Aligned_cols=282  Identities=11%  Similarity=0.127  Sum_probs=214.2

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      .....+.++.+|+.++.++.-|.+..+|+.+                      +.+... +   .-...|..+.|-.+.+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~E-i---~v~Etv~Dv~~LHneq  183 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFE-I---NVMETVRDVTFLHNEQ  183 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeee-e---ehhhhhhhhhhhcchH
Confidence            3446788999999999999999999888743                      222211 1   1346688899999999


Q ss_pred             EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224          838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      ++|++....++|||-. |..+..++.| ..|..+.|-| ---+|++++..|.++--|+.+|+.+..+..-.+.+..|+-+
T Consensus       184 ~~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  184 FFAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             HHHhhhhceEEEecCC-CcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence            9999998999999954 5666666644 4599999999 88899999999999999999999999999888999999999


Q ss_pred             cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccc
Q 001224          918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~  996 (1120)
                      |-+-.+-+|...|+|.+|.....+     ++.....|.   ++|.++++.++|+|+|+ |.|..++|||+++...+.+..
T Consensus       261 P~NaVih~GhsnGtVSlWSP~ske-----PLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  261 PYNAVIHLGHSNGTVSLWSPNSKE-----PLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             CccceEEEcCCCceEEecCCCCcc-----hHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            999999999999999999987733     233333444   48999999999999999 799999999999888766655


Q ss_pred             cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE-cCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC
Q 001224          997 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus       997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D 1075 (1120)
                      .   .-+...++||..|  +++.+....|.||. ...+..-....+....-    +..|.  .+.|.|- .+.|-+|...
T Consensus       333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~----~~~V~--~l~FcP~-EDvLGIGH~~  400 (545)
T KOG1272|consen  333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRC----GGPVE--DLRFCPY-EDVLGIGHAG  400 (545)
T ss_pred             c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhcc----Ccccc--cceeccH-HHeeeccccC
Confidence            3   3456778888655  33445566799995 32222111111111111    12344  8999995 5789999988


Q ss_pred             CcEEEEecCCCCC
Q 001224         1076 GGVHVFEPLESEG 1088 (1120)
Q Consensus      1076 g~v~vW~~~~~~~ 1088 (1120)
                      |--.+.-+-.||.
T Consensus       401 G~tsilVPGsGeP  413 (545)
T KOG1272|consen  401 GITSILVPGSGEP  413 (545)
T ss_pred             CceeEeccCCCCC
Confidence            8888887888883

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.48  E-value=5.3e-13  Score=140.64  Aligned_cols=157  Identities=19%  Similarity=0.273  Sum_probs=117.4

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe---------eceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      .+..|+|+.|-|-++.++.++-.+|.+++||..-.-....         ..|.+-.........+..-+.--.+.|..++
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            3589999999998888888888899999998632110000         0000100000000011111222345899999


Q ss_pred             EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224          434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      |||||++||+.+.||.++|+|..+.+.+.   .++.--+...|++|||||+  ||++|+.|-.|.||.+..++.+..-+|
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence            99999999999999999999999977555   3444457899999999999  899999999999999999999999999


Q ss_pred             cccCeEEEeec
Q 001224          514 HEAPVYSVCPH  524 (1120)
Q Consensus       514 h~~~v~~~~~~  524 (1120)
                      |..+|..++|.
T Consensus       373 HkSWVs~VaFD  383 (636)
T KOG2394|consen  373 HKSWVSVVAFD  383 (636)
T ss_pred             cccceeeEeec
Confidence            99999999986

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.7e-10  Score=125.62  Aligned_cols=480  Identities=12%  Similarity=0.127  Sum_probs=277.1

Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCce------------eeeeeeecccccCeEEEEEcCCCCceEEEEec
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  492 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s  492 (1120)
                      ......|++|+....|+|+|+.||.++|-.+.+...            +....++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            455789999999999999999999999998765321            111246889999999999999888  488999


Q ss_pred             CCCcEEEEECCCCceeEEe--eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224          493 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       493 ~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  570 (1120)
                      .+|.|.||-+-.|.....+  ....+.|.+++|.  .+|..+.....||.|                             
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGav-----------------------------  139 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAV-----------------------------  139 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCE-----------------------------
Confidence            9999999998887654322  2234557777774  455666666666655                             


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  650 (1120)
                                               ++|+-||. +||.-+-       ++.    ....+.|++|.+.++.+-.+|.+.+
T Consensus       140 -------------------------IVGsvdGN-RIwgKeL-------kg~----~l~hv~ws~D~~~~Lf~~ange~hl  182 (1189)
T KOG2041|consen  140 -------------------------IVGSVDGN-RIWGKEL-------KGQ----LLAHVLWSEDLEQALFKKANGETHL  182 (1189)
T ss_pred             -------------------------EEEeeccc-eecchhc-------chh----eccceeecccHHHHHhhhcCCcEEE
Confidence                                     33444443 4554321       100    1234778888777777777788888


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC-cccccCCCcceeeccCC
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESN  729 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d  729 (1120)
                      +|........-....... +..       .|+..+                ..+....-+.+ .....|+...++++...
T Consensus       183 ydnqgnF~~Kl~~~c~Vn-~tg-------~~s~~~----------------~kia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  183 YDNQGNFERKLEKDCEVN-GTG-------IFSNFP----------------TKIAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             ecccccHHHhhhhceEEe-eee-------eecCCC----------------ccccceeeccCccccCCCCCCEEEEEEcC
Confidence            876544221111100000 000       011000                00111111122 22334578889999999


Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  809 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~  809 (1120)
                      |.+.+..-.+...+....        ..-.+..+.|+++|..+++++.+....             ....+..++++.+.
T Consensus       239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~-------------~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDAD-------------EPTDSNKVHFYSPY  297 (1189)
T ss_pred             ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCccccc-------------CccccceEEEeccc
Confidence            988887766544433322        236788899999999999888762210             00011122333332


Q ss_pred             CCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224          810 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  889 (1120)
Q Consensus       810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~  889 (1120)
                      ....-.  ++.  ....|++++|-..|-.+|.+-|+.|.+-+++..-.-..+.      ..+.|-.+...     .-..-
T Consensus       298 G~i~gt--lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e------~TvVy~y~~~e-----~p~y~  362 (1189)
T KOG2041|consen  298 GHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE------ETVVYVYQKEE-----LPQYG  362 (1189)
T ss_pred             hhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee------eEEEEEEccCC-----CcceE
Confidence            222111  111  5678999999999999999999999988876321111111      11111110100     01234


Q ss_pred             EEEEEeecceee-EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce-eeeccCCCCCC--CCCCcEEE
Q 001224          890 IQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-FLQIPTGRTPT--AQSDTRVQ  965 (1120)
Q Consensus       890 v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~~~~~~--~~~i~~~~  965 (1120)
                      |.+||..+.+.. +... |   ..+++|+.+.-.|+.-..|+.+.-++.-........ .+...-|..-.  ...|.-.-
T Consensus       363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~F  438 (1189)
T KOG2041|consen  363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKF  438 (1189)
T ss_pred             EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeE
Confidence            789998876532 2222 2   346788888778888888888776632111110000 01111110000  01122222


Q ss_pred             EccCCcEEEEEeCCeEEEEEcCCcee-------------------------eeccc-----cCCCCCCeeEEEECCCCcE
Q 001224          966 FHQDQIHFLVVHETQLAIFETTKLEC-------------------------VKQWV-----PRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus       966 fspdg~~la~~~d~~v~i~d~~~~~~-------------------------~~~~~-----~~~h~~~v~~l~~s~dg~~ 1015 (1120)
                      ..-++.++++++...+.+|....-+.                         -+++.     ..+...+|..++.|  .++
T Consensus       439 v~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~  516 (1189)
T KOG2041|consen  439 VCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKF  516 (1189)
T ss_pred             EEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceE
Confidence            23366777777777788887532211                         01111     11346788888875  678


Q ss_pred             EEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1016 VYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1016 l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      |..+-..|.|.=|.+.+..+..+..
T Consensus       517 l~vareSG~I~rySl~nv~l~n~y~  541 (1189)
T KOG2041|consen  517 LMVARESGGIYRYSLNNVVLTNSYP  541 (1189)
T ss_pred             EEEEeccCceEEEEecceeeeeccc
Confidence            8889999999999999887776543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.1e-10  Score=122.60  Aligned_cols=254  Identities=15%  Similarity=0.217  Sum_probs=166.2

Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC--c
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN--N  879 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~--~  879 (1120)
                      .+++|+.+++.........  .... ++..|+.|..+.|--..+.+.+|+..+.+.... .-|...|+.+++|| ++  .
T Consensus       106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~  180 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP  180 (566)
T ss_pred             ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence            3456666664432221111  2222 588899998777666678999999987544322 22577899999999 52  3


Q ss_pred             EEEE-----EeCCCcEEEEEeecceeeEee--c-ccccceEEEEEccCCCE---EEEEeCCC---------CEEEEECCC
Q 001224          880 IIAI-----GMDDSSIQIYNVRVDEVKSKL--K-GHSKRITGLAFSHALNV---LVSSGADS---------QLCVWSSDG  939 (1120)
Q Consensus       880 ~las-----g~~dg~v~vwd~~~~~~~~~l--~-~h~~~V~~l~~s~d~~~---l~s~s~Dg---------~v~iWd~~~  939 (1120)
                      .+|+     ++.-+.|+||...-......+  + -....=..+.|.+-|.-   |++..-|.         ++.+.++++
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence            4443     345568999987632211111  0 01122234677776653   33444444         577777763


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224          940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
                      ..    .......     .++|.++.|+|+|+.+++  | .--.+.|||++ +..+..+.    .++-.++-|+|.|++|
T Consensus       261 ~s----~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  261 ES----VSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII  326 (566)
T ss_pred             ce----EEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence            11    1222221     258999999999998887  4 55789999986 44444443    6677889999999998


Q ss_pred             EEEEcC---CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC------CCcEEEEecCCCC
Q 001224         1017 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1087 (1120)
Q Consensus      1017 ~s~~~D---g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1087 (1120)
                      +.++-+   |.+-|||+.+.+++.++.    ..        ....+.|+| ||.+++|+.+      |+.++||++...-
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~--------~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFK----AA--------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccc----cC--------CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence            887754   889999999999997776    11        123689999 6999988876      6899999986543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=1.1e-11  Score=124.01  Aligned_cols=326  Identities=14%  Similarity=0.249  Sum_probs=204.1

Q ss_pred             CCCCEEEEEeCCCeEEEEE-CCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224          590 TTKNRFLAAGDDFSIKFWD-MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      |..+-+++.+.|.++++|- .+.++.-..+. +.....++++++.++.+.|++|-.+|++.-+.+..........+    
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r----  108 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK----  108 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh----
Confidence            3334599999999999995 44555444444 22345688999999999999999999998887654321111110    


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                       .|             
T Consensus       109 -----------------------------------------------------------------~~-------------  110 (404)
T KOG1409|consen  109 -----------------------------------------------------------------DY-------------  110 (404)
T ss_pred             -----------------------------------------------------------------hh-------------
Confidence                                                                             00             


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  828 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~  828 (1120)
                           ..|...+..+.|+-....+++.+.|..+. |-..                     +.|..+..-.    .....+
T Consensus       111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t  159 (404)
T KOG1409|consen  111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPAS  159 (404)
T ss_pred             -----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCC
Confidence                 23778888999998888899999886654 3221                     1111100000    001111


Q ss_pred             EEEEccCCCEEEEEe-CCcEEEEEc--CCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeEee
Q 001224          829 CFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL  904 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l  904 (1120)
                      ++.+.-.  +...|. .|.|.+-.+  .....+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+...+ ....+
T Consensus       160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence            1111111  334444 455444433  34567788999999999999999 88999999999999999997643 34678


Q ss_pred             cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeee-------------------------ccCCCCCCCC
Q 001224          905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTAQ  959 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-------------------------~~~~~~~~~~  959 (1120)
                      .+|...|..+...+--+.|++++.||.|.+|+++.........+.                         ....|-...+
T Consensus       237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg  316 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG  316 (404)
T ss_pred             ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            899999999999988999999999999999998864332211100                         0001100000


Q ss_pred             -CCcEEEEccCCcEEEEEeCCeEEEEEcCCce-----eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          960 -SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       960 -~i~~~~fspdg~~la~~~d~~v~i~d~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                       .+-..+-+....+...+..-.+++.|.-...     ......++.-...|+.+.+-.+-.+|++++.|..|+|||+..
T Consensus       317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence             1111222222223333444556655532111     100111111245689999988888999999999999999764

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.3e-11  Score=131.28  Aligned_cols=281  Identities=12%  Similarity=0.168  Sum_probs=202.4

Q ss_pred             CCCCcccccCCCccee-eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeec
Q 001224          709 GMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  787 (1120)
Q Consensus       709 ~~~~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~  787 (1120)
                      ..+..+..++||.+++ +|...-.|++||+....       +.+...-....|.-..++.|-..++....|..|.+... 
T Consensus        52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-  123 (703)
T KOG2321|consen   52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-  123 (703)
T ss_pred             cccceeEecCCCcEEEEecccCCceEEEEcccce-------eeeeecccccceeEEEeccchhhheEeecCceeeehhh-
Confidence            3355677889998865 66677899999998643       22222223445555666677666777777777665321 


Q ss_pred             ccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc-cCCCEEEEEeCCcEEEEEcCCCceeeeecCCCC
Q 001224          788 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPP  866 (1120)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~  866 (1120)
                                            -|.-....+     ...-..++++ |...++++|+...|+-++++.|..+..+....+
T Consensus       124 ----------------------~G~hy~~RI-----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~  176 (703)
T KOG2321|consen  124 ----------------------YGRHYRTRI-----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG  176 (703)
T ss_pred             ----------------------cCeeeeeec-----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc
Confidence                                  121111101     1122334443 344566666678899999999999999988889


Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc------ccc-----ceEEEEEccCCCEEEEEeCCCCEEEE
Q 001224          867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSK-----RITGLAFSHALNVLVSSGADSQLCVW  935 (1120)
Q Consensus       867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~-----~V~~l~~s~d~~~l~s~s~Dg~v~iW  935 (1120)
                      .++++..++ -..+|++|+.+|.|..||.++...+..+..      |.+     .|+++.|+.||-.+++|..+|.|.||
T Consensus       177 ~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iy  255 (703)
T KOG2321|consen  177 ELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIY  255 (703)
T ss_pred             cceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEE
Confidence            999999999 778999999999999999988766655532      333     49999999999999999999999999


Q ss_pred             ECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC
Q 001224          936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 1013 (1120)
Q Consensus       936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg 1013 (1120)
                      |+.+.+.   ...+....    ..+|..+.|.+.  +..+++.....++|||-.+|+....+.+   ...+..+|+-|++
T Consensus       256 DLRa~~p---l~~kdh~~----e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s  325 (703)
T KOG2321|consen  256 DLRASKP---LLVKDHGY----ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS  325 (703)
T ss_pred             EcccCCc---eeecccCC----ccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence            9998442   12222222    247889999775  5566667777899999999998877764   5569999999999


Q ss_pred             cEEEEEEcCCcEEEEEcCCcce
Q 001224         1014 QLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus      1014 ~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      .++++|.+++.+..|=+...-+
T Consensus       326 Gm~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  326 GMFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             ceEEEecCCCcceeEEccccCC
Confidence            9999999988888776655433

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.42  E-value=1.4e-12  Score=125.56  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=127.7

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhcccc--cccCcccchhh
Q 001224            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI   72 (1120)
Q Consensus         4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~   72 (1120)
                      -.+|+.|||++||-..||.++|+.+..|+|+...         ...+|.+|..|+.++|++.+.++.  .++.+  + .+
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~l  101 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-EL  101 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-hH
Confidence            4678999999999999999999999999999771         568899999999999999999993  33333  2 39


Q ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccCCC--chHHHHHHHHHHHhh
Q 001224           73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL  150 (1120)
Q Consensus        73 ~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~  150 (1120)
                      .|.+.+|+++|+++.+..++|+.|+|++|.|+...+++.++.|...|..--++..+. .....  ....|.++.+.+...
T Consensus       102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~-sp~~~l~~~s~R~kvA~~vN~a  180 (228)
T KOG2659|consen  102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQE-SPSAELLSQSLRQKVASEVNSA  180 (228)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCccc-CcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999878878777777655433332111 11111  245688888888777


Q ss_pred             cccCCCcccccCCCCCcchHHHHHHHHHHHHHH
Q 001224          151 IEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH  183 (1120)
Q Consensus       151 i~~~~~~~~~~~~~~~p~~rL~~ll~~~~~~q~  183 (1120)
                      |-...-   .     -...+|..||+.-+..|.
T Consensus       181 iL~~~~---~-----~~~~~l~~llk~~~~~~~  205 (228)
T KOG2659|consen  181 ILASQE---H-----ESEPKLPFLLKLISWAQE  205 (228)
T ss_pred             HHHHhc---c-----cccchHHHHHHHHHHHHH
Confidence            654222   0     013478888865555553

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=4.1e-11  Score=119.70  Aligned_cols=183  Identities=16%  Similarity=0.282  Sum_probs=123.6

Q ss_pred             ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-----eeEEeecccc------------CeEEEeeccCCCceEEE
Q 001224          471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFIF  533 (1120)
Q Consensus       471 ~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l~  533 (1120)
                      .+-|.+|.|..+|.  +|+||..+|.|.++.-....     ....++.|..            .|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45789999999999  79999999999999743222     2334444543            46777888888888888


Q ss_pred             EEecCCeEEEEecCCCCCce-----eeeCCCCceeEEEEc----------CCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          534 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYS----------ADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       534 s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s----------~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      ..+.|++|++|.+.......     ........++++...          ...++++...+.--+..++++.|...++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88999999999887543322     111112222222221          112256666666788899999999888776


Q ss_pred             eCCCeEEEEECCCCc-eeEEE--ecCC---CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCc
Q 001224          599 GDDFSIKFWDMDSVQ-LLTSI--DADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~-~~~~~--~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      . |=.|.+|+++--. .....  +.+.   -+.-|++..|+| ...+++-.+..|+|++.|++..
T Consensus       183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~  246 (433)
T KOG1354|consen  183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS  246 (433)
T ss_pred             c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence            4 6789999986432 22222  2111   123478899999 4567777888999999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.42  E-value=6.7e-13  Score=137.46  Aligned_cols=231  Identities=16%  Similarity=0.249  Sum_probs=184.5

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      -....+.|+.+|++ ++.|+..|.|..+|+.+++......                    -...|.++.|-.+.+++|++
T Consensus       130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA  188 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA  188 (545)
T ss_pred             cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence            34567899999997 7777888999999999988765422                    23478999999999999987


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      - ...+.|||-.+-+ +.   .+..| ..|..+.|.|..-  +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+
T Consensus       189 Q-K~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  189 Q-KKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             h-hceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence            5 4569999976533 44   34444 5799999999866  89999999999999999999999998888888888865


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  604 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  604 (1120)
                      |-  +..+-+|...|+|.+|.....+++..+..|.++|.++++.++|.                     ++++.+.|..+
T Consensus       261 P~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~---------------------YMaTtG~Dr~~  317 (545)
T KOG1272|consen  261 PY--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGR---------------------YMATTGLDRKV  317 (545)
T ss_pred             Cc--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCc---------------------EEeecccccce
Confidence            43  36888999999999999999999888888888888777777775                     89999999999


Q ss_pred             EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                      +|||++....+.++...   .....+++|..|. ||. +....+.+|.
T Consensus       318 kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkgl-LA~-~~G~~v~iw~  360 (545)
T KOG1272|consen  318 KIWDLRNFYQLHTYRTP---HPASNLSLSQKGL-LAL-SYGDHVQIWK  360 (545)
T ss_pred             eEeeeccccccceeecC---CCccccccccccc-eee-ecCCeeeeeh
Confidence            99999988877766542   2467788887663 333 3445788994

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.3e-11  Score=136.73  Aligned_cols=222  Identities=9%  Similarity=0.021  Sum_probs=139.0

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ..+..+...+.+.+|||||+.|+.+...  +..|.+|++.+|+...                    +....+.+...+||
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S  251 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS  251 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence            3344567789999999999975554432  3579999998876433                    12223335568999


Q ss_pred             CCCCeEEEE-ECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCc--EEEEECCCCceeE
Q 001224          436 PDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKT--IKVWDATNGAKQY  509 (1120)
Q Consensus       436 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~--i~vwd~~~~~~~~  509 (1120)
                      |||++|+.. +.+|  .|.+||+++++..+    +..+...+....|+|||+.  |+..+. ++.  |.++|+.++.. .
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~  324 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q  324 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence            999999875 4444  58899999876433    4445567889999999995  544443 444  44556666654 3


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      .+..+.......+|+  ++|++|+..+.+   ..|.+||+.++... .+... .....                     .
T Consensus       325 ~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p  379 (429)
T PRK03629        325 RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------P  379 (429)
T ss_pred             EeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------c
Confidence            443344444556664  556777665543   35778888765322 12111 11112                     3


Q ss_pred             EEcCCCCEEEEEeCCCe---EEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          587 QFDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                      .|+|||..++.++.++.   +.++++ +|.....+..+.  ..+...+|+|
T Consensus       380 ~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        380 SIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            45666667887776654   777787 455556665433  3577788887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=4.9e-10  Score=111.44  Aligned_cols=238  Identities=14%  Similarity=0.175  Sum_probs=159.1

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE-E
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A  444 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las-~  444 (1120)
                      ....++|+.|.. -+++|.. .-.+||+++.-+...++.+                   +.+.+.-+..---.++||- |
T Consensus         7 ~~lsvs~NQD~S-cFava~~-~Gfriyn~~P~ke~~~r~~-------------------~~~G~~~veMLfR~N~laLVG   65 (346)
T KOG2111|consen    7 KTLSVSFNQDHS-CFAVATD-TGFRIYNCDPFKESASRQF-------------------IDGGFKIVEMLFRSNYLALVG   65 (346)
T ss_pred             ceeEEEEccCCc-eEEEEec-CceEEEecCchhhhhhhcc-------------------ccCchhhhhHhhhhceEEEec
Confidence            344599999988 3666654 5578999876443222111                   1111111111112345554 3


Q ss_pred             ECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEEeeccc--
Q 001224          445 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--  515 (1120)
Q Consensus       445 ~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~--  515 (1120)
                      |.+      ..|.|||=...+++.   ++. ...+|.+|.+.++-    ++.. ..+.|.||... +.+.++.+....  
T Consensus        66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNP  136 (346)
T ss_pred             CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCC
Confidence            322      469999955544443   332 45789999998763    3333 35789999988 566777665433  


Q ss_pred             cCeEEEeeccCCCceEEEEEe-cCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          516 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ....+++  +..+..+|+.-| .-|.|++-|+.....  ...+..|...|.+++++-+|                     
T Consensus       137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G---------------------  193 (346)
T KOG2111|consen  137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG---------------------  193 (346)
T ss_pred             CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc---------------------
Confidence            3344444  444545666554 358999999876554  35556666655555555555                     


Q ss_pred             CEEEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          593 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       593 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ..++++|..|+ |||||..+|..+..+........|.+++|||+..+|+++++-|+++|+.+...
T Consensus       194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            58999999888 89999999999999986666678999999999999999999999999998764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.3e-11  Score=138.60  Aligned_cols=225  Identities=12%  Similarity=0.083  Sum_probs=138.8

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      .+...+..+...+.+.+|||||++|+.+...  +..|.+||+.+++...                    +..+.+...+.
T Consensus       194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~  253 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAP  253 (433)
T ss_pred             CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCc
Confidence            3444555678889999999999975544333  3469999998876543                    22334455688


Q ss_pred             EEcCCCCeEEE-EECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCCc--EEEEECCCCc
Q 001224          433 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGA  506 (1120)
Q Consensus       433 ~~spdg~~las-~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~~--i~vwd~~~~~  506 (1120)
                      +|||||++|+. .+.+|  .|.+||+.+++..    .+..+.......+|+|||++  ++..+ .++.  |.++|+.+++
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence            99999998874 45555  5999999988643    35556666678999999995  44444 4444  6777777766


Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      ... +..+.......+|+  ++|++|+..+.++   .|.+||+.++... .+. +........                 
T Consensus       328 ~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~-----------------  385 (433)
T PRK04922        328 AER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS-----------------  385 (433)
T ss_pred             eEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce-----------------
Confidence            433 32233334456765  4556777655432   6889998765432 221 111222334                 


Q ss_pred             eEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          584 GVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                          |+|+|+.++..+.   .+.|.++++.. .....+..+.  ..+...+|+|
T Consensus       386 ----~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        386 ----FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             ----ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence                4455555655443   34688888854 4444444322  2456677776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=4.1e-10  Score=125.06  Aligned_cols=280  Identities=15%  Similarity=0.178  Sum_probs=174.8

Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc----CceEEEeeecccccCCCCccccccCcee
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                      +.|.+|+++.....  +..+..  .........++++|++++|.+...    ++.|..|++...                
T Consensus        13 ~gI~~~~~d~~~g~--l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~----------------   72 (345)
T PF10282_consen   13 GGIYVFRFDEETGT--LTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD----------------   72 (345)
T ss_dssp             TEEEEEEEETTTTE--EEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred             CcEEEEEEcCCCCC--ceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence            67888888432211  111110  113345567889999999988876    468888876432                


Q ss_pred             ecCCCCCccccc-CCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cceeee---e----------cCCCCCe
Q 001224          806 WQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA  868 (1120)
Q Consensus       806 w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i  868 (1120)
                          +|.+.... ...  .......++++|++++++++.  +|.|.++++.. +.....   +          .......
T Consensus        73 ----~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~  146 (345)
T PF10282_consen   73 ----TGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP  146 (345)
T ss_dssp             ----TTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred             ----cceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence                12211100 000  234556799999999999997  79999999986 333222   1          1123457


Q ss_pred             EEEEEecCCCcEEEEEe-CCCcEEEEEeecce--ee--Eeec-ccccceEEEEEccCCCEEEEE-eCCCCEEEEECC--C
Q 001224          869 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSD--G  939 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~--~  939 (1120)
                      .++.|+| +++++++.. ....|++|++....  +.  ..+. .....-..++|+||++++... -.+++|.++++.  .
T Consensus       147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~  225 (345)
T PF10282_consen  147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD  225 (345)
T ss_dssp             EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence            8999999 888777654 33489999997654  22  2222 233456789999999988655 457789999998  4


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cce--eeeccccCCCCCCeeEEEECCCC
Q 001224          940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVPRESSAPITHATFSCDS 1013 (1120)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~--~~~~~~~~~h~~~v~~l~~s~dg 1013 (1120)
                      +.......+...............++++|||++|.++  ..+.|.+|++.  ++.  .+..+..  .......++++|||
T Consensus       226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG  303 (345)
T ss_dssp             TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred             CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence            4333333333332222111256789999999999996  56789999993  233  3333332  24458999999999


Q ss_pred             cEEEEEEc-CCcEEEEEc--CCcceeee
Q 001224         1014 QLVYACFL-DATVCVFSA--ANLKLRCR 1038 (1120)
Q Consensus      1014 ~~l~s~~~-Dg~v~iwd~--~~~~~~~~ 1038 (1120)
                      ++|+++.. ++.|.+|++  .+|.+...
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            99998885 468999976  57776543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.6e-10  Score=132.02  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=134.6

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  463 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~  463 (1120)
                      ..|.+||.+.+....                    +..+...+.+.+|||||+.||..+.   +..|.+|++.+++.. .
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~  237 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q  237 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence            368889887654322                    3446678999999999999997643   457999999988633 2


Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCe
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK  540 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~  540 (1120)
                         +....+.+..++|+|||+. ++++.+.++  .|++||+.+++... +..+...+....|++  +|+.|+..+. ++.
T Consensus       238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~  310 (429)
T PRK03629        238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP--DSQNLAYTSDQAGR  310 (429)
T ss_pred             ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC--CCCEEEEEeCCCCC
Confidence               2223334557899999996 333334444  58999998887654 333445566677754  5567766654 455


Q ss_pred             EEEE--ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCcee
Q 001224          541 IKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  615 (1120)
Q Consensus       541 i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  615 (1120)
                      ..+|  |+.++. ...+........                     ...|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       311 ~~Iy~~d~~~g~-~~~lt~~~~~~~---------------------~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        311 PQVYKVNINGGA-PQRITWEGSQNQ---------------------DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             ceEEEEECCCCC-eEEeecCCCCcc---------------------CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            5555  444322 122222222222                     34455555666665432   45889999888643


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEcc
Q 001224          616 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS  654 (1120)
Q Consensus       616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~  654 (1120)
                       .+....   ......|+|||++|+.++.++.   +.++++.
T Consensus       369 -~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        369 -VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             -EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence             333221   2346889999999999988765   5666663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=3.8e-11  Score=137.47  Aligned_cols=226  Identities=15%  Similarity=0.131  Sum_probs=135.4

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      .+...+..+...+.+.+|||||+.|+.+...+  ..|.+||+.+++...                    +....+.+.+.
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~  245 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAP  245 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence            33445556888999999999999755444333  359999999886543                    22233456789


Q ss_pred             EEcCCCCeEEE-EECCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC--CCCce
Q 001224          433 IWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAK  507 (1120)
Q Consensus       433 ~~spdg~~las-~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~--~~~~~  507 (1120)
                      +|||||+.|+. .+.+|...||.+  .++. .+   .+..+.+.+....|+|||+. ++++...++...||.+  .++..
T Consensus       246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce
Confidence            99999999875 567787666654  4443 22   35556666778899999995 2334434566666654  44443


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                       ..+..+........|+  ++|++|+..+.++   .|.+||+.+++... +.. ........                  
T Consensus       321 -~~lt~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~------------------  377 (427)
T PRK02889        321 -QRVTFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPS------------------  377 (427)
T ss_pred             -EEEecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCce------------------
Confidence             2222222233345664  5667887766544   68999987654322 211 11123334                  


Q ss_pred             EEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          585 VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                         |+|+++.|+.++.++   .+.+.+. ++.....+..+.+  .+...+|+|
T Consensus       378 ---~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp  424 (427)
T PRK02889        378 ---FAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP  424 (427)
T ss_pred             ---ECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence               455555666655332   3555566 4555555543322  466678876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.7e-10  Score=133.00  Aligned_cols=216  Identities=12%  Similarity=0.065  Sum_probs=140.3

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  463 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~  463 (1120)
                      ..|.+||.......                    .+..|...+.+.+|||||++|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            47888888654432                    25567889999999999999998764   468999999988643  


Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCCc--EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CC-
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG-  539 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg-  539 (1120)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.++.. ..+..+........|+  ++|+.|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence              25556677889999999996 4456666655  77789887765 4455565556666775  45567766653 33 


Q ss_pred             -eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCcee
Q 001224          540 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  615 (1120)
Q Consensus       540 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  615 (1120)
                       .|.+||+..... ..+......+..                     ..|+|+|+.++..+.+   ..|.+||+.++.. 
T Consensus       314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~---------------------~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-  370 (435)
T PRK05137        314 PQLYVMNADGSNP-RRISFGGGRYST---------------------PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-  370 (435)
T ss_pred             CeEEEEECCCCCe-EEeecCCCcccC---------------------eEECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence             577777654322 222212222223                     4455555566665432   3688889865543 


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEccCc
Q 001224          616 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG  656 (1120)
Q Consensus       616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~  656 (1120)
                      ..+... .  .+..+.|+|||+.|+..+.+      ..+.++++..+
T Consensus       371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            333322 1  36778999999998876553      24667776544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1.4e-09  Score=111.01  Aligned_cols=282  Identities=9%  Similarity=0.092  Sum_probs=185.0

Q ss_pred             CCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC---ceEEEeeecccccCCCCccccccCcee
Q 001224          729 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       729 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                      +.-|.+|++.+.........+    .......+-++++|+.+.|.++..+   |.|.-|.+                   
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            467999999843221111111    2356788899999999988887664   56666654                   


Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCC-Cceeee--ecCCCCC----------eEE
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF  870 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~  870 (1120)
                       |..+|++....-.. ....+.+.++++++|++++++.  .|.|.++-+.. |.....  ...|.+.          +.+
T Consensus        72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence             44445432211100 1233448899999999999998  68999999965 433211  1223333          788


Q ss_pred             EEEecCCCcEEEEEeC-CCcEEEEEeecceeeEeec---ccccceEEEEEccCCCEEEEEe-CCCCEEEEECCC--cccc
Q 001224          871 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ  943 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~--~~~~  943 (1120)
                      ..|.| ++++|++.+- --.|.+|++..|++...-.   .....-..|.|+|++++....+ -+++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            99999 8888887653 2379999999776442211   2334457899999999876555 489999999988  3333


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEcCCcee-eecc-ccCCCCCCeeEEEECCCCcEEEEE
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTKLEC-VKQW-VPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~~v~i~d~~~~~~-~~~~-~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
                      ..+.+...+...........+..++||++|.++.  ...|.+|.+....- +... ....+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            3333434433333345678899999999999973  44788888764321 2111 112334557889999999999999


Q ss_pred             EcCC-cEEEEEc--CCccee
Q 001224         1020 FLDA-TVCVFSA--ANLKLR 1036 (1120)
Q Consensus      1020 ~~Dg-~v~iwd~--~~~~~~ 1036 (1120)
                      .+++ .|.||..  .+|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            8774 5888866  455554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=6.5e-10  Score=123.46  Aligned_cols=252  Identities=14%  Similarity=0.212  Sum_probs=162.7

Q ss_pred             CCCccEEEEccCCCEEEEEeC-----CcEEEEEcCCC--c--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001224          824 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  893 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sd-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw  893 (1120)
                      ......++++|++++|.+...     +.|..|++...  +  .+............++++| ++++|+++. .+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence            445667999999999998862     57888887653  3  2333333445677899999 777777765 68999999


Q ss_pred             Eeec-ceeeEe---ec----------ccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCccc--ccceeeeccCCCCC
Q 001224          894 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEK--QKNRFLQIPTGRTP  956 (1120)
Q Consensus       894 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~  956 (1120)
                      ++.. +.+...   +.          .-.....++.|+|||++|++... ...|.+|+++....  .....+....+   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---  191 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---  191 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence            9986 433322   21          11244678999999998887643 34699999987552  22223333444   


Q ss_pred             CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Ccee--eecccc--CCC--CCCeeEEEECCCCcEEEEEE-cCCcE
Q 001224          957 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVP--RES--SAPITHATFSCDSQLVYACF-LDATV 1025 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~--~~~~~~--~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v 1025 (1120)
                        ...+.++|+|+|+++.+.  .++.|.+|++.  ++..  +..+..  .+.  ......|+++|||++|+++. .+..|
T Consensus       192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence              355999999999999885  56789999988  4432  222211  111  23688999999999988776 45789


Q ss_pred             EEEEcC--CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCCCCCCC
Q 001224         1026 CVFSAA--NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1026 ~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~ 1090 (1120)
                      .+|+++  ++++.. +.   ..+.    ....|..++++| |+++|+++. .++.|.+|++....+.|
T Consensus       270 ~vf~~d~~~g~l~~-~~---~~~~----~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  270 SVFDLDPATGTLTL-VQ---TVPT----GGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEEECTTTTTEEE-EE---EEEE----SSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEEEecCCCceEE-EE---EEeC----CCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            999993  344432 22   1221    114567899999 578777665 66799999986544433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.38  E-value=1.2e-07  Score=116.49  Aligned_cols=536  Identities=13%  Similarity=0.152  Sum_probs=286.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEE----ecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      ..+.|.++.|-++... ++.+..+|.|.+.    +..+.+.-                    +.+.-...|.|++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E--------------------~VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIE--------------------IVGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeE--------------------EEEEEcCcEEEEEECCCc
Confidence            4588999999999985 7888889999999    55544332                    233456689999999999


Q ss_pred             CeEEEEECCCeEEEEEcc----C---------C--cee--------eee----------------------eeecccccC
Q 001224          439 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG  473 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~----~---------~--~~~--------~~~----------------------~~l~~h~~~  473 (1120)
                      ..||..+.++++.+-+-.    .         |  +.+        .++                      ..+. +.+.
T Consensus       133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~  211 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG  211 (928)
T ss_pred             CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence            999999999988875421    0         0  000        000                      0111 3335


Q ss_pred             eEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec---CCeEEEE
Q 001224          474 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW  544 (1120)
Q Consensus       474 V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw  544 (1120)
                      -..|+|-.||+  |+|+.+.      -+.+|||+ +.|....+-..-.+--.+++|-  |.|++|++...   ...|.+|
T Consensus       212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~Wr--PsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWR--PSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCC--CCCCEEEEEEEcCCCcEEEEE
Confidence            56789999999  5666553      25799999 6677665554333334456764  55578887764   3456666


Q ss_pred             ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCC
Q 001224          545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG  622 (1120)
Q Consensus       545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~  622 (1120)
                      .-+..+ ...+.        +.+.+++         ..+..+.|++++..|+....|. |.+|-..+....  +.+....
T Consensus       287 ErNGLr-hgeF~--------l~~~~~~---------~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  287 ERNGLR-HGEFT--------LRFDPEE---------EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ecCCcE-eeeEe--------cCCCCCC---------ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence            433211 11111        1111111         2445566666666777766554 999998876532  3333222


Q ss_pred             CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          623 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       623 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                      . ..+..+.|+| +...|.+.+.+|.+..++..-....     +.             .                     
T Consensus       348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~-----s~-------------~---------------------  387 (928)
T PF04762_consen  348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR-----SP-------------G---------------------  387 (928)
T ss_pred             C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe-----cC-------------C---------------------
Confidence            1 2355599999 5667888888788876654321000     00             0                     


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc--eeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPENLRATKISRLIFTNSGNAILALASNA  779 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  779 (1120)
                                    ..++..-.+..-...++++-.+.....+...  ..+.     -...|..++|++++..+++...||
T Consensus       388 --------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  388 --------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             --------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCC
Confidence                          0011111111112234555444443333333  3333     346899999999998899999999


Q ss_pred             eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-C---CcEEEEEcCCC
Q 001224          780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTF  855 (1120)
Q Consensus       780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-d---g~i~vwd~~~~  855 (1120)
                      .+.+|.+................+     .......  .........+..++|..+...++... +   ..+.+++....
T Consensus       449 ~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  449 SLSIYEWDLKNMWSVKPPKLLSSI-----SLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             CEEEEEecCCCcccccCcchhhhc-----ccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence            999998654322110000000000     0000000  00001345677888888887777665 3   46888887433


Q ss_pred             c---eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eEeecccccceEEEEEccCCC---EEEEEeC
Q 001224          856 K---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGA  928 (1120)
Q Consensus       856 ~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~  928 (1120)
                      .   .......-.+.+..+...+ +...++.-..+|.|...+...... +..|...-.. ..+....+..   .++.-+.
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~  599 (928)
T PF04762_consen  522 ENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSS  599 (928)
T ss_pred             CCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECC
Confidence            2   2222332344455555555 444466677789888666544321 1222221111 2222222222   3444444


Q ss_pred             CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC-ceeeeccccCCC----CCC
Q 001224          929 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES----SAP 1003 (1120)
Q Consensus       929 Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~-~~~~~~~~~~~h----~~~ 1003 (1120)
                      .|.+.+   +.      ..+.         ..+++++++ +..+|.+.....++..++.. -....... ..+    ...
T Consensus       600 ~~~Ly~---n~------~~la---------~~~tSF~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~  659 (928)
T PF04762_consen  600 NGRLYA---NS------RLLA---------SNCTSFAVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDER  659 (928)
T ss_pred             CCEEEE---CC------EEEe---------cCCceEEEE-cCEEEEEecCceEEEEECcCchhhccccc-Cccccccccc
Confidence            444432   11      1111         245666663 33344446677788888871 11111110 000    111


Q ss_pred             eeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224         1004 ITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus      1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      +..   -.-|..|+++-....=-|..+.-|.+
T Consensus       660 ~R~---VERGsriVt~vp~~~~vVLQmPRGNL  688 (928)
T PF04762_consen  660 CRR---VERGSRIVTAVPSDTSVVLQMPRGNL  688 (928)
T ss_pred             ccc---CccCCEEEEEeCCCceEEEEcCCCch
Confidence            222   23566777666444555567766655

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.37  E-value=5e-11  Score=121.58  Aligned_cols=276  Identities=10%  Similarity=0.113  Sum_probs=175.7

Q ss_pred             cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE------eeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      ....|..++|..|++.-+++.++.|..+..+++....+...      .....++|..+..   .| ..|++|-.+|.+.+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~---~d-g~Litc~~sG~l~~  129 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL---AD-GTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh---cC-CEEEEEecCCcEEE
Confidence            34578889998887765677776888888888877666544      3445667776653   33 37888899999999


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC-EEEEEeCC--CeEEEEECCCCceeEEEec
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDD--FSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~  620 (1120)
                      |.......      |.....-++..            ..+..+.-++... .+++|+..  ..+.|||+...+.+..-+.
T Consensus       130 ~~~k~~d~------hss~l~~la~g------------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  130 RHDKSGDL------HSSKLIKLATG------------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             EeccCCcc------ccccceeeecC------------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC
Confidence            98874321      01111111111            1222333333333 44558888  8899999988855444321


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224          621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  700 (1120)
Q Consensus       621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1120)
                      .            |+..      -+=.|.+|+..-.                                            
T Consensus       192 v------------pnD~------L~LrVPvW~tdi~--------------------------------------------  209 (412)
T KOG3881|consen  192 V------------PNDR------LGLRVPVWITDIR--------------------------------------------  209 (412)
T ss_pred             C------------CCcc------ccceeeeeeccce--------------------------------------------
Confidence            1            1111      1224566653211                                            


Q ss_pred             cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCC--CceEEEeccC
Q 001224          701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASN  778 (1120)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--g~~l~~~~~d  778 (1120)
                                                                                      |-+.  ...+++++.-
T Consensus       210 ----------------------------------------------------------------Fl~g~~~~~fat~T~~  225 (412)
T KOG3881|consen  210 ----------------------------------------------------------------FLEGSPNYKFATITRY  225 (412)
T ss_pred             ----------------------------------------------------------------ecCCCCCceEEEEecc
Confidence                                                                            0000  1225555555


Q ss_pred             ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224          779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  857 (1120)
Q Consensus       779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~  857 (1120)
                      +.+++||.+.                      ++.....+..  ...+++++...|+++++++|. -|.+..||+.++..
T Consensus       226 hqvR~YDt~~----------------------qRRPV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  226 HQVRLYDTRH----------------------QRRPVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeEEEecCcc----------------------cCcceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            5555554421                      1100000111  467789999999999999998 79999999999988


Q ss_pred             eee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC
Q 001224          858 MAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA  919 (1120)
Q Consensus       858 ~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d  919 (1120)
                      ... +.+..+.|+++..+| ...+||+++-|..|||+|+.+.+++....- .+.+++|.+.++
T Consensus       282 ~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             eccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence            876 888999999999999 889999999999999999999776655432 234566666544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.4e-10  Score=133.28  Aligned_cols=215  Identities=13%  Similarity=0.132  Sum_probs=137.2

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeee
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ  463 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~  463 (1120)
                      ..|.+||...+....                    +..|...+.+.+|||||++|+..+.+   ..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            468899986543321                    44567789999999999999988743   469999999886432 


Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCe
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK  540 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~  540 (1120)
                         +..+.+...+++|+|||+. ++++.+.++  .|++||+.+++. ..+..+.......+|+  ++|+.|+..+ .+|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence               3344455668899999996 344555555  599999988875 4455555555566775  4556776665 3455


Q ss_pred             --EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCcee
Q 001224          541 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLL  615 (1120)
Q Consensus       541 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~  615 (1120)
                        |.++++.+++. ..+........                     ..+|+|+|++++..+.++   .|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~-~~lt~~g~~~~---------------------~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSA-ERLTFQGNYNA---------------------RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCcc---------------------CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence              55555544322 11111111122                     345556666676654332   6999999887754


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccC
Q 001224          616 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD  655 (1120)
Q Consensus       616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~  655 (1120)
                       .+. +..  ......|+|||++++..+.+   +.+.+++...
T Consensus       374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             333 221  24567999999988877653   3566676643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2e-09  Score=115.40  Aligned_cols=195  Identities=8%  Similarity=0.178  Sum_probs=130.4

Q ss_pred             CCCCccEEEEccCCC--EEEEE---eC---CcEEEEEcCCCceeeeec--C-CCCCeEEEEEecCCCcEEEEEeC-----
Q 001224          823 PEEAVPCFALSKNDS--YVMSA---SG---GKISLFNMMTFKTMATFM--P-PPPAATFLAFHPQDNNIIAIGMD-----  886 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~--~l~~~---sd---g~i~vwd~~~~~~~~~~~--~-~~~~i~~l~~sp~d~~~lasg~~-----  886 (1120)
                      |...|+.+.+||.+.  .+|+-   .+   +.++||..........+.  . ....-..+.|.+-+..+|+.++.     
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            667788888988743  44442   12   569999876222111110  0 11223456677633334443332     


Q ss_pred             ------CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEE--EeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224          887 ------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       887 ------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~  958 (1120)
                            ..++++.+++..++.-.+. -.++|.++.|+++++.++.  |-.=..+.|+|++.     ........|     
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~eg-----  312 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPEG-----  312 (566)
T ss_pred             CccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-----CEeEeCCCC-----
Confidence                  2367888877434443343 4789999999999976654  44567799999887     234444444     


Q ss_pred             CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc------CCcEEEE
Q 001224          959 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVF 1028 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg~v~iw 1028 (1120)
                       +-.++-|+|.|++++.+    -.|.+.|||+.+.+++..+.    ...-+-+.|+|||++++|++.      |..++||
T Consensus       313 -pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw  387 (566)
T KOG2315|consen  313 -PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIW  387 (566)
T ss_pred             -CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence             34789999999999884    23789999999988888776    345667899999999998874      7889999


Q ss_pred             EcCCc
Q 001224         1029 SAANL 1033 (1120)
Q Consensus      1029 d~~~~ 1033 (1120)
                      ++...
T Consensus       388 hytG~  392 (566)
T KOG2315|consen  388 HYTGS  392 (566)
T ss_pred             EecCc
Confidence            97643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.36  E-value=5.7e-11  Score=118.68  Aligned_cols=155  Identities=11%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             EEEEEecCCCcEEEEEeC----------CCcEEEEEeec-ceeeEeecc-cccceEEEEEccCCCEEEE--EeCCCCEEE
Q 001224          869 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVS--SGADSQLCV  934 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s--~s~Dg~v~i  934 (1120)
                      ..+.|+| .|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|.  |..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4577888 6655554332          13455665533 223344432 3457999999999998754  446789999


Q ss_pred             EECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcCCceeeeccccCCCCCCeeEEEEC
Q 001224          935 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1010 (1120)
Q Consensus       935 Wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s 1010 (1120)
                      ||++.     .... ....     ..+..+.|||+|++|++++    .|.+.+||..+.+.+....    ...++.++||
T Consensus        88 yd~~~-----~~i~-~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKG-----KKIF-SFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCcc-----cEeE-eecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            99963     1122 2222     2567899999999999953    4679999999998887754    3457999999


Q ss_pred             CCCcEEEEEEc------CCcEEEEEcCCcceeeeeC
Q 001224         1011 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1011 ~dg~~l~s~~~------Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      |||++|+++..      |..++||+.. |+++.+..
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999998874      7889999985 66665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.36  E-value=4.4e-07  Score=111.56  Aligned_cols=521  Identities=13%  Similarity=0.141  Sum_probs=274.0

Q ss_pred             CCceEEEEecCCCeEEEEEe-CCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          365 SSPMSMDFHPVQQTLLLVGT-NVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      ..+...+|.+....++++-+ ...  .|.+.........  ..+--|+...         .....+.|.++.|-++...|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~~---------~~~~~~~ivs~~yl~d~~~l   90 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAPL---------PDDPNDKIVSFQYLADSESL   90 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEeccccC---------CcCCCCcEEEEEeccCCCcE
Confidence            46777888887765444333 322  3444443332211  1111111110         12345789999999999999


Q ss_pred             EEEECCCeEEEE----EccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE--------
Q 001224          442 GVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--------  509 (1120)
Q Consensus       442 as~~~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~--------  509 (1120)
                      +.+..+|.|.+.    +..+.. +.   ....-...|.+++||||+.  +++....++++.+-+ ++-..+.        
T Consensus        91 ~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   91 CIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSDD  163 (928)
T ss_pred             EEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCccc
Confidence            999999999999    554433 22   1223457899999999999  455555567766543 2221111        


Q ss_pred             ----------------EeeccccC------------------e----EEEeeccCCCceEEEEEec---C---CeEEEEe
Q 001224          510 ----------------IFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAWL  545 (1120)
Q Consensus       510 ----------------~~~~h~~~------------------v----~~~~~~~~~~~~~l~s~~~---d---g~i~iwd  545 (1120)
                                      .|.|..+.                  +    ..+.++..+||.+++..+.   .   +.+|+|+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                            11111000                  0    1122334678888887764   2   4688886


Q ss_pred             cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeEEEecC-
Q 001224          546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD-  621 (1120)
Q Consensus       546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-  621 (1120)
                      -+  +.+...   ..++.                 +--..++|-|.|+.+++...   ...|.+|.- +|-.-..+... 
T Consensus       244 Re--G~L~st---SE~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~  300 (928)
T PF04762_consen  244 RE--GELQST---SEPVD-----------------GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF  300 (928)
T ss_pred             CC--ceEEec---cccCC-----------------CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence            54  111111   11111                 11224566666777777543   455677764 44433333322 


Q ss_pred             -CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224          622 -GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  700 (1120)
Q Consensus       622 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1120)
                       .....|..+.|++|+..|++...|. |.+|-..+..-.++.-                                     
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe-------------------------------------  342 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE-------------------------------------  342 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-------------------------------------
Confidence             2334689999999999999988655 9999876552111110                                     


Q ss_pred             cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC-ceEEEeccCc
Q 001224          701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNA  779 (1120)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg  779 (1120)
                                                                      +.++   ....+..+.|+|.. ..+...+.+|
T Consensus       343 ------------------------------------------------i~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  343 ------------------------------------------------IRFS---SSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             ------------------------------------------------EEcc---CCCCCCceEECCCCCCEEEEEecCC
Confidence                                                            0000   11122236666643 3466666667


Q ss_pred             eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEeCCcEEEEEcCCCcee
Q 001224          780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISLFNMMTFKTM  858 (1120)
Q Consensus       780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~sdg~i~vwd~~~~~~~  858 (1120)
                      .+..+++                  .|+...+..                  .+| |...+++....++.+-.++.....
T Consensus       372 ~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  372 QYEIYDF------------------AWDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             cEEEEEE------------------EEEEEecCC------------------CCccCceEEEEEeCCeEEEecccccCCC
Confidence            7766655                  222211110                  011 222344444456777666543221


Q ss_pred             -----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee--------Eee----------cccccceEEEE
Q 001224          859 -----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--------SKL----------KGHSKRITGLA  915 (1120)
Q Consensus       859 -----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--------~~l----------~~h~~~V~~l~  915 (1120)
                           ..+. ....|.+++|++ ++..+|+-..||.|.+|........        ..+          ..-...+..++
T Consensus       416 PPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (928)
T PF04762_consen  416 PPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA  493 (928)
T ss_pred             chHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence                 2222 346799999999 6666888899999999986542211        111          11234577888


Q ss_pred             EccCCCEEEEEeCC---CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCcee
Q 001224          916 FSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  991 (1120)
Q Consensus       916 ~s~d~~~l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~  991 (1120)
                      |..+...++....+   ..+.++++...+.. ..........    ..+..+...++...++. ..+|.+..++......
T Consensus       494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~  568 (928)
T PF04762_consen  494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS  568 (928)
T ss_pred             EeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence            98887776666554   56888887443211 1111111111    23344444555442333 6788888666554322


Q ss_pred             ee-ccccCCCCCCeeEEEECCCCc---EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224          992 VK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus       992 ~~-~~~~~~h~~~v~~l~~s~dg~---~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
                      .. .+.  . ...-..++...+..   .++.=+..|.+++    ++..++.              .+.  +.+.+   +.
T Consensus       569 ~~~~fp--~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--------------~~t--SF~v~---~~  622 (928)
T PF04762_consen  569 QIVKFP--Q-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--------------NCT--SFAVT---DS  622 (928)
T ss_pred             ccccCC--C-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--------------CCc--eEEEE---cC
Confidence            21 121  1 11222222222222   3333333444443    3333321              133  55554   34


Q ss_pred             EEEEEeCCCcEEEEecC
Q 001224         1068 EFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1068 ~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      +|+.......+++.++.
T Consensus       623 ~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  623 FLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             EEEEEecCceEEEEECc
Confidence            66666667889999988

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.5e-10  Score=133.41  Aligned_cols=225  Identities=11%  Similarity=0.042  Sum_probs=141.2

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeC--CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      ..+...+..|...+.+.+|||||++|+.+...  +..|.+||+.+++...                    +..+.+.+.+
T Consensus       191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~  250 (435)
T PRK05137        191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFA  250 (435)
T ss_pred             CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccC
Confidence            34445555688899999999999975554432  4689999999886532                    3445667889


Q ss_pred             EEEcCCCCeEEE-EECCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCC--cEEEEECCCC
Q 001224          432 VIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNG  505 (1120)
Q Consensus       432 l~~spdg~~las-~~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~--~i~vwd~~~~  505 (1120)
                      .+|||||+.|+. .+.++.  |.+||+.++...    .+..+.+......|+|||+.  ++..+ .++  .|.+||+.++
T Consensus       251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             cEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCC
Confidence            999999998864 455554  777788887643    35566667788999999995  44433 333  6888897766


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                      .. ..+..+...+....|+  ++|+.|+..+.+   ..|.+||+..... ..+. ....+....|+||            
T Consensus       325 ~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spD------------  387 (435)
T PRK05137        325 NP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPN------------  387 (435)
T ss_pred             Ce-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCC------------
Confidence            54 3443344555566675  455677766543   3577777654322 2121 1122334444444            


Q ss_pred             eeEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          583 LGVVQFDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                               |+.++..+. .     ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       388 ---------G~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        388 ---------GRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             ---------CCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence                     455555432 2     3688888866544 3443222   356677776

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=3.4e-09  Score=113.64  Aligned_cols=205  Identities=12%  Similarity=0.089  Sum_probs=127.0

Q ss_pred             cEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee--
Q 001224          828 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--  901 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~--  901 (1120)
                      ..++++|||+++.+..   +..|.+.|+.+++.+..+.... ...-...++ +..+ + -+.||......+.+ |+..  
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEe
Confidence            3567788888887765   5778899998888888776422 222222222 2221 1 22344443333222 2111  


Q ss_pred             --EeecccccceE-EEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC----CCCCCCcEEEEccCCcEE
Q 001224          902 --SKLKGHSKRIT-GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       902 --~~l~~h~~~V~-~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~fspdg~~l  973 (1120)
                        ..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+..............    -..+...-++++++++.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence              11111001110 004455 8877776665 99999997654433333332221110    012344559999999988


Q ss_pred             EEEe---C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          974 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       974 a~~~---d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+..   .        +.|.++|..+++.+..+..   ...+..++|||||+ +|++.+ .++.|.|+|..+++.+..+.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8732   1        5799999999999998875   45899999999999 777776 57889999999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=2.2e-08  Score=104.61  Aligned_cols=171  Identities=14%  Similarity=0.151  Sum_probs=133.9

Q ss_pred             CCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeEeecccccceEE
Q 001224          835 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       835 d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      +|.+++..+.|+..+.+...+-.++.  ++.+.|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence            78899999999988888766554432  4667788888888 677889999999 99999998876 4666777788999


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e----CCeEEEEEcCC
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H----ETQLAIFETTK  988 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~----d~~v~i~d~~~  988 (1120)
                      +..++||++++.+.....+.+.|++++...   .+..  .   ..+-|+.+.|+|+++++|.+ -    ...|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idk--S---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDK--S---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecc--c---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            999999999999998899999999997642   1111  1   12478999999999999986 2    35799999999


Q ss_pred             ceeeeccccCCCCCCeeEEEECCCCcEEEEEE
Q 001224          989 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus       989 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
                      ++....-...+|   =.+-+|.|||++|.--+
T Consensus       479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence            988776554333   34558999999877544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.33  E-value=2e-09  Score=113.74  Aligned_cols=310  Identities=13%  Similarity=0.118  Sum_probs=190.6

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc-EEEEccCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND  836 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~l~~s~d~  836 (1120)
                      ..|..+.|+|.+++|.+-...+.+   +-+. +..+..   ....+.+||..+|.++...... ....-.. -+.|+.+.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~---~pe~-e~sp~~---~~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D  143 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPII---EPEI-EISPFT---SKNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD  143 (561)
T ss_pred             CCceecccCcccceeeeeccCCcc---Chhh-ccCCcc---ccCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence            456667777777776665554332   0000 000000   0013578888888765532211 1121133 57888899


Q ss_pred             CEEEEEeCCcEEEEEcCCCcee-eeecCC-CCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEEeecceeeEeecccc
Q 001224          837 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS  908 (1120)
Q Consensus       837 ~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~~i~~l~~sp~-d~~~las-----g~~dg~v~vwd~~~~~~~~~l~~h~  908 (1120)
                      +++|--....++|+++ +.... ..+..- ...|+...|+|. ++..||.     +..++++++|.+..++.+.+-.-..
T Consensus       144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk  222 (561)
T COG5354         144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK  222 (561)
T ss_pred             hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence            8888666678999997 33221 111111 356888999994 3344553     4567899999998766554433222


Q ss_pred             cceEEEEEccCCCEEEEEe-----------CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--
Q 001224          909 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--  975 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s-----------~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--  975 (1120)
                      ..=..+.|.+.|++|..--           ....+.++++.....    ....     ...++|...+|.|.++.+++  
T Consensus       223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----~V~~-----~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI----PVEK-----DLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc----ceec-----cccccceeeeecccCCceeEEe
Confidence            2334678888888765321           124577777763211    1110     11258999999999998887  


Q ss_pred             E-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceee-eeCCCcccCCCCC
Q 001224          976 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1050 (1120)
Q Consensus       976 ~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~-~~~~~~~~~~g~~ 1050 (1120)
                      | .+-.+.++|++.. ....+.    ...=..+.|||.+++++.++-|   |.|-|||........ .+.       +  
T Consensus       294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~--  359 (561)
T COG5354         294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------G--  359 (561)
T ss_pred             cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------c--
Confidence            3 5778999999866 333322    3455667899999999988766   789999988766654 444       1  


Q ss_pred             CCCccceEEEecCCCCCEEEEEe------CCCcEEEEecCCCC------CCCCCCCCCCCCCCCC
Q 001224         1051 SSNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE------GKWGVPPPVDNGSTSS 1103 (1120)
Q Consensus      1051 ~~~v~~~~i~~~p~d~~~l~s~~------~Dg~v~vW~~~~~~------~~~~~~~p~~~~~~~~ 1103 (1120)
                       .+..  .+.|+| |++++.+..      .|..+.||++...+      -.|..+-++-..++..
T Consensus       360 -~n~s--~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~  420 (561)
T COG5354         360 -LNTS--YCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSC  420 (561)
T ss_pred             -CCce--EeeccC-CceEEEecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccC
Confidence             1122  678999 688776653      37899999998776      4566654544444433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2e-12  Score=143.38  Aligned_cols=301  Identities=19%  Similarity=0.216  Sum_probs=194.7

Q ss_pred             chHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001224          168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP  247 (1120)
Q Consensus       168 ~~rL~~ll~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1120)
                      +-.|..|+.|.++.|+.+|+++.+....+|||..|+|+.+...+..|-++.   +-                        
T Consensus      1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t---~R------------------------ 1064 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMT---GR------------------------ 1064 (1516)
T ss_pred             CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhh---hc------------------------
Confidence            336999999999999999999999999999999999999554443333332   10                        


Q ss_pred             CcccccccCCCCCCCCcccccccCCCCCCCccccccccccccCCCCCCCCCCcCCCCCCchhhhcccCCCCCcccccccc
Q 001224          248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPV  327 (1120)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~~~v~~~v  327 (1120)
                                                              +......+.+..|.-+-.|...+..|.|.           
T Consensus      1065 ----------------------------------------l~~rel~~~y~gV~g~~~dr~~IFSRFr~----------- 1093 (1516)
T KOG1832|consen 1065 ----------------------------------------LGTRELQSFYSGVHGNRRDRQFIFSRFRS----------- 1093 (1516)
T ss_pred             ----------------------------------------ccchhhcCcccccccCcccchhhHhhccc-----------
Confidence                                                    00001111122222232333333333322           


Q ss_pred             ccccccccCCCCcCCCCcCCCCCCCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceee
Q 001224          328 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV  407 (1120)
Q Consensus       328 ~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~  407 (1120)
                        |                           ...-.|...-+|++||-+.++ |+.|+..|.|+++++.+|.....     
T Consensus      1094 --w---------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s----- 1138 (1516)
T KOG1832|consen 1094 --W---------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES----- 1138 (1516)
T ss_pred             --c---------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-----
Confidence              2                           112237788999999999995 99999999999999999987653     


Q ss_pred             eccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCc
Q 001224          408 WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  485 (1120)
Q Consensus       408 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~  485 (1120)
                                    ..+|..+|+.+.=|.||..+++.+.-.  ...+|++.+-  .....++.    .-.++.|+.....
T Consensus      1139 --------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~ 1198 (1516)
T KOG1832|consen 1139 --------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF 1198 (1516)
T ss_pred             --------------ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH
Confidence                          678999999999999999888765433  4779998762  22222332    3467889877553


Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEe-ec---cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIF-EG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW  561 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  561 (1120)
                        -+.|.......+||++++..+.++ .+   ....-....|+|.  ..+++   .||.+  ||++..+.+..|..-.. 
T Consensus      1199 --r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl---ndGvL--WDvR~~~aIh~FD~ft~- 1268 (1516)
T KOG1832|consen 1199 --RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL---NDGVL--WDVRIPEAIHRFDQFTD- 1268 (1516)
T ss_pred             --HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceEe---eCcee--eeeccHHHHhhhhhhee-
Confidence              334444456889999999887763 22   1111233445443  23444   25544  99987655544432110 


Q ss_pred             eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224          562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  641 (1120)
Q Consensus       562 v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  641 (1120)
                            .               ..=.|+|.|+.++.-++     |||+++.+.++....-.    -..+.|+..|..+..
T Consensus      1269 ------~---------------~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1269 ------Y---------------GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             ------c---------------ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ceEEEeccCccchhh
Confidence                  0               01136777778888775     99999998887765332    245788888876654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.2e-10  Score=131.17  Aligned_cols=192  Identities=11%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  498 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~  498 (1120)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            34567789999999999999987643   469999999887543    3334456678999999996 344667788766


Q ss_pred             EEEC--CCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCeEEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeE
Q 001224          499 VWDA--TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       499 vwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      ||.+  ..+. ...+..+.+......|+  +||+.|+..+. +|...+|.++... ....+......             
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-------------  329 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-------------  329 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC-------------
Confidence            6654  4443 55565555555666775  45566665553 5667777654221 11111111111             


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                              .....|+|+|++++..+.++   .|.+||+.+++... +....   ......|+|||+.|+..+.++
T Consensus       330 --------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~---~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        330 --------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT---RDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             --------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC---CccCceECCCCCEEEEEEecC
Confidence                    12245666667777666543   69999998887543 32221   246789999999998887654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3.3e-10  Score=115.73  Aligned_cols=255  Identities=12%  Similarity=0.084  Sum_probs=175.5

Q ss_pred             cCCCCceEEEEecCCCeEEEEEe-CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      .....|+.++|.-|++.=+..+. .|-.+.............    .|++.         .....+.+|..++..  ...
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~  117 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT  117 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence            35578888999887764455554 555566666555443321    12211         233445566666654  446


Q ss_pred             EEEEECCCeEEEEEccCCceee-eeeeecccccCeEEEEEcCCCCceEEEEecCC--CcEEEEECCCCceeEEeecc---
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEGH---  514 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d--~~i~vwd~~~~~~~~~~~~h---  514 (1120)
                      |++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++.... ++++||..  ..+.|||++..+.+.+-+.-   
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD  195 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND  195 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence            7888889999999998443100 11123323 56777887777775 67779988  88999999988666543321   


Q ss_pred             ----c--cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          515 ----E--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       515 ----~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                          .  -.++++.|.+......|++++.-+.+++||.+.+.. ...+.....                     .+.++.
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~~  254 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISSTG  254 (412)
T ss_pred             cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceeee
Confidence                1  234566676654467899999999999999986432 333433344                     444555


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEE-EecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ..|.++.+++|..-|.+..+|++.++.... +++-  .+.++++..+|.++++++++-|..+||+|+.+.
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            555666899999999999999999988776 5544  447999999999999999999999999999885

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.30  E-value=4.6e-09  Score=111.09  Aligned_cols=133  Identities=11%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEE--EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224          888 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS--SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       888 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s--~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  965 (1120)
                      ..++++++.... +....+-.++|...+|.|+++.+++  |-.+..+.++|+++.     ...-.+..      .=..+.
T Consensus       255 snLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~~  322 (561)
T COG5354         255 SNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTIF  322 (561)
T ss_pred             ceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------cccccc
Confidence            468888887433 3333356789999999999887664  457888999999883     12222222      236788


Q ss_pred             EccCCcEEEE-Ee---CCeEEEEEcCCceeee-ccccCCCCCCeeEEEECCCCcEEEEEE------cCCcEEEEEcCCcc
Q 001224          966 FHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANLK 1034 (1120)
Q Consensus       966 fspdg~~la~-~~---d~~v~i~d~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~------~Dg~v~iwd~~~~~ 1034 (1120)
                      |+|.+++++. |.   .|.+.+||....-... .+.    ....+-+.|||||+++.+..      .|..|.|||+....
T Consensus       323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            9999999988 43   3689999987654433 443    33455678999999988765      47889999987654


Q ss_pred             ee
Q 001224         1035 LR 1036 (1120)
Q Consensus      1035 ~~ 1036 (1120)
                      ..
T Consensus       399 ~f  400 (561)
T COG5354         399 VF  400 (561)
T ss_pred             hh
Confidence            43

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=8.5e-09  Score=105.49  Aligned_cols=256  Identities=13%  Similarity=0.209  Sum_probs=172.1

Q ss_pred             CCCCccEEEEccCCCEEEEEe----CCcEEEEEcCC--Ccee--eeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001224          823 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  893 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw  893 (1120)
                      ....++-++++|+++.|.++.    +|.|..|.++.  |+..  ........+.+.+++++ ++++|+++. .-|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            677788999999999998875    36788777764  4432  22222233448899999 888888776 45799999


Q ss_pred             Eeec-ceeeE--eecccccc----------eEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224          894 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       894 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~  958 (1120)
                      -++. |.+..  .+..|.+.          +....|.|++++|++.+  .| .|.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC-----
Confidence            8865 43221  12235444          78889999999999875  34 49999999876655444444444     


Q ss_pred             CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc--ee--eec---cccC-CCCCCeeEEEECCCCcEEEEEEc-CCcEEE
Q 001224          959 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--EC--VKQ---WVPR-ESSAPITHATFSCDSQLVYACFL-DATVCV 1027 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~--~~--~~~---~~~~-~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~i 1027 (1120)
                      ...+.++|+|++++..+.  -+++|.+|.....  +.  +..   +..+ .-......|.+++||++|.+... ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            356999999999988873  6789999998773  21  111   1110 01556788999999999997753 246888


Q ss_pred             EEcCC--cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCC
Q 001224         1028 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPP 1094 (1120)
Q Consensus      1028 wd~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~ 1094 (1120)
                      |.++.  +++. .+.  ...     .....|-...|.|+ +++|+++..| .+|.|+.+....+.+....
T Consensus       271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence            87753  3322 221  011     12245667899994 6777766655 5899999887666555543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.3e-09  Score=112.92  Aligned_cols=295  Identities=12%  Similarity=0.140  Sum_probs=181.0

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      ..+.-+.|||..++|++-+..-.+.-|+-           .....+.+||..+|.+.............-.-..||.|++
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK  318 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence            34566777777777777665422222210           0011245666677765543322101112223468999999


Q ss_pred             EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeecceeeEeecccccceE
Q 001224          838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT  912 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~  912 (1120)
                      ++|.-...+|.||+..+..++..-.-.-..|....|+| .+.+||.=...     ..+.+-.+.+++.+++-.-|.-.=.
T Consensus       319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc  397 (698)
T KOG2314|consen  319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC  397 (698)
T ss_pred             eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence            99988878899999887555433333456789999999 88888864422     3577777777777776665554444


Q ss_pred             EEEEccCCCEEEEEeC----------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--Ee--C
Q 001224          913 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E  978 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~--d  978 (1120)
                      .|-|-.+|.+|+.--.          -..+.|+.+.....    ++....    ....|...+|-|.|..+++  |.  .
T Consensus       398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI----pve~ve----lke~vi~FaWEP~gdkF~vi~g~~~k  469 (698)
T KOG2314|consen  398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI----PVEVVE----LKESVIAFAWEPHGDKFAVISGNTVK  469 (698)
T ss_pred             EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC----Cceeee----cchheeeeeeccCCCeEEEEEccccc
Confidence            5778788888874321          11244555443211    111111    1136788999999999888  32  3


Q ss_pred             CeEEEEEcCCc----eeeeccccCCCCCCeeEEEECCCCcEEEEEE---cCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          979 TQLAIFETTKL----ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       979 ~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                      .++.+|.+++.    +.+..+.    ....+.+.|||.|++++.+.   ..|.+.++|.+-......-.     +.+   
T Consensus       470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh---  537 (698)
T KOG2314|consen  470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH---  537 (698)
T ss_pred             cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence            57888988742    2222222    35567899999999988765   46889999987533332211     111   


Q ss_pred             CCccceEEEecCCCCCEEEEEeC------CCcEEEEecCCCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1087 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1087 (1120)
                        -....+-|.|+ |+|++++++      |...++|++....
T Consensus       538 --~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  538 --FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             --cccccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence              11125789995 899999876      5567788876544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.27  E-value=3e-10  Score=113.55  Aligned_cols=111  Identities=20%  Similarity=0.335  Sum_probs=90.6

Q ss_pred             CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR  896 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~  896 (1120)
                      ..++|.+++|+|+|+.+|+..   ++.|.+||++ ++.+..+.  ...++.+.|+| +|++|++|+.   .|.|.+||+.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999887653   5789999997 56666664  46788999999 8999998874   3679999999


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeC------CCCEEEEECCC
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDG  939 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~v~iWd~~~  939 (1120)
                      +.+.+.... |. .++.++|+|||++|++++.      |..++||+...
T Consensus       134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            888887765 33 3789999999999998864      78899999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.25  E-value=1.2e-08  Score=109.39  Aligned_cols=238  Identities=9%  Similarity=0.062  Sum_probs=152.0

Q ss_pred             EccCCCEEEEEeC-----------CcEEEEEcCCCceeeeecCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001224          832 LSKNDSYVMSASG-----------GKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ  891 (1120)
Q Consensus       832 ~s~d~~~l~~~sd-----------g~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~  891 (1120)
                      +|||++.+.++..           +.|.+||..+++.+..+.....       ....++++| ||++|++.. . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            9999998887643           6799999999999988764222       244889999 888888665 4 78999


Q ss_pred             EEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-CC
Q 001224          892 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ  970 (1120)
Q Consensus       892 vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-dg  970 (1120)
                      +.|+.+++.+.++.-.. ...-...+.+. .+ .-+.||......++............+.+... ...... .|++ ||
T Consensus       132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~~rP-~~~~~dg  206 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLINHP-AYSNKSG  206 (352)
T ss_pred             EEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCcc-ccccCC-ceEcCCC
Confidence            99999999888776422 11222222222 22 12345555444443322211111122111000 000011 4566 89


Q ss_pred             cEEEEEeCCeEEEEEcCC-----ceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEc----------CCcEEEEEc
Q 001224          971 IHFLVVHETQLAIFETTK-----LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1030 (1120)
Q Consensus       971 ~~la~~~d~~v~i~d~~~-----~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~iwd~ 1030 (1120)
                      +++.++.+|.|.+.|+..     ...+..+...     -..+.+.-+++++|++++++...          .+.|.++|.
T Consensus       207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            999998889999999543     3332222111     02334455999999999887532          247999999


Q ss_pred             CCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecCCCC
Q 001224         1031 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus      1031 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
                      .+++.+.++..      |     ..+..++++| |++ +|++.. .++.|.|.|+.+++
T Consensus       287 ~t~kvi~~i~v------G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       287 KTGKRLRKIEL------G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCeEEEEEeC------C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence            99999998771      2     1233799999 577 777665 68899999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.2e-09  Score=125.36  Aligned_cols=224  Identities=11%  Similarity=0.023  Sum_probs=130.9

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ......+...+.+.+|||||++|+.+...++  .|.+||+.+++...                    +....+.....+|
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~w  269 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRF  269 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeE
Confidence            3345557788999999999998665554444  58889998876532                    1111223456899


Q ss_pred             cCCCCeEEE-EECCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCceeE
Q 001224          435 SPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQY  509 (1120)
Q Consensus       435 spdg~~las-~~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~~~~  509 (1120)
                      ||||+.|+. .+.++.  |.+||+++++..    .+..+...+...+|+|||+. ++++...++  .|.++|+.+++...
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~  344 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR  344 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence            999998876 455664  777788887633    34556566788999999996 333443344  46677877776543


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEec-CCe--EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                       +..........+|+  ++|++|+..+. ++.  |.++|+.++... .+... ......                     
T Consensus       345 -Lt~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p---------------------  398 (448)
T PRK04792        345 -LTFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP---------------------  398 (448)
T ss_pred             -EecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc---------------------
Confidence             22122223334664  45566665544 444  444565554321 11111 111122                     


Q ss_pred             EEcCCCCEEEEEe-CCC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          587 QFDTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       587 ~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                      .|+|+|+.++..+ .+|  .+++++. +|.....+....  ..+...+|+|
T Consensus       399 s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp  446 (448)
T PRK04792        399 SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP  446 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence            3555555565544 333  3777787 555555555332  2466778876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.7e-09  Score=122.97  Aligned_cols=225  Identities=10%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             cCCCCceEEEEecCCCeE--EEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          362 NQGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~l--la~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      .....+..-+|||||+.+  +++...+|  .|.+.++.+|+...                    +....+.....+||||
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPR  241 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCC
Confidence            345566778999999863  33555444  57888888776543                    2223445567899999


Q ss_pred             CCeEEEEEC-----CCeEEEEEccCCc--eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE--ECCC-Cce
Q 001224          438 GSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAK  507 (1120)
Q Consensus       438 g~~las~~~-----dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw--d~~~-~~~  507 (1120)
                      |++||..+.     +-.+.+|++.++.  ..+.  ...++.+.....+|+|||+. ++++...+|...+|  ++.. +..
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~  318 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQS  318 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccc
Confidence            999997653     2234557776532  1221  12223344567899999996 23333456655555  4432 333


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      ...+..+...+....|++  ||+.|+..+.+   ..|.+||+.+++... +......+....|+|||             
T Consensus       319 ~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG-------------  382 (428)
T PRK01029        319 PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS-------------  382 (428)
T ss_pred             eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC-------------
Confidence            445554555666677754  55677665543   468899987754432 22112233444555555             


Q ss_pred             EEEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC
Q 001224          585 VVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  636 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  636 (1120)
                              +.|+...   ....|++||+.+++........+   .+...+|+|-.
T Consensus       383 --------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~  426 (428)
T PRK01029        383 --------LHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP  426 (428)
T ss_pred             --------CEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence                    4555432   24578999998877655443222   35667888743

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.22  E-value=1.5e-09  Score=108.82  Aligned_cols=280  Identities=14%  Similarity=0.199  Sum_probs=172.4

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC-
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-  439 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-  439 (1120)
                      +...+-|.+|.|..+|.+ ||||..+|.|.++.-..... +..++... .+...+.+-.-.--.-...|..+.|.++++ 
T Consensus        22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             echhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            335678999999999995 99999999999997543222 11111100 000001110000111235789999998654 


Q ss_pred             -eEEEEECCCeEEEEEccCCceee------------------e--------------eee-ecccccCeEEEEEcCCCCc
Q 001224          440 -LFGVAYSRHIVQIYSYHGGDEVR------------------Q--------------HLE-IDAHVGGVNDIAFSHPNKQ  485 (1120)
Q Consensus       440 -~las~~~dg~v~iwd~~~~~~~~------------------~--------------~~~-l~~h~~~V~~v~~s~d~~~  485 (1120)
                       .++..+.|.+|++|.+.......                  .              ... -.+|.--|+++.++.|+. 
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-  177 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-  177 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence             56677889999999876322110                  0              000 135777799999999998 


Q ss_pred             eEEEEecCCCcEEEEECCCCce---eEEeecc-----ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce----
Q 001224          486 LCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----  553 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----  553 (1120)
                       .++++ +|=.|.+|+++--..   +..++.+     +.-|++..|||... .+++-.+..|+|++.|++......    
T Consensus       178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence             45555 577899999873322   2222322     24577888988765 466666778999999998532211    


Q ss_pred             eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeEEEecCCCC--------
Q 001224          554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL--------  624 (1120)
Q Consensus       554 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~--------  624 (1120)
                      .+..+..+        ..+..+. .--..|..+.|+.+|+++++-+ --+|++||+ ...+++.+++.|...        
T Consensus       255 lfEepedp--------~~rsffs-eiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  255 LFEEPEDP--------SSRSFFS-EIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             hhccccCC--------cchhhHH-HHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence            11111111        1100000 0011345566777777777644 368999999 456677776654321        


Q ss_pred             --CCc---CeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          625 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       625 --~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                        ..|   ..++|+.++.++++|+....+++++...|.
T Consensus       325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence              112   358899999999999999999999977663

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.9e-09  Score=123.18  Aligned_cols=227  Identities=9%  Similarity=0.040  Sum_probs=135.0

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      ..+...+..+...+...+|||||++|+.+...+  ..|.+||+.+++...                    +....+.+..
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~  247 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA  247 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence            334455566788899999999999865555443  368999998886543                    2223334567


Q ss_pred             EEEcCCCCeEEE-EECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--cEEEEECCCCc
Q 001224          432 VIWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGA  506 (1120)
Q Consensus       432 l~~spdg~~las-~~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~i~vwd~~~~~  506 (1120)
                      .+|||||++|+. .+.+|  .|.+||+++++..    .+..+........|+|||+. ++++...++  .|.++|+.+++
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence            899999999885 44454  5888899987643    25556666778899999996 333333333  57788887777


Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEec-CC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      ... +...........|+  ++|+.|+..+. ++  .|.+||+.+++... +.. ........                 
T Consensus       323 ~~~-lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~-----------------  380 (430)
T PRK00178        323 AER-VTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPS-----------------  380 (430)
T ss_pred             EEE-eecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCce-----------------
Confidence            533 22111222334554  45567766554 33  47778877644321 111 11111223                 


Q ss_pred             eEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          584 GVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                          |+|+|+.++..+.+   ..|.++++. +.....+....  ..+...+|+|
T Consensus       381 ----~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        381 ----VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             ----ECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCC--CCcCCCccCC
Confidence                45555566655432   346777774 33333443322  2356677776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.21  E-value=1.3e-09  Score=109.34  Aligned_cols=213  Identities=13%  Similarity=0.154  Sum_probs=140.2

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEE-ccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      .+.||.+.|++...-|-..-+.+.+.|.+++||- .++++.-..+  ...-..+++++.+.++..  .|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence            4789999999999999888899999999999995 4444422211  112356889999999888  6888989999988


Q ss_pred             EECCC----CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC-CCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224          500 WDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       500 wd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      +.+..    ...++....|...|..+.|+..+  .++++.+.|..+. |-.. .+..+-.+..     .+.+..++    
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~-----~~~~t~~~----  162 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFA-WHCTESGNRLGGYNF-----ETPASALQ----  162 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceE-EEeeccCCcccceEe-----eccCCCCc----
Confidence            87653    34456667899999999886555  6899999888775 4332 2211110000     00000000    


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                                   ++-  .+...|...|.|.+-.+.  .-..+.++.++  ...+.+++|.+..+.|.+|..|..+.+||
T Consensus       163 -------------~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd  225 (404)
T KOG1409|consen  163 -------------FDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWD  225 (404)
T ss_pred             -------------eee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEe
Confidence                         000  023444455555554443  33455555544  55899999999999999999999999999


Q ss_pred             ccCcchhhhhcccc
Q 001224          653 TSDGIRLLRTFENL  666 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~  666 (1120)
                      +.-.......+.+|
T Consensus       226 igg~~g~~~el~gh  239 (404)
T KOG1409|consen  226 IGGRKGTAYELQGH  239 (404)
T ss_pred             ccCCcceeeeeccc
Confidence            86553333333333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=6e-09  Score=120.57  Aligned_cols=191  Identities=14%  Similarity=0.115  Sum_probs=123.3

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--c
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  496 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~  496 (1120)
                      +..+...+...+|||||++||.++.+   ..|.+||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44566689999999999999987654   479999999886432    3445567778999999996 344555444  5


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      |++||+.++... .+..+........|+  ++|+.|+..+. ++  .|.++|+.+.+ ...+.......           
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~-----------  324 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYN-----------  324 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCc-----------
Confidence            899998877643 344444444455665  45667765554 33  56666665432 12222222222           


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                                ....|+|++++++.++.++   .|.+||+.++... .+....   ......|+|||++|+..+.++
T Consensus       325 ----------~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       325 ----------ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             ----------cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence                      3345566666777777665   7899999876543 332221   235578999999988877754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.17  E-value=3.1e-09  Score=123.03  Aligned_cols=166  Identities=17%  Similarity=0.106  Sum_probs=112.2

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeCC--CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      .....+..+...+...+|||||++|+.+...+  ..|++||+.+++...                    +..+.+.+.++
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~  239 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP  239 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence            34455666777899999999999755444333  479999999876543                    23345567789


Q ss_pred             EEcCCCCeEEEE-ECCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec-CCC--cEEEEECCCCc
Q 001224          433 IWSPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGA  506 (1120)
Q Consensus       433 ~~spdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s-~d~--~i~vwd~~~~~  506 (1120)
                      +|+|||+.|+.. +.++  .|.+||+.++....    +..+........|+|||++  |+..+ .++  .|.++|+.+++
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----LTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCEEE----CCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence            999999988754 4444  58888998875332    4445555667899999995  44333 333  58888887766


Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEecCC---eEEEEecCCC
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNL  549 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~  549 (1120)
                      . ..+..+...+....|+  ++|.+++.++.++   .|.+||+.+.
T Consensus       314 ~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       314 V-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             E-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCC
Confidence            4 3444445556666765  4557787777665   7888887763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.17  E-value=4.9e-09  Score=113.46  Aligned_cols=188  Identities=16%  Similarity=0.306  Sum_probs=148.1

Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeeeecCC---CCCeEEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI  890 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v  890 (1120)
                      |-..++|... ||.+++|+...++....+.+.   .+..++.+|.      |             .|...+|-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456788777 999999999988877666432   2333444432      1             134488889999999


Q ss_pred             EEEEeecceeeEeec--ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          891 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       891 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      .+|++..|+....+.  .|.+.|+++.++.+-..|.|++.|+.+..|+.....     ......+..+   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence            999999999888885  599999999999999999999999999999998743     3444444333   678999999


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-----CcEEEEE-EcCCcEEEEEcCC
Q 001224          969 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYAC-FLDATVCVFSAAN 1032 (1120)
Q Consensus       969 dg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~-~~Dg~v~iwd~~~ 1032 (1120)
                      ||+.++++ .++|++||+++++.+..|.  +|.++|.+++|..+     |.+++++ ..+..+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99998875 4789999999999999988  99999999999887     7776644 4456688886644

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1.3e-08  Score=108.47  Aligned_cols=321  Identities=11%  Similarity=0.163  Sum_probs=201.6

Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEEE
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA  652 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd  652 (1120)
                      +.+.|||-|.+|++--..| |.+|--.+...++.+. |.   .|.-+.|||+.+||++-+..           ..+.|||
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            3456666666777766544 7789777766777775 22   47789999999999986532           4567777


Q ss_pred             ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224          653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  732 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  732 (1120)
                      +.+| ...+.+....                                                              +..
T Consensus       289 I~tG-~lkrsF~~~~--------------------------------------------------------------~~~  305 (698)
T KOG2314|consen  289 IATG-LLKRSFPVIK--------------------------------------------------------------SPY  305 (698)
T ss_pred             cccc-chhcceeccC--------------------------------------------------------------CCc
Confidence            7776 3333332100                                                              000


Q ss_pred             eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                                               ..-.-+.||.|+++++....+ .|.||+...              ..+.|.   +
T Consensus       306 -------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~---K  342 (698)
T KOG2314|consen  306 -------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPS--------------FMLLDK---K  342 (698)
T ss_pred             -------------------------cccceEEeccCCceeEEeccc-eEEEEecCc--------------eeeecc---c
Confidence                                     111235789999988877775 677776421              011111   1


Q ss_pred             cccccCCCCCCCCCccEEEEccCCCEEEEEe---C---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe-
Q 001224          813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-  885 (1120)
Q Consensus       813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-  885 (1120)
                      .+        .-..|....|+|.+..||.-.   +   .++.+..+-+++.+++-+-+.-.=..+-|-. .|.+|+.-- 
T Consensus       343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd  413 (698)
T KOG2314|consen  343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD  413 (698)
T ss_pred             cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence            11        345678889999999999764   1   4588888888888777665544444556666 677776432 


Q ss_pred             ---------CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCC
Q 001224          886 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG  953 (1120)
Q Consensus       886 ---------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~  953 (1120)
                               .-..+.|+.++....--..-.-...|...+|-|.|..+++-+.   ..++.+|.+++... ....+..++.
T Consensus       414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk  492 (698)
T KOG2314|consen  414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK  492 (698)
T ss_pred             eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence                     1123445555543322222224567889999999988775543   35789999885222 2223333333


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc------CC
Q 001224          954 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1023 (1120)
Q Consensus       954 ~~~~~~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------Dg 1023 (1120)
                      .     ....+.|+|.|++++++    ..|.+..+|+....+..+-.+ . ....+.+-|.|.|+|+++++.      |.
T Consensus       493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~  565 (698)
T KOG2314|consen  493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDN  565 (698)
T ss_pred             c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhcccc
Confidence            2     34789999999999883    467899999986444333221 2 335678899999999999885      44


Q ss_pred             cEEEEEcCC
Q 001224         1024 TVCVFSAAN 1032 (1120)
Q Consensus      1024 ~v~iwd~~~ 1032 (1120)
                      --+||+...
T Consensus       566 GYri~tfqG  574 (698)
T KOG2314|consen  566 GYRIFTFQG  574 (698)
T ss_pred             ceEEEEeec
Confidence            456666554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.16  E-value=1.6e-09  Score=117.11  Aligned_cols=147  Identities=15%  Similarity=0.232  Sum_probs=120.2

Q ss_pred             CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224          767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG  845 (1120)
Q Consensus       767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg  845 (1120)
                      .+-..++-+...|.|.+|+...                      |++.. .+....|.+.|.++.++.+-..|.+++ |+
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~----------------------g~it~-~~st~~h~~~v~~~~~~~~~~ciyS~~ad~  124 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAG----------------------GEITA-KLSTDKHYGNVNEILDAQRLGCIYSVGADL  124 (541)
T ss_pred             CCceEEEeecCCccEEEEEecC----------------------CeEEE-EEecCCCCCcceeeecccccCceEecCCce
Confidence            3444577777788888887632                      22211 133345999999999999999999988 89


Q ss_pred             cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC-----C
Q 001224          846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----L  920 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~  920 (1120)
                      .+..|+..+....+.++.....+.+++++| |+..|++|+  ++|++||+++++.+..|.||.++|.++.|..+     |
T Consensus       125 ~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G  201 (541)
T KOG4547|consen  125 KVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIG  201 (541)
T ss_pred             eEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEecccccc
Confidence            999999999999999998899999999999 899999876  68999999999999999999999999999877     5


Q ss_pred             CEEE-EEeCCCCEEEEECCC
Q 001224          921 NVLV-SSGADSQLCVWSSDG  939 (1120)
Q Consensus       921 ~~l~-s~s~Dg~v~iWd~~~  939 (1120)
                      .++. +...+.-+.+|-++.
T Consensus       202 ~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  202 KYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ceeeeccccccceeEEEEEc
Confidence            5554 555666788897766

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=7.5e-09  Score=101.87  Aligned_cols=274  Identities=12%  Similarity=0.141  Sum_probs=168.7

Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEc---CCCc-eEEEeccCceEEEeeecccccCCCCccccccCcee
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL  805 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  805 (1120)
                      |.+.+|++...+... ...+..   .....+..+.|.   .+|. .++-+-..|.|.+|........           ..
T Consensus        46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss-----------~~  110 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS-----------VH  110 (339)
T ss_pred             cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceee-----------ee
Confidence            677788877655444 221111   122334444443   2344 4555666788888765321110           00


Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEE
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIA  882 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la  882 (1120)
                      ..+-+...+        ......++.|++.+..++++. +|.+.+-+......  ++..++|.-++..+.|+..+.+++.
T Consensus       111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy  182 (339)
T KOG0280|consen  111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY  182 (339)
T ss_pred             ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence            011111000        111245677888888888876 78888666554443  3478899999999999987888999


Q ss_pred             EEeCCCcEEEEEee-cceeeEe-ecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCC
Q 001224          883 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  959 (1120)
Q Consensus       883 sg~~dg~v~vwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~  959 (1120)
                      +|++|+.+..||++ .++.+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.+.-.+    ++.  .+  +..+
T Consensus       183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl~--~~--~v~G  254 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PLF--KA--KVGG  254 (339)
T ss_pred             ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----ccc--cC--cccc
Confidence            99999999999998 3444433 566888999998885 578999999999999999885221    111  11  1125


Q ss_pred             CCcEEEEccC--CcEEEEEeCCeEEEEEcCCceee---eccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEE-EEEcCC
Q 001224          960 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1032 (1120)
Q Consensus       960 ~i~~~~fspd--g~~la~~~d~~v~i~d~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~-iwd~~~ 1032 (1120)
                      .|..+..+|.  ++.|+++.-...+|-+...+...   .......|.+-+..-.|.....+||+++ .|..++ +|-..+
T Consensus       255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            7899999985  44556666666677666544322   1111224555555556644445678754 466644 776555


Q ss_pred             cc
Q 001224         1033 LK 1034 (1120)
Q Consensus      1033 ~~ 1034 (1120)
                      ++
T Consensus       335 ~~  336 (339)
T KOG0280|consen  335 GE  336 (339)
T ss_pred             CC
Confidence            44

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=3.3e-08  Score=114.35  Aligned_cols=199  Identities=13%  Similarity=0.112  Sum_probs=122.7

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC--c
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  496 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~--~  496 (1120)
                      +..+...+...+|||||++|+..+.+   ..|.+||+.+++...    +....+.+...+|+|||++ ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            44567789999999999999887644   368999999886432    3333445667999999996 333555555  5


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCC--eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      |.+||+.+++.. .+..+........|++  +|+.|+..+ .+|  .|.++++.+++.. .+......            
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~------------  332 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNY------------  332 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC------------
Confidence            888899887654 4544555555566654  555665544 344  4666666544321 11111111            


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G  647 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~  647 (1120)
                               .....|+|+++.++..+. ++  .|.+||+.+++.. .+... .  ......|+|||++++..+.+ +  .
T Consensus       333 ---------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        333 ---------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             ---------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence                     122456666667766553 22  5888999887643 33321 1  22357899999999877654 3  3


Q ss_pred             EEEEEcc
Q 001224          648 IKILATS  654 (1120)
Q Consensus       648 i~iwd~~  654 (1120)
                      +.+++..
T Consensus       400 l~~~~~~  406 (430)
T PRK00178        400 LMLVSIN  406 (430)
T ss_pred             EEEEECC
Confidence            5555653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.3e-08  Score=111.63  Aligned_cols=219  Identities=12%  Similarity=0.070  Sum_probs=125.8

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE---EEECCC--eEEEEEccCCcee
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV  461 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~dg--~v~iwd~~~~~~~  461 (1120)
                      +.|.+.|.+.+....                    +......+..-+|||||+.++   +...+|  .|.+.++.+++..
T Consensus       165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~  224 (428)
T PRK01029        165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK  224 (428)
T ss_pred             ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence            467777776554322                    333455677789999998633   343443  5777788887643


Q ss_pred             eeeeeecccccCeEEEEEcCCCCceEEEEecC----CCcEEEEECCCC---ceeEEeeccccCeEEEeeccCCCceEEEE
Q 001224          462 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS  534 (1120)
Q Consensus       462 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  534 (1120)
                      +    +....+.....+|||||+++ +++...    |..+.+|++..+   .......++.+.....+|+  +||+.|+.
T Consensus       225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf  297 (428)
T PRK01029        225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF  297 (428)
T ss_pred             E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence            3    33344556678999999962 333322    333455777653   3333332222334456664  56666665


Q ss_pred             Ee-cCCeEEEEecC--CC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC---CCeEEEE
Q 001224          535 TA-LDGKIKAWLYD--NL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW  607 (1120)
Q Consensus       535 ~~-~dg~i~iwd~~--~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iw  607 (1120)
                      .+ .+|...+|.+.  .. +....+......+.                     ...|+|||+.|+..+.   ...|.+|
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~---------------------~p~wSPDG~~Laf~~~~~g~~~I~v~  356 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS---------------------CPAWSPDGKKIAFCSVIKGVRQICVY  356 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCcc---------------------ceeECCCCCEEEEEEcCCCCcEEEEE
Confidence            55 46655566442  21 11222222222233                     3445555556665543   2469999


Q ss_pred             ECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC---CCcEEEEEccCc
Q 001224          608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG  656 (1120)
Q Consensus       608 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~  656 (1120)
                      |+.+++.......   ...+....|+|||+.|+....   ...|.++++.++
T Consensus       357 dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        357 DLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             ECCCCCeEEccCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9998876543322   124567999999998876543   346778887665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=5.4e-08  Score=111.84  Aligned_cols=198  Identities=14%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--  496 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--  496 (1120)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            44466789999999999999987543   258888998876432    2222334457899999996 3445566665  


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCe--EEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      |.+||+.+++. ..+..+.......+|++  +|+.|+..+ .++.  |.++|+.+++. ..+.........         
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~---------  354 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLG---------  354 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcC---------
Confidence            78888887764 44444555556677754  456665544 3444  55555554332 111111111122         


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-Cc--
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG--  647 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~--  647 (1120)
                                  .+|+|+|++++..+. ++  .|.++|+.+++.. .+....   ......|+|||+.|+..+.+ +.  
T Consensus       355 ------------~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        355 ------------GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             ------------eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence                        345555556665543 33  4666788877643 232221   12346899999988876654 33  


Q ss_pred             EEEEEc
Q 001224          648 IKILAT  653 (1120)
Q Consensus       648 i~iwd~  653 (1120)
                      +.+++.
T Consensus       419 l~~~~~  424 (448)
T PRK04792        419 LAAVSI  424 (448)
T ss_pred             EEEEEC
Confidence            556665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=5.8e-08  Score=110.31  Aligned_cols=306  Identities=12%  Similarity=0.099  Sum_probs=174.1

Q ss_pred             eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224          530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  609 (1120)
Q Consensus       530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  609 (1120)
                      ..++.++.+|.|..+|..+++................                       .++..++.++.+|.++.+|.
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~-----------------------v~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG-----------------------ADGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE-----------------------EcCCEEEEEcCCCEEEEEEC
Confidence            4788888889999999888877765544332111111                       12346888889999999999


Q ss_pred             CCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhH
Q 001224          610 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA  689 (1120)
Q Consensus       610 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1120)
                      .+|+.+........  .......  .+..++.++.+|.+..||..++. .............         +.       
T Consensus       123 ~tG~~~W~~~~~~~--~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~---------~~-------  181 (377)
T TIGR03300       123 EDGKELWRAKLSSE--VLSPPLV--ANGLVVVRTNDGRLTALDAATGE-RLWTYSRVTPALT---------LR-------  181 (377)
T ss_pred             CCCcEeeeeccCce--eecCCEE--ECCEEEEECCCCeEEEEEcCCCc-eeeEEccCCCcee---------ec-------
Confidence            99998877654332  1111111  35577778889999999999883 3222211100000         00       


Q ss_pred             hhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC-ccccccEEEEEEcC-
Q 001224          690 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE-NLRATKISRLIFTN-  767 (1120)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~-  767 (1120)
                                         . ... ... .+..++.+..++.+..+|..++...-... +..+. .........+.-+| 
T Consensus       182 -------------------~-~~s-p~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~  238 (377)
T TIGR03300       182 -------------------G-SAS-PVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPV  238 (377)
T ss_pred             -------------------C-CCC-CEE-ECCEEEEECCCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccE
Confidence                               0 000 000 12355666677788888776543221111 00000 00000000000011 


Q ss_pred             -CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC
Q 001224          768 -SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG  845 (1120)
Q Consensus       768 -~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg  845 (1120)
                       .+..+++++.+|.+..||..+++             .+|....+              .....+  .++..+++++ +|
T Consensus       239 ~~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G  289 (377)
T TIGR03300       239 VDGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS--------------SYQGPA--VDDNRLYVTDADG  289 (377)
T ss_pred             EECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC--------------CccCce--EeCCEEEEECCCC
Confidence             24467777888888888864322             23433211              011122  2445666666 89


Q ss_pred             cEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224          846 KISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  924 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  924 (1120)
                      .+..+|..+++.+....... ....+...   .+..|++++.+|.|+++|..+|+.+..+..+...+..--...+ ..|+
T Consensus       290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~  365 (377)
T TIGR03300       290 VVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLL  365 (377)
T ss_pred             eEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEE
Confidence            99999999998775553221 12222233   2457888999999999999999999888876654433222223 3588


Q ss_pred             EEeCCCCEEEE
Q 001224          925 SSGADSQLCVW  935 (1120)
Q Consensus       925 s~s~Dg~v~iW  935 (1120)
                      .++.||.|..+
T Consensus       366 v~~~dG~l~~~  376 (377)
T TIGR03300       366 VQTRDGDLYAF  376 (377)
T ss_pred             EEeCCceEEEe
Confidence            88899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.05  E-value=2.3e-08  Score=98.48  Aligned_cols=192  Identities=19%  Similarity=0.117  Sum_probs=135.2

Q ss_pred             CCCCceEEEEec---CCCeEEEEEeCCCcEEEEecCCCceeEe-eceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          363 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       363 h~~~v~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      ..+.+..|.|.-   +|...++-+-.+|.|.++.....+.... +.+..              ..-....-.++.|++.|
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~  133 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSG  133 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccC
Confidence            446677777763   4554567777789999988754333221 11100              00001134678899999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEE-eecccc
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA  516 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~-~~~h~~  516 (1120)
                      ..++++-.+|.+.+-+..... +.....+++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+-|..
T Consensus       134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence            999999999998855544433 3444468899999999999987776 89999999999999999 4555554 456889


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  571 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  571 (1120)
                      .|.++.-++ +...++++|+.|-.|++||.++.+....-..-.+.|..+..+|.-
T Consensus       212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            999887554 456799999999999999999766555444445666666666643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=1.3e-07  Score=107.43  Aligned_cols=228  Identities=16%  Similarity=0.121  Sum_probs=134.1

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  458 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~  458 (1120)
                      .+++++.+|.|.-+|..+|+.+-+..+.                .....   ..+  .++..++.++.++.+..+|.++|
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG  125 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG  125 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence            3778888999999999999876542221                00111   111  25778888999999999999999


Q ss_pred             ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE-----EEeeccCCCceEEE
Q 001224          459 DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQFIF  533 (1120)
Q Consensus       459 ~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~  533 (1120)
                      +.+.... +.   +.+.+.-.. .+.  .++.++.++.|..||.++|+.+..+......+.     +...   .+ ..++
T Consensus       126 ~~~W~~~-~~---~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~-~~v~  194 (377)
T TIGR03300       126 KELWRAK-LS---SEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---AD-GGVL  194 (377)
T ss_pred             cEeeeec-cC---ceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---EC-CEEE
Confidence            8665321 11   222221111 233  366677899999999999999877654332211     1111   12 3677


Q ss_pred             EEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001224          534 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  613 (1120)
Q Consensus       534 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  613 (1120)
                      .+..++.+..+|..+++.........         +.+....... ........+  .+..+++++.+|.++.||..+|+
T Consensus       195 ~~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~~-~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~  262 (377)
T TIGR03300       195 VGFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELERL-VDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR  262 (377)
T ss_pred             EECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhhh-hccCCccEE--ECCEEEEEEcCCEEEEEECCCCc
Confidence            78888999999998876554332110         0000000000 000000001  13467778889999999999998


Q ss_pred             eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          614 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       614 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .+.......    .....  .++..+++++.+|.+..+|..++
T Consensus       263 ~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       263 VLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             EEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence            776654211    11122  24566777777788888877655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=1.2e-07  Score=118.88  Aligned_cols=257  Identities=9%  Similarity=0.075  Sum_probs=161.9

Q ss_pred             ccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeecC--------------CCCCeEEEEEecCCCcEEEEE-eCCCc
Q 001224          827 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIG-MDDSS  889 (1120)
Q Consensus       827 v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~lasg-~~dg~  889 (1120)
                      ...+++++++. .+++-. ++.|++||... ..+..+.+              .-.....+++++ ++..|+++ ..++.
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~  647 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA  647 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence            35688987644 444444 68899999764 44433322              112357899999 56555444 45578


Q ss_pred             EEEEEeecceeeEeeccc-----------------ccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccce---ee
Q 001224          890 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL  948 (1120)
Q Consensus       890 v~vwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~  948 (1120)
                      |+++|+.++. +.++.+-                 -..-+.++|+| ++..+++.+.++.|++||..++......   ..
T Consensus       648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            9999987764 3333210                 11236799999 5666778788899999998775431100   00


Q ss_pred             eccCCCC---CCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceeeecc-----------ccC--------CCCCCe
Q 001224          949 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPR--------ESSAPI 1004 (1120)
Q Consensus       949 ~~~~~~~---~~~~~i~~~~fspdg~~la~--~~d~~v~i~d~~~~~~~~~~-----------~~~--------~h~~~v 1004 (1120)
                      ....+..   ........++++|+|.+|++  ..++.|++||+.++......           ...        ..-...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence            0001110   11134578999999986665  36789999999876532110           000        011235


Q ss_pred             eEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc-ccCCCCC--CCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1005 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1005 ~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~-~~~~g~~--~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      ..++|+++|.++++-+.++.|++||..++.......... ...+|..  ..--.|..+++++ +|+++++-+.++.|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence            689999999988888889999999999887664332100 0011100  1112466899999 68889998999999999


Q ss_pred             ecCCCC
Q 001224         1082 EPLESE 1087 (1120)
Q Consensus      1082 ~~~~~~ 1087 (1120)
                      |+.+++
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            998876

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=1.6e-09  Score=114.59  Aligned_cols=239  Identities=13%  Similarity=0.173  Sum_probs=171.2

Q ss_pred             CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC-------CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                      +|...|+.++--.+.+.+++++ |.+|++|.++       +..+..++..|..+|..+.|-. +.++++++  ||-|.+|
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW  809 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence            4888999988777777888888 9999999986       2346778899999999999998 88888764  7899999


Q ss_pred             EeecceeeEeecc--cccceEEEEEcc--CCCEEEE-EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          894 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       894 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      |.--++.+..+..  ..+.+..+..-+  |...++. ++...+|+++|.+.++...........+..   ..+++++..+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn---a~~R~iaVa~  886 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN---ALTRAIAVAD  886 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc---hheeEEEecc
Confidence            9888877664321  122333333323  3444444 478899999999987654433333333332   4678999999


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEE-EEcCCcceeeeeCCCcccC
Q 001224          969 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus       969 dg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~i-wd~~~~~~~~~~~~~~~~~ 1046 (1120)
                      .|++++++ ++|.|.+.|.++|..+..|.+-  .-....++ .|..+.|+....|.++.| |...+|....+.++.... 
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep-  962 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP-  962 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc-
Confidence            99999996 8999999999999999988742  33334444 467778888888999999 999888887666522211 


Q ss_pred             CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEe
Q 001224         1047 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus      1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
                                  ..|..+-|..|++....+.+.||.
T Consensus       963 ------------ahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  963 ------------AHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             ------------hhhhhccCceeEEeccCcEEEEEe
Confidence                        223323356677776666677775

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=3.3e-09  Score=127.37  Aligned_cols=198  Identities=19%  Similarity=0.351  Sum_probs=156.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +-..|.++.=+|...+ .+||+.||.|++|.+..+..+..     |+            ..|. ..|+.+.|+.+|+.+.
T Consensus      2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence            4578889999999985 89999999999999998887763     22            2233 7899999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEec---CCCcEEEEECCC-CceeEEeeccccCe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-GAKQYIFEGHEAPV  518 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vwd~~~-~~~~~~~~~h~~~v  518 (1120)
                      .+..||.+.+|.+..    +.....+.|....+...|-.  .  .+++++   +++.+.+||..- +..-..-..|.+.+
T Consensus      2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred             eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence            999999999999883    24446778999999999986  3  466654   578899999653 22222227799999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      +++++.|..  +.|++|+.+|.|++||++..+.+..+..                              ++ ...++++|
T Consensus      2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVTG 2386 (2439)
T ss_pred             eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeecc
Confidence            999986554  7999999999999999998776655443                              11 12579999


Q ss_pred             eCCCeEEEEECCCCceeEEEec
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      +..|.++||++.....+..+..
T Consensus      2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CcccceEEEEccccchhhcCch
Confidence            9999999999998887777754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.8e-09  Score=114.23  Aligned_cols=210  Identities=15%  Similarity=0.193  Sum_probs=148.8

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC-cee---eeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      .+.||...|..++--.+.+-+++++.|++|++|.++.. ..+   .+.++++.|..+|.++.|..+.+  +++++  |+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence            47899999999988888899999999999999998742 222   25568899999999999999988  56665  889


Q ss_pred             EEEEECCCCceeEEee-----ccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224          497 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  570 (1120)
                      |.+||.--|+.+....     +..+.|.++   ++-+...++.| +...+|+++|.+..+-...+.....      -.| 
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------~~P-  875 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------PGP-  875 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC------CCC-
Confidence            9999988887765332     222334443   34344556555 6788999999887554332221100      011 


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  650 (1120)
                               ...++++++.+.|+.++++-.+|.|.+.|.++|+.+..+..-.-  ....++ .|..+.|+....|.++.+
T Consensus       876 ---------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  876 ---------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             ---------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence                     12566778888888999999999999999999998877653211  111122 355667777778888888


Q ss_pred             -EEccCc
Q 001224          651 -LATSDG  656 (1120)
Q Consensus       651 -wd~~~~  656 (1120)
                       |...++
T Consensus       944 nWhaldg  950 (1034)
T KOG4190|consen  944 NWHALDG  950 (1034)
T ss_pred             eehhcCC
Confidence             876655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.93  E-value=1.3e-08  Score=105.00  Aligned_cols=168  Identities=17%  Similarity=0.137  Sum_probs=114.4

Q ss_pred             ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC
Q 001224          367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  446 (1120)
Q Consensus       367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  446 (1120)
                      +..+.++|.++ |+|++..+....++++......    .+.++..         ....-...++.+..+......-.++.
T Consensus        65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkagD  130 (390)
T KOG3914|consen   65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKRPTAISFIREDTSVLVADKAGD  130 (390)
T ss_pred             ccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccCcceeeeeeccceEEEEeecCC
Confidence            34455667777 6888888888777777654320    1111100         01112223343433333333333455


Q ss_pred             CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeecc
Q 001224          447 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHH  525 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~  525 (1120)
                      ...+.+|+...+.+.    .+-||-..++.|+|+||++  +++++..|..|||-....-..+..| -||...|..++..+
T Consensus       131 ~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  131 VYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             ceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence            667777777765433    3668999999999999999  7999999999999887766666555 57999999999743


Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  557 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  557 (1120)
                      +   ..|+++|.|++|++||+.+++.+.++..
T Consensus       205 ~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  205 N---YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             C---ceeeecCCCCcEEEEecccCCcccccch
Confidence            3   5799999999999999999888765543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.91  E-value=1e-06  Score=110.79  Aligned_cols=275  Identities=15%  Similarity=0.197  Sum_probs=163.3

Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE-C
Q 001224          368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-S  446 (1120)
Q Consensus       368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~  446 (1120)
                      ..+++++++..++++-+.++.|.+||... +.+....    ....... .....-.++-..-..|+++++++.|.++. .
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig----~~g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIG----STGEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEc----cCCCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            56899987555788888889999999864 3332100    0000000 00000112233468899999988776654 4


Q ss_pred             CCeEEEEEccCCceeeeeee-------eccc-------ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          447 RHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~-------l~~h-------~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      .+.|+++|..++.... +..       ..+.       -..-..++|+|++.. ++++.+.++.|++||..++... .+.
T Consensus       645 n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        645 NHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             CceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-EEe
Confidence            5779999988765221 100       0010       112467999995554 6778888899999998877543 222


Q ss_pred             cc---------------ccCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCceeeeCCCCc-eeEEEEc-CCCCeE
Q 001224          513 GH---------------EAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGTRT  574 (1120)
Q Consensus       513 ~h---------------~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s-~~g~~~  574 (1120)
                      +.               -.....+++++  ++. ++++-+.++.|++||+.+........+.... .....+. .+|...
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~  799 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS  799 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence            11               11234567654  444 5556666799999998865432111100000 0000110 011000


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC------------CCCCcCeEEEcCCCCEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~  642 (1120)
                       . ..-.....++++++|+.+++-+.++.|++||..++....... .+            .......++++++|+++++-
T Consensus       800 -~-~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        800 -E-VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             -h-hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence             0 000123467889999988888899999999998876553331 11            12246789999999998888


Q ss_pred             ECCCcEEEEEccCc
Q 001224          643 TNDNGIKILATSDG  656 (1120)
Q Consensus       643 ~~dg~i~iwd~~~~  656 (1120)
                      +.++.|++||+.++
T Consensus       877 t~Nn~Irvid~~~~  890 (1057)
T PLN02919        877 TNNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCCEEEEEECCCC
Confidence            89999999999876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.86  E-value=8.6e-07  Score=88.35  Aligned_cols=209  Identities=15%  Similarity=0.136  Sum_probs=139.2

Q ss_pred             EEEccCCCEEEEEeCCcEEEEEcCCC--ceeeee---cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224          830 FALSKNDSYVMSASGGKISLFNMMTF--KTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  904 (1120)
Q Consensus       830 l~~s~d~~~l~~~sdg~i~vwd~~~~--~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  904 (1120)
                      ++.+.||+.||+..|..|.|=..++.  ..+.+.   +.....-+.++||| |+.+||.+...|+|++||+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            67789999999999988888766532  122222   22233468899999 99999999999999999987543 3333


Q ss_pred             cc-------cccceEEEEEccC------CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224          905 KG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  971 (1120)
Q Consensus       905 ~~-------h~~~V~~l~~s~d------~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~  971 (1120)
                      ..       -..+|.+|.|-+-      ...|+....+|.++-|-+..+..........+.........|.+++++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       2356777777542      2246677788888888764432222221111111111125899999999999


Q ss_pred             EEEEEe----C--------CeEEEEEcCCceeeec---------------------cc----c--CCCCCCeeEEEECCC
Q 001224          972 HFLVVH----E--------TQLAIFETTKLECVKQ---------------------WV----P--RESSAPITHATFSCD 1012 (1120)
Q Consensus       972 ~la~~~----d--------~~v~i~d~~~~~~~~~---------------------~~----~--~~h~~~v~~l~~s~d 1012 (1120)
                      +|++|+    +        -.+.-|.+-.+...-.                     ..    .  ..-...|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            888741    1        1466776644321100                     00    0  012567899999999


Q ss_pred             CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1013 SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1013 g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      |++||+...+|.|.+|++.+.++.....
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999887766

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=1.2e-06  Score=98.12  Aligned_cols=110  Identities=14%  Similarity=0.339  Sum_probs=82.7

Q ss_pred             eEEEEecCCCeEEEEEeC----CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          368 MSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       368 ~~v~~spdg~~lla~g~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      +-..|+|... ++|+++-    .|.|.||- ++|+......                 .   .-.+++++|+|..-.||.
T Consensus        19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~   76 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQ   76 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhh
Confidence            4457888888 5666643    57788874 4555322100                 0   113567999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      |-.-|.+.+|...+.+.   ......|..+|..+.||++|.  .++|+..-|.|.+|....
T Consensus        77 gwe~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ccccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeee
Confidence            99999999999887542   224557999999999999999  799999999999998763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=1.5e-08  Score=111.27  Aligned_cols=270  Identities=13%  Similarity=0.178  Sum_probs=168.8

Q ss_pred             CcceeeeccCCC--CceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          354 PKTVTRTLNQGS--SPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       354 ~~~~~~~~~h~~--~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      |.+..+.+.|-.  .|-.+.|||... .+-++......-.||++..                ++.....-++.||+.+|+
T Consensus        55 p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~----------------ss~~aIef~lhghsrait  118 (1081)
T KOG0309|consen   55 PFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK----------------SSSNAIEFVLHGHSRAIT  118 (1081)
T ss_pred             CCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc----------------CCccceEEEEecCcccee
Confidence            333334444432  455566665431 1233334444555666543                233333336899999999


Q ss_pred             EEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-cee
Q 001224          431 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ  508 (1120)
Q Consensus       431 ~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~  508 (1120)
                      .+.|.| .-..||+++.|..|..||+.+...  .+.....-...-..|+|+--..  .+.+.+....|++||.+.| .++
T Consensus       119 d~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl  194 (1081)
T KOG0309|consen  119 DINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPL  194 (1081)
T ss_pred             ccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcce
Confidence            999999 456899999999999999998653  2223334445678899998776  3667777889999999865 567


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      ..+++|...|..+.|..... ..+.+.+.||+|++||.+........ .....++..-.+.|-|.-.+          +-
T Consensus       195 ~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~----------~m  263 (1081)
T KOG0309|consen  195 CSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC----------IM  263 (1081)
T ss_pred             EEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE----------ec
Confidence            89999999999988764433 36888999999999998765443322 22233455555555554110          00


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcC----------CCCEEEEEECCCcEEEEEccCc
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ..-.++.+..-.-+.....|+..+ .+.+..+.+|..  .|...-|-.          ..-.|++=+.|..+++|-+.+.
T Consensus       264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             cccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            011111111122233444566544 357788887654  454444432          1337899999999999987653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.83  E-value=7.4e-07  Score=86.80  Aligned_cols=241  Identities=13%  Similarity=0.087  Sum_probs=152.7

Q ss_pred             CCEEEEEe-CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      ..+||.|+ .|...+|...+.+.. .....|...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            34778876 799999999865543 2333344433322211112234556788999999988765433333222233889


Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceee
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  992 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~  992 (1120)
                      +++++|++++++.+....|..|.++..............     ...-.+..|+.....+|++ .||.+.|||++.....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            999999999999999999999999874332222111111     1234788999999999995 9999999999876433


Q ss_pred             eccc---cCCCCCCeeEEEECCCCc--EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224          993 KQWV---PRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus       993 ~~~~---~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
                      ....   -+.|.+.+..+.||+.|-  +|+..-.-+.+.|-|+.+++-...+.+....-..|....+.  ...|+. ++.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~  315 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE  315 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence            2221   235899999999998765  34444445889999999998887776444332233333344  556665 344


Q ss_pred             EEEEEeCCCcEEEEecCC
Q 001224         1068 EFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1068 ~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .+.+.+++ .+.-|++..
T Consensus       316 s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  316 SNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             ccccccch-hhheeeccc
Confidence            44444332 334455544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=1.7e-06  Score=97.71  Aligned_cols=157  Identities=9%  Similarity=0.007  Sum_probs=97.8

Q ss_pred             CCceEEEEecCCCeEEEEEeC---CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      ..+..-.|||||+++++..+.   +..|.++|+.+++...                    +....+.+...+|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            377889999999864554333   3569999998887643                    22344566778899999988


Q ss_pred             EEEE-CC--CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEeeccccC
Q 001224          442 GVAY-SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       442 as~~-~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      +... .+  ..|.++|+.+++..+    +..+.+......|+|||+.+++++...+ ..|.+.|+.+++..+.... ...
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            7643 33  467888888876332    4444443445689999997444443222 2688888887776443321 111


Q ss_pred             eEEEeeccCCCceEEEEEecC---------CeEEEEecCCCC
Q 001224          518 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG  550 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~  550 (1120)
                        ...|  +++|+.|+..+..         ..|.+.|+.++.
T Consensus       323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence              1355  4556666665543         256666665543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.76  E-value=4.2e-08  Score=118.30  Aligned_cols=200  Identities=15%  Similarity=0.219  Sum_probs=152.2

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      +..|-..|.++.=+|...+-++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            4456678899999999999999999999999999998877654443 33 8999999999999  488888899999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEe---cCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEec
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      +. .+.....+.|........|-.    ..+++++   .++.+.+||..-..... .-..|.                  
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~------------------ 2336 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD------------------ 2336 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecC------------------
Confidence            66 677777788888888777754    3566664   36889999875432211 112333                  


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                         +..+++++.|.-..|++|+.+|.|++||++..+.++.++.           +. ...++++|+..|.++||++... 
T Consensus      2337 ---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~- 2400 (2439)
T KOG1064|consen 2337 ---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF- 2400 (2439)
T ss_pred             ---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-
Confidence               3455566666667899999999999999998888776653           33 5678999999999999999766 


Q ss_pred             hhhhhcc
Q 001224          658 RLLRTFE  664 (1120)
Q Consensus       658 ~~~~~~~  664 (1120)
                      ..+..+.
T Consensus      2401 ~ll~~~p 2407 (2439)
T KOG1064|consen 2401 GLLHTFP 2407 (2439)
T ss_pred             chhhcCc
Confidence            5555443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.72  E-value=5.2e-06  Score=85.87  Aligned_cols=185  Identities=12%  Similarity=0.151  Sum_probs=128.7

Q ss_pred             EEEEccCCCEEEEEe------CCcEEEEEcC-CCceeeeecCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001224          829 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------------  885 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------------  885 (1120)
                      .-+||+||++|.+..      .|.|-|||.. +.+.+..+..+.-....+.+.| |++.|+++-                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            468999999999874      2779999998 7788888888877778888999 887776653                


Q ss_pred             --CCCcEEEEEeecceeeEe--e--cccccceEEEEEccCCCEEEEEeCCCC-------EEEEECCCcccccceeeeccC
Q 001224          886 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT  952 (1120)
Q Consensus       886 --~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~-------v~iWd~~~~~~~~~~~~~~~~  952 (1120)
                        .+-++...|..+|+++.+  +  ..|..+|..|++.++|..++..-..|.       |-+++-..  .  ...+....
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~--~~~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A--LRLLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c--ceeccCCh
Confidence              123455667788888877  4  348889999999999877665443332       33333222  1  01111111


Q ss_pred             CC-CCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc
Q 001224          953 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1024 (1120)
Q Consensus       953 ~~-~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~ 1024 (1120)
                      .. ......+-+++++++|.+++++  .-+.+.+||..+++.+....    -..+..++-.+++ ++++.+ .|.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-Ccc
Confidence            00 1112467899999999988874  66899999999999988765    4567788877777 666554 344

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.72  E-value=4.4e-06  Score=83.41  Aligned_cols=216  Identities=15%  Similarity=0.145  Sum_probs=137.0

Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEeecc--eeeEee---cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224          871 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  945 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~  945 (1120)
                      ++.+. +|++||+- .|..|.|-..+..  ..+.+.   +...-.-..++||||+..||.+...|+|+++|+...+...-
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            45666 88888864 5777777654431  222222   22333456799999999999999999999999987443221


Q ss_pred             eeeeccCCCCCCCCCCcEEEEccCC-------cEEEEEeCCeEEEEEcCCc-----eeeeccccCC-CCCCeeEEEECCC
Q 001224          946 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD 1012 (1120)
Q Consensus       946 ~~~~~~~~~~~~~~~i~~~~fspdg-------~~la~~~d~~v~i~d~~~~-----~~~~~~~~~~-h~~~v~~l~~s~d 1012 (1120)
                      .......+  ....+|..+.|-+-.       ++|+...+|.++-|-+..+     +....+.... +...|.++.+.|.
T Consensus        81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            11111111  122467777776532       5666688888887776332     2333333323 3778999999999


Q ss_pred             CcEEEEEEc----C-------CcEEEEEcCCcceeeeeCCCc---------------------ccCCCCCCCCccceEEE
Q 001224         1013 SQLVYACFL----D-------ATVCVFSAANLKLRCRINPSA---------------------YLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus      1013 g~~l~s~~~----D-------g~v~iwd~~~~~~~~~~~~~~---------------------~~~~g~~~~~v~~~~i~ 1060 (1120)
                      -++|++|+.    |       .-+..|.+-++.+-.+.-...                     +...+.....|+  .+.
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS  236 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS  236 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence            998887762    1       136778776554433211000                     000111122244  788


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEecCCCC--CCCCCC
Q 001224         1061 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1093 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~ 1093 (1120)
                      -|| ||..||+.+.+|.|.+|++++-.  +.|...
T Consensus       237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            889 69999999999999999999866  788775

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=2.3e-06  Score=90.39  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=138.2

Q ss_pred             CCcEEEEEcCCCceeeeecCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC
Q 001224          844 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  921 (1120)
Q Consensus       844 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  921 (1120)
                      +|+|..||..+++.+......  .....+..+ + ++..+++++.++.|+.||..+|+.+..... ...+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999988776531  122222233 3 345666678999999999999998877765 22222212 22455


Q ss_pred             EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCC
Q 001224          922 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus       922 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
                      .++.++.|+.+..+|..+|+..........+..    ..........++..++++ .++.|..+|+.+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            666677888999999999876443222111110    011222233336666665 589999999999999777654221


Q ss_pred             C--CC------eeEEEECCCCcEEEEEEcCCc-EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224         1001 S--AP------ITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus      1001 ~--~~------v~~l~~s~dg~~l~s~~~Dg~-v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      .  ..      +..-....++ .++.++.++. +.+ |+.+++.+....     ..+     ..  . ...+ ++..|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence            1  11      1222233345 6666777775 555 999999664222     111     11  1 1233 4678888


Q ss_pred             EeCCCcEEEEecCCCCCCCC
Q 001224         1072 GLSDGGVHVFEPLESEGKWG 1091 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~~~~~~~~~ 1091 (1120)
                      ++.++.|..||+.+|+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999999997774

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.70  E-value=1.2e-05  Score=91.64  Aligned_cols=309  Identities=10%  Similarity=0.051  Sum_probs=170.2

Q ss_pred             EEEEecCCCcEEEEECCCCceeEEeecccc--CeE-----EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224          487 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  559 (1120)
Q Consensus       487 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  559 (1120)
                      .++.++.++.+.-+|..+|+.+........  ...     .+.-.+.-.+..++.++.+|.+..+|..+++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            366777788999999999988876542210  000     0000011122467778889999999999988887665432


Q ss_pred             CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCC---cCeEEEcCCC
Q 001224          560 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG  636 (1120)
Q Consensus       560 ~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~  636 (1120)
                      ....+..+                       .+..++.++.+|.+..+|..+|+.+...........   ..+...  .+
T Consensus       151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~  205 (394)
T PRK11138        151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF  205 (394)
T ss_pred             ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence            21100000                       023577788899999999999999888764321000   011111  23


Q ss_pred             CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccc
Q 001224          637 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  716 (1120)
Q Consensus       637 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (1120)
                      ..++.++.+|.+..+|..++.... .......               .+                               
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W-~~~~~~~---------------~~-------------------------------  238 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIW-QQRISQP---------------TG-------------------------------  238 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhh-eeccccC---------------CC-------------------------------
Confidence            457778888999999988873221 1110000               00                               


Q ss_pred             cCCCcceeeccCCCcc-eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCC
Q 001224          717 LADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  795 (1120)
Q Consensus       717 ~~~~~~l~~~~~d~~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  795 (1120)
                          .        ..+ +++++                  ...++    +  .+..++.++.+|.+..+|..+++     
T Consensus       239 ----~--------~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-----  277 (394)
T PRK11138        239 ----A--------TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-----  277 (394)
T ss_pred             ----c--------cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-----
Confidence                0        000 00000                  00000    0  12335555566666666553221     


Q ss_pred             ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEE
Q 001224          796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAF  873 (1120)
Q Consensus       796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~  873 (1120)
                              .+|....+.              ...+..  ++..+..++ +|.+..+|..+++.+-...... ....+.++
T Consensus       278 --------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v  333 (394)
T PRK11138        278 --------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL  333 (394)
T ss_pred             --------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence                    234332111              111222  344555555 8999999999887765433211 12223333


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE-EEEccCCCEEEEEeCCCCEEEEEC
Q 001224          874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       874 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      .  + .+|+.++.||.|++.|..+|+.+...+-....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       334 ~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 Y--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             E--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            2  3 36677899999999999999988776543333332 222  2457888899998887754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=3.5e-07  Score=90.64  Aligned_cols=225  Identities=15%  Similarity=0.209  Sum_probs=139.7

Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc--eeeeeeeeccccc------------CeEEEEEcCCCCceEEEE
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT  490 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~~------------~V~~v~~s~d~~~~~l~s  490 (1120)
                      ....|+++.|...|.||++|...|.|.+|.-+...  ..+-..++++|..            .|..+.|..++.+-.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999766432  1222234555543            488899988776656777


Q ss_pred             ecCCCcEEEEECCCCce-------------------------------------e-----EEe-eccccCeEEEeeccCC
Q 001224          491 CGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHKE  527 (1120)
Q Consensus       491 ~s~d~~i~vwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~~~~~~~~  527 (1120)
                      .+.|++|++|.+.....                                     +     +.. ..|.-.|.++.+..  
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns--  182 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS--  182 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence            88899999998754310                                     0     001 24555667777643  


Q ss_pred             CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC-CEEEEEeCCCeEEE
Q 001224          528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF  606 (1120)
Q Consensus       528 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i  606 (1120)
                      +...++++ .|-.|.+|+++-......+.         .+-|..-    ..-...++...|+|.. +.+.-.+..|.|++
T Consensus       183 D~et~lSa-DdLrINLWnl~i~D~sFnIV---------DiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEIIDGSFNIV---------DIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             chheeeec-cceeeeeccccccCCceEEE---------eccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            33455554 57889999887543332211         1111100    0000122333344433 34555778899999


Q ss_pred             EECCCCce------eEEE--ecC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccc
Q 001224          607 WDMDSVQL------LTSI--DAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  666 (1120)
Q Consensus       607 wd~~~~~~------~~~~--~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  666 (1120)
                      -|++....      +...  .+.      .-...|..+.|+++|+++++-+. -++++||++....+++++.-|
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            99974321      1111  111      11245788999999999987665 689999998876676666443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.67  E-value=2.2e-05  Score=81.38  Aligned_cols=208  Identities=15%  Similarity=0.103  Sum_probs=140.0

Q ss_pred             CccEEEEcc-CCCEEEEEe-CC-cEEEEEcCCCceeeeecCCCCCe--EEEEEecCCCcEEEEEeC-----CCcEEEEEe
Q 001224          826 AVPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNV  895 (1120)
Q Consensus       826 ~v~~l~~s~-d~~~l~~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~~-----dg~v~vwd~  895 (1120)
                      ....++.+| ....++.+. -| ...+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence            344688888 455555665 44 48999999999888876554432  2578999 8988887643     478999999


Q ss_pred             e-cceeeEeecccccceEEEEEccCCCEEEEEeC------------------CCCEEEEECCCcccccceeeeccCCCCC
Q 001224          896 R-VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       896 ~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      . +.+.+.++..|.-.-..+.+.|||+.|+.+..                  +-.+..-|..+|+......+.. ..|. 
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~-  162 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ-  162 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc-
Confidence            9 67788888877666667889999988776532                  1234445555554432222211 1122 


Q ss_pred             CCCCCcEEEEccCCcEEEEE-eCC-------eEEEEEcCCceeeecccc-----CCCCCCeeEEEECCCCcEEEEEE-cC
Q 001224          957 TAQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACF-LD 1022 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~~la~~-~d~-------~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~-~D 1022 (1120)
                        .+|..+++.++|..++.. ..+       -|.+++...  .+..+..     ..-...|-+|+++++|.++++.+ .-
T Consensus       163 --lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  163 --LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             --cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence              378999999999877763 221       244444333  2222221     12367899999999999886555 55


Q ss_pred             CcEEEEEcCCcceeeeeC
Q 001224         1023 ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1023 g~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +.+.+||..+++++....
T Consensus       239 g~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CEEEEEECCCCCEeeccc
Confidence            789999999999997665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=9.1e-06  Score=91.95  Aligned_cols=208  Identities=8%  Similarity=0.028  Sum_probs=126.9

Q ss_pred             cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeC---CCcEEEEEeecceeeEeecccccceEEEEEccCCC
Q 001224          846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  921 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~---dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  921 (1120)
                      .|.+-|..... .+.+.... .+....|+| |++ .++..+.   +..|+++|+.+++... +....+......|+|||+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCC
Confidence            45665654433 33333233 678899999 776 3654433   3469999998876543 333455566788999998


Q ss_pred             EEEE-EeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----eEEEEEcCCceeeec
Q 001224          922 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ  994 (1120)
Q Consensus       922 ~l~s-~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----~v~i~d~~~~~~~~~  994 (1120)
                      .|+. .+.+  ..|.++|+.+++.   ..+....+      ......|+|||+.|+...+.    .|.+.|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~---~~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL---TQITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE---EEcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            7764 4334  4577778777542   12222211      12455899999988885443    788999988877544


Q ss_pred             cccCCCCCCeeEEEECCCCcEEEEEEcC---------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          995 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~D---------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      ... +.    ....|||||++|+..+..         ..|.+.|+.+++.. .+..      +  .. ..  ...|+| |
T Consensus       317 t~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~------~--~~-~~--~p~~SP-D  378 (419)
T PRK04043        317 VFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA------N--GV-NQ--FPRFSS-D  378 (419)
T ss_pred             ccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC------C--CC-cC--CeEECC-C
Confidence            321 11    124899999998876643         26888899888754 3331      1  01 11  478999 5


Q ss_pred             CCEEEEEeCC-CcEEEEecC
Q 001224         1066 PNEFALGLSD-GGVHVFEPL 1084 (1120)
Q Consensus      1066 ~~~l~s~~~D-g~v~vW~~~ 1084 (1120)
                      |+.|+..+.+ +.-.+|-+.
T Consensus       379 G~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        379 GGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             CCEEEEEEccCCcEEEEEEe
Confidence            7776655443 443344433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.65  E-value=1.7e-05  Score=90.45  Aligned_cols=211  Identities=9%  Similarity=0.005  Sum_probs=120.1

Q ss_pred             CCcEEEEEcCCCceeeeecCCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc----c---ce
Q 001224          844 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI  911 (1120)
Q Consensus       844 dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~----~---~V  911 (1120)
                      ++.|..+|..+|+.+-.+.......     .+-...  ++ .++.++.+|.+..+|..+|+.+.......    .   ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence            5666666666666655543221100     111122  23 45567788999999988887665432110    0   01


Q ss_pred             EEEEEcc--CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001224          912 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  989 (1120)
Q Consensus       912 ~~l~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~  989 (1120)
                      ..+.-+|  .+..++.++.+|.+..+|..+++.......    +      ....+.. .++..++...++.+..+|..+|
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            1111122  245677777899999999998865332211    1      1111222 2444445568899999999998


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
                      +.+-...... .....+...  .+.+|+.++.||.|++.|..+|+.+.+.+.    ..+  .  +.. +....   +..|
T Consensus       315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l  379 (394)
T PRK11138        315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL  379 (394)
T ss_pred             cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence            7654322111 111222222  256677889999999999999999887652    111  0  110 11121   3588


Q ss_pred             EEEeCCCcEEEEec
Q 001224         1070 ALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1070 ~s~~~Dg~v~vW~~ 1083 (1120)
                      +.++.||.|+.++.
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            88999999998875

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.64  E-value=0.0028  Score=74.09  Aligned_cols=555  Identities=10%  Similarity=0.083  Sum_probs=275.7

Q ss_pred             EcCCCCeEEEEECCCeEEEEEcc-CCceeee---eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-
Q 001224          434 WSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-  508 (1120)
Q Consensus       434 ~spdg~~las~~~dg~v~iwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-  508 (1120)
                      ...+|.+.+.|..+|.+...-+. +++....   ...+-|...-..|+..-++|-   +..||.-|.=.+-.+.+..-. 
T Consensus       265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~---lFvGS~~gdSqLi~L~~e~d~g  341 (1096)
T KOG1897|consen  265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGV---LFVGSRFGDSQLIKLNTEPDVG  341 (1096)
T ss_pred             ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCce---EEEeccCCceeeEEccccCCCC
Confidence            45577788888888877766554 3332221   123345556677788887774   888887776566555432221 


Q ss_pred             ------EEeeccccCeEEEeeccCC--CceEEEEEe---cCCeEEEEecCCCCCc---eeeeCCCCceeEEE--------
Q 001224          509 ------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNLGSR---VDYEAPGRWCTTMA--------  566 (1120)
Q Consensus       509 ------~~~~~h~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~--------  566 (1120)
                            .++. .-++|..++.....  ....+++++   .||++|+..-.-+-..   ..+.+ -..++.+.        
T Consensus       342 sy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d  419 (1096)
T KOG1897|consen  342 SYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD  419 (1096)
T ss_pred             chhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence                  2333 34678887765433  233555554   3788887632211000   00011 00111111        


Q ss_pred             ---------------EcCC--------------------------------CCeEEecc-------cccceeEEEEcCCC
Q 001224          567 ---------------YSAD--------------------------------GTRTYQGF-------RKRSLGVVQFDTTK  592 (1120)
Q Consensus       567 ---------------~s~~--------------------------------g~~~~~~~-------~~~~i~~~~~~~~~  592 (1120)
                                     .+++                                +-+++.+.       ....+.+...+.+.
T Consensus       420 ~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~  499 (1096)
T KOG1897|consen  420 NYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANA  499 (1096)
T ss_pred             cEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecc
Confidence                           1111                                11111111       00112222223333


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEccCcchhhhh--cc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRT--FE  664 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~--~~  664 (1120)
                      ..++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.-..........  +.
T Consensus       500 sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~  578 (1096)
T KOG1897|consen  500 SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS  578 (1096)
T ss_pred             eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC
Confidence            455556655666655655444 222222222346888989873  2    27888877766655433222111111  11


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc--CCC
Q 001224          665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE--LSE  742 (1120)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~  742 (1120)
                      +...                                 ++...+.+      +..+..+|.++..||.+.-|-+..  +..
T Consensus       579 ~~~i---------------------------------PRSIl~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  579 GEII---------------------------------PRSILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             CCcc---------------------------------chheeeEE------eeccceEEEEEcCCceEEEEEEEcccceE
Confidence            0000                                 00011111      112367899999999887665543  222


Q ss_pred             CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCC
Q 001224          743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  822 (1120)
Q Consensus       743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~  822 (1120)
                      ....+.     .-...++.--.|+..++.-+.+.+|.-..+|..+                       +.++...+.- .
T Consensus       620 sd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~-k  670 (1096)
T KOG1897|consen  620 SDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL-K  670 (1096)
T ss_pred             cccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-H
Confidence            111110     1133455555666655555555555444444321                       1111100000 0


Q ss_pred             CCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeC-----------C--
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D--  887 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~-----------d--  887 (1120)
                      .-..+....-+.-...++++..+.+++.-++.-+.  ++++. -......+++.+ ....+++.+.           .  
T Consensus       671 ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~  748 (1096)
T KOG1897|consen  671 EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYE  748 (1096)
T ss_pred             HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcce
Confidence            00111111111223467777777777777664332  23433 223455666665 3444443331           1  


Q ss_pred             -CcEEEEEeecceeeEeecc--c--ccceEEEEEccC-CCEEEEEeC----------CCCEEEEECCCcccccceeeecc
Q 001224          888 -SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIP  951 (1120)
Q Consensus       888 -g~v~vwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~v~iWd~~~~~~~~~~~~~~~  951 (1120)
                       ..++++|-++.+.+...+-  -  -..|.++.|..| +.+++.|..          .|.|.|+.+......+...-...
T Consensus       749 ~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v  828 (1096)
T KOG1897|consen  749 VSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV  828 (1096)
T ss_pred             EEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee
Confidence             1366677666554432211  1  123555568877 677777753          36677777766222111111111


Q ss_pred             CCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          952 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       952 ~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      .      +.+.++.. -+|+ ++++-...|++|++.+.+.++.-.  .|..++..+...-.|..+++|..=+.+.+-...
T Consensus       829 ~------Gav~aL~~-fngk-llA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  829 K------GAVYALVE-FNGK-LLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             c------cceeehhh-hCCe-EEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence            1      12222221 2444 445567799999999886665543  568889999999999999999877776665554


Q ss_pred             Ccc--eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1032 NLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1032 ~~~--~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      ..+  ..-.-.  .+.|       -+.+++.+-.  ++.++.+..+|.+++-...+
T Consensus       899 ~~eg~f~evAr--D~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  899 GDEGNFEEVAR--DYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             ccCCceEEeeh--hhCc-------cceeeEEEec--CceEEeecccccEEEEEecC
Confidence            433  442211  2222       2333666663  56777788899999887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.64  E-value=3.1e-07  Score=90.97  Aligned_cols=159  Identities=14%  Similarity=0.250  Sum_probs=108.6

Q ss_pred             CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCc---eeeeecCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          822 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~---~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                      .|..-+.++.|..|...++++.|=.|.+|++.-..   .+..+++|.     .-|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            37778999999999999999999999999986322   123344443     3488999999878888889999999999


Q ss_pred             Eeecceee--------Ee--------ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC--
Q 001224          894 NVRVDEVK--------SK--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--  955 (1120)
Q Consensus       894 d~~~~~~~--------~~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~--  955 (1120)
                      |++...+.        ..        +.+-.+.|..+.|+++|+++++-+. -+|+|||+...+..    +.+..-|.  
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p----ikTi~~h~~l  324 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP----IKTIPMHCDL  324 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC----ceeechHHHH
Confidence            99742211        01        1223357888999999999987654 56999999875432    22221110  


Q ss_pred             ----------CCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001224          956 ----------PTAQSDTRVQFHQDQIHFLVV-HETQLAIFE  985 (1120)
Q Consensus       956 ----------~~~~~i~~~~fspdg~~la~~-~d~~v~i~d  985 (1120)
                                .....-..+.||.|.+.+.+| .....-+|-
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence                      000112457888888887774 444454554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.63  E-value=5.9e-06  Score=80.72  Aligned_cols=232  Identities=11%  Similarity=0.022  Sum_probs=151.4

Q ss_pred             CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224          635 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  714 (1120)
Q Consensus       635 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1120)
                      ...+|+.|+..|.+.+|...+.....+....+...+..                                        .-
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~----------------------------------------~~  122 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL----------------------------------------VK  122 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhh----------------------------------------hh
Confidence            45689999999999999988763333333222221110                                        00


Q ss_pred             cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc--cEEEEEEcCCCceEEEeccCceEEEeeecccccC
Q 001224          715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT--KISRLIFTNSGNAILALASNAIHLLWKWQRTERN  792 (1120)
Q Consensus       715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~  792 (1120)
                      ..-.....+..++.|.++++.++.........         |..  .+.++.+++|++++++.+....|..|.+..+...
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey  193 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY  193 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce
Confidence            01112234567778888888888754332222         222  3788999999999999999999999987543211


Q ss_pred             CCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceee-----eecCCCC
Q 001224          793 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPP  866 (1120)
Q Consensus       793 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~-----~~~~~~~  866 (1120)
                                          ......  ....+.-.+..|+.....+|++. ||++.|||++......     +-..|.+
T Consensus       194 --------------------~~~~~~--a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG  251 (344)
T KOG4532|consen  194 --------------------IENIYE--APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG  251 (344)
T ss_pred             --------------------eeeeEe--cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence                                111001  11344456788999999999999 9999999998644322     2345788


Q ss_pred             CeEEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeEeec-------cccc-ceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          867 AATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHSK-RITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       867 ~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      .+..+.|++ .|  .+|...-.-+.+.|-|++++.-.+.+.       .|.. .|..-.|+.++..+.+.+++. +.-|+
T Consensus       252 a~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~n  329 (344)
T KOG4532|consen  252 AFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYN  329 (344)
T ss_pred             ceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheee
Confidence            999999997 44  355555556789999999876544432       2333 388888988887777666554 56677


Q ss_pred             CCC
Q 001224          937 SDG  939 (1120)
Q Consensus       937 ~~~  939 (1120)
                      +..
T Consensus       330 i~s  332 (344)
T KOG4532|consen  330 ILS  332 (344)
T ss_pred             ccc
Confidence            665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=4.8e-07  Score=87.77  Aligned_cols=210  Identities=12%  Similarity=0.157  Sum_probs=127.8

Q ss_pred             ceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC
Q 001224          367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  446 (1120)
Q Consensus       367 v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  446 (1120)
                      |+.+.|+.+-  .|+++..++.+......++.....     |+-.  ....+.+.+..|.++=.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt--~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERD--DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcc--cCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence            6666666654  588888888888777665544431     1111  111122234456655555555667889999999


Q ss_pred             CCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEec-----CCCcEEEEECCCCceeEEeeccccCeEE
Q 001224          447 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS  520 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~  520 (1120)
                      ||.+.+.+.+.-..+.  .... .|.+ -.+.+....+.  ++.+++     .-+..+.|+++..+.+..-..-...|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622111  1111 1211 11222233344  233322     1234456665533322211112234889


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCce-eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      +|-+|... +.+++|+.||.+-+||++...... .+..|...+..+.|.|...                    ..|++++
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s  243 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS  243 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence            99887665 688889999999999999864333 4566777788888877654                    5799999


Q ss_pred             CCCeEEEEECCC
Q 001224          600 DDFSIKFWDMDS  611 (1120)
Q Consensus       600 ~dg~i~iwd~~~  611 (1120)
                      +||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999864

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.63  E-value=3.5e-07  Score=94.73  Aligned_cols=167  Identities=20%  Similarity=0.281  Sum_probs=112.7

Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCce-EEEEecCCCcEEEEECCCC
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQL-CVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~-~l~s~s~d~~i~vwd~~~~  505 (1120)
                      .+..+..++++++||++..+....++++..... .+..... .-...-+++.|..+.... +...+++...+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            445566778888888888877777776654432 1111111 112233444454444431 3334556677888887765


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      .+. .+-||-..+..+++++++  ++|+++..|..|++-.....-.+..+ -+|...|..++..++.             
T Consensus       143 ~~~-~~lGhvSml~dVavS~D~--~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-------------  206 (390)
T KOG3914|consen  143 RCE-PILGHVSMLLDVAVSPDD--QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-------------  206 (390)
T ss_pred             Ccc-hhhhhhhhhheeeecCCC--CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-------------
Confidence            543 455799999999986544  89999999999998877654444443 3477777777776654             


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                               .|+++|.|++|++||+.+|+.+.++..
T Consensus       207 ---------~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  207 ---------LLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             ---------eeeecCCCCcEEEEecccCCcccccch
Confidence                     389999999999999999998877653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=0.00026  Score=69.32  Aligned_cols=146  Identities=9%  Similarity=-0.010  Sum_probs=96.0

Q ss_pred             EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224          478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  557 (1120)
Q Consensus       478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  557 (1120)
                      ...+|.+. +++.|+..+.+.--|.++|+.+..-. -...|.+-+..   -|++++.|+..|.+.+.+..++...+.+..
T Consensus        17 VV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   17 VVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             EEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence            34456565 78889999999999999998875432 22344433322   225799999999999999998877665543


Q ss_pred             CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                      .+.--                     .....++++..+..++.|+..+..|..+..++...+..+.  ...+-++.|-..
T Consensus        92 ~~~vk---------------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~  148 (354)
T KOG4649|consen   92 LETVK---------------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDG  148 (354)
T ss_pred             hhhhc---------------------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCc
Confidence            22100                     1123455667899999999999999999999988775554  234455666333


Q ss_pred             EEEEEECCCcEEEE
Q 001224          638 LLAVSTNDNGIKIL  651 (1120)
Q Consensus       638 ~l~~~~~dg~i~iw  651 (1120)
                      .|..+...|.+.--
T Consensus       149 sly~a~t~G~vlav  162 (354)
T KOG4649|consen  149 SLYAAITAGAVLAV  162 (354)
T ss_pred             eEEEEeccceEEEE
Confidence            34444444554433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.60  E-value=0.00016  Score=76.51  Aligned_cols=226  Identities=19%  Similarity=0.212  Sum_probs=141.4

Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc-CCCCeEEEEEC
Q 001224          368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS  446 (1120)
Q Consensus       368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~  446 (1120)
                      .+++|.+....|+++.-..+.|..|+..+++....                    ...  ....+++. ++|+ |+.+..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~-l~v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGR-LYVADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSE-EEEEET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCE-EEEEEc
Confidence            36789985555788888899999999998875431                    111  26777777 5654 555555


Q ss_pred             CCeEEEEEccCCceeeeeeeec--c-cccCeEEEEEcCCCCceEEEEecCC--------CcEEEEECCCCceeEEeeccc
Q 001224          447 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       447 dg~v~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~s~d--------~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      ++ +.++|..+++.. .+....  . .....+.+++.++|.  +.++....        |.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            55 555699988643 333332  2 345789999999999  56665433        457777766 55443333 34


Q ss_pred             cCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc--cceeEEEEcCCC
Q 001224          516 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK  592 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~--~~i~~~~~~~~~  592 (1120)
                      .....++|+++  ++.| ++-+..+.|..+++..........                +.+.....  +....++++.+|
T Consensus       134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred             ccccceEECCc--chheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence            55678898654  4555 466678889888886544311100                00000000  124456677777


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEE
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST  643 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  643 (1120)
                      +..++....+.|.+++.+ |+.+..+....  ..+++++|. ++.+.|++.+
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence            777777789999999987 88888887653  368999994 6767666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.59  E-value=4.4e-05  Score=80.79  Aligned_cols=220  Identities=14%  Similarity=0.081  Sum_probs=138.1

Q ss_pred             cEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224          828 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       828 ~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .+++|.+ ++.++++.. .+.|..|+..++.... +...  ....+++...+++++++ .. +.+.++|..+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence            3577887 555555544 7889999998866533 2212  27888888326666554 43 456666988875443332


Q ss_pred             c-----cccceEEEEEccCCCEEEEEeCC--------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          906 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       906 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      .     .....+.+++.++|++.++....        |.|..++.. ++.  .......       .....++|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcchh
Confidence            2     34568899999999988776544        345555555 221  1122111       13478999999998


Q ss_pred             EEEE--eCCeEEEEEcCCcee----eecc-ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCccc
Q 001224          973 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1045 (1120)
Q Consensus       973 la~~--~d~~v~i~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~ 1045 (1120)
                      |.++  ..+.|..|++.....    ...+ ......+..-.+++..+|++.++....+.|.+++.+ |+++..+.    +
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~  222 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L  222 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence            8764  667899998863221    1112 111212358899999999988888888999999987 99988887    4


Q ss_pred             CCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224         1046 PAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus      1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      |.      -.+..++|...|.+.|+..+
T Consensus       223 p~------~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  223 PV------PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SS------SSEEEEEEESTTSSEEEEEE
T ss_pred             CC------CCEEEEEEECCCCCEEEEEe
Confidence            41      13558999643555555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.58  E-value=3.7e-07  Score=100.79  Aligned_cols=242  Identities=13%  Similarity=0.201  Sum_probs=152.7

Q ss_pred             ccccccCCCCcCCCCcCCCCCCCCCcceee--eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceee
Q 001224          330 LPVSFTGHSHSHSHSQAFSTPEDLPKTVTR--TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV  407 (1120)
Q Consensus       330 w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~  407 (1120)
                      |.|+.++..      ..+|.......+.+.  +-+|+..|+.+-|+|....++|+.+.|..|..||+.+.....    -.
T Consensus        84 wiVsts~qk------aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----ys  153 (1081)
T KOG0309|consen   84 WIVSTSNQK------AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----YS  153 (1081)
T ss_pred             eEEecCcch------hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----ee
Confidence            666666544      233333333333333  335899999999999998899999999999999998754322    11


Q ss_pred             eccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCce
Q 001224          408 WDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL  486 (1120)
Q Consensus       408 ~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~  486 (1120)
                      |              ..-...-..|+|+- ++..|| .+....|.+||...|....  ..+++|...|+.++|+.--.. 
T Consensus       154 ~--------------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~~s-  215 (1081)
T KOG0309|consen  154 T--------------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFKYS-  215 (1081)
T ss_pred             e--------------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcce--EEecccceeeehHHHhhhhhh-
Confidence            1              11223556788987 454444 4556779999999776432  367889999999999765332 


Q ss_pred             EEEEecCCCcEEEEECCCCce--eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC----------CCCcee
Q 001224          487 CVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----------LGSRVD  554 (1120)
Q Consensus       487 ~l~s~s~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~  554 (1120)
                      .+.+++.|++|+.||......  .++.. ...+|+--++.|-.+|.++.---.+..+.+++.++          ..++.+
T Consensus       216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~  294 (1081)
T KOG0309|consen  216 EIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT  294 (1081)
T ss_pred             hhcccCCCCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence            589999999999999764322  22222 34566666666666654443333333444443332          234556


Q ss_pred             eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001224          555 YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS  611 (1120)
Q Consensus       555 ~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  611 (1120)
                      +.+|...|....|-..+..           .-.+....-.|++-+.|..+++|-+.+
T Consensus       295 F~GH~D~V~eFlWR~r~e~-----------~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  295 FVGHDDVVLEFLWRKRKEC-----------DGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ecCcchHHHHHhhhhcccc-----------cCCCCccceeEEEeecCCceEeeeccH
Confidence            6777666655555333220           011122223689999999999998754

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=3.8e-06  Score=87.93  Aligned_cols=213  Identities=12%  Similarity=0.088  Sum_probs=142.2

Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC-CCcEEEEECC
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDAT  503 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~  503 (1120)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-.-+.-...+..|.+.|.+++.+-++.  ++.|.+. |+.++++|+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            67777766554 467999999999999997654222333345778999999999999998  7888777 9999999998


Q ss_pred             CCceeEEeec--cccCeEEEeeccCC-Cc--eEEEEEecCCeEEEEecCCCCCce--eeeCCCCceeEEEEcCCCCeEEe
Q 001224          504 NGAKQYIFEG--HEAPVYSVCPHHKE-NI--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       504 ~~~~~~~~~~--h~~~v~~~~~~~~~-~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      +-..+..++-  -.+.+   +|...+ +-  ..-++.-.++.+.++|-....+..  .-..|..                
T Consensus        85 n~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s----------------  145 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS----------------  145 (558)
T ss_pred             ccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC----------------
Confidence            7665533321  12222   222222 11  122333457889999876544322  2223334                


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeEEEecC-------CCCCCcCeEEEcCCCCEEEEEE
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSIDAD-------GGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                           ++.++.+.+.+..+++....|.|.-|....      .+....++.+       .......++.|+|+|..+.+-.
T Consensus       146 -----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~  220 (558)
T KOG0882|consen  146 -----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN  220 (558)
T ss_pred             -----ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence                 444555555556788888899999998862      2222222211       1223567899999999999999


Q ss_pred             CCCcEEEEEccCcchhhhhccc
Q 001224          644 NDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       644 ~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                      .|..|++++..++ ++++.+..
T Consensus       221 ~DrkVR~F~~KtG-klvqeiDE  241 (558)
T KOG0882|consen  221 PDRKVRGFVFKTG-KLVQEIDE  241 (558)
T ss_pred             cccEEEEEEeccc-hhhhhhhc
Confidence            9999999999998 66666543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=9.3e-06  Score=91.33  Aligned_cols=115  Identities=18%  Similarity=0.296  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCeEEEEEC----CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          430 NRVIWSPDGSLFGVAYS----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       430 ~~l~~spdg~~las~~~----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      +-.+|+|...++|+++-    .|.|.||- ++|+.-+ ..+..   -.+++++|.|..-  +|+.|-.-|.+.+|...+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P---~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYP---VHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-ccccc---eehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence            34578888888888763    47888884 3443222 11222   2356799999866  7888888999999998887


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  553 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  553 (1120)
                      +.-.....|..+|..+.|++  +|..++++..-|.+.+|..+..+...
T Consensus        92 e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   92 ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccc
Confidence            77777778999999999854  55799999999999999887544433

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.48  E-value=6e-07  Score=85.70  Aligned_cols=134  Identities=23%  Similarity=0.232  Sum_probs=98.7

Q ss_pred             HHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001224           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ  117 (1120)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~  117 (1120)
                      ...++++|++|+++.|++.+......-....+ .+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++.+..
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~   83 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            57899999999999999999987322111113 38999999999999999999999999999997665445678888888


Q ss_pred             Hhccccccc--hhhhccCCCchHHHHHHHHHHHhhcccCCCcccccCCCCCc-chHHHHHHHHHHHHH
Q 001224          118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ  182 (1120)
Q Consensus       118 ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~~~~~~q  182 (1120)
                      +|.......  ...+..+-+ ...|.++.+.+.+.+-...-         +| ...|+.++++....+
T Consensus        84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            888776654  223333322 36789999988887655332         33 457888888765543

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=0.00042  Score=67.92  Aligned_cols=146  Identities=11%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      +..-+|.+.+++.|++.+.+.--|.++|+..-+.-                 +   ..+|-+-+.- -|++++.|...|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence            34556777789999999999999999998765311                 1   1233332222 4788999999999


Q ss_pred             EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224          450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI  529 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  529 (1120)
                      +++-+.++|.+......+..  -.+ .....+++.  ++..|+.|++.+.-|.++..++...+--.+...+-++.+. ++
T Consensus        75 lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~~  148 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-DG  148 (354)
T ss_pred             EEEEEecchhheeeeeehhh--hcc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-Cc
Confidence            99999999976654433221  111 233456777  7999999999999999999999887643333223333332 22


Q ss_pred             eEEEEEecCCeEEE
Q 001224          530 QFIFSTALDGKIKA  543 (1120)
Q Consensus       530 ~~l~s~~~dg~i~i  543 (1120)
                       .|+.+...|.+.-
T Consensus       149 -sly~a~t~G~vla  161 (354)
T KOG4649|consen  149 -SLYAAITAGAVLA  161 (354)
T ss_pred             -eEEEEeccceEEE
Confidence             3444444555543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=6e-07  Score=90.64  Aligned_cols=165  Identities=13%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeE
Q 001224          371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV  450 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v  450 (1120)
                      +||-.-.-.-++.+.+-.|.+-|+++|-...                    +. ..+.|.++.|...+.++..|..+|.|
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI  276 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI  276 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence            5653322112334456778888998876543                    22 56689999999999999999999999


Q ss_pred             EEEEccCCce--eeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCce---eEEeeccccCeEEEeec
Q 001224          451 QIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       451 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~  524 (1120)
                      ...|++.+.+  ..+...+ -|...|+++.... +++  +|++.+.+|.|++||.+.-++   +.++.||-+.-.-+-++
T Consensus       277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~  353 (425)
T KOG2695|consen  277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH  353 (425)
T ss_pred             EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence            9999986521  1111122 4889999998877 555  799999999999999987776   89999998776666666


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  559 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  559 (1120)
                      .++....+++++.|...|+|.++.+....++..+.
T Consensus       354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            66666789999999999999999877766655443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.47  E-value=3e-05  Score=81.84  Aligned_cols=227  Identities=15%  Similarity=0.094  Sum_probs=136.2

Q ss_pred             CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeee
Q 001224          386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL  465 (1120)
Q Consensus       386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~  465 (1120)
                      +|+|..||..+|+.+-+..+.                .+.. ...+. ..+++.++++++.++.+..||..+|+.+... 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-   62 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF-   62 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred             CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence            689999999999988653221                0111 11211 3346778888899999999999999876533 


Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-ecccc---CeEEEeeccCCCceEEEEEecCCeE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI  541 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i  541 (1120)
                      .+.+.....   ....++.   ++.++.++.|+.+|..+|+.+... .....   ..........  +..++.+..++.|
T Consensus        63 ~~~~~~~~~---~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l  134 (238)
T PF13360_consen   63 DLPGPISGA---PVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL  134 (238)
T ss_dssp             ECSSCGGSG---EEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred             eccccccce---eeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence            222221111   2223333   566667889999999999999884 32211   1111111112  3578888889999


Q ss_pred             EEEecCCCCCceeeeCCCCce-eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224          542 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       542 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      ..+|..+++.+.......... ..+....            ....-....++ .++.++.++.+..+|+.+++.+.... 
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-  200 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-  200 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence            999999988777665533211 0000000            01111111123 57777777754444999998665333 


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                      ..   .+.. ....++..|++++.++.+..||..+++
T Consensus       201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            21   1222 245678888888899999999999984

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.47  E-value=1.8e-06  Score=83.98  Aligned_cols=198  Identities=16%  Similarity=0.139  Sum_probs=119.8

Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEEeecceee------------EeecccccceEEEEEccCCCEEEEEeCCCCEEEE
Q 001224          868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  935 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iW  935 (1120)
                      ++.+.++.  ...|+++..++.+..+....+.+.            +.+..|+++-.+-+.+--+..++++..||.+.+.
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~  116 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF  116 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence            66666763  456777777777666655444333            2233343333333333346789999999999999


Q ss_pred             ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEE
Q 001224          936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPITHATF 1009 (1120)
Q Consensus       936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~ 1009 (1120)
                      +.+.-....   .+....+.    .-.+.++-..++.+.++      .-+..+.|+++..+....-.  .....|++++-
T Consensus       117 s~~~~~~~~---~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~  187 (319)
T KOG4714|consen  117 STDKDLALM---SRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS  187 (319)
T ss_pred             echHHHhhh---hhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence            987621111   11111111    11233333455555553      23455666665433221111  11345999998


Q ss_pred             CCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1010 SCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1010 s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .|..+ .+++|+.||.+-+||.........+     +..+  ...++  .+.|+|.++..|+++++||.+..||-++
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-----l~ah--k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-----LKAH--KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccccchHHH-----HHHh--hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence            88655 5678889999999999887444322     2211  33366  7999999999999999999999999774

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.4e-06  Score=91.00  Aligned_cols=213  Identities=13%  Similarity=0.088  Sum_probs=153.6

Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCC
Q 001224          864 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  939 (1120)
Q Consensus       864 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~  939 (1120)
                      |...|+.+..+.  .+++.+++-||.++.|.-..   -+.+..+..|.+.|.+++.+.|+.++.|++. |..++++|++.
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            677788877664  67999999999999997543   2455667889999999999999999999877 99999999988


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEccCC--cEEEEE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224          940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg--~~la~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
                      -.......+..+++       --.+..++..  ..++++  .++.+.++|-..+.|.....-.-|..+|..+.+.+-+..
T Consensus        86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            54432222222222       1122223321  244553  778999999887776555555678999999999999999


Q ss_pred             EEEEEcCCcEEEEEcCC------cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1016 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1016 l~s~~~Dg~v~iwd~~~------~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +++....|.|.-|....      .++...++...++-. --...-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~-f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG-FPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhc-ccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            99998899999999873      222222222222211 111223466899999 68999999999999999999988

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.45  E-value=5.5e-05  Score=79.31  Aligned_cols=207  Identities=17%  Similarity=0.174  Sum_probs=130.8

Q ss_pred             ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee-cceeeE
Q 001224          827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS  902 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~  902 (1120)
                      ...++++.||+++.+..   .-.|.|.|+...+.+..+...  .+..+-  |...+-+.+-|.||.+.-..+. .|+...
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            44578999999999876   477999999999988877632  222222  3234457778889999988887 354432


Q ss_pred             e----ecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC----CCCCCCCCcEEEEccCCcEE
Q 001224          903 K----LKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       903 ~----l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~fspdg~~l  973 (1120)
                      +    |..-.+++. .-+++.++..++-.+.+|.|+--|+................    ..-.++.-.-+++++....|
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence            2    222222222 33445555566667888888888877654333222222110    00011345668888876665


Q ss_pred             EE----EeCC-------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          974 LV----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       974 a~----~~d~-------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+    +.++       .|.+||+.+++.+..+..   ..++.+|..|.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            55    2222       599999999999998875   34688999999888 555444 57899999999999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.42  E-value=6.7e-07  Score=62.99  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=37.2

Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      |+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=1.4e-06  Score=88.12  Aligned_cols=151  Identities=14%  Similarity=0.157  Sum_probs=111.2

Q ss_pred             EEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224          882 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  961 (1120)
Q Consensus       882 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i  961 (1120)
                      ++.+.+..|-+-|+.+|- ...|. ..+.|.++.|...++++..|+..|.|...|++........+.+.+-..    .+|
T Consensus       228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~----Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD----SSV  301 (425)
T ss_pred             ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC----cch
Confidence            344556778888888764 24444 567799999999899999999999999999988633333333222211    357


Q ss_pred             cEEEEcc-CCcEEEE-EeCCeEEEEEcCCcee---eeccccCCCC--CCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          962 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESS--APITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       962 ~~~~fsp-dg~~la~-~~d~~v~i~d~~~~~~---~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                      +++..-. ++.+|.+ +.+|+|++||.+.-++   +.++.  +|-  ..-.-+.+.+....+++++.|...|||.+..|.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence            7776655 5556655 6999999999988777   66665  553  333344556677889999999999999999999


Q ss_pred             eeeeeC
Q 001224         1035 LRCRIN 1040 (1120)
Q Consensus      1035 ~~~~~~ 1040 (1120)
                      +++.++
T Consensus       380 Ll~tip  385 (425)
T KOG2695|consen  380 LLCTIP  385 (425)
T ss_pred             eeeccC
Confidence            999988

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.39  E-value=5.1e-05  Score=86.01  Aligned_cols=185  Identities=12%  Similarity=0.051  Sum_probs=116.3

Q ss_pred             EccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeec
Q 001224          832 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       832 ~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~  905 (1120)
                      +++||+.+...+  .+.+.+.|.++.+...++.-. +....++++| +++++++.+.+.    ++..-+......+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            456777665444  577889999987777666532 3456789999 888887775321    22222221111111111


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc-ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA  982 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~  982 (1120)
                      -.  .+  -++.++|++...  .++.|.+.|..+..... ......+-+.     ....+.+||||++++++  .+..|.
T Consensus       278 i~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        278 IA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             hH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence            00  00  133457877665  36779999988711001 1122223332     45889999999999994  678999


Q ss_pred             EEEcCCcee------------eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          983 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       983 i~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      |+|+.+.+.            +.+...   .......+|.++|....+-..|..|..|++.+
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999988653            333322   33456779999999888888999999999987

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.38  E-value=0.0013  Score=78.45  Aligned_cols=275  Identities=14%  Similarity=0.127  Sum_probs=150.9

Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                      ..|..+.|..+.+.++.+..+|.|.+-|..+......-...   ..|.+++||||+.+++..+..+++.+-.-.-..-..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            35667777777788999999999999988876543332222   358999999999999999998888765421110001


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      +.+  +.+.-.                                                ....+..+....-.-+....+
T Consensus       146 ~~L--~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g  175 (1265)
T KOG1920|consen  146 KPL--DADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG  175 (1265)
T ss_pred             ccc--cccccc------------------------------------------------ccccceecccccceeeecchh
Confidence            111  000000                                                000111111111111111100


Q ss_pred             CCCccceee--c-cCCccccccEEEEEEcCCCceEEEec-----cCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          741 SEPNQCRSL--R-LPENLRATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       741 ~~~~~~~~~--~-~~~~~~~~~i~~l~~s~~g~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                      .........  . .+.......-..+.|--||.++++..     ....++|||-+                       |.
T Consensus       176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~  232 (1265)
T KOG1920|consen  176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA  232 (1265)
T ss_pred             hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence            000000000  0 00000122334689999999887732     22678888753                       11


Q ss_pred             cccccCCCCCCCCCccEEEEccCCCEEEEEe----CCcEEEEEcCC---CceeeeecCCCCCeEEEEEecCCCcEEEE--
Q 001224          813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI--  883 (1120)
Q Consensus       813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~las--  883 (1120)
                      +-..   .......-.+++|-|.|..+++-.    |+.|.+|.-+.   +.....++....++..++|+. ++.+||+  
T Consensus       233 Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~  308 (1265)
T KOG1920|consen  233 LNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT  308 (1265)
T ss_pred             hhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence            1000   001233345799999999999853    56799998653   222223333445599999999 8999998  


Q ss_pred             -EeCCCcEEEEEeecce--eeEeecccccceEEEEEccCC-CEEEEEeCCCCEEEEEC
Q 001224          884 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       884 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~  937 (1120)
                       ......|++|-+.+..  +...+.......  +.|+|-. ..|..-..+|...+++.
T Consensus       309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence             4455569999987632  334444333333  7888743 23333336666666654

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=1.5e-06  Score=89.05  Aligned_cols=121  Identities=13%  Similarity=0.167  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCc--------cHHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHH
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEI   76 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i   76 (1120)
                      +.-+-|+|..||..+||.++|..|-++|.+.-        ++..++++|++|+...|+.....=...-..+-+. +-|.+
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~-lEf~l  193 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESS-LEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccch-hhhHH
Confidence            34578999999999999999999999999862        3778899999999999987766541111112223 78999


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccc
Q 001224           77 RKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE  126 (1120)
Q Consensus        77 ~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~  126 (1120)
                      +.|.|+||+..+++.+|+.+.++++.|....+.+.++....+|.+.....
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~  243 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTS  243 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccC
Confidence            99999999999999999999999999998878899999999998865543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=6.8e-07  Score=100.58  Aligned_cols=198  Identities=16%  Similarity=0.195  Sum_probs=143.3

Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC--CEE
Q 001224          856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC  933 (1120)
Q Consensus       856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~  933 (1120)
                      +..+++..|....+|++|+- +.+.|++|+-.|.|++|++.+|.......+|.++|+.+.-+.||..+.+.+.-.  ...
T Consensus      1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            44456777888899999999 889999999999999999999999999999999999999999998877655433  467


Q ss_pred             EEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccC--CCCCCeeEEEEC
Q 001224          934 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1010 (1120)
Q Consensus       934 iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s 1010 (1120)
                      +|++..--    .....+       ..-.++.|+.....-+.| ......+||+.++....++..+  +....=.+..||
T Consensus      1171 LW~~~s~~----~~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTG----GPRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             Hhcccccc----Cccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence            99987621    111112       234678888875554554 4567899999999887774422  112333678999


Q ss_pred             CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1011 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1011 ~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      |+.++++   .||  .+||+...+.++++..-..-.           .=.|+|+ |..++.-+     .|||+.+-.
T Consensus      1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             CCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence            9999887   456  479999888887765211111           2347884 67777665     578876654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=1.1e-05  Score=91.12  Aligned_cols=189  Identities=15%  Similarity=0.158  Sum_probs=133.0

Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc
Q 001224          866 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  945 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~  945 (1120)
                      ..+.|++++   +++++.|+.+|.|++++... .. .+...|+..      ..+|.+++||+.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            457778875   47999999999999999763 33 444446554      56799999999999999999888554221


Q ss_pred             eeeeccCCCCCCCCCCcEEEEccC-----CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE
Q 001224          946 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus       946 ~~~~~~~~~~~~~~~i~~~~fspd-----g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
                      .     .-+    .++.+++++||     .+++++|+...+.++.-.-..-..........++|.++.|  .|.++|-++
T Consensus       109 ~-----df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 Y-----DFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             E-----ecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            1     111    36899999998     5677776555477776432222222222344889999999  588888887


Q ss_pred             cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1021 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1021 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      .+| |+|||+.+++.+..+++..-.+    ....++-.+.|.+  ...|+.|- .-+|+|..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence            555 9999999999999888554222    2234455788886  46788776 4468888887

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.29  E-value=0.00014  Score=86.24  Aligned_cols=275  Identities=9%  Similarity=0.129  Sum_probs=155.8

Q ss_pred             cccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224          757 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  836 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~  836 (1120)
                      ...|.++.|..++..++.+...|.|.+-|.+                      +......    ..-...|.+++||||+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~e----------------------t~~~eiv----g~vd~GI~aaswS~De  121 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPE----------------------TLELEIV----GNVDNGISAASWSPDE  121 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccc----------------------ccceeee----eeccCceEEEeecCCC
Confidence            3689999999999999999999988876542                      2221111    1256789999999999


Q ss_pred             CEEEEEeCCcEEEEEcCCCceeeeecCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeEeecccccc
Q 001224          837 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKR  910 (1120)
Q Consensus       837 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~~h~~~  910 (1120)
                      ++++..+.+..-++...+..++....-+     .+....+-|-. ....+ -| ..|.....+....+ ......-| +.
T Consensus       122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~  197 (1265)
T KOG1920|consen  122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH  197 (1265)
T ss_pred             cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence            9999998544444444444444332211     11112222221 00000 01 11111111111100 00111112 22


Q ss_pred             eEEEEEccCCCEEEE-----EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE----EeCCeE
Q 001224          911 ITGLAFSHALNVLVS-----SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQL  981 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s-----~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~----~~d~~v  981 (1120)
                      =+.|.|--||+++|+     ....+.|+|||-+ |....      ...  +..+.-.+++|-|.|.++++    ++|+.|
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns------~se--~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS------TSE--PVEGLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc------ccC--cccccccceeecCCCCeEeeeeecCCCCcE
Confidence            356899999999987     3333789999987 32211      111  11123478999999999998    256779


Q ss_pred             EEEEcCCceeeecccc--CCCCCCeeEEEECCCCcEEEE---EEcCCcEEEEEcCCcceee--eeCCCcccCCCCCCCCc
Q 001224          982 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRC--RINPSAYLPAGVSSSNV 1054 (1120)
Q Consensus       982 ~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~~~Dg~v~iwd~~~~~~~~--~~~~~~~~~~g~~~~~v 1054 (1120)
                      .+|.-+. -....+..  +....+|..++|+.++..|++   ......|++|-+.+..--.  .+.    ++..     .
T Consensus       269 vffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~-----~  338 (1265)
T KOG1920|consen  269 VFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK-----A  338 (1265)
T ss_pred             EEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-----c
Confidence            9998643 22222221  122445999999999999997   4455569999988765432  222    2211     1


Q ss_pred             cceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1055 ~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                         -+.|+|..+..|..-..+|...+.++
T Consensus       339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  339 ---LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ---cccccCCCceeEEEEecCCcEEEEEE
Confidence               26677755555555556666555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=7.7e-05  Score=77.51  Aligned_cols=223  Identities=14%  Similarity=0.191  Sum_probs=131.5

Q ss_pred             cccCCCCceEEEEEcCCCC-eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      ++.+|...|..++|||..+ ++..++.+..|+|.|+++...+.   .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            6888999999999999766 78889999999999999977655   45556 78999999999877 8999999999999


Q ss_pred             EECCCCce-eEEeec--cccCeEEEeeccC----CCceEEEEEecCCeEEEEecCCCCCc--eeeeC-CCCceeEEEEcC
Q 001224          500 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSR--VDYEA-PGRWCTTMAYSA  569 (1120)
Q Consensus       500 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~s~  569 (1120)
                      ||++..+- +..+.+  ...+|..++..+.    +.|.+++....+  +.+|.+......  ..+.. ..+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 222222  2234444332111    112234433332  445654322111  11111 111222222222


Q ss_pred             ----------------------------CCCeEE------ecccccc---eeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001224          570 ----------------------------DGTRTY------QGFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS  611 (1120)
Q Consensus       570 ----------------------------~g~~~~------~~~~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  611 (1120)
                                                  ||..+.      .|.....   -..+.-.++.++++. ++..+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence                                        111110      0110000   011222344555555 55678899999999


Q ss_pred             CceeEEEecCCCCCCcCeEEEcC-CC-CEEEEEECCCcEEEEEcc
Q 001224          612 VQLLTSIDADGGLPASPRIRFNK-DG-CLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       612 ~~~~~~~~~~~~~~~v~~~~~s~-~~-~~l~~~~~dg~i~iwd~~  654 (1120)
                      ++.++++....   .|.+++... ++ .+|++- .|..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            99999987652   465555443 33 355544 45678887643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=4.8e-05  Score=86.69  Aligned_cols=207  Identities=14%  Similarity=0.170  Sum_probs=133.0

Q ss_pred             EEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCCEEEEEeCCCC-----EEEEECCCccccc-
Q 001224          872 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK-  944 (1120)
Q Consensus       872 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~-  944 (1120)
                      +|++ ++..+|.|+.+|.|.+++ ++-+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3456 677899999999998887 345566888888777 555555555578999888865     8999998764433 


Q ss_pred             ceee---eccCCCC-CCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee--eeccccCCCCCCeeEEEECCCCcEEE
Q 001224          945 NRFL---QIPTGRT-PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVY 1017 (1120)
Q Consensus       945 ~~~~---~~~~~~~-~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~ 1017 (1120)
                      ..++   ....... ..+.++..++.|.+-+.+|+| .+|.|..+.-+-.+.  .+.-.......+|+.+++..|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            3343   2222111 123578899999999999998 788888875332111  11111122378999999999999844


Q ss_pred             EEEcCCcEEEEEcCCcceeee-eCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 001224         1018 ACFLDATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus      1018 s~~~Dg~v~iwd~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1092 (1120)
                      -+..-..|.+|.+....+... +.        +++..+.  +.+|++..++ ++.++ +..|.+++......-|..
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceeeee
Confidence            444567899999984442222 22        2233344  6777763332 44433 567888887765544443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.26  E-value=6.2e-05  Score=85.37  Aligned_cols=224  Identities=11%  Similarity=0.030  Sum_probs=136.5

Q ss_pred             cCCCEEEEEe--CCcEEEEEcCCCceeeeecC------C---------CCCeEE-----EEEecCCCcEEE-EEeCCCcE
Q 001224          834 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIA-IGMDDSSI  890 (1120)
Q Consensus       834 ~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~la-sg~~dg~v  890 (1120)
                      .||+|+..-.  +..|...+++..++-+.+.-      |         ...|.+     +=++| ||+.+. +.-..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence            4889999887  46676667665554333211      1         111211     22444 554442 22234567


Q ss_pred             EEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCC--EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          891 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       891 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      .+.|..+.+...++.--. ....+++++||+++.+.+.+..  ..+-.+...+......+...          ..-++.+
T Consensus       218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk  286 (635)
T PRK02888        218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK  286 (635)
T ss_pred             EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence            777777766665554322 3356789999999988763221  11222222111100000000          0113355


Q ss_pred             CCcEEEEEeCCeEEEEEcCC-----ceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcce-------
Q 001224          969 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1035 (1120)
Q Consensus       969 dg~~la~~~d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~------- 1035 (1120)
                      +|++..+ .++.|.+.|..+     ...+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+.       
T Consensus       287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            7877666 467899999998     344444432   56788999999999987665 478999999988663       


Q ss_pred             -----eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1036 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1036 -----~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                           ...++      -|     .-|+..+|.+ +|+...|-..|..|..|++..
T Consensus       363 ~~~~vvaeve------vG-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPE------LG-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeec------cC-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                 33322      12     4577899998 588999999999999999986

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.0001  Score=76.71  Aligned_cols=261  Identities=13%  Similarity=0.082  Sum_probs=148.7

Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCC-EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  879 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  879 (1120)
                      .++..+..+=.... .+..  +...|..++|||..+ .+..++ +.+|+|.|+.+..++..+..+ ..+.+++|.-++..
T Consensus       174 Gv~~l~~~~fkssq-~lp~--~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h  249 (463)
T KOG1645|consen  174 GVQKLESHDFKSSQ-ILPG--EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH  249 (463)
T ss_pred             ceEEeccCCcchhh-cccc--cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcc
Confidence            34455444433332 2333  788899999999888 677777 899999999999888888877 77999999998888


Q ss_pred             EEEEEeCCCcEEEEEeecce-eeEeecc--cccceEEEE------EccCCCEEEEEeCCCCEEEEECCCcccccceeeec
Q 001224          880 IIAIGMDDSSIQIYNVRVDE-VKSKLKG--HSKRITGLA------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  950 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~~~-~~~~l~~--h~~~V~~l~------~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~  950 (1120)
                      +|..|..+|.|.|||++.-+ .+..+.+  -..+|..++      ..+.|.+|+....+  +..|++..........+..
T Consensus       250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel  327 (463)
T KOG1645|consen  250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL  327 (463)
T ss_pred             eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence            99999999999999998633 2222222  123333333      23345566655543  5667765432211111111


Q ss_pred             cCCCCCCCCCCcEEEEccCCcEEEEE--eCC------eEEE-EEcCCceeeeccccCCC-CCCe------eEEEECCCCc
Q 001224          951 PTGRTPTAQSDTRVQFHQDQIHFLVV--HET------QLAI-FETTKLECVKQWVPRES-SAPI------THATFSCDSQ 1014 (1120)
Q Consensus       951 ~~~~~~~~~~i~~~~fspdg~~la~~--~d~------~v~i-~d~~~~~~~~~~~~~~h-~~~v------~~l~~s~dg~ 1014 (1120)
                      .     .++...++.+.+-.+.++.+  .+.      .+-. -|-..|..+..... +| .+.-      ..+.=.+|..
T Consensus       328 e-----~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn  401 (463)
T KOG1645|consen  328 E-----PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNN  401 (463)
T ss_pred             C-----CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceecccccc
Confidence            1     01234455555544555543  111      1111 11112222111110 11 1110      1122245666


Q ss_pred             EEEE-EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1015 LVYA-CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1015 ~l~s-~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      +++. +.....+.+||..+++.+.++...         .++.  .+.....++.-++..-+|..++|+..+.
T Consensus       402 ~iv~~gd~tn~lil~D~~s~evvQ~l~~~---------epv~--Dicp~~~n~~syLa~LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  402 YIVVVGDSTNELILQDPHSFEVVQTLALS---------EPVL--DICPNDTNGSSYLALLTDDRVHIYKNES  462 (463)
T ss_pred             EEEEecCCcceeEEeccchhheeeecccC---------ccee--ecceeecCCcchhhheecceEEEEecCC
Confidence            6554 444578999999999999987722         2243  4554433444445555688889887653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.21  E-value=2e-05  Score=89.89  Aligned_cols=181  Identities=15%  Similarity=0.163  Sum_probs=132.7

Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  913 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  913 (1120)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-|..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            445666776 788999999988887777655556666655   6789999999999999999999999999999999986


Q ss_pred             EEEccCCCEEEEEeC---------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEE
Q 001224          914 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA  982 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~~~d~~v~  982 (1120)
                      +..  .|+.|+++|.         |.-|+|||++.-+..  .+++...       ...-+.|.|.  .+..+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~-------~P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPY-------GPQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCccccc-------CchhhhhcccccceEEEEeccccee
Confidence            665  6889999886         456899999873321  1222221       2255677775  3444446888888


Q ss_pred             EEEcCCc-ee-eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          983 IFETTKL-EC-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       983 i~d~~~~-~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      +-|..+. .. ...+........+..+++|++|+.++.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8884322 11 12222223355699999999999999999999999997

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.20  E-value=0.031  Score=65.79  Aligned_cols=470  Identities=10%  Similarity=0.084  Sum_probs=239.0

Q ss_pred             cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEeeccCCCce----EEEEEecCCeEEEEec
Q 001224          472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY  546 (1120)
Q Consensus       472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~----~l~s~~~dg~i~iwd~  546 (1120)
                      +.++..+.+.+..  .++.++.++.+...++..+...... ......|.|+.++|.++++    +++.|..+..+.+   
T Consensus       488 ~~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~---  562 (1096)
T KOG1897|consen  488 GKITIGVVSANAS--QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMI---  562 (1096)
T ss_pred             CceEEEEEeecce--EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEE---
Confidence            3444444445555  3666666778888887766622111 2234678888887665443    4555554433332   


Q ss_pred             CCCCCceeeeCCCCceeEEEEcCCCCeEEecc-----cccceeEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeEEEe
Q 001224          547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSID  619 (1120)
Q Consensus       547 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~  619 (1120)
                                        +.+.||........     -.+.+-...+-.+..+|+++..||.+.-+.++  ++..-..-+
T Consensus       563 ------------------l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk  624 (1096)
T KOG1897|consen  563 ------------------LTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK  624 (1096)
T ss_pred             ------------------EEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence                              23333332111110     01123333444456789999999998777554  444332222


Q ss_pred             cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001224          620 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  699 (1120)
Q Consensus       620 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1120)
                      .+-++.++.=-.|+..++.-+.+..|.-..+|..+.. -.+..+.-..-       .   .+++..              
T Consensus       625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev-------~---~~c~f~--------------  679 (1096)
T KOG1897|consen  625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEV-------N---HMCPFN--------------  679 (1096)
T ss_pred             cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHh-------h---hhcccc--------------
Confidence            2333445555566665555555555666666654322 11111100000       0   011110              


Q ss_pred             ccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224          700 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  779 (1120)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  779 (1120)
                                       ++...-.+.....+.+++..++..+......   .|.   ....+.+++.+....+.+.+...
T Consensus       680 -----------------s~a~~d~l~~~~~~~l~i~tid~iqkl~irt---vpl---~~~prrI~~q~~sl~~~v~s~r~  736 (1096)
T KOG1897|consen  680 -----------------SDAYPDSLASANGGALTIGTIDEIQKLHIRT---VPL---GESPRRICYQESSLTFGVLSNRI  736 (1096)
T ss_pred             -----------------cccCCceEEEecCCceEEEEecchhhcceee---ecC---CCChhheEecccceEEEEEeccc
Confidence                             1111122222333566676666544322211   221   23344556665433333333221


Q ss_pred             eEEEeeecccccCCCCccccccCceeecCCCCCccccc-CCCCCCCCCccEEEEccC-CCEEEEEe-----------CCc
Q 001224          780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK  846 (1120)
Q Consensus       780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d-~~~l~~~s-----------dg~  846 (1120)
                      ....=      .  .+...-...++++|..+-+.+... +........+.++.|..| +.++++|.           .|.
T Consensus       737 e~~~~------~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR  808 (1096)
T KOG1897|consen  737 ESSAE------Y--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR  808 (1096)
T ss_pred             ccchh------h--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence            11000      0  011111113456666665543321 111111222334447777 77888773           277


Q ss_pred             EEEEEcCCCceeeeecCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEE
Q 001224          847 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV  924 (1120)
Q Consensus       847 i~vwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~  924 (1120)
                      |.+|.+..++.+.....+  .+.+.++..-  +|++||.  -+..|++|+..+.+.++.-..|..++..+...-.|..++
T Consensus       809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~  884 (1096)
T KOG1897|consen  809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA  884 (1096)
T ss_pred             EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence            899988774444443222  3445555443  5777764  467899999999877777778889999999999999999


Q ss_pred             EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------eeec
Q 001224          925 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQ  994 (1120)
Q Consensus       925 s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~----------~~~~  994 (1120)
                      .|+--+.+.+-..+..+.......+-.  +.   ...+++.+-.+..++.+-.+|.+.+...++..          ....
T Consensus       885 VgDlm~Sitll~y~~~eg~f~evArD~--~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~  959 (1096)
T KOG1897|consen  885 VGDLMRSITLLQYKGDEGNFEEVARDY--NP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK  959 (1096)
T ss_pred             EeeccceEEEEEEeccCCceEEeehhh--Cc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence            999888877665544332111111111  11   35677888888888877667766665543210          1111


Q ss_pred             cccC------CCCCCeeE--EEECCCCcEEEEEEcCCcEEEEE
Q 001224          995 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       995 ~~~~------~h~~~v~~--l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      |..+      .|..-|..  -..+|-+.-+..|..+|.|-+--
T Consensus       960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen  960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred             EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEE
Confidence            1110      12333333  13345455577788898887653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.16  E-value=5.1e-06  Score=58.40  Aligned_cols=39  Identities=28%  Similarity=0.506  Sum_probs=36.5

Q ss_pred             CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          855 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       855 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      ++++.++.+|...|++|+|+| ++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            367889999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=0.00043  Score=77.63  Aligned_cols=282  Identities=13%  Similarity=0.108  Sum_probs=160.0

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      +...+.--+++..+++++.|++.|.+++|+-.                      .|.......  .+....+....++++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~----------------------~~~~~~~~~--~~~~~~~~~~~vs~~   87 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRH----------------------TGEMRKLKN--EGATGITCVRSVSSV   87 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecC----------------------chhhhcccc--cCccceEEEEEecch
Confidence            45667777888899999999999999998742                      222222111  113455666788899


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCcee-----eee-cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc----eeeEee
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTM-----ATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKL  904 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~-----~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----~~~~~l  904 (1120)
                      ..++|.|+ .|.|.++-+......     ... ..|...|+|++|++ +++.+.+|...|.|..-.+.+.    ...+.+
T Consensus        88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i  166 (726)
T KOG3621|consen   88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI  166 (726)
T ss_pred             hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence            98999888 688888887653221     111 23677899999999 9999999999999999888772    112233


Q ss_pred             cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----CcEEEEEeCCe
Q 001224          905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQ  980 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----g~~la~~~d~~  980 (1120)
                      -.-.+.|..+... ++.+|++...-  -.+.+++.++..+  .-+.....    -.-...+|-|.    ..-.+.+..-.
T Consensus       167 l~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~Q--IG~k~R~~----~~~~GACF~~g~~~~q~~~IycaRPG  237 (726)
T KOG3621|consen  167 LSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQ--IGKKPRKS----LIDFGACFFPGQCKAQKPQIYCARPG  237 (726)
T ss_pred             eccCcceEEeecc-cceehHhhhhh--hheeecchhHHHH--hcCCCcCC----ccccceEEeeccccCCCceEEEecCC
Confidence            3345667767665 34455544332  2344444422110  00001000    01234455554    33344455556


Q ss_pred             EEEEEcCC-ceeeeccccC-----------CCCC----------------CeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          981 LAIFETTK-LECVKQWVPR-----------ESSA----------------PITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       981 v~i~d~~~-~~~~~~~~~~-----------~h~~----------------~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      .++|.++- |+.+++...+           .+.+                ....+.+-.++ ++++-++-| |+|+|..+
T Consensus       238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~  315 (726)
T KOG3621|consen  238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN  315 (726)
T ss_pred             CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence            77777653 3333332110           0000                11111112222 344444444 88999888


Q ss_pred             cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+.+.-.+       +  ...+.  .++-   +++-|+.-..||.+++..+.+.+
T Consensus       316 ~~v~l~se-------~--~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  316 SQVYLWSE-------G--GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQ  356 (726)
T ss_pred             ceEEEeec-------C--CCcee--EEee---cCceEEEEecCCceeEEEeehhH
Confidence            77775433       1  11122  3333   35666666778888888877665

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0037  Score=73.05  Aligned_cols=210  Identities=12%  Similarity=0.086  Sum_probs=113.6

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecc---cccCe--EEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGV--NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~---h~~~V--~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      +..+..++.++.|.-.|..+|+.+-....-..   +...+  ..++.. ++.  .++.++.++.|.-+|.++|+.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            45666777789999999999886643211100   00011  011221 213  47778889999999999999998775


Q ss_pred             ccccC-----eE-EEeeccCCCceEEEEEe---------cCCeEEEEecCCCCCceeeeCCCCceeEEE-EcCCCCeEEe
Q 001224          513 GHEAP-----VY-SVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ  576 (1120)
Q Consensus       513 ~h~~~-----v~-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~g~~~~~  576 (1120)
                      .....     +. +..+.   + ..++.++         .++.+..+|..+++....+.........+. +.+.. ... 
T Consensus       138 ~~~~~~~~~~i~ssP~v~---~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-  211 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIV---K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-  211 (488)
T ss_pred             CCCCcCcceEecCCCEEE---C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence            43221     11 11111   1 2444443         367888999998888876654321110000 00000 000 


Q ss_pred             cccccce-eEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCceeEEEecCCCCC----CcCeEEEc
Q 001224          577 GFRKRSL-GVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN  633 (1120)
Q Consensus       577 ~~~~~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s  633 (1120)
                      +.....+ ....+++.+..++.++.++                  .|.-+|..+|+.+..++...+..    ......+.
T Consensus       212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~  291 (488)
T cd00216         212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA  291 (488)
T ss_pred             cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence            1111111 1244555556677776554                  78889999999888775322110    00111111


Q ss_pred             ----CCCC---EEEEEECCCcEEEEEccCc
Q 001224          634 ----KDGC---LLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       634 ----~~~~---~l~~~~~dg~i~iwd~~~~  656 (1120)
                          -+|.   .+++++.+|.+..+|..+|
T Consensus       292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG  321 (488)
T cd00216         292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTG  321 (488)
T ss_pred             eccccCCCeeEEEEEECCCceEEEEECCCC
Confidence                1333   5667777888888887777

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00016  Score=82.09  Aligned_cols=185  Identities=14%  Similarity=0.195  Sum_probs=129.2

Q ss_pred             CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224          824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  902 (1120)
                      ...++|+++  .+++++-|+ +|.|++++.... . .+...|...      .. +|.++++|+.||.|.|..+.+.+...
T Consensus        39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHh--hcceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence            455666666  457899998 899999997643 2 333334333      44 79999999999999999999888776


Q ss_pred             eecccccceEEEEEccC-----CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001224          903 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  977 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d-----~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~  977 (1120)
                      ++. ...++.+++++||     .+.+++||.-| +.++.-.=-.......+..      ..++|.++.|  .|.++|-+.
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence            665 3467999999998     57899999888 7776532111111111222      2257888888  477888899


Q ss_pred             CCeEEEEEcCCceeeeccccCCC----CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          978 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      |-.|++||+.+.+.+..+..+..    ..-...+.|.++.++++ | ...+|+|..+.
T Consensus       178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            99999999999988877654321    12244678877766544 4 34578888877

>smart00668 CTLH C-terminal to LisH motif

Probab=98.04  E-value=5.7e-06  Score=64.28  Aligned_cols=53  Identities=30%  Similarity=0.490  Sum_probs=43.5

Q ss_pred             cHHHHHHHHhccCHHHHHHHhcccccccCcccchhhHHHHHHHHHHHHHccCCH
Q 001224           37 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   90 (1120)
Q Consensus        37 ~~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~   90 (1120)
                      ++..++++|+.|+|+.|++.+...........+. +.|.|++|+|+|+++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence            3678999999999999999999984433333334 9999999999999998764

Alpha-helical motif of unknown function.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=0.00071  Score=75.24  Aligned_cols=282  Identities=11%  Similarity=0.149  Sum_probs=141.3

Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCC-CCccc-----------cccCceeecCC--------CCCcccccC
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKAT-----------ASVAPQLWQPP--------SGIMMTNDV  818 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~-----------~~~~~~~w~~~--------~g~~~~~~~  818 (1120)
                      .|..+.|+++..-++++...|.+.+|.+...+... .....           ....-.+-|..        .|......+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            57889999998889999999999999987654332 00000           00011122211        122111222


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee--ecC------CCCCeEEEEEec----CCC---cEEE
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA  882 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~--~~~------~~~~i~~l~~sp----~d~---~~la  882 (1120)
                      ..  ..++|++++.| |--++|+|. +|.+.|.|++....+..  +..      ....|+++.|+.    +|+   -.|.
T Consensus        83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22  47899999997 555999999 89999999987666544  111      234688888872    122   4788


Q ss_pred             EEeCCCcEEEEEeec---ceeeEee----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccccee--eeccCC
Q 001224          883 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTG  953 (1120)
Q Consensus       883 sg~~dg~v~vwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~--~~~~~~  953 (1120)
                      +|+..|.+.+|.+.-   +.....+    ..+.++|..+.                  ..+.++++......  ++....
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence            899999999998752   2111111    12223332222                  22333322211100  000000


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEEC-----CCCcEEEEEEcCCcEEEE
Q 001224          954 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCVF 1028 (1120)
Q Consensus       954 ~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~Dg~v~iw 1028 (1120)
                      .            .+...+++++.+..++++...+.+......  ...-....+++-     ..+..|++-..+|.|++|
T Consensus       222 g------------~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  222 G------------ISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             T----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             C------------CCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence            0            011235666789999999999887765544  112233344552     356678888999999999


Q ss_pred             EcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1029 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1029 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      .+...+.+..+.......    .....  ...+++ +|+.++-.+ ...+.++.+
T Consensus       288 SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv  334 (395)
T PF08596_consen  288 SLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSV  334 (395)
T ss_dssp             ETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred             ECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEE
Confidence            999999998877321111    11122  455666 577766665 334444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.00  E-value=0.0024  Score=67.37  Aligned_cols=258  Identities=14%  Similarity=0.153  Sum_probs=147.6

Q ss_pred             eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-----------CCcEEEEEcCCCceeeeecCCCC------
Q 001224          804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP------  866 (1120)
Q Consensus       804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~------  866 (1120)
                      .+.|..+++++...     ..+-.-.+.++||++.+.+++           ...|.+||..+......+.-...      
T Consensus        20 ~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   20 YVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             EEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            34455555544332     223344578899999998753           12399999999877765432221      


Q ss_pred             -CeEEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224          867 -AATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  943 (1120)
Q Consensus       867 -~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~  943 (1120)
                       ....++++. |++++.+..  --.+|.|-|+..++.+.++.-..  ...+--+. .+.+.+.|.||.+.-..++...+.
T Consensus        95 ~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   95 PYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             --GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSE
T ss_pred             ccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCE
Confidence             223457777 677666543  33467788888887777665322  12222222 245778889999999998843333


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceee--------------eccccCCCCCCeeEEE
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECV--------------KQWVPRESSAPITHAT 1008 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~~d~~v~i~d~~~~~~~--------------~~~~~~~h~~~v~~l~ 1008 (1120)
                      .......+.....  .....-+++.. +.++.++.+|.|+-.|+......              ..|.    .+...-++
T Consensus       171 ~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr----PGG~Q~~A  244 (342)
T PF06433_consen  171 AQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR----PGGWQLIA  244 (342)
T ss_dssp             EEEEEEESSTTTS---B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE----E-SSS-EE
T ss_pred             eEeeccccCCCCc--ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC----Ccceeeee
Confidence            3222233322211  12233444443 45666778888887777654321              1233    22344567


Q ss_pred             ECCCCcEEEEEEc--------C--CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEE-eCCCc
Q 001224         1009 FSCDSQLVYACFL--------D--ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGG 1077 (1120)
Q Consensus      1009 ~s~dg~~l~s~~~--------D--g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~-~~Dg~ 1077 (1120)
                      +.+....|++--.        |  ..|.++|+.+++.+.++.    +...     +.  +++.+.++..+|++. ..++.
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~  313 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGT  313 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTE
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCe
Confidence            7766555544321        1  248888999999999987    2211     33  677777666677665 45899


Q ss_pred             EEEEecCCCC
Q 001224         1078 VHVFEPLESE 1087 (1120)
Q Consensus      1078 v~vW~~~~~~ 1087 (1120)
                      |.|||..+|+
T Consensus       314 l~v~D~~tGk  323 (342)
T PF06433_consen  314 LDVYDAATGK  323 (342)
T ss_dssp             EEEEETTT--
T ss_pred             EEEEeCcCCc
Confidence            9999999987

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00034  Score=80.03  Aligned_cols=199  Identities=13%  Similarity=0.180  Sum_probs=135.7

Q ss_pred             EEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001224          830 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD----  898 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~----  898 (1120)
                      -++++.+..++.|+ +|.|.+.+- +.+.++.+..+... |+.+-... +..+|++-+.|+     .|+||+++..    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            45678888999999 899988884 34555777777777 44454443 446777776665     4899999752    


Q ss_pred             --eee--Eeecc-----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          899 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       899 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                        .++  ..+..     ...++.+++.|.+-+.+|.|-.||.|..+.=+--..+..+..-...+.    .+|+.++|-.+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              233  12222     245788999999999999999999999885443222222222222232    58999999999


Q ss_pred             CcE-EEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          970 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       970 g~~-la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      ++. +.++....|.+|.+.... ...-..+.|...+.|-+|++-..-+++++ +..+.+|+.+....-
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC  248 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence            987 445678899999998444 33333457788899999887655455554 567999998754443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.99  E-value=0.00077  Score=75.34  Aligned_cols=291  Identities=13%  Similarity=0.109  Sum_probs=147.6

Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  679 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1120)
                      ..+.+.+||+.+++.......   ...+....|||+|+.++... ++.|.+++..++....-+..+ ...          
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~----------   85 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG----------   85 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT----------
T ss_pred             cceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee----------
Confidence            356799999999765544332   23578899999999999886 478888877665221111111 000          


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224          680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  759 (1120)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  759 (1120)
                                                                 +..|-.|     |-..+               .--..
T Consensus        86 -------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~  102 (353)
T PF00930_consen   86 -------------------------------------------IYNGVPD-----WVYEE---------------EVFDR  102 (353)
T ss_dssp             -------------------------------------------EEESB-------HHHHH---------------HTSSS
T ss_pred             -------------------------------------------EEcCccc-----eeccc---------------ccccc
Confidence                                                       0000000     00000               00011


Q ss_pred             EEEEEEcCCCceEEEeccC-ceEEEeeeccc-------------ccCCCCccccccCceeecCCCCCcccccCC--CCCC
Q 001224          760 ISRLIFTNSGNAILALASN-AIHLLWKWQRT-------------ERNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNP  823 (1120)
Q Consensus       760 i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~-------------~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~--~~~~  823 (1120)
                      -.++.|||||+.|+...-| ..+..+.+...             .....|.......+.+++..+++.......  ....
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~  182 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ  182 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred             ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence            1245667777666655543 33333322111             011122222334556777777765432222  0124


Q ss_pred             CCCccEEEEccCCCEEEEE-eC-----CcEEEEEcCCCceeeeecC-CC---CCeEEEEEe-cCCCcEEEEEeCCCcEEE
Q 001224          824 EEAVPCFALSKNDSYVMSA-SG-----GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQI  892 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~-sd-----g~i~vwd~~~~~~~~~~~~-~~---~~i~~l~~s-p~d~~~lasg~~dg~v~v  892 (1120)
                      ..-+..+.|+++++.++.. .+     ..+.+.|..++.+...... ..   ..-....|. +++..+|.....||.-+|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            5668889999999944443 22     2377778877655333221 11   122355554 656777777778887666


Q ss_pred             EEeec-ceeeEeecccccceEE-EEEccCCCEEE-EEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCC-cEEEE
Q 001224          893 YNVRV-DEVKSKLKGHSKRITG-LAFSHALNVLV-SSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQF  966 (1120)
Q Consensus       893 wd~~~-~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~f  966 (1120)
                      |-+.. +.....+....-.|+. +.++++++.|. ++..+  +.-.+|.+.........++....       .. ..+.|
T Consensus       263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-------~~~~~~~~  335 (353)
T PF00930_consen  263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-------GDHYSASF  335 (353)
T ss_dssp             EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-------STTEEEEE
T ss_pred             EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-------CCceEEEE
Confidence            65543 2334566666667755 67888877665 55442  24445544432111122332222       22 48999


Q ss_pred             ccCCcEEEE
Q 001224          967 HQDQIHFLV  975 (1120)
Q Consensus       967 spdg~~la~  975 (1120)
                      ||+|++++.
T Consensus       336 Spdg~y~v~  344 (353)
T PF00930_consen  336 SPDGKYYVD  344 (353)
T ss_dssp             -TTSSEEEE
T ss_pred             CCCCCEEEE
Confidence            999999887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.99  E-value=0.00015  Score=83.03  Aligned_cols=185  Identities=11%  Similarity=0.120  Sum_probs=129.8

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  516 (1120)
                      ++..++-|+-...+..+|+.+.+..+   ...-..+.|.-|..  +++  ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            45567778888889999999877554   22223334665553  456  799999999999999999999999999999


Q ss_pred             CeEEEeeccCCCceEEEEEec---------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      .|..+..    .|+.|+++|.         |.-|++||++..+.+..+..+.++ .-+.|.|.-.               
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~---------------  278 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT---------------  278 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc---------------
Confidence            9987764    3468888875         456899999987665444333221 1222333221               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC-ce-eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                           ..+++++..|...+-|..+- .+ ......+.....+..+.+|++|..++.|..+|.|.+|.-
T Consensus       279 -----t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  279 -----TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             -----ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence                 45888888999999883321 11 222222222335889999999999999999999999973

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.0065  Score=67.93  Aligned_cols=104  Identities=16%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             ecCCCeEEEEE--------eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          373 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       373 spdg~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      |||++++|+.-        +..+.+.|||+.+++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            68898766522        123678899999876553                    22225679999999999999998


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecc-------c---------ccCeEEEEEcCCCCceEEEEe-cCCCcEEEEE
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD  501 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~d~~~~~l~s~-s~d~~i~vwd  501 (1120)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+-|||||++  |+.. -++..|+.+.
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP  129 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence            6 57799999888754432  2222       0         112356889999996  4433 3344444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.96  E-value=0.0026  Score=74.31  Aligned_cols=244  Identities=10%  Similarity=0.059  Sum_probs=138.4

Q ss_pred             CEEEEEe-CCcEEEEEcCCCceeeeecCCCCC-----eE-EEEEecCCCcEEEEEe---------CCCcEEEEEeeccee
Q 001224          837 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----AT-FLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV  900 (1120)
Q Consensus       837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----i~-~l~~sp~d~~~lasg~---------~dg~v~vwd~~~~~~  900 (1120)
                      ..++.++ ++.|.-+|.++++.+-.+......     +. +..+.  ++ +++.++         .+|.|+-+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence            4566665 899999999999988776543321     11 22232  33 444454         367899999999988


Q ss_pred             eEeeccccc--------------------ceE-EEEEccCCCEEEEEeCCC------------------CEEEEECCCcc
Q 001224          901 KSKLKGHSK--------------------RIT-GLAFSHALNVLVSSGADS------------------QLCVWSSDGWE  941 (1120)
Q Consensus       901 ~~~l~~h~~--------------------~V~-~l~~s~d~~~l~s~s~Dg------------------~v~iWd~~~~~  941 (1120)
                      +-.+.....                    .|. +.++.+.+..++.++.++                  .|.-.|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            776643211                    111 234444566777776665                  68888999887


Q ss_pred             cccceeeeccCCCC-CCCCCCcEEEE-ccCCc---EEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224          942 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus       942 ~~~~~~~~~~~~~~-~~~~~i~~~~f-spdg~---~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
                      ..-........... .......-... .-+|.   .+++ +.+|.+..+|..+|+.+-.....     ...++.+|  ..
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~  340 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL  340 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence            65432221111000 00000000000 12343   3444 47899999999999987654321     11233444  33


Q ss_pred             EEEE------------------EcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224         1016 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus      1016 l~s~------------------~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
                      ++.+                  ..+|.|.-.|+.+|+.+-+............+.....-.++.   .+..|++++.||.
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~  417 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY  417 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence            3322                  236789999999999887766321100000000010001222   2578999999999


Q ss_pred             EEEEecCCCCCCCCCC
Q 001224         1078 VHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1078 v~vW~~~~~~~~~~~~ 1093 (1120)
                      |+.+|..+|+..|...
T Consensus       418 l~ald~~tG~~lW~~~  433 (488)
T cd00216         418 FRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEEECCCCceeeEEE
Confidence            9999999999888864

The alignment model contains an 8-bladed beta-propeller.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.93  E-value=1.5e-05  Score=49.47  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHhc
Q 001224            6 RELVFLILQFLDEEKFKETVHKLEQES   32 (1120)
Q Consensus         6 ~e~~rli~q~L~~~g~~~s~~~L~~Es   32 (1120)
                      +++.+||++||.+.||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.0026  Score=70.77  Aligned_cols=268  Identities=14%  Similarity=0.203  Sum_probs=138.7

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeE------ee------------ceeeeccCCCCc------cccccc
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSM------PLQAAL  421 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~~------~~~~~~  421 (1120)
                      .|++|.|+++... |++|...|.|.||.+..++.-.      ..            +-.+.|+.....      -.+..+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999999775 8999999999999987654332      00            111223221111      112334


Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecc------cccCeEEEEEc---C--CC-CceEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS---H--PN-KQLCVI  489 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s---~--d~-~~~~l~  489 (1120)
                      +....++|++++.| |=.++|.|+.+|.+.|.|+++...+.. ..+..      ....|+++.|+   .  |+ ..++++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            56668999999998 666999999999999999987765532 22333      23468888886   2  22 114788


Q ss_pred             EecCCCcEEEEECC-C--CceeE----EeeccccCeEEEeeccCCC-------------------ceEEEEEecCCeEEE
Q 001224          490 TCGDDKTIKVWDAT-N--GAKQY----IFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA  543 (1120)
Q Consensus       490 s~s~d~~i~vwd~~-~--~~~~~----~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i  543 (1120)
                      .|...|.+.+|.+. .  +....    ....+.++|..++.-...+                   -+-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999875 2  22211    1124566766665321111                   012333344678888


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      +...+.+..............+.+-+-               .. ...+..|++-..+|.|+++.+-.-+.+..+.....
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~---------------~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPT---------------IS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEE---------------E--EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             EeCCCCcccceeeccccccceEEEEee---------------cc-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence            877655443322211111111222100               00 11234578888999999999999888888775321


Q ss_pred             --CCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          624 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       624 --~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                        ...+...+++++|..++-.+. ..+.++.+
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence              123567888999987665543 35555544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.0013  Score=73.90  Aligned_cols=121  Identities=10%  Similarity=0.035  Sum_probs=92.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +...|.--+++..+++ ++.|+.-|.+++|+-.+++....                  ...+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence            4455555667778885 99999999999999888776542                  1233556788888999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeee--ee-cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHL--EI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      .|+..|.|.++-+..+..-....  .. ..|...|++++|++|+.  .+.+|...|.|..-.+.+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            99999999999887643222111  11 13778999999999999  599999999999888776

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.88  E-value=0.00074  Score=74.92  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=81.6

Q ss_pred             CCCccEEEEcc-CCCEEEEE----e-CCc----EEEEEcCCCceeee---ecCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001224          824 EEAVPCFALSK-NDSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  890 (1120)
Q Consensus       824 ~~~v~~l~~s~-d~~~l~~~----s-dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v  890 (1120)
                      +....++.||- +...+.+.    + +|.    ..+|+....+..+.   --.....+.+++++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            34456777775 33344432    2 333    46677665433211   123567899999999 88899999999999


Q ss_pred             EEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224          891 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  940 (1120)
Q Consensus       891 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~  940 (1120)
                      .+||...+..  .+..+.-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999876632  23334456788999999999999999999999998764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.88  E-value=0.041  Score=64.55  Aligned_cols=61  Identities=13%  Similarity=0.117  Sum_probs=41.2

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                      |.|.-+|+.+++..-..+.......+... - .+.+++.++.||.++.+|..+|+.+...+-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-T-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceE-E-CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            45778888888777655432222222212 2 3447777888999999999999998877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.0043  Score=63.93  Aligned_cols=217  Identities=10%  Similarity=0.085  Sum_probs=117.5

Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc-ccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .+.+-...+..++|.|+++.++++....+.|..++. +|+.++.+.-. .+..-+|++..++.++++--.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455556679999999966778888888899988886 47777765432 3457789998888888877678999999985


Q ss_pred             Cccccc-ceeeeccC-C-CCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceeee-----ccc-cCCCCCCee
Q 001224          939 GWEKQK-NRFLQIPT-G-RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVK-----QWV-PRESSAPIT 1005 (1120)
Q Consensus       939 ~~~~~~-~~~~~~~~-~-~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~---~~~~~-----~~~-~~~h~~~v~ 1005 (1120)
                      ...... ....+... + .......+..++|++.+..|.++ ...-..+|.+..   ...+.     .+. .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            432211 11111111 1 11122468999999987766665 444556666543   11111     011 112355689


Q ss_pred             EEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1006 HATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1006 ~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      ++++.|. |.+++.......|.++| .+|+.+..+......+ |-....-.+-.|+|.+ +| .|...++-+..+++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence            9999886 45666666778899999 7788777666322211 1011113466899998 56 55555566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.81  E-value=3e-05  Score=52.40  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHHHHhcCCC
Q 001224            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF   35 (1120)
Q Consensus         4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~   35 (1120)
                      -++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999975

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.77  E-value=0.0018  Score=73.10  Aligned_cols=222  Identities=10%  Similarity=0.107  Sum_probs=117.2

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      .....+.++|+|+.+++ +.+|...+|.....                      +-        ...+.....+|.+.++
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~   81 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR   81 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence            44678999999997777 66667777652100                      00        0234456788888666


Q ss_pred             EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224          838 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      +.+.-..++|.++.--+......+... ..+..+-    .|.+|...+.+ .|.+||..+++.+..+...  +|..|.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence            544444788999743233332333321 1233332    26677776544 8999999999999998844  38999999


Q ss_pred             cCCCEEEEEeCCCCEEEEECCCc---------ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224          918 HALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  988 (1120)
Q Consensus       918 ~d~~~l~s~s~Dg~v~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~  988 (1120)
                      ++|.+++-.+.+ .+.|++.+..         -......+....      ..|.+.+|..| .++.+... .++.  +-.
T Consensus       154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkY--l~~  222 (443)
T PF04053_consen  154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKY--LVN  222 (443)
T ss_dssp             TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEE--EET
T ss_pred             CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEE--EEc
Confidence            999999988865 5888776543         000111121111      36888999887 44444433 6666  333


Q ss_pred             cee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          989 LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       989 ~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                      |+.  +..+     ..++.=+.+.+....++....|+.|..+.++...
T Consensus       223 Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  223 GETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             TEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             CCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence            332  2222     4567777888877788888888888888776443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.77  E-value=0.014  Score=63.03  Aligned_cols=286  Identities=14%  Similarity=0.082  Sum_probs=135.4

Q ss_pred             EEcCCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224          764 IFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  842 (1120)
Q Consensus       764 ~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~  842 (1120)
                      +|.++|+.|+.++. +|.-.+|-+                    |..+++..+.  ..... .......++++.+.++..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg~g-~~~~g~~~s~~~~~~~Yv   98 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDGPG-DNTFGGFLSPDDRALYYV   98 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS--B-TTT-EE-TTSSEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccCCC-CCccceEEecCCCeEEEE
Confidence            67888977766555 555555543                    4455554442  11111 222346677888887765


Q ss_pred             e-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec-CCCcEEEEEeC----------------------CCcEEEEEeecc
Q 001224          843 S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGMD----------------------DSSIQIYNVRVD  898 (1120)
Q Consensus       843 s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~lasg~~----------------------dg~v~vwd~~~~  898 (1120)
                      . +..|+-.|+.+.+....+.....-+-...|.. .|+..++-.-.                      ...|.--|+.+|
T Consensus        99 ~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen   99 KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            5 57899999999877666655555554455542 25555442211                      123444566666


Q ss_pred             eeeEeecccccceEEEEEccCCCEEEEEeC----CCC-EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224          899 EVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----Dg~-v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l  973 (1120)
                      +....+. -..-+..+.|||....++.=+.    |.. -|||-+++.......+.+...     ...+..=-|.|||..|
T Consensus       179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTI  252 (386)
T ss_dssp             -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-E
T ss_pred             ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEE
Confidence            6443333 3344677899987655554333    332 378876653322222211111     1345667899999988


Q ss_pred             EE-E-----eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC----------------cEEEEEcC
Q 001224          974 LV-V-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSAA 1031 (1120)
Q Consensus       974 a~-~-----~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------------~v~iwd~~ 1031 (1120)
                      .. +     .+..|.-+|..+++......    ..+...+.-++||++++-=+.|.                .|+++++.
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence            76 3     23357778888876543322    22455677789999887544432                46678887


Q ss_pred             CcceeeeeCC-Cccc-CCCCCCCCccceEEEecCCCCCE-EEEEeCCCcEEEEecCC
Q 001224         1032 NLKLRCRINP-SAYL-PAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1032 ~~~~~~~~~~-~~~~-~~g~~~~~v~~~~i~~~p~d~~~-l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .+........ ..+. -.|+ .. +.--...|+|+ +++ |.+....|...|+-+.-
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPD-gk~VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPD-GKWVLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             TTEEEEEEE-------BTTB-SS-TT----EE-TT-SSEEEEEE-TTSS-EEEEEE-
T ss_pred             cCceeeeeeccCcceeecCC-Cc-cCCCCCccCCC-CCEEEEECCCCCCccEEEEeC
Confidence            7765432221 0111 1111 11 11124889995 555 56667778777776543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.77  E-value=0.017  Score=59.54  Aligned_cols=162  Identities=8%  Similarity=0.110  Sum_probs=96.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      -...+..++|+|+...|+++....+.|...+.+ |+.+.+.+                 +.+ .+..-.|++..++.+++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence            345699999999988899999999999999974 77766433                 233 34678889988888887


Q ss_pred             EEECCCeEEEEEccCCce---eee--eeeec---ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---CceeEEe
Q 001224          443 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF  511 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---~~~~~~~  511 (1120)
                      +--.++.+.++++.....   ...  ...+.   .+...+-.++|++.++.  |+.+-...-..++.+..   +..+...
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence            766789999998843221   111  11221   24567999999999886  34445555556666543   2222111


Q ss_pred             --------eccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224          512 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  546 (1120)
Q Consensus       512 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  546 (1120)
                              ......+.++++++. .+++++.......|..+|.
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred             cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence                    123345778888765 4577888888888888884

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.74  E-value=1.2e-05  Score=88.31  Aligned_cols=205  Identities=15%  Similarity=0.258  Sum_probs=127.2

Q ss_pred             CCCCceEEEEecCCC-eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCe
Q 001224          363 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~  440 (1120)
                      ....+.|++++-+.+ -++++|..+|.|.+-.+....--                 ...+..+|....++++|++ |...
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            446677887766543 58999999999999887643211                 1124667889999999999 7888


Q ss_pred             EEEEE----CCCeEEEEEccCCcee-eeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeec
Q 001224          441 FGVAY----SRHIVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEG  513 (1120)
Q Consensus       441 las~~----~dg~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~  513 (1120)
                      ||.|-    .|..+.|||+.++-.. .....+.+ -.....+++|..+.+  ++.+|...+.++++|++.. .....+  
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence            88883    4567999999986211 01111222 344667899998877  7889999999999998732 212222  


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEe-cCCCCCceeeeCC-C----CceeEEEEcCCCCeEEecccccceeEEE
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-G----RWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~-~----~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      .+..+..+.+.|- .+.++++-. ||.|.+|| ....+.......+ .    ..+..++|.|...               
T Consensus       194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt---------------  256 (783)
T KOG1008|consen  194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT---------------  256 (783)
T ss_pred             hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc---------------
Confidence            1223334444341 224666655 99999999 4333322211111 1    1345555555432               


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECC
Q 001224          588 FDTTKNRFLAAG-DDFSIKFWDMD  610 (1120)
Q Consensus       588 ~~~~~~~l~~~~-~dg~i~iwd~~  610 (1120)
                           ..+++.. ..++|+.+|+.
T Consensus       257 -----glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  257 -----GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             -----chhhhhccCcceEEEeccc
Confidence                 2344444 56788888875

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.70  E-value=0.017  Score=65.41  Aligned_cols=198  Identities=14%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             EEEccCCCEEEEEeCC------------cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          830 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       830 l~~s~d~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ++.+|.|.-+|...|.            .|++|+.. |+.+..+.-..+.|.++.|+. +.. |++-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence            5566666666666543            59999975 566666544448899999997 554 44567899999999862


Q ss_pred             ce------eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc-cceeeeccCCCCC---CCCCCcE-EEE
Q 001224          898 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTP---TAQSDTR-VQF  966 (1120)
Q Consensus       898 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~i~~-~~f  966 (1120)
                      ..      .+....-....+....+..+|-.+.+  .++.+.+-  ...... ..+.+....+...   ....... ..+
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence            22      11111112222333344445633333  34444333  222211 1011111111000   0001111 234


Q ss_pred             ccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          967 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       967 spdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +.+....+. ..++.+.+.+....+.   +   ...+++..|++||+|++||.-..+|.+.|...+-.+.+..+.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            445444443 4455566444332211   1   124689999999999999999999999999877666666665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.012  Score=66.19  Aligned_cols=208  Identities=13%  Similarity=0.124  Sum_probs=145.3

Q ss_pred             CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEeecce
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~  899 (1120)
                      .....+++++++..+.+..  ++.|.+.|..+.........- .....++++| +++.+.++..   ++.+.+.|..+++
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence            3345788889988666655  689999998776666555422 2678899999 5555544443   6889999988888


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--  976 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--  976 (1120)
                      .+.....-..+ ..++++|+|..+..+. .++.|.+.|..+.....    ...............++++|+|.++.+.  
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEec
Confidence            77775433344 8899999999665554 78899999977643221    0000001111244789999999977774  


Q ss_pred             eC--CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCcceeeeeC
Q 001224          977 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       977 ~d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+  +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.|.+-|..+......+.
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            22  58999999988877663322223 56778999999998888544 889999999988887655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.67  E-value=0.006  Score=68.94  Aligned_cols=217  Identities=17%  Similarity=0.190  Sum_probs=117.1

Q ss_pred             CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...+..+.++|+|++++++++|...++.....+...     .+.-...+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            445789999999999999999999999854443322     23456788998 565 55566688999973323333223


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  983 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i  983 (1120)
                      +... ..+..|-.   |.+|...+.+ .|.+||+++++.     +...+.     ..|..+.|+++|.+++...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV-----SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            3322 12333333   8888777655 799999998543     333322     1478999999999999988888888


Q ss_pred             EEcCCc--------------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce--eeeeCCCcccCC
Q 001224          984 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1047 (1120)
Q Consensus       984 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~ 1047 (1120)
                      ++....              ..+..+     ...|.+.+|..| -++. .+.. .++-  +-.|+.  ++.+.       
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiY-tT~~-~lkY--l~~Ge~~~i~~ld-------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIY-TTSN-HLKY--LVNGETGIIAHLD-------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEE-E-TT-EEEE--EETTEEEEEEE-S-------
T ss_pred             EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEE-EcCC-eEEE--EEcCCcceEEEcC-------
Confidence            876544              222211     457888888665 3333 3333 5665  333332  22222       


Q ss_pred             CCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1048 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1048 g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                          ..++  -+.+.|. .+.+.....|+.+..+.+...
T Consensus       233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HH
T ss_pred             ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHH
Confidence                2244  4556663 578888889999988877543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.65  E-value=0.00076  Score=74.82  Aligned_cols=129  Identities=11%  Similarity=0.094  Sum_probs=90.4

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEE----eCCCc----EEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  427 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  427 (1120)
                      ++...+.-.....++.||-...+.+.+-    +.+|.    -.+|++..++... ..+               +-.....
T Consensus       197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s  260 (545)
T PF11768_consen  197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS  260 (545)
T ss_pred             EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence            4444444556668888887554444432    22443    4567776544221 111               1234677


Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      .|.|++++|+.+.|+.|+.||+|++||...+...     +..+.-..+.++|.|+|.  ++++|+..|.+.+||+.-...
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence            9999999999999999999999999999876422     223445688999999999  899999999999999865443

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00045  Score=72.56  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhccc-ccccCcccchhhH
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIF   73 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~-~~~~~~~~~~~~~   73 (1120)
                      .+.+..+|..++...|..+.+..|-+|+|...+          +.++-++|..|+-.-|++.+..- ..+...  ..++.
T Consensus       116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE  193 (394)
T KOG2817|consen  116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLE  193 (394)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHH
Confidence            344689999999999999999999999999752          77889999999999999999875 222221  12388


Q ss_pred             HHHHHHHHHHHHccCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001224           74 FEIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQLL  119 (1120)
Q Consensus        74 ~~i~~~~~lEll~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ll  119 (1120)
                      |.|.++.|++++..|...  +|+++.|+.++||........+.|-.+|
T Consensus       194 ~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl  241 (394)
T KOG2817|consen  194 FKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL  241 (394)
T ss_pred             HHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence            999999999999999988  9999999999999775655555544433

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.61  E-value=0.01  Score=69.82  Aligned_cols=205  Identities=13%  Similarity=0.092  Sum_probs=112.8

Q ss_pred             CCeEEEEEecCCCcEEEEEe------CCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCC-CCEEEE--
Q 001224          866 PAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--  935 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~lasg~------~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iW--  935 (1120)
                      ..+...+++| +++.+|...      .|+.-.||-...+.....+ .+.  ..+.-.|+|||+.|++.... ..+++.  
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678999999 777776554      2444444433322222333 332  37889999999988877533 122222  


Q ss_pred             ---------ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE---EEcCCceeeec-----cccC
Q 001224          936 ---------SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVPR  998 (1120)
Q Consensus       936 ---------d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i---~d~~~~~~~~~-----~~~~  998 (1120)
                               +++.++...           .....|..+.|||||+.++...+++|.+   -....|. ...     +. .
T Consensus       427 ~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~-~  493 (591)
T PRK13616        427 PATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG-P  493 (591)
T ss_pred             CCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-c
Confidence                     333322110           1124699999999999999976788877   4444454 111     11 1


Q ss_pred             CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224          999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus       999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
                      +-...+.++.|..++.++ ++..++...+|.+.- |.... .     .+.+.....+  ++++-.+   ..++....+|.
T Consensus       494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-~-----~~~~n~~~~v--~~vaa~~---~~iyv~~~~g~  561 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-A-----LPSRNLSAPV--VAVAASP---STVYVTDARAV  561 (591)
T ss_pred             ccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-c-----cCCCCccCce--EEEecCC---ceEEEEcCCce
Confidence            223346889999999965 555555555555432 21111 1     1221111112  3666665   24666666774


Q ss_pred             EEEEecCCCCCCCCCCCCCCC
Q 001224         1078 VHVFEPLESEGKWGVPPPVDN 1098 (1120)
Q Consensus      1078 v~vW~~~~~~~~~~~~~p~~~ 1098 (1120)
                      +.+=.-.+++..|...++..+
T Consensus       562 ~~l~~~~~~~~~W~ev~~l~g  582 (591)
T PRK13616        562 LQLPNSDSGDQYWREVPGLMG  582 (591)
T ss_pred             EEecCCCCCCCCceECccccC
Confidence            444322333477877665543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.56  E-value=0.066  Score=62.84  Aligned_cols=149  Identities=12%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             cEEEEEeecceeeEeecccccceEE---------EEEccCCC---EEEEEeCCCCEEEEECCCcccccceee---ecc--
Q 001224          889 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL---QIP--  951 (1120)
Q Consensus       889 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~--  951 (1120)
                      +|.-.|++||+..-.++.....++.         +.+..+|+   .++.+..+|.+.+.|-.+|+.......   +..  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5666788888887766542222221         22224665   788999999999999999876311000   000  


Q ss_pred             --C---CCC--------------------C-CCCC--CcEEEEccCCcEEEE-EeC------------------------
Q 001224          952 --T---GRT--------------------P-TAQS--DTRVQFHQDQIHFLV-VHE------------------------  978 (1120)
Q Consensus       952 --~---~~~--------------------~-~~~~--i~~~~fspdg~~la~-~~d------------------------  978 (1120)
                        .   +..                    + ..+.  =..++++|+..++.+ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              0   000                    0 0000  022566676655554 111                        


Q ss_pred             ---------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          979 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       979 ---------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                               +.|.-+|+.+++..-......  ....+. +.-.+.+++.++.||.++.+|..||+.+.+.+
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                     357778888887665443211  111111 12255577778889999999999999998877

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.54  E-value=0.0039  Score=70.21  Aligned_cols=169  Identities=16%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeCCC---cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG---DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      ..+...+......+..-+|+|+++.+....-..+   .+.++|+.+++.....+                    -.+.-.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~  241 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG  241 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence            3344444456677888899999997555543333   49999999887654211                    233445


Q ss_pred             EEEEcCCCCeEEEEE-CCCe--EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--EEEEECCCC
Q 001224          431 RVIWSPDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNG  505 (1120)
Q Consensus       431 ~l~~spdg~~las~~-~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--i~vwd~~~~  505 (1120)
                      .-+|||||++||.+. .||.  |.+.|+.++...+    +..-.+.-..-.|+|||+. ++.+.+..|.  |.+.|++.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence            678999999988764 4565  5566777766322    4333333347789999997 4444555555  555565544


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEec-CCe--EEEEecCCCC
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG  550 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~  550 (1120)
                      .. ..+....+.-..-.  .+++|++++..+. +|.  |.+.|+.+..
T Consensus       317 ~~-~riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         317 QV-TRLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ce-eEeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            43 33322222111223  3567777777664 344  4555554443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.092  Score=59.17  Aligned_cols=241  Identities=16%  Similarity=0.162  Sum_probs=156.5

Q ss_pred             CccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ....+.+.+++..+.+..  ...+...+...................+++++.+.+..+....+..|.+.|..+.+.+..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            455678888886666554  234555555422211212211134567888884455666666678999999877766655


Q ss_pred             ecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  978 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d  978 (1120)
                      ..--. .-..++++++++.+..+..   ++++.+.|-.+.+...    ..+.+..     -..++++|+|..+.+.  .+
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~----~~~vG~~-----P~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA----TIPVGNT-----PTGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE----EEecCCC-----cceEEECCCCCeEEEEecCC
Confidence            43222 4568999999987766555   5777777777654322    2333322     2889999999988875  58


Q ss_pred             CeEEEEEcCCceeeecccc---CCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceeeeeCCCcccCCCCCCC
Q 001224          979 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~ 1052 (1120)
                      +.|.+.|..+....+ ...   -.-......+.++|||.++.+....   +.+.+.|..++.......+.        ..
T Consensus       182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~  252 (381)
T COG3391         182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS  252 (381)
T ss_pred             CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence            899999987776664 110   0114456788999999987766554   48999999998887652211        11


Q ss_pred             CccceEEEecCCCCCEEEEEeC-CCcEEEEecCCCC
Q 001224         1053 NVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1087 (1120)
Q Consensus      1053 ~v~~~~i~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~ 1087 (1120)
                      . .+..+..+| ++..+.+... .+.+.+-|..+..
T Consensus       253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence            1 234688999 5777766644 4888888877755

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.51  E-value=0.2  Score=56.91  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             EEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc-c
Q 001224          831 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S  908 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~  908 (1120)
                      .++.+....+... ++.+.+.+....+.   +. ..+++..|++|| ++++||.-..+|.+.|.+..-.+.+..+... .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            3445555555444 56666555433211   22 246799999999 9999999999999999876555555555433 3


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  988 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~  988 (1120)
                      .....|.|.-+...++.-  ...|.+.....                      ..+.|.-++..++...-..++|+.-.+
T Consensus       260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~  315 (410)
T PF04841_consen  260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS  315 (410)
T ss_pred             CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence            345566665443222221  22233332111                      234444444444445444577776666


Q ss_pred             ceeeecc
Q 001224          989 LECVKQW  995 (1120)
Q Consensus       989 ~~~~~~~  995 (1120)
                      .+.++..
T Consensus       316 ~~~l~~V  322 (410)
T PF04841_consen  316 HEFLQRV  322 (410)
T ss_pred             eEEEEEC
Confidence            6555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.49  E-value=0.099  Score=56.62  Aligned_cols=228  Identities=16%  Similarity=0.133  Sum_probs=109.3

Q ss_pred             EEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEEEECC
Q 001224          371 DFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSR  447 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d  447 (1120)
                      +|.+||+.||.++..||  .+.+-|+++++...                    |.... .......++|+++.++-....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence            58999998899888777  46777888887665                    22222 223356778988988777667


Q ss_pred             CeEEEEEccCCceeeeeeeecccccCeEEEEEc--CCCCceEEEEe----------------------cCCCcEEEEECC
Q 001224          448 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITC----------------------GDDKTIKVWDAT  503 (1120)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s--~d~~~~~l~s~----------------------s~d~~i~vwd~~  503 (1120)
                      ..|+--|+++.+.. .+  +.-..+-+-...|.  .|+.  .++..                      -..+.|.--|+.
T Consensus       102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen  102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            78988999997643 33  33344445445553  4555  23221                      112356666777


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEec---CC-eEEEEecCCCCCce-eee--CCCCceeEEEEcCCCCeEEe
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DG-KIKAWLYDNLGSRV-DYE--APGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg-~i~iwd~~~~~~~~-~~~--~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      +|+....+. -...+..+.|+|... ..|+-|-.   +. .-|+|-+++.+... .+.  .....+..=-|.|||..++ 
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~-  253 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW-  253 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE-
T ss_pred             CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE-
Confidence            777655544 445666777776543 34444332   22 23677666533222 111  1222334445677776322 


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  645 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  645 (1120)
                              .....+.       +.+..|.-+|+.+++........    ....+..++||++++-=+.|
T Consensus       254 --------y~~~~~~-------~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  254 --------YDSYTPG-------GQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             --------EEEEETT-------T--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             --------EEeecCC-------CCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence                    2222222       23445666677777654333221    24456667899887654443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.016  Score=65.26  Aligned_cols=175  Identities=14%  Similarity=0.100  Sum_probs=107.7

Q ss_pred             cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe---CC-CcEEEEEeecceeeEe--ecccccceEEEEEccC
Q 001224          846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSK--LKGHSKRITGLAFSHA  919 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~---~d-g~v~vwd~~~~~~~~~--l~~h~~~V~~l~~s~d  919 (1120)
                      .+.+-|.+ +.....+......+..-+|+| ++..++.-.   .. ..++++++.+++....  +.++.   ..-+|+||
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD  248 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD  248 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence            35555544 444455554555677788999 666554432   22 3599999998764433  34443   35789999


Q ss_pred             CCEEE-EEeCCCCEEEE--ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----eEEEEEcCCceee
Q 001224          920 LNVLV-SSGADSQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECV  992 (1120)
Q Consensus       920 ~~~l~-s~s~Dg~v~iW--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----~v~i~d~~~~~~~  992 (1120)
                      |+.|+ +...||...||  |+.++.  ..+ +....+      .-..-.|+|||++++...|.    .|.+++.+.+...
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~--~~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKN--LPR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCc--cee-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            98876 55667765555  555543  222 222222      22466899999999985443    5888888777653


Q ss_pred             eccccCCCCCCeeEEEECCCCcEEEEEEcC-Cc--EEEEEcCCcceee
Q 001224          993 KQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1037 (1120)
Q Consensus       993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~--v~iwd~~~~~~~~ 1037 (1120)
                      +... .+  +.-..-.|||||++++..+.. |.  |.+.|+.++....
T Consensus       320 riT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~  364 (425)
T COG0823         320 RLTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR  364 (425)
T ss_pred             Eeec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence            3322 12  112267899999999877643 44  7777777666433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.37  E-value=0.12  Score=59.51  Aligned_cols=245  Identities=13%  Similarity=0.126  Sum_probs=123.3

Q ss_pred             ceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          367 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       367 v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +....+||||++++++-+..|    +|+|.|+++|+.+.. .+                 ..  ..-..++|++|++.|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence            346789999998666656655    499999999977652 11                 11  1122399999998877


Q ss_pred             EEECCC-----------eEEEEEccCCceeeeeeeecccccC--eEEEEEcCCCCceEEEEecCC--CcEEEEECCCC--
Q 001224          443 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD--KTIKVWDATNG--  505 (1120)
Q Consensus       443 s~~~dg-----------~v~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~s~d--~~i~vwd~~~~--  505 (1120)
                      ....+.           .|..|.+.+...- ....+.+....  ...+..++|++.+++.+.+..  ..+.+-|+..+  
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~-d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSE-DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHh-CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            665332           3777787766432 11234443333  578899999996333233322  34788888765  


Q ss_pred             --ceeEEeeccccCeEEEeeccCCCceEEEEEec---CCeEEEEecCCCCCc--e-eeeCCCCceeEEEEcCCCCeEEec
Q 001224          506 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSR--V-DYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       506 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~--~-~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                        .....+......+....-+. . +.+++....   .+.|...++......  . .+..+..                 
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~-~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-----------------  325 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHH-G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-----------------  325 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEE-T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-----------------
T ss_pred             CcCCcEEEeCCCCceEEEEEcc-C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-----------------
Confidence              23333333333333222222 2 233333322   345655566554321  1 1111111                 


Q ss_pred             ccccceeEEEEcCCCCEEEEE-eCC--CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC----CCcEEE
Q 001224          578 FRKRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI  650 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i  650 (1120)
                          ......+...+++|+.. ..+  ..|+++++..+.....+.... ...|..+...+++..+.....    -+++..
T Consensus       326 ----~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~  400 (414)
T PF02897_consen  326 ----DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR  400 (414)
T ss_dssp             ----SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred             ----ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence                11111222223345543 333  358889998444455544332 223455555555554443322    356777


Q ss_pred             EEccCc
Q 001224          651 LATSDG  656 (1120)
Q Consensus       651 wd~~~~  656 (1120)
                      ||+.++
T Consensus       401 ~d~~t~  406 (414)
T PF02897_consen  401 YDLATG  406 (414)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            888776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.36  E-value=0.069  Score=57.57  Aligned_cols=234  Identities=11%  Similarity=0.127  Sum_probs=132.5

Q ss_pred             CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCc
Q 001224          767 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  846 (1120)
Q Consensus       767 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~  846 (1120)
                      ..++.|+.|+++| +.++++...                     .....     ..+...|..+.+.++-+.+++-+|+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR-----ILKLSSITQLSVLPELNLLLVLSDGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC---------------------cccee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence            4567789998888 777775110                     00000     00334499999999999999999999


Q ss_pred             EEEEEcCCCceeeee--------------cCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEeecc-----eeeEeec
Q 001224          847 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK  905 (1120)
Q Consensus       847 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~  905 (1120)
                      +.++++.........              ......+...+  -...+..+|+++. ...|.+|.....     +..+.+.
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence            999998765443311              11223344444  1122445555554 458999888753     3445554


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC-----CCCCCCcEEEEccCCcEEEEEeCCe
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQDQIHFLVVHETQ  980 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~fspdg~~la~~~d~~  980 (1120)
                      - ...+.+++|.  ++.|+.|..++ ..+.|+.++....  .........     ........+.--+++.+|++- +..
T Consensus       137 l-p~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~  209 (275)
T PF00780_consen  137 L-PDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE--LLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNI  209 (275)
T ss_pred             c-CCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE--EeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cce
Confidence            3 3678899998  55677776555 8889998754321  111111000     000111222223345666543 333


Q ss_pred             EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      -...|. .|+..+.... .-...+.++++  ...||++.+. +.|.||++.++++++.+.
T Consensus       210 g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  210 GVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333333 3433321000 11345666666  4457776654 569999999999998876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.29  E-value=0.012  Score=69.36  Aligned_cols=188  Identities=12%  Similarity=0.061  Sum_probs=104.2

Q ss_pred             CCccEEEEccCCCEEEEEe-------CC--cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001224          825 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------  887 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------  887 (1120)
                      ..+.+.+++|||+.++...       |.  .|.+++... .. ..+.. ....+.-.|+| ||..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            4678899999999888654       32  466666532 22 23321 22478889999 77777666432        


Q ss_pred             ----CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEE---EECCCcccccceeeeccCCCCCCCCC
Q 001224          888 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS  960 (1120)
Q Consensus       888 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~  960 (1120)
                          +.+.+.++..++...   ...+.|..+.|||||..++... ++.|.+   -....|+...........+-.   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                233333444333222   2345799999999999988766 467776   443444321111111111111   23


Q ss_pred             CcEEEEccCCcEEEEEeCCe--EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224          961 DTRVQFHQDQIHFLVVHETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus       961 i~~~~fspdg~~la~~~d~~--v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
                      +..+.|..++.+++...++.  +...++.... ...+.......++.+|+=+++  -++.+..+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            57899999999765544333  4444444222 111122123566777776653  344455566333

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.29  E-value=0.00032  Score=77.48  Aligned_cols=253  Identities=15%  Similarity=0.176  Sum_probs=151.8

Q ss_pred             CCCccEEEEccCCC--EEEEEe-CCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEe----CCCcEEEEE
Q 001224          824 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN  894 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~--~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd  894 (1120)
                      ...+.|++..-+..  .+++|. +|.|.+-......-  ....+++....++++|++-|...||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34456666554433  566776 79888887764322  2345567788999999998888999884    456899999


Q ss_pred             eecc--e--eeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-
Q 001224          895 VRVD--E--VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-  968 (1120)
Q Consensus       895 ~~~~--~--~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-  968 (1120)
                      +.++  -  ....|.+ -.....+++|-.|.+++.+|...+.+.++|++....... .+++        ..+..+..+| 
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF  206 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence            9876  1  1122222 334466889998999999999999999999874211111 1111        1356677888 


Q ss_pred             CCcEEEEEeCCeEEEEEc-CCce-eeeccccCC--CCCCeeEEEECCCCc-EEEEEEcC-CcEEEEEcCCc------cee
Q 001224          969 DQIHFLVVHETQLAIFET-TKLE-CVKQWVPRE--SSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAANL------KLR 1036 (1120)
Q Consensus       969 dg~~la~~~d~~v~i~d~-~~~~-~~~~~~~~~--h~~~v~~l~~s~dg~-~l~s~~~D-g~v~iwd~~~~------~~~ 1036 (1120)
                      .+.|++...|+.|.+||. .+-+ .+..+.-..  -...+..++|.|-.. .|++...| ++|+.+|+..-      +..
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~  286 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS  286 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence            788999988999999993 3322 222221110  123489999999543 45555544 78999987421      111


Q ss_pred             eeeCCCcccCCCCCC--CCccceEEEecCCC-CCEEEEEeCCCcEEEEecCCCC
Q 001224         1037 CRINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1037 ~~~~~~~~~~~g~~~--~~v~~~~i~~~p~d-~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ..+......|-.|.+  ..|.  ...||+.+ -....++-..-+..-+++.+.-
T Consensus       287 ~~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e~~  338 (783)
T KOG1008|consen  287 VFVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHEEV  338 (783)
T ss_pred             ceeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchhhe
Confidence            111112211222222  2233  56667654 2334555555566656655433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.12  E-value=0.13  Score=55.30  Aligned_cols=221  Identities=13%  Similarity=0.090  Sum_probs=125.6

Q ss_pred             EEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec--
Q 001224          830 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--  905 (1120)
Q Consensus       830 l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--  905 (1120)
                      ..|.++...|+-..  .+.|.-|+..+++. ..+... ..+.++..-. .+..|+++  +.-+++++..++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEeccc
Confidence            34666777666555  68899999876543 333322 2334443333 33344433  2346677766555432221  


Q ss_pred             --c-cccceEEEEEccCCCEEEEEeC-----C----CCEEEEECCC-cccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          906 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       906 --~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                        + ....-+.+...|+|.+.++...     .    ..-.+|.++. +.     ..+...++.   ..-..++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~---~~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDL---TIPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcE---EecCceEECCCCCE
Confidence              1 1244567888899887775444     0    1124555552 21     111222211   13378999999988


Q ss_pred             EEEE--eCCeEEEEEcCC--cee---eeccccCCCCCCeeEEEECCCCcEEEEEEcCC-cEEEEEcCCcceeeeeCCCcc
Q 001224          973 FLVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus       973 la~~--~d~~v~i~d~~~--~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
                      |..+  ..+.|.-|++..  +..   ..........+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+.    
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----  251 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----  251 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----
Confidence            8775  447788777652  211   11122223356677788888888876555554 89999988 99998888    


Q ss_pred             cCCCCCCCCccceEEEecCCCCCEEEEEeC
Q 001224         1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1074 (1120)
Q Consensus      1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~ 1074 (1120)
                      +|.      ..+..++|--.+.+.|.+.+.
T Consensus       252 lP~------~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         252 LPV------KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCC------CCCccceEeCCCcCEEEEEec
Confidence            442      123367776545566555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.07  E-value=0.22  Score=53.66  Aligned_cols=226  Identities=12%  Similarity=0.122  Sum_probs=126.1

Q ss_pred             ccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee--------
Q 001224          833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--------  904 (1120)
Q Consensus       833 s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--------  904 (1120)
                      ...++.|+.|.++.+.+++........... +...|..+...| +-+.|++-+ |+.++++++.........        
T Consensus         4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            346788999995449999993322222222 223499999999 544554443 599999998764433211        


Q ss_pred             ------cccccceEEEE--EccCC-CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          905 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       905 ------~~h~~~V~~l~--~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                            ......+...+  -...+ ..|+.+ ....|.+|.............+...-.    ..+..++|.  +..+++
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp----~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP----DPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC----CCcEEEEEe--CCEEEE
Confidence                  11122333333  11233 344444 455899998876422110111111111    367888888  667788


Q ss_pred             EeCCeEEEEEcCCceeeeccccCCC----------CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee--eeCCCc
Q 001224          976 VHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSA 1043 (1120)
Q Consensus       976 ~~d~~v~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~--~~~~~~ 1043 (1120)
                      +..+...+.|+.++.....+.....          ..++..+.. +++.+|++-  |..-.+.|. .|+..+  .+.   
T Consensus       154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~---  226 (275)
T PF00780_consen  154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ---  226 (275)
T ss_pred             EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE---
Confidence            8788899999997766544322111          223444444 346777643  333333343 444332  222   


Q ss_pred             ccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                       ..       ..|.++++..   .+|+..+. +.|.||++.+++
T Consensus       227 -W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  227 -WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             -cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence             11       1244677763   46666665 559999999997

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.07  E-value=0.031  Score=66.69  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             CCcEEEEE-eCCCcEEEEEeecceeeEeecccccc-eEEEEEcc-----CCCEEEEEeCCCCEEEEECCCcccccceeee
Q 001224          877 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  949 (1120)
Q Consensus       877 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~  949 (1120)
                      +.++|..- .....|+-.|+..|+.+..+..|... |..++-..     ....-..|-.+..+..||.+-..   ..+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence            44444443 35578999999999999999988754 55443321     12234556677889999988632   11121


Q ss_pred             ccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          950 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       950 ~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      .............|++-+.+|...+.+.+|.|++||-. |...++.. ++-..+|.+|..+.||+||++.+ +..+.+++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            11111112235678888888877777899999999953 43334433 25578999999999999988766 66777777


Q ss_pred             c
Q 001224         1030 A 1030 (1120)
Q Consensus      1030 ~ 1030 (1120)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.07  E-value=0.032  Score=61.59  Aligned_cols=179  Identities=12%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             CCEEEEEeC-----------CcEEEEEcCCC----ceeeee--cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          836 DSYVMSASG-----------GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       836 ~~~l~~~sd-----------g~i~vwd~~~~----~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      ..++++|..           |.|.++++...    ..+..+  ....++|++++--  +++ |+++. ++.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence            467887731           77999999873    122221  2246778888876  455 44333 579999999987


Q ss_pred             e-eeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-
Q 001224          899 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  975 (1120)
Q Consensus       899 ~-~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-  975 (1120)
                      + ....-.- ....++++...  +++++.|+....+.++..+..........+...     ...++++.|-+++..+++ 
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~-----~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQ-----PRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS------BEEEEEEEE-SSSEEEEE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCC-----CccEEEEEEecCCcEEEEE
Confidence            7 4332221 22245555554  669999999888998866542111111111111     135788888866655555 


Q ss_pred             EeCCeEEEEEcCCc-----------eeeeccccCCCCCCeeEE---EECCC--Cc------EEEEEEcCCcEEEE
Q 001224          976 VHETQLAIFETTKL-----------ECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1028 (1120)
Q Consensus       976 ~~d~~v~i~d~~~~-----------~~~~~~~~~~h~~~v~~l---~~s~d--g~------~l~s~~~Dg~v~iw 1028 (1120)
                      -.+|.+.++.....           .....+.   ....|+++   ++.|.  +.      .++.++.+|.|.+.
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            47899999887631           1222222   25678887   55552  22      37778899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.05  E-value=0.1  Score=52.75  Aligned_cols=234  Identities=15%  Similarity=0.107  Sum_probs=134.8

Q ss_pred             cEEEEccCCCE-EEEEe-CCc-EEEEEcCCCceeeeecCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001224          828 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  897 (1120)
Q Consensus       828 ~~l~~s~d~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~  897 (1120)
                      ..++++|.-.. ++.+- -|+ ..++|..+.+...++...++.  --.=.||| ||++|...-.|     |.|-|||...
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence            34677765443 33444 344 678898887776665433322  12236999 89988865443     6899999875


Q ss_pred             c-eeeEeecccccceEEEEEccCCCEEEEEeCC------------------CCEEEEECCCcccccceeeeccCCCCCCC
Q 001224          898 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       898 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~  958 (1120)
                      + +.+..+..|.-.-..+.|.+||+.|+.+...                  -++.+-|..+|+...+..+.....+    
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----  225 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----  225 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence            3 4567777787777789999999999876431                  1233334333333222222211111    


Q ss_pred             CCCcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceeeeccccC-----CCCCCeeEEEECCCCcEEEEEEc-CCcEE
Q 001224          959 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL-DATVC 1026 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~-~d~-----~v~i~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~ 1026 (1120)
                      .+|..++..+||..++.+ ..|     --.+=-...++.+.-+...     .....|-+|+...+..+++..+- .+...
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            367888888888877763 221     1111111222222221110     12456788888877777665554 45688


Q ss_pred             EEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1027 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1027 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      |||..+|+.+....    +++-      .  .++-   ...-+++.+.+|.+.++
T Consensus       306 i~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~  345 (366)
T COG3490         306 IWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEec
Confidence            99999999986543    2221      1  1222   23345555567887766

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.05  E-value=0.016  Score=69.18  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=96.7

Q ss_pred             CCceEEEEecCCCcEEEEECCCCceeEEeeccccC-eEEEeeccC---CCceEEEEEecCCeEEEEecCCCCCceee-eC
Q 001224          483 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDY-EA  557 (1120)
Q Consensus       483 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~  557 (1120)
                      .+.++|........|+-.|+..|+.+..+..|... |..++-...   -+..-.+.|-.+..+..||.+-.+..... ..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34435555566788999999999999999887754 766653211   01234566777899999999864421110 00


Q ss_pred             CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                      +                 ...+...+.|++-+.+| ++|+|+.+|.||+||--..+....+.+-+  .+|..+..+.||+
T Consensus       572 k-----------------~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk  631 (794)
T PF08553_consen  572 K-----------------QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK  631 (794)
T ss_pred             c-----------------ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence            0                 00112244455444444 59999999999999954333333343333  4799999999999


Q ss_pred             EEEEEECCCcEEEEEc
Q 001224          638 LLAVSTNDNGIKILAT  653 (1120)
Q Consensus       638 ~l~~~~~dg~i~iwd~  653 (1120)
                      ++++.+. ..+.+++.
T Consensus       632 wilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  632 WILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEEeec-ceEEEEEE
Confidence            9887664 57777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.05  E-value=0.16  Score=58.55  Aligned_cols=239  Identities=12%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             ccEEEEccCCCEEEEEe--CC----cEEEEEcCCCceeeee-cCCCCCeEEEEEecCCCcEEEEEe-CC----------C
Q 001224          827 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S  888 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~-~d----------g  888 (1120)
                      +....+||||+++|.+-  .|    .|+++|+.+++.+... ..  .....+.|.+ |++.|+... .+          .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence            34678999999999773  34    4999999998766432 21  1123499999 655554443 22          2


Q ss_pred             cEEEEEeeccee--eEeecccccc--eEEEEEccCCCEEEEEeC-C---CCEEEEECCCc--ccccceeeeccCCCCCCC
Q 001224          889 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGA-D---SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       889 ~v~vwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~-D---g~v~iWd~~~~--~~~~~~~~~~~~~~~~~~  958 (1120)
                      .|+.|.+.+...  ...+......  ...+..++|+++|+.... .   ..+.+-++..+  ......++.....     
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-----  277 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-----  277 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-----
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-----
Confidence            377777766432  2334443333  567889999999774332 2   23667777764  1112222222111     


Q ss_pred             CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCcee---eeccccCCCCC--CeeEEEECCCCcEE-EEEEcCC--cEE
Q 001224          959 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1026 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l-~s~~~Dg--~v~ 1026 (1120)
                       .+....-+.++.+++.+    .++.|.-.++.....   ...+.  .|..  .+..+..  .+.+| +....++  .|+
T Consensus       278 -~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  278 -GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             -S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred             -ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence             23333333355444443    345777778776653   11222  3344  3444444  44444 4444554  488


Q ss_pred             EEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC---CcEEEEecCCCC
Q 001224         1027 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1087 (1120)
Q Consensus      1027 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1087 (1120)
                      ++++..+.....+.    ++..   ..+.  .+...+....+.++.++-   ++++.+|+.+++
T Consensus       353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            99998444444444    2211   1122  344444333444444332   578888888877

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.23  Score=53.42  Aligned_cols=230  Identities=13%  Similarity=0.068  Sum_probs=130.7

Q ss_pred             EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeE
Q 001224          371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV  450 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v  450 (1120)
                      .|.|++..|+.+.-..+.|+-|+..+++...                    +. +.+.+.++..-.++..|+++.  .-+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g~   87 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HGV   87 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--ccc
Confidence            4677777778887788999999998775432                    11 223445555545555555543  336


Q ss_pred             EEEEccCCceeeeeeeec-cc-ccCeEEEEEcCCCCceEEEEecC------C---CcEEEEECC-CCceeEEeeccccCe
Q 001224          451 QIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAPV  518 (1120)
Q Consensus       451 ~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~s~------d---~~i~vwd~~-~~~~~~~~~~h~~~v  518 (1120)
                      .+++.+++..+....... +. ...-+.+...|+|.  +.++...      +   ..-.+|-+. .+..++.+..+-..-
T Consensus        88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~  165 (307)
T COG3386          88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence            677776665423222221 22 23567888899998  3333222      0   112455544 567777666666666


Q ss_pred             EEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          519 YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      +.++|+++.  +.++.+. ..+.|..|++......    .... ...         .......+....++.+.+|++.++
T Consensus       166 NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw~~  229 (307)
T COG3386         166 NGLAFSPDG--KTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLWVA  229 (307)
T ss_pred             CceEECCCC--CEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEEEe
Confidence            788986654  4555554 4578888877631100    0000 000         111111123334566677776655


Q ss_pred             EeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224          598 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  644 (1120)
Q Consensus       598 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  644 (1120)
                      +..+| .|.+|+.+ |+.+..+....  ..+++++|-- +.+.|.+.+.
T Consensus       230 a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         230 AVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             cccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence            44444 99999998 89888887663  3577788854 5555555443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.03  E-value=0.16  Score=56.07  Aligned_cols=223  Identities=13%  Similarity=0.079  Sum_probs=120.6

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC----CCeEEEEEC----------CCeEEE
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS----------RHIVQI  452 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~~~----------dg~v~i  452 (1120)
                      ..|++.|..+.+.+....+.-               ..+-..+..+.|..+    ..+|++|+.          .|.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            467888888888776554431               111123334444433    578888753          289999


Q ss_pred             EEccCC----ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeec-cccCeEEEeeccC
Q 001224          453 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEG-HEAPVYSVCPHHK  526 (1120)
Q Consensus       453 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~~~~  526 (1120)
                      +++...    ..++.... ....++|++++-- .+.  ++++.  .+.|.+|++...+ ....-.. ....+.++...  
T Consensus        67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--  138 (321)
T ss_dssp             EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred             EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence            999984    23433322 2357889998866 333  33333  4789999998887 4433221 22356666542  


Q ss_pred             CCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEE
Q 001224          527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  606 (1120)
Q Consensus       527 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  606 (1120)
                      .  ++++.|...+.+.++.++.....         ..-++-....         ..+..+.+-++++.++++..+|.+.+
T Consensus       139 ~--~~I~vgD~~~sv~~~~~~~~~~~---------l~~va~d~~~---------~~v~~~~~l~d~~~~i~~D~~gnl~~  198 (321)
T PF03178_consen  139 K--NYILVGDAMKSVSLLRYDEENNK---------LILVARDYQP---------RWVTAAEFLVDEDTIIVGDKDGNLFV  198 (321)
T ss_dssp             T--TEEEEEESSSSEEEEEEETTTE----------EEEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred             c--cEEEEEEcccCEEEEEEEccCCE---------EEEEEecCCC---------ccEEEEEEecCCcEEEEEcCCCeEEE
Confidence            2  48888988888887755442211         1111111111         13344444434457889999999999


Q ss_pred             EECCC-------C--ceeEEEecCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEEc
Q 001224          607 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       607 wd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iwd~  653 (1120)
                      +....       +  +.......+-+ ..|+++   ++.|  .+      ..++.++.+|.|.+.-.
T Consensus       199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p  264 (321)
T PF03178_consen  199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP  264 (321)
T ss_dssp             EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred             EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence            87752       1  22222222222 245555   4445  22      24888889999985433

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.003  Score=70.29  Aligned_cols=94  Identities=18%  Similarity=0.434  Sum_probs=71.7

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE-EEEEcCCCCeEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG  442 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~la  442 (1120)
                      ...|.-+.|+|.-. |+|++..+|.|.+..+. .+++       |+            +.-|...++ +++|.|||+.||
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEE
Confidence            45677899999988 79999999999998876 4443       33            222455566 999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  480 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  480 (1120)
                      +|-.||+|++-|++++..+...  +..-...|.++-|+
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            9999999999999998766421  12234567777775

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.99  E-value=0.18  Score=56.16  Aligned_cols=93  Identities=18%  Similarity=0.283  Sum_probs=61.3

Q ss_pred             EEEEcCCCCeEEEEECCCeEEE---EEccC-C----c-eeeeeeeecccc-cCeEEEEEcCC---C------CceEEEEe
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G----D-EVRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC  491 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~i---wd~~~-~----~-~~~~~~~l~~h~-~~V~~v~~s~d---~------~~~~l~s~  491 (1120)
                      .++.+|++++||.+..+..+.+   |+... +    . .+.....+.... ..|+++.+-|=   .      ...+++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4688999999999988887666   64421 1    1 111112222221 46777666432   1      11289999


Q ss_pred             cCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          492 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       492 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      ..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            9999999999 6888776666688888888653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.019  Score=62.64  Aligned_cols=207  Identities=12%  Similarity=0.131  Sum_probs=117.5

Q ss_pred             CCceEEEEEcC-CCCeEEEEECC------CeEEEEEccCCceeee----eeeecccccCeE-EEEEcCCCCceEEEEecC
Q 001224          426 GVSVNRVIWSP-DGSLFGVAYSR------HIVQIYSYHGGDEVRQ----HLEIDAHVGGVN-DIAFSHPNKQLCVITCGD  493 (1120)
Q Consensus       426 ~~~V~~l~~sp-dg~~las~~~d------g~v~iwd~~~~~~~~~----~~~l~~h~~~V~-~v~~s~d~~~~~l~s~s~  493 (1120)
                      .+.|.++++.. +..+|+.+...      ..|-|+.-+.|-+++.    .....+|+-.-. .|-...+ ..+++.++..
T Consensus       276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~d-snlil~~~~~  354 (644)
T KOG2395|consen  276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRAD-SNLILMDGGE  354 (644)
T ss_pred             hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccc-cceEeeCCCC
Confidence            34677788875 56677766542      3333443322222210    001112221111 1222233 3346777888


Q ss_pred             CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEE-----EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224          494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  568 (1120)
Q Consensus       494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  568 (1120)
                      ...++--|++.|+.+..+.-|.. |.-+.+.++..+..+     +.|-.|..|.-||.+-...-           .+++.
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----------kl~~~  422 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----------KLAVV  422 (644)
T ss_pred             cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----------eeeee
Confidence            88899999999999999987766 655666555544433     33455788999998743321           00110


Q ss_pred             CCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001224          569 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI  648 (1120)
Q Consensus       569 ~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  648 (1120)
                      . + +-|  .++....|.+-..+ .++++||.+|.|++||--..+....+++-+.  .|..+..+.||+++++.+ +..+
T Consensus       423 q-~-kqy--~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc-~tyL  494 (644)
T KOG2395|consen  423 Q-S-KQY--STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKWILATC-KTYL  494 (644)
T ss_pred             e-c-ccc--ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcEEEEec-ccEE
Confidence            0 0 000  01113333333333 3699999999999999833333344444433  789999999999988655 4566


Q ss_pred             EEEEc
Q 001224          649 KILAT  653 (1120)
Q Consensus       649 ~iwd~  653 (1120)
                      .+.++
T Consensus       495 lLi~t  499 (644)
T KOG2395|consen  495 LLIDT  499 (644)
T ss_pred             EEEEE
Confidence            66664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.15  Score=51.58  Aligned_cols=238  Identities=17%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             EEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-----CcEEEEEccCcchhhhhcccccc
Q 001224          595 FLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       595 l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      ++.+-.-|+ ..++|....+...++....+....-.=.|||||.+|...-+|     |.|-+||...+...+-.+..|..
T Consensus        83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi  162 (366)
T COG3490          83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI  162 (366)
T ss_pred             EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc
Confidence            333444443 567888777766666433322222235799999999987543     78999998866554444443322


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee--------eecccC
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV--------WKLTEL  740 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v--------w~~~~~  740 (1120)
                      ..                                         .++...+|+..++.+..  -|..        .+++.+
T Consensus       163 Gp-----------------------------------------Hev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM  199 (366)
T COG3490         163 GP-----------------------------------------HEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM  199 (366)
T ss_pred             Cc-----------------------------------------ceeEEecCCcEEEEeCC--ceecccccCccccchhhc
Confidence            21                                         12333456666655442  1111        122222


Q ss_pred             CCC---------ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccC-CCCccccccCceeecCCC
Q 001224          741 SEP---------NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPS  810 (1120)
Q Consensus       741 ~~~---------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~w~~~~  810 (1120)
                      +..         ..+....+|...+.-.|..++..+||+.++.+--.|.-       .+.. .-+.......++..+...
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~-------~d~ppLvg~~~~g~~l~~~~~pe  272 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR-------NDLPPLVGHFRKGEPLEFLDLPE  272 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC-------ccCCcceeeccCCCcCcccCCCH
Confidence            211         11122233333355667777887777743332211110       0000 000000000111122111


Q ss_pred             CCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224          811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS  888 (1120)
Q Consensus       811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg  888 (1120)
                      .+...       ....|-+++.+.+..+++..+  .+...+||..++..+..-.-  .....++-..  + =+++.+.+|
T Consensus       273 e~~~~-------~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~--~-gf~vssg~G  340 (366)
T COG3490         273 EQTAA-------FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAK--G-GFAVSSGQG  340 (366)
T ss_pred             HHHHH-------HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceecc--C-ceEEecCCc
Confidence            11111       235677899988778888777  56789999999987654321  1223333332  2 244455678


Q ss_pred             cEEEEE
Q 001224          889 SIQIYN  894 (1120)
Q Consensus       889 ~v~vwd  894 (1120)
                      .+.++.
T Consensus       341 ~~~~~s  346 (366)
T COG3490         341 RIIFYS  346 (366)
T ss_pred             eEEecc
Confidence            888774

>smart00320 WD40 WD40 repeats

Probab=96.84  E-value=0.0026  Score=43.81  Aligned_cols=39  Identities=33%  Similarity=0.559  Sum_probs=34.4

Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      ++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.0053  Score=68.39  Aligned_cols=95  Identities=9%  Similarity=0.134  Sum_probs=77.4

Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224          865 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  943 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~  943 (1120)
                      ...|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34688899999 88899999999999999988 777888887888888 9999999999999999999999999997654


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEcc
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      .......       ...|.++.|++
T Consensus        98 ~~~~~s~-------e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSV-------ETDISKGIWDR  115 (665)
T ss_pred             ecccccc-------ccchheeeccc
Confidence            4331111       13567777763

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.043  Score=65.25  Aligned_cols=99  Identities=19%  Similarity=0.276  Sum_probs=70.5

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  458 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~  458 (1120)
                      +++.|+..|.|...|+...-...     .|             -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            58889988999988886531100     00             1224579999999999999999999999999999998


Q ss_pred             ceeeeeeeeccccc---CeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224          459 DEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       459 ~~~~~~~~l~~h~~---~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~  502 (1120)
                      +.++.   +..|..   .|..+.+..++.  .++++...|.  +|.+
T Consensus       163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence            87763   333433   344445555555  5788877776  6654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.043  Score=60.10  Aligned_cols=144  Identities=10%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             EEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCE--E-----EEEeCCCCEEEEECCCcccccceeeeccC
Q 001224          880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT  952 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~  952 (1120)
                      +|..+.....++-.|+..|+.+..+.-|.. |+-+.+.|+.+.  |     +.|=.|..|.-||.+-....   .+...+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence            444555566888889999999999998877 888888887532  2     23556788999998743221   222223


Q ss_pred             CCCCC-CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          953 GRTPT-AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       953 ~~~~~-~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      ++.=. .....|.+-..+|..++.+.+|.|++||. .+...++..+ +-..+|..|..+.||++|++.+ +.++.+-++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            32211 12345666666776666679999999998 5655555443 6688999999999999988665 566666664

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.51  E-value=0.15  Score=44.36  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             ceEEEEec---CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          367 PMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       367 v~~v~~sp---dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      |++|++..   ||+.-|++|+.|..|+||+-+  +.+.+                    ..-.+.|++++-... .+++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence            56666655   565669999999999999854  23321                    113457888877766 67999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEc---CCCCceEEEEecCCCcEE
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK  498 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~s~d~~i~  498 (1120)
                      +-.+|+|-+|+-...  +.   ..+. ...+.++++.   .||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~R--lW---RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQR--LW---RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcce--ee---eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            999999999976432  21   1222 2235555443   33433 478887787763

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.43  E-value=1.7  Score=48.63  Aligned_cols=83  Identities=7%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE-EEEEecCC----------------Cc-EEEE
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQD----------------NN-IIAI  883 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~sp~d----------------~~-~las  883 (1120)
                      ....+.+++.+|++++.|+.+ -|.|.++|+.++..++.+++-.+.-. -+......                .. +++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            445688999999998888876 49999999999988887776443211 11111100                11 3344


Q ss_pred             EeCCCcEEEEEeecceeeEeec
Q 001224          884 GMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       884 g~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      +-.-|.|.||+++.|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            5567889999988877665543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.42  E-value=3.7  Score=50.25  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=115.4

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeeccccc------CeEEEEEc----------------CCCCceEEEEecCCC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFS----------------HPNKQLCVITCGDDK  495 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~------~V~~v~~s----------------~d~~~~~l~s~s~d~  495 (1120)
                      +..|..++.++.|.-.|.++|+.+-.... .....      .-..+++-                ..+.  .++.++.|+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence            55677777788888888888886643211 11000      01112221                1233  477788899


Q ss_pred             cEEEEECCCCceeEEeeccccCeE-------------EEeeccCCCceEEEEEec----------CCeEEEEecCCCCCc
Q 001224          496 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR  552 (1120)
Q Consensus       496 ~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~  552 (1120)
                      .+.-.|.++|+.+..+.. .+.|.             .+.-.+--.+..++.|+.          +|.|+-+|..+++..
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999999877642 22221             000000001135555542          588999999999988


Q ss_pred             eeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE------------------eCCCeEEEEECCCCce
Q 001224          553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL  614 (1120)
Q Consensus       553 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~  614 (1120)
                      ..+..........  .+.|. .+.......-...+++++...++.+                  ...+.|.-.|.+||+.
T Consensus       350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            8765321111100  01121 1211111111223444443333221                  1245677889999998


Q ss_pred             eEEEecCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEccCcc
Q 001224          615 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       615 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~  657 (1120)
                      ...++...|.       ....-+.+.. +|+   .++.++.+|.+.++|..+++
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            8877653221       0011122322 553   78999999999999999994

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.40  E-value=1.3  Score=48.84  Aligned_cols=243  Identities=14%  Similarity=0.126  Sum_probs=119.7

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCce---eeee----cCCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD--------  887 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d--------  887 (1120)
                      ..++|+|.|||+.+++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999888876699999999 33333   2222    223456899999992   24444433321        


Q ss_pred             CcEEEEEeecc-------e-eeEeecc---cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc-CCCC
Q 001224          888 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRT  955 (1120)
Q Consensus       888 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~  955 (1120)
                      ..|.-|....+       + ++..+..   ....-..|+|.|||.+.++.+..+.-  -...........++... .+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~~~~~~~~~~G~ilri~~dG~~  159 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--DNAQDPNSLRGKILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--GGGCSTTSSTTEEEEEETTSSB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--ccccccccccceEEEecccCcC
Confidence            23444444432       1 1112222   12234569999999877777654430  00000000011111111 1110


Q ss_pred             ------------C------CCCCCcEEEEccC-CcEEEE--EeCCeEEEEEcCCceee----------------------
Q 001224          956 ------------P------TAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV----------------------  992 (1120)
Q Consensus       956 ------------~------~~~~i~~~~fspd-g~~la~--~~d~~v~i~d~~~~~~~----------------------  992 (1120)
                                  .      .......++|.|. |.+.++  +.+..=.|..+..|.-.                      
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        0      0013467899999 877776  44433233223222110                      


Q ss_pred             -----eccccCCCCCCeeEEEECC-------CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224          993 -----KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus       993 -----~~~~~~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
                           ..+.. .+...+..+.|-.       .|.++++.-..+.|....+.++..+....  .++ .   .....++.++
T Consensus       240 ~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~v~  312 (331)
T PF07995_consen  240 PGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRDVA  312 (331)
T ss_dssp             TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEEEE
T ss_pred             CCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceEEE
Confidence                 00111 1345677777754       45566666556678888876553332211  111 1   1112466899


Q ss_pred             ecCCCCCEEEEEeCCCcEE
Q 001224         1061 AHPQEPNEFALGLSDGGVH 1079 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg~v~ 1079 (1120)
                      +.| ||.+.++.+.+|.|.
T Consensus       313 ~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EET-TSEEEEEE-TTTTEE
T ss_pred             EcC-CCeEEEEECCCCeEe
Confidence            999 688888888888874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.33  E-value=0.21  Score=43.52  Aligned_cols=66  Identities=14%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             eEEEEE---cCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224          474 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  546 (1120)
Q Consensus       474 V~~v~~---s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  546 (1120)
                      |++|++   ..||.. -|+.|+.|..||+|+  ..+.+..+. ..+.|.+++-...   ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence            455554   445555 799999999999997  346667776 4566777774332   46888888999988864

>PHA02713 hypothetical protein; Provisional

Probab=96.32  E-value=0.31  Score=57.94  Aligned_cols=227  Identities=12%  Similarity=0.073  Sum_probs=115.3

Q ss_pred             cEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEeecce--eeEeecccccceEEEE
Q 001224          846 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA  915 (1120)
Q Consensus       846 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~--~~~~l~~h~~~V~~l~  915 (1120)
                      .+..||..+.+-.  ..+..... -.+++. - ++.++++|+.+      ..+..||..+++  .+..+.........+ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence            4667777654322  22221111 122333 3 67788888854      247788877653  222232222222222 


Q ss_pred             EccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC-----------
Q 001224          916 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------  978 (1120)
Q Consensus       916 ~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d-----------  978 (1120)
                       .-+|+..+.||.++     ++..||..+.+-.   .+.......   .. .++ ..-+|+..+.| .+           
T Consensus       349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~---~~~~mp~~r---~~-~~~-~~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK---MLPDMPIAL---SS-YGM-CVLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             -EECCEEEEECCcCCCCCCceEEEEECCCCeEE---ECCCCCccc---cc-ccE-EEECCEEEEEeCCCccccccccccc
Confidence             23677888888764     3778888764321   111111110   01 111 22356666664 22           


Q ss_pred             ------------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC------CcEEEEEcCC-cceeeee
Q 001224          979 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1039 (1120)
Q Consensus       979 ------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------g~v~iwd~~~-~~~~~~~ 1039 (1120)
                                  ..+..||..+.+-...-...  ......-+..-+|+..+.|+.+      ..|..||..+ .+-...-
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                        24778888776543222111  1111111223367777777654      2467888887 4443211


Q ss_pred             CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCCCC
Q 001224         1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDNGS 1100 (1120)
Q Consensus      1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~p~~~~~ 1100 (1120)
                      .    ++..     .....++-.  ++.+.++|+.||  ++..+|+.+.+  |..-.|--..+
T Consensus       498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~  547 (557)
T PHA02713        498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS  547 (557)
T ss_pred             c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence            1    2211     111123333  578999999998  77788887766  88777654443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.32  E-value=0.8  Score=47.13  Aligned_cols=199  Identities=13%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                      +-...+.++.|+|+.+.|++........|+=.                      .+|.++....-.  .-.....+.+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~--g~~DpE~Ieyig  138 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLT--GFSDPETIEYIG  138 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEeccc--ccCChhHeEEec
Confidence            34556999999999999999888766555421                      334433322111  244566788888


Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeee----------ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---e
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMAT----------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V  900 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~----------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~  900 (1120)
                      +|+++++-- ++.+.++.+.....+..          ..........++|+| ....|..+-+-.=+.||.+..+.   .
T Consensus       139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence            888887776 78888887765432211          111245678899999 55555556666677777765332   1


Q ss_pred             eEeecccc-------cceEEEEEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC---CCCCCcEEEEccC
Q 001224          901 KSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP---TAQSDTRVQFHQD  969 (1120)
Q Consensus       901 ~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~fspd  969 (1120)
                      ++....+.       ..|.++.|.+. +.+|+-+.+++.+.-.|....-.   ..+....|..+   .......++..++
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~  294 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD  294 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence            11112222       34677888754 56777777888887777765432   12222222221   1123467788888


Q ss_pred             CcEEEEEeCCeE
Q 001224          970 QIHFLVVHETQL  981 (1120)
Q Consensus       970 g~~la~~~d~~v  981 (1120)
                      |.+.+++.-+-.
T Consensus       295 g~lYIvSEPnlf  306 (316)
T COG3204         295 GNLYIVSEPNLF  306 (316)
T ss_pred             CCEEEEecCCcc
Confidence            876666544433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.24  E-value=0.52  Score=55.88  Aligned_cols=234  Identities=9%  Similarity=0.091  Sum_probs=129.4

Q ss_pred             cCCCEEEEEe-C------CcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001224          834 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD  898 (1120)
Q Consensus       834 ~d~~~l~~~s-d------g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~  898 (1120)
                      ..+..+++|+ +      ..+..+|..++.-.  ..+. ....-.++++.  ++.+.++|+.| |     .+..||..++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3455666665 4      34888888765332  2232 22234455555  56888999988 3     5677887764


Q ss_pred             e--eeEeecccccceEEEEEccCCCEEEEEeCCCC-----EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224          899 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  971 (1120)
Q Consensus       899 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~  971 (1120)
                      +  .+..+...........+  +|...|.||.||.     |-.||..+.+-.....+...        .-..-+..-+|+
T Consensus       360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~  429 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK  429 (571)
T ss_pred             ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence            3  33333333332222222  6888899999974     66777766432211111110        111223334666


Q ss_pred             EEEEE-eC------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCc-----EEEEEcCCcceeeee
Q 001224          972 HFLVV-HE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRI 1039 (1120)
Q Consensus       972 ~la~~-~d------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~iwd~~~~~~~~~~ 1039 (1120)
                      ..++| .+      ..+..||..++.....-....-... ..++ .-++...+.|+.|+.     |..||..+.+-...-
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence            66663 23      3688999888765443322111111 1122 336788888887763     788888887665431


Q ss_pred             CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCC
Q 001224         1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1095 (1120)
Q Consensus      1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~p 1095 (1120)
                      .    .+..     .....++-.  ++.+.++|+.||     +|..||+.+.+  |....+
T Consensus       508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence            1    1111     111122222  578888998887     67778777755  776655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.23  E-value=0.65  Score=49.60  Aligned_cols=159  Identities=9%  Similarity=0.026  Sum_probs=79.5

Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  942 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~  942 (1120)
                      .-.+.+..+..++ |+++++++.......-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+......
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3456788888888 89999887654444566643211111222345789999999998776644 788787766221111


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc-cCCCCCCeeEEEECCCCcEEEEEEc
Q 001224          943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                      .-....  . ........+..++|.+++...|++..|.+. ...+.|+--..-. ...-...++.|.|.++.+-++.| .
T Consensus       220 ~w~~~~--~-~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~  294 (302)
T PF14870_consen  220 TWSEPI--I-PIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q  294 (302)
T ss_dssp             EE---B----TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             cccccc--C-CcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence            000000  0 001111347899999999999988887553 3444443322211 11225678899998776666655 6


Q ss_pred             CCcEEEE
Q 001224         1022 DATVCVF 1028 (1120)
Q Consensus      1022 Dg~v~iw 1028 (1120)
                      +|.+--|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            8877554

>smart00320 WD40 WD40 repeats

Probab=96.22  E-value=0.0091  Score=40.90  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=32.8

Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      +....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            44566677888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.21  E-value=0.79  Score=48.21  Aligned_cols=148  Identities=16%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             CCccEEEEccCCCEEEEEe--CCc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-eecce
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~  899 (1120)
                      ..+.+.++++|++.+|...  ++.  ++++...  ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence            3688999999999887765  544  5555443  3333322 233688889999 677777777677777764 23332


Q ss_pred             ee-Eeecc--cccceEEEEEccCCCEEEEEe---CCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEccCCcE
Q 001224          900 VK-SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       900 ~~-~~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fspdg~~  972 (1120)
                      .. ..+..  -...|+++.+||||..+|...   .++.|.|=-+..........+..... .......++.+.|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            21 11211  112899999999999887655   35667766655432221111111111 1111247899999999998


Q ss_pred             EEEE
Q 001224          973 FLVV  976 (1120)
Q Consensus       973 la~~  976 (1120)
                      ++.+
T Consensus       180 ~V~~  183 (253)
T PF10647_consen  180 VVLG  183 (253)
T ss_pred             EEEe
Confidence            8874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=96.20  E-value=2.7  Score=51.35  Aligned_cols=196  Identities=10%  Similarity=0.034  Sum_probs=100.8

Q ss_pred             CCccEEEEccCCCEEEEEeC--C----cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-C-----CcEEE
Q 001224          825 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI  892 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d-----g~v~v  892 (1120)
                      -.+..+.+||||++|+.+.|  |    .|++.|+.++..+...-...  -..++|++ |++.|+.... +     ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999999998763  3    48999998876432221111  14699999 6655544433 2     36777


Q ss_pred             EEeecc--eeeEeecccccceE-EEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224          893 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  966 (1120)
Q Consensus       893 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  966 (1120)
                      +++.++  +....+........ .+..+.|+++++..+.   ++.+.+|+...........+....+      ....+. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~-  276 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD-  276 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence            888776  33334443333333 3344558887664333   4568888854321111111111111      112222 


Q ss_pred             ccCCcEEEEEeC----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          967 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       967 spdg~~la~~~d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      +..+.+++....    ..|...++........+....-...|..+.++ .+.++++...+|.-+++-+.
T Consensus       277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            223333333321    23444444421112223322113468888887 34566667777776555543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.045  Score=65.09  Aligned_cols=107  Identities=15%  Similarity=0.259  Sum_probs=78.4

Q ss_pred             EEEccCCCEEEEEe-CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccc
Q 001224          830 FALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                      ++..-.+-+++.|+ .|.+-..|+...-. ...-..-.++|++++|+. +|++++.|-.+|.|.+||+..++.++.+..|
T Consensus        93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            33333556788887 57888888765311 111122356899999999 9999999999999999999999999999888


Q ss_pred             ccceEEEEE---ccCCCEEEEEeCCCCEEEEECCC
Q 001224          908 SKRITGLAF---SHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       908 ~~~V~~l~~---s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      ..+.+++-+   ..++..+.++...|.  +|.+.-
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence            877776654   355667888877775  676543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.17  E-value=2.3  Score=46.88  Aligned_cols=58  Identities=22%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCC-CCcCeEEEcCCCCEEEEEECCCcEE
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQLLTSI-DADGGL-PASPRIRFNKDGCLLAVSTNDNGIK  649 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~  649 (1120)
                      +.++++.-..+.|....+..+..+... ..-... ..+..+++.|||.+.++-..+|.|.
T Consensus       271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            445555555678888887654332221 111222 2588999999999988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.14  E-value=3.1  Score=46.65  Aligned_cols=286  Identities=11%  Similarity=0.083  Sum_probs=149.5

Q ss_pred             CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-----CCCEEEEEe
Q 001224          769 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS  843 (1120)
Q Consensus       769 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-----d~~~l~~~s  843 (1120)
                      ...|++|+..|.++||+.....+.+....+..                     .-..+|..+..-.     +...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence            35689999999999998744433332221111                     0234444444321     334566655


Q ss_pred             CCcEEEEEcCC--Cc-------eeeeecCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEeecceeeEeecccc
Q 001224          844 GGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  908 (1120)
Q Consensus       844 dg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~  908 (1120)
                      -..+.||.+..  +.       .+..+..|.  .....++.-|-+    ..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            67777777621  11       111111222  122333333322    36888899999999999766554444443 2


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccc----------------ee---eeccCCCCCCCCCCcEEEEccC
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN----------------RF---LQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~----------------~~---~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                      ---..++|.+....+++++.+..+.-|....-.....                ..   -...-|..  .-.|..+.++..
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~--~l~i~v~~~~~~  252 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ--ALDIQVVRFSSS  252 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce--eEEEEEEEcCCC
Confidence            2234578888888999999998888887532100000                00   00000000  012233333334


Q ss_pred             CcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCe--eEEEECCCCc---EEEEEEcCCcEEEEEcCCcceeeeeCCCcc
Q 001224          970 QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPI--THATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus       970 g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v--~~l~~s~dg~---~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
                      ...+++-.+..+.+.+. +|........+......  ..+....++.   .++.++.++++.||.=.+..--+++.    
T Consensus       253 ~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~----  327 (418)
T PF14727_consen  253 ESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP----  327 (418)
T ss_pred             CceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence            44455545666666665 34444433332211111  1111112222   47888999999999844433333322    


Q ss_pred             cCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224         1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
                        .    .+| .+.++..++-...|++-+.+|.+.+-=+-+.-...
T Consensus       328 --~----~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~  366 (418)
T PF14727_consen  328 --H----VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF  366 (418)
T ss_pred             --C----CCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence              1    112 22333333345789999999999998887765333

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.02  E-value=0.13  Score=57.63  Aligned_cols=159  Identities=14%  Similarity=0.167  Sum_probs=90.8

Q ss_pred             CCeEEEEEecCCCcEEE-EEe--CCCcEEEEEeecceeeEeecccccceEEEEEccC----CCEEEEEeCCCCEEEEECC
Q 001224          866 PAATFLAFHPQDNNIIA-IGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~la-sg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .++..++|.  ||+.++ +.-  .+|.+++=|   .+.+    |....|.++.|+|-    ...|...-....|.||.+.
T Consensus        20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec--CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            467889997  454443 322  233333322   1223    33455899999985    3345556677889999987


Q ss_pred             Ccccccceee--eccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE
Q 001224          939 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1015 (1120)
Q Consensus       939 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1015 (1120)
                      .......+.+  +.-.-..+.+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|.+||+.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR  169 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence            4322222222  221111111123357899999999988 4444434555543322222122 23778999999999998


Q ss_pred             EEEEEc-CCcEEEEEcCCcc
Q 001224         1016 VYACFL-DATVCVFSAANLK 1034 (1120)
Q Consensus      1016 l~s~~~-Dg~v~iwd~~~~~ 1034 (1120)
                      |+++-. .=.-+|||-....
T Consensus       170 LVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  170 LVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             EEEEeCCeEEEEEecCchhh
Confidence            776642 3347889865543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.95  E-value=1.5  Score=49.20  Aligned_cols=197  Identities=10%  Similarity=0.089  Sum_probs=106.3

Q ss_pred             CcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcc--
Q 001224          720 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA--  797 (1120)
Q Consensus       720 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~--  797 (1120)
                      ...+.+-+.||.+.+|+-+..........+.+|        ..+.|.+....+++++++..+.-|+.+.-....+...  
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP--------gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~  216 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP--------GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ  216 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC--------cCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence            577888999999999997754322222222222        2578888888899999998999888753211111100  


Q ss_pred             --------ccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeE
Q 001224          798 --------TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT  869 (1120)
Q Consensus       798 --------~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~  869 (1120)
                              ....-..-|...-|+.          --.+..+.++.....+++-+..++.+.+.. |......+- +....
T Consensus       217 ~~~~~~~~~~k~l~~dWs~nlGE~----------~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~  284 (418)
T PF14727_consen  217 SGTEQDISSGKKLNPDWSFNLGEQ----------ALDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPS  284 (418)
T ss_pred             ccccccccccccccceeEEECCce----------eEEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCcee
Confidence                    0000111233322221          112333334334445666666677777753 444333332 22222


Q ss_pred             EEE-Ee------cCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc---cCCCEEEEEeCCCCEEEEECCC
Q 001224          870 FLA-FH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       870 ~l~-~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      |++ |.      +..+..+++++.++++.||.=  .+++...+....+| ++...   .-...|++-+.+|.+.+-=+-|
T Consensus       285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             eEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            222 22      111235888999999999963  33444333333333 33332   2345788888899888765555

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.89  E-value=0.023  Score=55.60  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             CCEEEEEe-CCcEEEEEcCCC-ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~  912 (1120)
                      +..+++|. +|.|.+|+.... .....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            44667776 999999988622 22222222233444444444366689999999999999999888888777787 5666


Q ss_pred             EEEEccCCCEEEEE--eCCCCEEEEECCC
Q 001224          913 GLAFSHALNVLVSS--GADSQLCVWSSDG  939 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~--s~Dg~v~iWd~~~  939 (1120)
                      .+..+..++.|+++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            66666666777777  7777788887765

>PHA02713 hypothetical protein; Provisional

Probab=95.86  E-value=0.37  Score=57.29  Aligned_cols=188  Identities=11%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             cCCCEEEEEe-C------CcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc-
Q 001224          834 KNDSYVMSAS-G------GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD-  898 (1120)
Q Consensus       834 ~d~~~l~~~s-d------g~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~-  898 (1120)
                      -++...+.|+ +      ..+..||..+..-  +..+....... +++. - ++++.+.|+.++     .+..||..+. 
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            3666666665 3      2377888776532  11121111112 2222 2 788888888764     4788998754 


Q ss_pred             -eeeEeecccccceEEEEEccCCCEEEEEeCCC-----------------------CEEEEECCCcccccceeeeccCCC
Q 001224          899 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR  954 (1120)
Q Consensus       899 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~v~iWd~~~~~~~~~~~~~~~~~~  954 (1120)
                       ..+..+.........++  -+|+..+.||.++                       .+..||..+.+-.....+.  .. 
T Consensus       379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~-  453 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TG-  453 (557)
T ss_pred             EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--cc-
Confidence             33333332222222222  2677888887653                       3667777664321111111  11 


Q ss_pred             CCCCCCCcEEEEccCCcEEEEE-eC------CeEEEEEcCC-ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC--c
Q 001224          955 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1024 (1120)
Q Consensus       955 ~~~~~~i~~~~fspdg~~la~~-~d------~~v~i~d~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg--~ 1024 (1120)
                           .....+..-+|+..++| .+      ..+..||..+ .+-...-...........+.+  +|+..++|+.||  .
T Consensus       454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML  526 (557)
T ss_pred             -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence                 11111223345555554 32      2467899887 443322222122222333333  788889999888  7


Q ss_pred             EEEEEcCCccee
Q 001224         1025 VCVFSAANLKLR 1036 (1120)
Q Consensus      1025 v~iwd~~~~~~~ 1036 (1120)
                      +..||..+.+-.
T Consensus       527 ~e~yd~~~~~W~  538 (557)
T PHA02713        527 QDTFNVYTYEWN  538 (557)
T ss_pred             hhhcCccccccc
Confidence            788887776654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.84  E-value=2.4  Score=43.75  Aligned_cols=186  Identities=9%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             CccEEEEccCCCEEEEEe-C--CcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          826 AVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      -...+.|..+|.++-+.+ -  ..|+.+|+.+++......-... --..++..  ++++....-.++...+||..+.+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345678877777776665 3  4699999999987765442221 22344554  4566666778999999999999888


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  980 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~  980 (1120)
                      .++.-. +.=+.++  .|++.|+..+....+.++|.++.+....  ++......+ ...+.-+-+- +|...|-. ....
T Consensus       124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCCe
Confidence            888643 5567777  4677777766677799999877554332  222222111 1234455554 56555544 6678


Q ss_pred             EEEEEcCCceeeeccccC----------CC---CCCeeEEEECCCCcEEEEEE
Q 001224          981 LAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
                      |...|..+|++...+...          .+   ..-...||+.|+.+.|...+
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            888899999887654211          01   34578999988766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.81  E-value=6.7  Score=47.66  Aligned_cols=112  Identities=11%  Similarity=-0.003  Sum_probs=74.1

Q ss_pred             EEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEE--EcCCcceeeeeC
Q 001224          963 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF--SAANLKLRCRIN 1040 (1120)
Q Consensus       963 ~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iw--d~~~~~~~~~~~ 1040 (1120)
                      -.+..|-..++.+|....+++||+...+.++......-...|+.+++  .+..+++|...-.|..+  +-...+++.-..
T Consensus       938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            34566777788888889999999988887777665444667888887  56778888765555544  444444443222


Q ss_pred             CCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1041 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1041 ~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                        +..|       -+++++.+.  |-..++.+..=|.+.+-++...-
T Consensus      1016 --D~~p-------R~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1016 --DPVP-------RHVTALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             --CCcc-------ceeeEEEEe--cCCceeeccccCcEEEEECCCcc
Confidence              1122       222244444  46789999988999888876543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.78  E-value=0.56  Score=49.33  Aligned_cols=150  Identities=16%  Similarity=0.058  Sum_probs=88.5

Q ss_pred             CeEEEEEecCCCcEEEEEe-CCCcEEEEEeecceeeEee-cccccceEEEEEccCCCEEEEEeCCCCEEEEE-CCCcccc
Q 001224          867 AATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEKQ  943 (1120)
Q Consensus       867 ~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd-~~~~~~~  943 (1120)
                      .+.+.++++ ++..+|... .++.-.+|-...+.....+ .+  ..++.-.|++++...+....+...+++. ...++..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688999999 676665544 3333344433333333332 33  3688889999987777777677777774 2232221


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcC---Cc--eee-ecccc-CCCCCCeeEEEECCC
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSCD 1012 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~----d~~v~i~d~~---~~--~~~-~~~~~-~~h~~~v~~l~~s~d 1012 (1120)
                       ...+......    ..|..+.+||||..+|.-.    ++.|.+--+.   .+  ..+ ..... ......+.++.|.++
T Consensus       102 -~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 -PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             -eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence             1111111110    1689999999999999842    5677766543   22  011 00111 122568999999999


Q ss_pred             CcEEEEEEcCCc
Q 001224         1013 SQLVYACFLDAT 1024 (1120)
Q Consensus      1013 g~~l~s~~~Dg~ 1024 (1120)
                      +.+++.+...+.
T Consensus       177 ~~L~V~~~~~~~  188 (253)
T PF10647_consen  177 STLVVLGRSAGG  188 (253)
T ss_pred             CEEEEEeCCCCC
Confidence            998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.74  E-value=0.024  Score=40.90  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCce
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER  399 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~  399 (1120)
                      ...|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            45799999999999 7999999999999998 5543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.59  E-value=1.2  Score=45.81  Aligned_cols=170  Identities=7%  Similarity=0.046  Sum_probs=112.1

Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  982 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~  982 (1120)
                      +.+-...|.++.|+|+.+.|++......-.||=...|+.....++....       ....+.+..+|+++++- .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence            4455556999999999999999888888888866666665554444432       34678888899888885 778888


Q ss_pred             EEEcCCceeeecc-----cc--CCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC-C--
Q 001224          983 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-S-- 1051 (1120)
Q Consensus       983 i~d~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~-~-- 1051 (1120)
                      ++.+..+..+...     ..  ..+ +...-.++|.|..+.|..+-+-.-+.||.+..+...-...    ....+. .  
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence            8877665322111     11  122 5567889999999999989888888888776333111111    000110 1  


Q ss_pred             ---CCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1052 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1052 ---~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                         ..+.  ++.|.+..+.+|+-+.+++.+...+....
T Consensus       230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence               0123  67788777788888888888777775543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.58  E-value=2.3  Score=42.11  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=40.0

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224          586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  635 (1120)
Q Consensus       586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  635 (1120)
                      ++++.+|+..+++-..++|...|..+|+.+..+...  +..++|++|-..
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK  264 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence            345667888888889999999999999999999876  457999999653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.57  E-value=0.043  Score=39.63  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEcc
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH  456 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~  456 (1120)
                      ...|.+++|||...+||.|+.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3579999999999999999999999999983

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.45  E-value=0.67  Score=50.82  Aligned_cols=239  Identities=10%  Similarity=0.051  Sum_probs=101.2

Q ss_pred             CCcEEEEEe-CCCcEEEEEeec----ceeeEeecc---cc----cceEEEEEccCCCEEEEEe--CC----CCEEEEECC
Q 001224          877 DNNIIAIGM-DDSSIQIYNVRV----DEVKSKLKG---HS----KRITGLAFSHALNVLVSSG--AD----SQLCVWSSD  938 (1120)
Q Consensus       877 d~~~lasg~-~dg~v~vwd~~~----~~~~~~l~~---h~----~~V~~l~~s~d~~~l~s~s--~D----g~v~iWd~~  938 (1120)
                      +.++|+..+ ..+.|+|+|+.+    -++.+.+..   +.    +.-..+-.-|+|+.++|+=  .+    |-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            445666555 778999999985    244444432   11    1111223347888888753  22    347777777


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---------------------CCeEEEEEcCCceeeecccc
Q 001224          939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---------------------ETQLAIFETTKLECVKQWVP  997 (1120)
Q Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---------------------d~~v~i~d~~~~~~~~~~~~  997 (1120)
                      +.+...     ...........-..+.+.|..+.++++.                     ..++.+||+.+.+.++++..
T Consensus       166 tf~v~g-----~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL  240 (461)
T PF05694_consen  166 TFEVKG-----RWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL  240 (461)
T ss_dssp             T--EEE-----E--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred             cccccc-----eeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence            643321     1111111112346788889888888742                     24799999999999999887


Q ss_pred             CCCCCCeeEEEECCCC--cE-EEEEEcCCcEEEEEc-CCcceee--eeCCCcccCCCCCCC---------CccceEEEec
Q 001224          998 RESSAPITHATFSCDS--QL-VYACFLDATVCVFSA-ANLKLRC--RINPSAYLPAGVSSS---------NVHPLVIAAH 1062 (1120)
Q Consensus       998 ~~h~~~v~~l~~s~dg--~~-l~s~~~Dg~v~iwd~-~~~~~~~--~~~~~~~~~~g~~~~---------~v~~~~i~~~ 1062 (1120)
                      ......+..|.|..|-  .+ ++.+...+.|..|-- +.++-..  .+........+-.-.         +-.++.|.-|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            5434467788887653  33 333334445554433 4443221  122111000000000         0123477788


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 001224         1063 PQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1120 (1120)
Q Consensus      1063 p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (1120)
                      .+|..+.++.-.+|.|+.||++.....-..-.-+=+|...+.+.+.+.+..-.-++||
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence            8655555677789999999999876211111222344444443333333344444443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.35  E-value=0.79  Score=45.16  Aligned_cols=89  Identities=9%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             cEEEEccCCCEEEEEe--CCcEEEEE--cCCCce-----eeeecC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          828 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      ..++|+.+.+.+....  +-+|.-||  ..+|..     +..++.    .....-.+++.. +|++.++....|+|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            4688888888777665  56777787  445433     222221    111233456666 788888888899999999


Q ss_pred             eecceeeEeecccccceEEEEEc
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      ..+|+.+.++.-....|+++||-
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            99999999999899999999996

>PRK10115 protease 2; Provisional

Probab=95.31  E-value=10  Score=46.48  Aligned_cols=247  Identities=9%  Similarity=0.040  Sum_probs=116.4

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      -.+..+.++|||++|+.+...+--.-++                 +.+.|..+|..+...+..     .-..++|++|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence            4566788999999887765532222222                 234455566533322221     114699999998


Q ss_pred             EEEEEe-C------CcEEEEEcCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEee--cceeeEe
Q 001224          838 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK  903 (1120)
Q Consensus       838 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~  903 (1120)
                      .|+... +      ..|+.+++.++  +....+...........+.+.++++++..+.   ++.+.+++..  +++....
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~  264 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF  264 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence            777664 2      25888888887  3333444333333322233336666655443   3578888842  3332222


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCC-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCe
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQ  980 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~  980 (1120)
                      +..-.+....+. +..+.+++....+ ...+|..+.-........+.....    ...+..+.+.  +..|+. . .++.
T Consensus       265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g~  337 (686)
T PRK10115        265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRGL  337 (686)
T ss_pred             EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCCE
Confidence            221112222222 2223333333222 233344332211111122221111    1246677776  334444 3 4554


Q ss_pred             --EEEEEcCCceeeeccccCCCCCCeeEEEEC--CCCc-EEEEEEc---CCcEEEEEcCCcce
Q 001224          981 --LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLKL 1035 (1120)
Q Consensus       981 --v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~~---Dg~v~iwd~~~~~~ 1035 (1120)
                        +.+++..++. +..+.... ...+..+.++  +++. ++++.+.   -+.++.+|..+++.
T Consensus       338 ~~l~~~~~~~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~  398 (686)
T PRK10115        338 TSLRQINRKTRE-VIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER  398 (686)
T ss_pred             EEEEEEcCCCCc-eEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence              5555554333 23222111 2223334455  4444 4444432   36799999988753

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.20  E-value=0.82  Score=54.24  Aligned_cols=194  Identities=10%  Similarity=0.067  Sum_probs=104.8

Q ss_pred             ccEEEEccCCCEEEEEe-C-C-----cEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEE
Q 001224          827 VPCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQI  892 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s-d-g-----~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~v  892 (1120)
                      -.++++. ++...++|+ | |     ++..||..+.+-.  ..+....... +++..  +|.+.|+|+.||     +|..
T Consensus       325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEE
Confidence            3344443 446666666 6 3     4778887765422  2222222212 22222  788999999997     4677


Q ss_pred             EEeecce--eeEeecccccceEEEEEccCCCEEEEEeCCC------CEEEEECCCcccccceeeeccCCCCCCCCCCcEE
Q 001224          893 YNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  964 (1120)
Q Consensus       893 wd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  964 (1120)
                      ||..+.+  .+..+.........+.+  +|...+.||.|+      ++..||..+++-.....+......       ..+
T Consensus       401 YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~  471 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGV  471 (571)
T ss_pred             ecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceE
Confidence            7776643  33333222222222233  678888888665      467888877654333333333221       223


Q ss_pred             EEccCCcEEEE-EeCC-----eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCc
Q 001224          965 QFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANL 1033 (1120)
Q Consensus       965 ~fspdg~~la~-~~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~ 1033 (1120)
                      + .-++...++ |.|+     +|..||..+.+....-........+....+  +++..++|+.||     +|..||..+.
T Consensus       472 a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  472 A-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             E-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            3 335555555 4444     478899888766544222222223322333  677778888775     5777776666


Q ss_pred             cee
Q 001224         1034 KLR 1036 (1120)
Q Consensus      1034 ~~~ 1036 (1120)
                      +-.
T Consensus       549 ~W~  551 (571)
T KOG4441|consen  549 TWT  551 (571)
T ss_pred             cee
Confidence            554

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.19  E-value=11  Score=46.02  Aligned_cols=105  Identities=13%  Similarity=0.132  Sum_probs=64.6

Q ss_pred             EEEccCCCEEEEEeCCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeecc
Q 001224          830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG  906 (1120)
Q Consensus       830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~  906 (1120)
                      .|+.|...++.+|-...+++||+...+.++...  .....|+.+.+.   +..+++|+..-.|.++..+. +..+..+.+
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            456677778888888999999998777665532  234567777774   45677777666666544432 223333432


Q ss_pred             --cccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          907 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       907 --h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                        -..-|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence              22336665554 44567777666666555543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.09  E-value=5.3  Score=48.99  Aligned_cols=210  Identities=13%  Similarity=0.124  Sum_probs=114.4

Q ss_pred             EEEEEeCCCcEEEEEeecceeeEeecccccc--------eEEEEEc----------------cCCCEEEEEeCCCCEEEE
Q 001224          880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW  935 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~Dg~v~iW  935 (1120)
                      .|..++.++.|.-.|..+|+.+-++......        ...+++.                .++..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5555677888888888888877666432210        1123332                134578888899999999


Q ss_pred             ECCCccccccee------eeccCCCCCCCCCCcEEEEcc---CCcEEEEEe----------CCeEEEEEcCCceeeeccc
Q 001224          936 SSDGWEKQKNRF------LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       936 d~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~fsp---dg~~la~~~----------d~~v~i~d~~~~~~~~~~~  996 (1120)
                      |.++|+.....-      ++...+...  ..-..+.-+|   ++..++.+.          +|.|+-+|+.+|+.+-.+.
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~--~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTP--PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCC--CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            999887542110      110000000  0000111122   343333221          4789999999999876654


Q ss_pred             cCC--------------C-CCCe-eEEEECCCCcEEEEEE------------------cCCcEEEEEcCCcceeeeeCCC
Q 001224          997 PRE--------------S-SAPI-THATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus       997 ~~~--------------h-~~~v-~~l~~s~dg~~l~s~~------------------~Dg~v~iwd~~~~~~~~~~~~~ 1042 (1120)
                      ...              + ...+ ..+++.++..+++.+.                  ..+.|.-.|++||+.+-.++..
T Consensus       354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~  433 (764)
T TIGR03074       354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV  433 (764)
T ss_pred             cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence            310              0 0111 2345555544444322                  1356777789999998777621


Q ss_pred             cccCCCCCCCCccceEEEecCCCCC---EEEEEeCCCcEEEEecCCCCCCCCC
Q 001224         1043 AYLPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus      1043 ~~~~~g~~~~~v~~~~i~~~p~d~~---~l~s~~~Dg~v~vW~~~~~~~~~~~ 1092 (1120)
                      .+-.-.. +..-.++-+.+...+++   .++.++.+|.+++.|-.+|+..|..
T Consensus       434 ~hD~WD~-D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       434 HHDLWDM-DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CCccccc-cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            1000000 01011222223221453   7999999999999999999977764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=95.02  E-value=0.055  Score=50.17  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      ..++.. ++|+++-+.|||++..|...+|..++.+.-.-+...+.+.++.|+.+....++.+++....+
T Consensus        23 k~EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~   90 (133)
T cd08044          23 KYELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLF   90 (133)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHH
Confidence            446666 99999999999999999999999999977666666678899999999888888776665544

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.94  E-value=4.4  Score=49.18  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=59.0

Q ss_pred             CCCCccEEEEccCCCEEEEEeCCcEEEEEcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      ....|..+.++++|++++..+...|.|..+-. +.....+.+....|.|=.+.- +..++.                   
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~-------------------  142 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT-------------------  142 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence            45678999999999999998877777777642 111122332233343333332 222221                   


Q ss_pred             EeecccccceEEEEEccC---CCEEEEEeCCCCEEEEECCC
Q 001224          902 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                         ..+...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence               123445777888876   47888888899999999865

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=94.90  E-value=0.057  Score=50.68  Aligned_cols=67  Identities=19%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             cccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        66 ~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      .++.. ++|+|+-+.||+|+..|+.++|..++.+.-.-+.....+.+++|..+....++...+....+
T Consensus        35 ~EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~  101 (142)
T PF04494_consen   35 PELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLF  101 (142)
T ss_dssp             HHHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHH
Confidence            35666 99999999999999999999999999987776666677888888877776666644444333

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=0.083  Score=51.86  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             EEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE-EEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224          380 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSPDGSLFGVAYSRHIVQIYSYHGG  458 (1120)
Q Consensus       380 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~las~~~dg~v~iwd~~~~  458 (1120)
                      +++|+.+|.|.+|++........                  ....-...|.+ |.--.++.+..+++.||.|+.|++.-+
T Consensus        73 ~~vG~~dg~v~~~n~n~~g~~~d------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~  134 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEGAHSD------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN  134 (238)
T ss_pred             EEeecccceEEEecCCccchHHH------------------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence            88999999999999862111110                  01111122222 333346678889999999999999988


Q ss_pred             ceeeeeeeecccc-cCeEEEEEcCCCCceEEEEe--cCCCcEEEEECC
Q 001224          459 DEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDAT  503 (1120)
Q Consensus       459 ~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~--s~d~~i~vwd~~  503 (1120)
                      +.+.   ....|. .++.....+..++  +++.+  |.|..++.|++.
T Consensus       135 k~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  135 KVLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ceee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchh
Confidence            7665   233455 4444444444444  34444  666666666654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.61  E-value=11  Score=43.14  Aligned_cols=156  Identities=13%  Similarity=0.047  Sum_probs=83.4

Q ss_pred             cCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEEeeccccCeEEEeeccCC--CceEEEEEecCCeEEEEecC
Q 001224          472 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD  547 (1120)
Q Consensus       472 ~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~  547 (1120)
                      .+|..++|. ||++ +++|.-  ..|.+++=|   ...+..|    ..|..++|.|..  +...+.+....+.|.+|-+.
T Consensus        20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            378999995 7776 455542  222222222   2223333    457888887642  22356677778999999875


Q ss_pred             CCCCc--eeeeCCCCce-eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeEEEecCC
Q 001224          548 NLGSR--VDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADG  622 (1120)
Q Consensus       548 ~~~~~--~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~  622 (1120)
                      .....  .-+......+ ..+..-|+|              +.|+|....|++-.....=.++++...  +....++.. 
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-  155 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS-  155 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence            32111  0000000000 011112222              457777776666554444345555433  333334333 


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECC-CcEEEEEc
Q 001224          623 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT  653 (1120)
Q Consensus       623 ~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~  653 (1120)
                        +.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus       156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence              359999999999988877543 24567874

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.47  E-value=4.5  Score=44.63  Aligned_cols=191  Identities=14%  Similarity=0.176  Sum_probs=94.0

Q ss_pred             EEEEccCCCEEEEEe---C----CcEEEEEcCCCceeeeecCCCC---CeEEEEEecCCCcEEEEEe-------------
Q 001224          829 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------  885 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~-------------  885 (1120)
                      .+..-|+|+.++++-   +    |.+.+.|-++.+..........   --..+-+.| ..+.+++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence            344557898888752   2    4588999888887776654322   245566777 666666653             


Q ss_pred             -------CCCcEEEEEeecceeeEeecccc--cceEEEEEccC--CCE-EEEEeCCCCEEEE-ECCCcccccceeeeccC
Q 001224          886 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPT  952 (1120)
Q Consensus       886 -------~dg~v~vwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~v~iW-d~~~~~~~~~~~~~~~~  952 (1120)
                             ...++.+||+.+.+.++++.--.  .....|.|..+  ..+ ++.+.-..+|..| .-+.++-.....+....
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                   13579999999999998886433  23556777644  333 3333334444444 33444433344444432


Q ss_pred             CCC-----C--------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc---eeeeccccCC--------------C
Q 001224          953 GRT-----P--------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRE--------------S 1000 (1120)
Q Consensus       953 ~~~-----~--------~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~---~~~~~~~~~~--------------h 1000 (1120)
                      ...     +        ...-|+.+..|.|.++|.++  ..|.|+.||+..-   +++.+....+              -
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            210     0        02457999999999999985  7999999999652   3333322221              1


Q ss_pred             CCCeeEEEECCCCcEEEEEE
Q 001224         1001 SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus      1001 ~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
                      .+...-|..|-||++|+..+
T Consensus       373 ~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -S----EEE-TTSSEEEEE-
T ss_pred             CCCCCeEEEccCCeEEEEEe
Confidence            23346788999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.42  E-value=8.9  Score=43.09  Aligned_cols=138  Identities=16%  Similarity=0.151  Sum_probs=77.9

Q ss_pred             CCccEEEEccCCCEEEEEe------------CC-cEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224          825 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD  887 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s------------dg-~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  887 (1120)
                      .....|+|.++|+.+++-.            .+ .|.+++-.+  ++.  ...+.......+.+++.+ ++ +++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            4567899999999887742            23 677776532  322  233433344568899998 77 444 3444


Q ss_pred             CcEEEE-Eeec-------ce-eeEeecc----cccceEEEEEccCCCEEEEEeCC-------------------CCEEEE
Q 001224          888 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW  935 (1120)
Q Consensus       888 g~v~vw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------g~v~iW  935 (1120)
                       .|..| |...       .+ ++..+..    +......++|.|||.+.++.+..                   |.|.-+
T Consensus        91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence             34433 4321       11 1222322    23447789999999887765521                   334444


Q ss_pred             ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          936 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       936 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      +.++++.   ..  ...+.    .....++|+++|+++++
T Consensus       170 ~pdg~~~---e~--~a~G~----rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       170 NPDGGKL---RV--VAHGF----QNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ecCCCeE---EE--EecCc----CCCccceECCCCCEEEE
Confidence            4444321   11  11222    23578999999999877

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.39  E-value=7.6  Score=40.58  Aligned_cols=231  Identities=14%  Similarity=0.205  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCC----ceeeeeeeecc-----cccCeEEEEEcCCCCc----------eEE
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------LCV  488 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~~l  488 (1120)
                      .-+.|+|+|.+.+-++....+...+||....    .......++..     .....+.+.|+.....          ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4578999999988888888899999999711    11111112221     2346777888754331          136


Q ss_pred             EEecCCCcEEEEECCCCce-----eEEee-ccccCe-EEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCce--eeeCC
Q 001224          489 ITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYEAP  558 (1120)
Q Consensus       489 ~s~s~d~~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~~  558 (1120)
                      +.+++||+|.-|...-+..     ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-.....  .+..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7788999999998543222     12222 112333 345554444445666654 47889998755322111  01111


Q ss_pred             CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC----
Q 001224          559 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK----  634 (1120)
Q Consensus       559 ~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----  634 (1120)
                      .  + -.-+.|-+-..+.  ..-.+....-++++..=+.+..-|.|-++|. .|+.++.+...+....-..++..|    
T Consensus       184 ~--i-PagyAPFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       184 A--L-PAGYAPFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             C--C-CCCCCCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            0  0 0011111110000  0001111222334444455666789999998 678888886555555667777765    


Q ss_pred             --CCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224          635 --DGCLLAVSTNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       635 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                        .|.+|+---.||+|..+|..++ +.+-.+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence              4677887778999999999888 44444433

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.34  E-value=10  Score=41.85  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=88.6

Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEE-EeecceeeEe-ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224          865 PPAATFLAFHPQDNNIIAIGMDDSSIQIY-NVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  942 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vw-d~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~  942 (1120)
                      ...+..+.+.| ++.++++|. .|.+..- + ..++.-.. -..-...++++.+.++++.++.+ ..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688999999 777776654 5555432 2 11221111 12334678999999998877654 467554322333321


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEc
Q 001224          943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                        ..........  ....+..+++.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus       248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~  321 (334)
T PRK13684        248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q  321 (334)
T ss_pred             --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence              1111111000  11246789999999888888877665 34444443332221 1113467888888777776655 5


Q ss_pred             CCcEEEEE
Q 001224         1022 DATVCVFS 1029 (1120)
Q Consensus      1022 Dg~v~iwd 1029 (1120)
                      .|.|-.|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            78887776

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.30  E-value=4.4  Score=41.29  Aligned_cols=199  Identities=13%  Similarity=0.132  Sum_probs=125.3

Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce
Q 001224          867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR  946 (1120)
Q Consensus       867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~  946 (1120)
                      .-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..   
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---  137 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---  137 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---
Confidence            345677788 88888888888888888888888766655555566678888888766654333 3444454443321   


Q ss_pred             eeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC----------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224          947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus       947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~----------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
                      .......+..  .......|.++|++-.++..|          .|++|+..            .....+.|+..|||..-
T Consensus       138 ~f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvw  203 (353)
T COG4257         138 RFPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVW  203 (353)
T ss_pred             EeecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEE
Confidence            2222222222  467888999999998885432          35555543            24456778999999988


Q ss_pred             EEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCCC
Q 001224         1017 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVP 1093 (1120)
Q Consensus      1017 ~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~ 1093 (1120)
                      ++.-.+..|-..|-.++.. ..+....-+..+     ..  .+--+| -+..-++....+.++.+|.+... ..|.+|
T Consensus       204 yaslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP  272 (353)
T COG4257         204 YASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP  272 (353)
T ss_pred             EEeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence            8777777777777777632 233322222222     11  233344 46777777778888888877765 444444

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.22  E-value=0.039  Score=64.09  Aligned_cols=178  Identities=13%  Similarity=0.190  Sum_probs=103.5

Q ss_pred             CcEEEEEcC--CCceeee-----ecCCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEE
Q 001224          845 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAF---HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  914 (1120)
Q Consensus       845 g~i~vwd~~--~~~~~~~-----~~~~~~~i~~l~~---sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  914 (1120)
                      |.+.||+++  .|+....     .......+.-+.|   .+ +.-++..+..++.|++....+.. ...+.+|+..++.+
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccH
Confidence            678888875  3333222     1222223344444   44 55677788889999988776543 25566688777666


Q ss_pred             E-----------EccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-------Cc--EEE
Q 001224          915 A-----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFL  974 (1120)
Q Consensus       915 ~-----------~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-------g~--~la  974 (1120)
                      +           .||||..+|.++.||.++.|.+.-..+...+|+.....|..  .+-.|..|..+       +.  +++
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I  308 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI  308 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence            5           48999999999999999999876544444555554444432  12233334332       22  223


Q ss_pred             EE--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE------------EEEEEcCCcEEEEEcC
Q 001224          975 VV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSAA 1031 (1120)
Q Consensus       975 ~~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~s~~~Dg~v~iwd~~ 1031 (1120)
                      ++  .+..+++|.-...+|...+.    ...|..+. -+||+.            +++-+-|++|.+|.=.
T Consensus       309 tttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~  374 (1283)
T KOG1916|consen  309 TTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR  374 (1283)
T ss_pred             ecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence            33  34578888887777763322    22333343 333331            3345567888888643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.21  E-value=2.2  Score=44.07  Aligned_cols=158  Identities=12%  Similarity=0.050  Sum_probs=105.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224          910 RITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  987 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~  987 (1120)
                      -..++.|..+|.++-|.|.-|  .|+.+|+.+++......+  ....     --..++...|.-+..+-.++...+||..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~-----FgEGit~~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRY-----FGEGITILGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT-------EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--Cccc-----cceeEEEECCEEEEEEecCCeEEEEccc
Confidence            345788878888888888776  699999999765432222  2111     1245666666666666689999999999


Q ss_pred             CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCc-cceEEEecCCCC
Q 001224          988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV-HPLVIAAHPQEP 1066 (1120)
Q Consensus       988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~i~~~p~d~ 1066 (1120)
                      +.+.+.++...   +.=+.++  .||+.|+.......++++|..+.+....+....    +  +..+ ..--+.|.  +|
T Consensus       119 tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~----~--g~pv~~LNELE~i--~G  185 (264)
T PF05096_consen  119 TLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD----N--GRPVSNLNELEYI--NG  185 (264)
T ss_dssp             TTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----T--TEE---EEEEEEE--TT
T ss_pred             cceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE----C--CEECCCcEeEEEE--cC
Confidence            99999988754   4566777  577878777667789999999998888876321    1  1112 11156666  47


Q ss_pred             CEEEEEeCCCcEEEEecCCCC
Q 001224         1067 NEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1067 ~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+.|-.=....|..-|+.+|+
T Consensus       186 ~IyANVW~td~I~~Idp~tG~  206 (264)
T PF05096_consen  186 KIYANVWQTDRIVRIDPETGK  206 (264)
T ss_dssp             EEEEEETTSSEEEEEETTT-B
T ss_pred             EEEEEeCCCCeEEEEeCCCCe
Confidence            788888778888888888888

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.98  E-value=8.1  Score=46.98  Aligned_cols=66  Identities=23%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             CCcEEEEecCCCceeEeeceeeeccCCCC---cccccccc-cCCCCceEEEEEcCCCCeEEEEECCCeEEE
Q 001224          386 VGDIGLWEVGSRERLVLRNFKVWDLGACS---MPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQI  452 (1120)
Q Consensus       386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l-~~h~~~V~~l~~spdg~~las~~~dg~v~i  452 (1120)
                      |+.+.+||-..... ...+++..+-....   ..++.... ..-.-.|..|.+||+|++||..|..|.+.+
T Consensus        41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            57888888765443 33344332221111   12221111 223457999999999999999998775443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=93.86  E-value=2.1  Score=51.28  Aligned_cols=188  Identities=8%  Similarity=-0.006  Sum_probs=92.0

Q ss_pred             cCCCEEEEEe-C------CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001224          834 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  899 (1120)
Q Consensus       834 ~d~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~  899 (1120)
                      .++..++.|+ +      ..+..||..+.+-...  +.........+  .- ++++++.|+.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VF-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EE-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3455555554 3      2477888776543221  11111122222  23 678888888653     57778876643


Q ss_pred             --eeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224          900 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  971 (1120)
Q Consensus       900 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~  971 (1120)
                        ....+....... +++ .-+++..+.||.+      ..+..||..+.+-..   +......    ..-.+ +..-+++
T Consensus       370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~~~~-~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HYGGC-AIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----ccCce-EEEECCE
Confidence              222222111111 112 2356777777742      357888887643221   1111100    01122 2334556


Q ss_pred             EEEEEe-C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224          972 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus       972 ~la~~~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
                      ..+.|+ +        ..+.+||..+++....-...........+.+  +++.++.|+.+     ..|.+||..+.+-.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            555542 1        2388999887754432211111111122222  77777777754     46888888776544

>PHA03098 kelch-like protein; Provisional

Probab=93.63  E-value=4.1  Score=48.76  Aligned_cols=193  Identities=12%  Similarity=0.110  Sum_probs=92.7

Q ss_pred             CCcEEEEEeCCC------cEEEEEeecceee--EeecccccceEEEEEccCCCEEEEEeCCC-----CEEEEECCCcccc
Q 001224          877 DNNIIAIGMDDS------SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ  943 (1120)
Q Consensus       877 d~~~lasg~~dg------~v~vwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~  943 (1120)
                      ++.+++.|+.++      .+..||..+.+-.  ..+.........+.  -+++..+.||.++     .+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            445555555432      4667776664422  11221111122222  3677778888663     4667887764322


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---C----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---d----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
                      ....+.  ...     .-.++ ..-+++..+.|+   +    ..+..||..+++-...-........ .+ +...+++..
T Consensus       372 ~~~~lp--~~r-----~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~-~~~~~~~iy  441 (534)
T PHA03098        372 EEPPLI--FPR-----YNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC-AIYHDGKIY  441 (534)
T ss_pred             eCCCcC--cCC-----ccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce-EEEECCEEE
Confidence            111111  110     11122 233566666542   1    3588999887654332111110111 12 223366776


Q ss_pred             EEEEcC--------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEec
Q 001224         1017 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1083 (1120)
Q Consensus      1017 ~s~~~D--------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~ 1083 (1120)
                      +.|+.+        ..+.+||..+++-...-.  ...+..  .  ..  .+.+   ++.+++.|+.+     +.+.++|+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~--~~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--N--AS--LCIF---NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--c--ce--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence            767643        238889988876543211  001111  1  11  2222   46788888765     46788887


Q ss_pred             CCCCCCCCCCC
Q 001224         1084 LESEGKWGVPP 1094 (1120)
Q Consensus      1084 ~~~~~~~~~~~ 1094 (1120)
                      .+.+  |...+
T Consensus       511 ~~~~--W~~~~  519 (534)
T PHA03098        511 KTNT--WTLFC  519 (534)
T ss_pred             CCCE--EEecC
Confidence            7655  65443

>PHA02790 Kelch-like protein; Provisional

Probab=93.59  E-value=3  Score=48.76  Aligned_cols=183  Identities=11%  Similarity=-0.022  Sum_probs=90.4

Q ss_pred             CCCEEEEEe-C-----CcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecc--eeeE
Q 001224          835 NDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVKS  902 (1120)
Q Consensus       835 d~~~l~~~s-d-----g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~--~~~~  902 (1120)
                      ++..+++|+ +     ..+..||..+.+-.  ..+....... +++ .- ++.+.++|+.++  .+..||..++  ..+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455556665 3     24677887764432  2222111112 222 23 778888888643  5778887653  3333


Q ss_pred             eecccccceEEEEEccCCCEEEEEeCCC---CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224          903 KLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  979 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~  979 (1120)
                      .+.........+  .-+|+..+.||.++   .+..||..+.+-.....+...        .-...+..-+|+..+.|  |
T Consensus       348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--------r~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--------HYKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--------cccceEEEECCEEEEEC--C
Confidence            333222212222  23677778887654   467788766432111111111        01122224456666665  4


Q ss_pred             eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcc
Q 001224          980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1034 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~ 1034 (1120)
                      .+.+||..+++-...-...........+.  -+|+..+.|+.+     ..|.+||..+++
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            57789887765443221111111222222  377777777754     346666666554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.51  E-value=14  Score=40.65  Aligned_cols=165  Identities=12%  Similarity=0.107  Sum_probs=91.1

Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEeec--c-----ee--eEeeccccc--------ceEEEEEccCCC
Q 001224          865 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D-----EV--KSKLKGHSK--------RITGLAFSHALN  921 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~-----~~--~~~l~~h~~--------~V~~l~~s~d~~  921 (1120)
                      -+.+..+.+.+.++.+++ -+++|.      ++.+++..  +     +.  ...+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            356788999873555554 566666      66555543  1     00  111222222        233788888888


Q ss_pred             EEEEEeCC------CCEEEEECCCcccccceeeeccC-------CCCCCCCCCcEEEEccCCcEEEEE------eCC--e
Q 001224          922 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVV------HET--Q  980 (1120)
Q Consensus       922 ~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~fspdg~~la~~------~d~--~  980 (1120)
                      ++++.=.+      ..|+.++.+ |.......+...-       ...........++++|||+.|.++      .|+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88876666      667777766 3332221111100       112233578999999999955542      232  1


Q ss_pred             -------EEE--EEcCC-ceeeeccccCC-------CCCCeeEEEECCCCcEEEEEE-----cCCcEEEEEcC
Q 001224          981 -------LAI--FETTK-LECVKQWVPRE-------SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1031 (1120)
Q Consensus       981 -------v~i--~d~~~-~~~~~~~~~~~-------h~~~v~~l~~s~dg~~l~s~~-----~Dg~v~iwd~~ 1031 (1120)
                             +++  ||..+ ++....+...-       ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   444  55544 32333333221       357899999999999877422     23456666544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.45  E-value=1.5  Score=51.40  Aligned_cols=118  Identities=10%  Similarity=0.154  Sum_probs=73.3

Q ss_pred             CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE--eecccccceEEEEEc--cCCCEEEEEeCCCCEEEEECCCc-
Q 001224          866 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW-  940 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~iWd~~~~-  940 (1120)
                      ..++-+.-|. -++..++-+....+.|||...+.+..  .+ ...+.|.++.|.  |||+.+++.|..+.|.+|.-... 
T Consensus        30 ~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3444454554 34444444445589999998876332  23 346789999986  78999999999999999964211 


Q ss_pred             ---ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001224          941 ---EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  986 (1120)
Q Consensus       941 ---~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~  986 (1120)
                         .......++...-..-...+|.+..|.++|.+++. ..+.+.|+|-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence               11111122222111111247889999999976554 4677888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.97  E-value=11  Score=44.25  Aligned_cols=182  Identities=11%  Similarity=0.099  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe--e--cccccceEEEEEccCCC
Q 001224          846 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALN  921 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~  921 (1120)
                      .|+||++. |+.+..+.-..+.+..+.|+. +. -|++-..+|+++||++.. +.+..  .  ......|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            48888875 566666554455899999996 44 455568999999999763 32222  1  22233455555555664


Q ss_pred             EEEEEeCCCCEEEE-ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE--EeC--CeEEEEEcCCceee-ecc
Q 001224          922 VLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE--TQLAIFETTKLECV-KQW  995 (1120)
Q Consensus       922 ~l~s~s~Dg~v~iW-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~--~~d--~~v~i~d~~~~~~~-~~~  995 (1120)
                      .+.+  .+|.+.+- +......   ..+...++..   ..-.+...-+++.....  .-+  -...++-...+... ..+
T Consensus       141 avlt--~~g~v~~i~~~~~~~~---~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVLT--VSGQVILINGVEEPKL---RKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEEe--cCCcEEEEcCCCcchh---hhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            4333  34444332 3222111   1111111111   11123333333221111  111  00111212111111 111


Q ss_pred             ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCC
Q 001224          996 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1041 (1120)
Q Consensus       996 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 1041 (1120)
                      .  .-.+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+..
T Consensus       213 ~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  213 S--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             C--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            1  1146788899999999999999999999999998888887763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.86  E-value=16  Score=39.29  Aligned_cols=231  Identities=13%  Similarity=0.056  Sum_probs=108.2

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-cee-
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV-  900 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~-  900 (1120)
                      ...++.|..+ .-+++|..+ +.+...+.++.-..+.   .-.+....+.... ++..++ ++..|.|+.  ... |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence            3556777543 445555554 3333334343322221   1122333444433 344444 344555443  222 221 


Q ss_pred             eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001224          901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  980 (1120)
Q Consensus       901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~  980 (1120)
                      ......-.+.+..+..++||++++++.......-||--..   .........     ...|..+.|+|++.+.+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence            1223344577888999999999988876666667774431   111222211     14789999999999888888888


Q ss_pred             EEEEE-cCCceeeec-cc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224          981 LAIFE-TTKLECVKQ-WV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus       981 v~i~d-~~~~~~~~~-~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
                      |+.=+ ....+.... .. .....-.+..++|.+++...++|+ .|.+. ...+.|+.=.+-......|     .+.+  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence            88776 222222211 11 111234489999999988888665 45444 3555665544433112222     2244  


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1058 VIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1058 ~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      .+.|.+  ++.-.+.+.+|.|.=|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            788876  3455555568877654

>PRK13684 Ycf48-like protein; Provisional

Probab=92.82  E-value=18  Score=39.91  Aligned_cols=158  Identities=11%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224          908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  987 (1120)
Q Consensus       908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~  987 (1120)
                      ...+.++.+.+++.+++++. .|.+.. ..+.+.. ........     ....+..+.+.+++..++++..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~-tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQT-AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCC-eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            45688999999987766554 554432 1111111 11112111     1146789999999998888877766532344


Q ss_pred             CceeeeccccC--CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          988 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       988 ~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      .+..-.....+  .....+.++.+.++++.++++ .+|.|. ...+.|+.-..+......+.     ..+  .+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence            44332221111  113457889999988866644 577665 34555554333321111111     133  566664  


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001224         1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      ++....++..|.|..|+-.
T Consensus       313 ~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCceEEECCCceEEEecCC
Confidence            3455556678999888744

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.79  E-value=4.5  Score=39.44  Aligned_cols=173  Identities=11%  Similarity=0.061  Sum_probs=93.2

Q ss_pred             CCCEEEEEe---CCcEEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224          835 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  906 (1120)
Q Consensus       835 d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  906 (1120)
                      +|.++.+.+   ...|++||+.+++.+..-+-..     ..|+.+     +..+.+..-.+|.-.++|..+.+++..+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccccc
Confidence            445555554   3569999999988876543221     122222     233444456788999999999888777653


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  985 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d  985 (1120)
                       .+.=++++-  |++.|+.++...+++.-|.++...... ..-..++..-  ..+.-+.|- ||...|- -.+..|...+
T Consensus       130 -~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         130 -EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             -CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceeee-ccEEEEeeeeecceEEEc
Confidence             233455544  666677666566676666655333221 1112222110  111222221 3443333 2444555556


Q ss_pred             cCCceeeeccccC----------CCCCCeeEEEECCCC-cEEEEE
Q 001224          986 TTKLECVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1019 (1120)
Q Consensus       986 ~~~~~~~~~~~~~----------~h~~~v~~l~~s~dg-~~l~s~ 1019 (1120)
                      .++|+.+.-+...          .|..-...|++.|++ +++++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6666654433221          234456789999987 455555

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.56  E-value=11  Score=37.55  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             EEEEEeCCCcEEEEEeec--ceeeEeecccccceEEEEEccCCCEEEEEeCCC------CEEEE-ECCCcccccceeeec
Q 001224          880 IIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVW-SSDGWEKQKNRFLQI  950 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iW-d~~~~~~~~~~~~~~  950 (1120)
                      .|..+.....|.+|++..  .+.+..|..- +.|..+.++..|++|+|-=.+.      .+|+| |.+.......+....
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            443445667899999983  4555666544 7899999999999999864322      46665 222211111111101


Q ss_pred             cCCC------------------CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee-eec-----cc---cCCC-CC
Q 001224          951 PTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VKQ-----WV---PRES-SA 1002 (1120)
Q Consensus       951 ~~~~------------------~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~-~~~-----~~---~~~h-~~ 1002 (1120)
                      ..||                  .+...++.+++..|-.--|++|.++.+.+|.+..... ...     +.   ...| .-
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~  188 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNF  188 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCc
Confidence            1110                  0112356788888876667788889999998865544 111     10   0111 22


Q ss_pred             CeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224         1003 PITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus      1003 ~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      .+..++|  .+.|+|..+ +-.++|+.+
T Consensus       189 ~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  189 KPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             eEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence            2455555  577888765 566777654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.50  E-value=3.4  Score=48.60  Aligned_cols=124  Identities=10%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             CeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC
Q 001224          473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  551 (1120)
Q Consensus       473 ~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  551 (1120)
                      ...-+.-|.-++  +.+.-+....+.|||...+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-.....
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            444555555566  34444455679999999887654332 357889999999999999999999999999984321000


Q ss_pred             ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224          552 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  609 (1120)
Q Consensus       552 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  609 (1120)
                      ... ...-..+..+.        +..++..+|....|.++|..++.+  ++.+.|+|-
T Consensus       109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            000 00001222222        223344466667777777644443  356777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.30  E-value=0.14  Score=59.76  Aligned_cols=108  Identities=19%  Similarity=0.359  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEE-----------EecCCCcEEEEEeCCCcEEEEEeec-c-
Q 001224          833 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA-----------FHPQDNNIIAIGMDDSSIQIYNVRV-D-  898 (1120)
Q Consensus       833 s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~-----------~sp~d~~~lasg~~dg~v~vwd~~~-~-  898 (1120)
                      -++.-++..+. +++|++.++.+... ..+.+|...++.++           +|| ||+.+|+++.||.+++|.+.- | 
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeecc
Confidence            34556666666 68888877664332 44555765554433           789 999999999999999987642 2 


Q ss_pred             ---eeeEeeccccc-ceEEEEEccC-------CC--EEEEE-eCCCCEEEEECCCccc
Q 001224          899 ---EVKSKLKGHSK-RITGLAFSHA-------LN--VLVSS-GADSQLCVWSSDGWEK  942 (1120)
Q Consensus       899 ---~~~~~l~~h~~-~V~~l~~s~d-------~~--~l~s~-s~Dg~v~iWd~~~~~~  942 (1120)
                         .|++.++.|.+ +-.|.-+...       +.  +++++ .....+++|.-..+++
T Consensus       270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence               45566777773 3333324322       11  33443 4456689998777554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.20  E-value=0.021  Score=61.86  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=98.7

Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      ......+-+.+..++.++.+..+..||-...                      ....     .........++|..++..
T Consensus        36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le-----~n~tg~aldm~wDkegdv   88 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILE-----LNPTGKALDMAWDKEGDV   88 (615)
T ss_pred             ccceeeEecCCCceehhhhhhHHHhhhhhcc----------------------eecc-----cCCchhHhhhhhccccch
Confidence            3344566777777888888877777763211                      1111     113445566778777777


Q ss_pred             EEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEE
Q 001224          839 VMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  916 (1120)
Q Consensus       839 l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~  916 (1120)
                      +++..  .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++
T Consensus        89 lavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av  167 (615)
T KOG2247|consen   89 LAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV  167 (615)
T ss_pred             hhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence            76654  68899999976432211111111122278999 8899999999999999998877766666569999999999


Q ss_pred             ccCCCEEEEEeCCCCEEEEE
Q 001224          917 SHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       917 s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      .+.+ +.+.++.|..+.+-.
T Consensus       168 ~lEd-~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  168 TLED-YVILCDCDNTLSVTT  186 (615)
T ss_pred             cccc-eeeecCcHHHHHHhh
Confidence            9875 556666666554433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.13  E-value=5.9  Score=43.91  Aligned_cols=150  Identities=15%  Similarity=0.113  Sum_probs=89.7

Q ss_pred             CCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC------CceEEEEEecCCeEEEEecCCCCCceee
Q 001224          482 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVDY  555 (1120)
Q Consensus       482 d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~  555 (1120)
                      +...+++..|+....++--|++.|+.+..+..|...|  +.+.|..      +.+.|+- -.+..|.-.|.+..+.....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEe-ecccceEEecccccCCceee
Confidence            3344466777788889999999999999998777654  4444332      1233443 34555555565543322211


Q ss_pred             eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC
Q 001224          556 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  635 (1120)
Q Consensus       556 ~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  635 (1120)
                      .......+.-.|+..+                 .....++++++..|.|++||.-..+....+++-+.  .|..+..+.+
T Consensus       554 ~esKdY~tKn~Fss~~-----------------tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~  614 (776)
T COG5167         554 VESKDYKTKNKFSSGM-----------------TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTAN  614 (776)
T ss_pred             eeehhccccccccccc-----------------cccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecC
Confidence            1111111111111111                 12235799999999999999755444444444433  6888999999


Q ss_pred             CCEEEEEECCCcEEEEEcc
Q 001224          636 GCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       636 ~~~l~~~~~dg~i~iwd~~  654 (1120)
                      |+++++.+. ..+.+-|+.
T Consensus       615 Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         615 GKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             CcEEEEeec-ceEEEEecc
Confidence            999887775 466666654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.91  E-value=5.5  Score=44.80  Aligned_cols=148  Identities=10%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             cceEEEEEccCCCEEEEEe-----------CCC-CEEEEECCCc--ccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          909 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s-----------~Dg-~v~iWd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      ....+|+|.++|+++++-.           ..+ .|.+++-..+  +......+.  .+.    .....+++.++| +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEE
Confidence            3456788988888877643           223 5666654332  211111221  111    235789999999 444


Q ss_pred             EEeCCeEEEE-EcCCc-------e-eeeccccCC--CCCCeeEEEECCCCcEEEEEEcC-------------------Cc
Q 001224          975 VVHETQLAIF-ETTKL-------E-CVKQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------AT 1024 (1120)
Q Consensus       975 ~~~d~~v~i~-d~~~~-------~-~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~D-------------------g~ 1024 (1120)
                      +. ...|..| |....       + .+..+....  +......++|.|||.+.++-+..                   |.
T Consensus        87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            43 3445444 44321       1 112222210  23457889999999876655421                   34


Q ss_pred             EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224         1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus      1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
                      |.-++.++++.. .+      ..|    ..++..++|+| +++++++-..++
T Consensus       166 i~r~~pdg~~~e-~~------a~G----~rnp~Gl~~d~-~G~l~~tdn~~~  205 (367)
T TIGR02604       166 LFRYNPDGGKLR-VV------AHG----FQNPYGHSVDS-WGDVFFCDNDDP  205 (367)
T ss_pred             EEEEecCCCeEE-EE------ecC----cCCCccceECC-CCCEEEEccCCC
Confidence            444555544432 11      112    13455799999 588877654333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.57  E-value=0.5  Score=33.01  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=27.2

Q ss_pred             CCceEEEEecCCC--eEEEEEeCCCcEEEEecCCC
Q 001224          365 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGSR  397 (1120)
Q Consensus       365 ~~v~~v~~spdg~--~lla~g~~dg~i~iwd~~~~  397 (1120)
                      +.|.+++|||...  .||+..-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998544  57888888899999999853

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=91.41  E-value=8.5  Score=45.04  Aligned_cols=185  Identities=8%  Similarity=-0.015  Sum_probs=93.3

Q ss_pred             CCcEEEEEeCCC-----cEEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeCCC--CEEEEECCCccccccee
Q 001224          877 DNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRF  947 (1120)
Q Consensus       877 d~~~lasg~~dg-----~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~  947 (1120)
                      ++.++++|+.++     .+..||..+++  .+..+.........+  .-++...+.||.++  ++..||..+++-   ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W---~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW---VN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence            567777787553     46678876643  222332222222222  23677778887643  577787655321   11


Q ss_pred             eeccCCCCCCCCCCcEEEEccCCcEEEEE-eC---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224          948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus       948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
                      +....  .+   .....+..-+|+..++| .+   ..+..||..+.+-...-......... ++ ..-+|+..+.|   |
T Consensus       346 ~~~l~--~~---r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G  415 (480)
T PHA02790        346 MPSLL--KP---RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---R  415 (480)
T ss_pred             CCCCC--CC---CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---C
Confidence            11111  10   11122233466666664 33   35778888776544322211111111 22 23467666666   4


Q ss_pred             cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCC
Q 001224         1024 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1087 (1120)
Q Consensus      1024 ~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1087 (1120)
                      .+.+||..+++-...-.    .+......     +++..  ++++.+.|+.+     .++..+|+.+.+
T Consensus       416 ~~e~ydp~~~~W~~~~~----m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLIDD----PIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEcCC----CCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            57889988775543211    12111011     23333  47888888865     357788887765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.15  E-value=2.2  Score=51.84  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=94.2

Q ss_pred             CCCccEEEEccCCCEEEEEe--C-CcEEEEEcCCCceee-----eecCC------CCCeEEEEEecCCCcEEEEEeCCCc
Q 001224          824 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS  889 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~  889 (1120)
                      ...+..+.+.+|+...++..  + ..|..||+.+...-+     .+..|      ..-..++.|.|.-....|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777788877666554  3 358999987543221     12212      2235678888843345566778999


Q ss_pred             EEEEEeecc-eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          890 IQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       890 v~vwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      |+|..+.-. ..+..+. ....+++++|+|-|+.++.|-..|++.-|...-..+.   .+..+...  ....|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~--e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVE--ENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcC--CCcceeEEEEec
Confidence            998876532 2222222 4567899999999999999999999998876542211   11111111  136899999998


Q ss_pred             CCcEEEE
Q 001224          969 DQIHFLV  975 (1120)
Q Consensus       969 dg~~la~  975 (1120)
                      ...++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888877

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.76  E-value=53  Score=41.05  Aligned_cols=174  Identities=11%  Similarity=0.150  Sum_probs=104.4

Q ss_pred             CCCCccEEEEc---c----CCCEEEEEeCCcEEEEEcCCC---------------ceeeeecC---CCCCeEEEEEecCC
Q 001224          823 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD  877 (1120)
Q Consensus       823 ~~~~v~~l~~s---~----d~~~l~~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d  877 (1120)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               ..+..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46778888887   2    235777777777888772211               11222221   12356678888877


Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCC
Q 001224          878 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  957 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~  957 (1120)
                      .+.||+-+..|...||++......     +. ..          +-+.....|.| +.|.+.-                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~----------~~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SN----------LRLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence            778888888888888887211100     00 11          11112222333 2222210                 


Q ss_pred             CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC--CcEEEEEEcCCcEEEEEcCCc
Q 001224          958 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       958 ~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                       ..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++  +..++-.  ...|...++.+.
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence             133578899998899999999999999998876442333344678999999887  3333332  367888888763

These proteins are found in fungi.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.60  E-value=34  Score=38.56  Aligned_cols=152  Identities=9%  Similarity=0.046  Sum_probs=84.9

Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEE-EEEeeccee--eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc
Q 001224          868 ATFLAFHPQDNNIIAIGMDDSSIQ-IYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  944 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg~~dg~v~-vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~  944 (1120)
                      ...+..++ |+.+++.|.. |.+. -||-  |..  ...-......++++.|.+++..++.+ .+|.+ +|..+.++.-.
T Consensus       241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcC-CCCEEEEECC-ccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence            34456667 7777776653 4433 3432  221  11112234568999999998887765 55654 44444432110


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224          945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus       945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
                      ...+...... .....+..+.|.+++..+++|..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|
T Consensus       315 ~~~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        315 DFDFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             ccceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence            0011111100 011357889999999999999888766653 3343322211 11224578899998887777755 578


Q ss_pred             cEEEE
Q 001224         1024 TVCVF 1028 (1120)
Q Consensus      1024 ~v~iw 1028 (1120)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            77654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.37  E-value=26  Score=36.85  Aligned_cols=210  Identities=9%  Similarity=0.056  Sum_probs=123.1

Q ss_pred             CccEEEEccCCCEEEEEe-CCcEEEEEcC------CC-ceeeeecC-----CCCCeEEEEEecCCCc------------E
Q 001224          826 AVPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------I  880 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s-dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~  880 (1120)
                      ..+.|+++|.+.+-++.. .+...+||..      .. .++.++..     .....+.+.|+. ...            .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence            457899999987777665 6889999986      11 22333332     234577888875 222            2


Q ss_pred             EEEEeCCCcEEEEEeeccee-----eEeec-ccccce-EEEEEccC--CCEEEE-EeCCCCEEEEECCCcccccceeeec
Q 001224          881 IAIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVS-SGADSQLCVWSSDGWEKQKNRFLQI  950 (1120)
Q Consensus       881 lasg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~v~iWd~~~~~~~~~~~~~~  950 (1120)
                      ++.+++||+|.-|...-+..     ...+. +..+.| ..+++...  +.+|.. --..++|.|+|-.-.+....  -..
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~--g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP--GSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC--CCc
Confidence            46678999999998532221     12222 112333 35666533  455544 34578899998554221100  000


Q ss_pred             cCCCCCCCCCCcEEEEccCCcEEEE-E-------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC-----
Q 001224          951 PTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC----- 1011 (1120)
Q Consensus       951 ~~~~~~~~~~i~~~~fspdg~~la~-~-------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~----- 1011 (1120)
                      .+...+.......+.-- .+++.++ +             .-|.|-+||+. |..++.+...+.-...+.|+..|     
T Consensus       181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence            00000100111122111 2333333 2             22579999985 66777676666677788888866     


Q ss_pred             -CCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1012 -DSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1012 -dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                       .|.+|+----||+|-+||..+++.+..+.
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeeeec
Confidence             56777766679999999999999998877

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.13  E-value=13  Score=44.40  Aligned_cols=116  Identities=8%  Similarity=0.058  Sum_probs=76.3

Q ss_pred             ceEEEEEcC--CCCeEEEEECCCeEEEEEccC-------C----------ceeeeeeeecccccCeEEEEEc--CCCCce
Q 001224          428 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL  486 (1120)
Q Consensus       428 ~V~~l~~sp--dg~~las~~~dg~v~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~d~~~~  486 (1120)
                      .|+.|....  +...|+.|..||.|.+|.+++       .          ..+++.+.+. -...++++++.  ...+  
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence            577776655  677899999999999997632       0          0112223333 23478999997  5555  


Q ss_pred             EEEEecCCCcEEEEECCCC--ceeE-EeeccccCeEEEeeccCC---Cce-EEEEEecCCeEEEEec
Q 001224          487 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY  546 (1120)
Q Consensus       487 ~l~s~s~d~~i~vwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~---~~~-~l~s~~~dg~i~iwd~  546 (1120)
                      +||.++....|.||-....  +... .-..|...|.+|+|....   +|. .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7888888888888765442  1111 111256678888887655   233 7778888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.10  E-value=25  Score=36.18  Aligned_cols=242  Identities=11%  Similarity=0.071  Sum_probs=140.5

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      .......++-+|||..-.++. .+.|--.|-.+++....--+....-..+..-| |+..-++-+.. -|.-.|-++.+. 
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev-  136 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV-  136 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-
Confidence            345566788899998888877 67788888888887666555566677788888 55444432222 455556555442 


Q ss_pred             Eee----cccccceEEEEEccCCCEEEEEeCC---------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          902 SKL----KGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       902 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D---------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      .+|    +.-........|.++|.+-.++...         +.|++|+...             |     .....++..|
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G-----~gpyGi~atp  198 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------G-----GGPYGICATP  198 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------C-----CCCcceEECC
Confidence            222    2233456778899999888877532         3455555433             2     2457899999


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCC
Q 001224          969 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1047 (1120)
Q Consensus       969 dg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 1047 (1120)
                      ||..-+++ .+..|...|..++.........+-...-..+--+|.|+.-++....+.+.-||-.+..-+ ...    +|.
T Consensus       199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~-eyp----LPg  273 (353)
T COG4257         199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWI-EYP----LPG  273 (353)
T ss_pred             CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccce-eee----CCC
Confidence            99987774 556666667665522211111121223344555777888787777777888876654422 222    232


Q ss_pred             CCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC-CCCCCCCC
Q 001224         1048 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1095 (1120)
Q Consensus      1048 g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~p 1095 (1120)
                      .  +..-+  ++.-.- .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus       274 s--~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         274 S--KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             C--CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence            1  11112  222222 12333333445677777776655 55555555

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.06  E-value=18  Score=36.13  Aligned_cols=156  Identities=13%  Similarity=0.192  Sum_probs=84.3

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N  894 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vw---d  894 (1120)
                      ....++.++.+..+++.+.+.|.+|++.  ..+...+|..- +.|..++++. .|.+|++--.+.      .+|+|   .
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3445555553445455557889999988  34555666644 7799999999 899999864332      56665   2


Q ss_pred             ee--cceee-Eeeccc---------------------ccceEEEEEccCCCEEEEEeCCCCEEEEECCCccccc--ceee
Q 001224          895 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--NRFL  948 (1120)
Q Consensus       895 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~  948 (1120)
                      ..  ..+.+ ..+-||                     +.++.+++-.|-..-|+.|+ ++++.+|.+.......  ...+
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence            21  11111 122222                     23456666666543444444 4569999877643311  1111


Q ss_pred             eccCC---CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224          949 QIPTG---RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  987 (1120)
Q Consensus       949 ~~~~~---~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~  987 (1120)
                      .....   +.. ...+..++|  -+.|+|..++..++++.+.
T Consensus       176 DFe~~l~~~~~-~~~p~~v~i--c~~yiA~~s~~ev~Vlkl~  214 (215)
T PF14761_consen  176 DFERSLIDHID-NFKPTQVAI--CEGYIAVMSDLEVLVLKLE  214 (215)
T ss_pred             echhhhhheec-CceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence            11100   000 011122222  3567788788888877653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.86  E-value=1  Score=31.54  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             CCeEEEEEecCCC--cEEEEEeCCCcEEEEEeec
Q 001224          866 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       866 ~~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~  897 (1120)
                      +.|.++.|||..+  .+|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998555  6999999999999999985

It contains a characteristic DLL sequence motif.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.42  E-value=28  Score=37.37  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             ccEEEEccCCCEEEEEeCC-------------cEEEEEcCCCceeeeecCC------CCCeEEEEEecCCC----cEEEE
Q 001224          827 VPCFALSKNDSYVMSASGG-------------KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI  883 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~sdg-------------~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las  883 (1120)
                      |..+...+++++-+.-+..             +|.+||+.+.+.++++.-.      ......+.+...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE


Q ss_pred             EeCC-CcEEEEEeecceeeEeecccc-------------------cceEEEEEcc---CCCEEEEEeCCCCEEEEECCCc
Q 001224          884 GMDD-SSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW  940 (1120)
Q Consensus       884 g~~d-g~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~~  940 (1120)
                      .... +-|.|+|+.+++..+.+..+.                   +.+.+++.+|   |+++|.-..-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH


Q ss_pred             ccccceeeecc------CCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC----ceeeeccccCCCCCCeeEEEE
Q 001224          941 EKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----LECVKQWVPRESSAPITHATF 1009 (1120)
Q Consensus       941 ~~~~~~~~~~~------~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~----~~~~~~~~~~~h~~~v~~l~~ 1009 (1120)
                      -..........      ..-.........++++++|.+..+ ...+.|..|+..+    ........-...-..+.++.+
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i  241 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI  241 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred             HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee


Q ss_pred             CC--CCcEEEEEEc
Q 001224         1010 SC--DSQLVYACFL 1021 (1120)
Q Consensus      1010 s~--dg~~l~s~~~ 1021 (1120)
                      .+  +|.+.+..+.
T Consensus       242 ~~~~~g~L~v~snr  255 (287)
T PF03022_consen  242 DPEGDGYLWVLSNR  255 (287)
T ss_dssp             -T--TS-EEEEE-S
T ss_pred             ccccCceEEEEECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.24  E-value=1.3  Score=30.61  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCC--CcEEEE
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW  392 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~d--g~i~iw  392 (1120)
                      .......-.+.+|||||++|+.++..+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556778899999999988888887  777766

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.76  E-value=46  Score=37.46  Aligned_cols=200  Identities=10%  Similarity=-0.030  Sum_probs=102.6

Q ss_pred             ccCCCEEEEEeCCcEEEEEcCCCceeeeecCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-c
Q 001224          833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-K  909 (1120)
Q Consensus       833 s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~  909 (1120)
                      ..+++.++...+|.|.-.|..++..+.......  ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+....... -
T Consensus        66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            345655555458888888888777554332221  2233333333 565 6668889989999988898887766555 1


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEcC
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETT  987 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~~v~i~d~~  987 (1120)
                      .+..-..-.++ .+..++.|+.+...+..+++..........   ..  ..+..-....++..++...  ++.+.-+|..
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~--~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~  217 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LS--LSIYGSPAIASGTVYVGSDGYDGILYALNAE  217 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cc--cccccCceeecceEEEecCCCcceEEEEEcc
Confidence            12222222233 222333566666666666554322111110   00  0111111133344444333  4567777777


Q ss_pred             CceeeeccccCC--CCCCeeEEEECCC-----CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          988 KLECVKQWVPRE--SSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       988 ~~~~~~~~~~~~--h~~~v~~l~~s~d-----g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +|...-......  -...+........     +.-+..++.++.+...|..+|+.+-+..
T Consensus       218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            776655422100  0111100111111     1223566778889999999999998877

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.41  E-value=0.073  Score=57.85  Aligned_cols=122  Identities=20%  Similarity=0.271  Sum_probs=88.7

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      .++...+...+....++|.-+|..+++.+-..+.+.+||+.+.....                 ...-..|....  +.|
T Consensus        65 gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-----------------LE~gg~~s~sl--l~w  125 (615)
T KOG2247|consen   65 GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-----------------LESGGTSSKSL--LAW  125 (615)
T ss_pred             cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-----------------HhccCcchHHH--Hhh
Confidence            34444455667788899999998777777888999999997643211                 00111233333  789


Q ss_pred             cCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          435 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       435 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      ++.+..++.+-..|.+.|++..+.+.+.   .+..|..++++++|.+.+.   .+.++.|..+.+-.
T Consensus       126 sKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  126 SKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT  186 (615)
T ss_pred             ccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence            9999999999999999999998866443   3444999999999999986   77787777665544

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=87.99  E-value=69  Score=41.87  Aligned_cols=149  Identities=14%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      |...++.|.-+|+|+++=+   +|+.++.||.....         |...          -..-..+++.++-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence            5567777888888875322   57888888876543         2210          011233555565556666655


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC------ceeE--Eeecc
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH  514 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~------~~~~--~~~~h  514 (1120)
                         .++. .|-|+..+..-.      ..-..|.+...+++|.- .+.++-+...+.+|++...      ++..  .+.+-
T Consensus       419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence               2221 133444433111      12346777888899983 4677777777899998754      1112  22332


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      .....+|.++  .+  .|+.+..+|.++.=++..
T Consensus       488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            3345556553  32  688888899987776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.71  E-value=2.6  Score=45.69  Aligned_cols=160  Identities=13%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             CCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCcee-eeecCC-CC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATFMPP-PP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N  894 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d  894 (1120)
                      ....+..+-..|||+++.+-+..++.++++.+.... +.+-.. .+    .|+ .+..-. ++.-|.++..||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            456788899999999999988888999988754332 111111 11    122 222223 66677788899988877 5


Q ss_pred             eecce-----eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          895 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       895 ~~~~~-----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                      +..+.     .++.++-...+|..+.--.+.+-+++-+..|++.++.....+.    .+....     ...+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~----lL~~~~-----~~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL----LLFERA-----YQAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc----eehhhh-----hcCcceeeeCcc
Confidence            44321     2223333334454444444456678888889888776444221    111111     124678999999


Q ss_pred             CcEEEEEeCCeEEEEEcCCceee
Q 001224          970 QIHFLVVHETQLAIFETTKLECV  992 (1120)
Q Consensus       970 g~~la~~~d~~v~i~d~~~~~~~  992 (1120)
                      +.++++-..|+++++.+++....
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNPE  391 (733)
T ss_pred             cchheeecCCceEEEEecCCCCC
Confidence            99999988899999988765543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.53  E-value=5.4  Score=48.81  Aligned_cols=148  Identities=7%  Similarity=-0.019  Sum_probs=85.0

Q ss_pred             cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-----EEeec------cccCeEEEeeccCCCceEEEEEecCCe
Q 001224          472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-----YIFEG------HEAPVYSVCPHHKENIQFIFSTALDGK  540 (1120)
Q Consensus       472 ~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-----~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~  540 (1120)
                      -+|..+...+|+....++..+.+-.|..||+++-..-     .-+..      ......++.|.+... ...+....|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccc
Confidence            3566777778877545666666667899998753221     11111      122334555665543 23455566888


Q ss_pred             EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224          541 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       541 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      |++..+........--.-.                     ...++++|+|.|.++++|...|++.-|... ++....+..
T Consensus       180 l~V~~~~~~~~~v~s~p~t---------------------~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~  237 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVT---------------------NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE  237 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcc---------------------cceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC
Confidence            8777554322211111111                     144566677777789999999999988763 333333321


Q ss_pred             CC--CCCCcCeEEEcCCCCEEEEE
Q 001224          621 DG--GLPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       621 ~~--~~~~v~~~~~s~~~~~l~~~  642 (1120)
                      ..  ....|.+++|-....++++-
T Consensus       238 Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  238 PPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CCcCCCcceeEEEEecceeEEEEe
Confidence            11  12468899998776666654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.46  E-value=9.7  Score=48.34  Aligned_cols=69  Identities=12%  Similarity=0.146  Sum_probs=44.7

Q ss_pred             CcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          961 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       961 i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      +.+..+......+.....+.+-+|+.........+...++..       +.++..++++-.||.+..||...+.++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~h~Dgs~~fWd~s~g~~~  269 (993)
T KOG1983|consen  201 SLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-------SRDGSHFVSYHTDGSYAFWDVSSGKLQ  269 (993)
T ss_pred             cceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC-------ccCCceEEEEEecCCEEeeecCCCcee
Confidence            344444444444444455566666665555544444332222       889999999999999999999998663

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=87.44  E-value=23  Score=32.36  Aligned_cols=118  Identities=13%  Similarity=0.178  Sum_probs=0.0

Q ss_pred             ceEEEEecCCCeEEEEEeCCCcEEEEecC--------CCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--
Q 001224          367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVG--------SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--  436 (1120)
Q Consensus       367 v~~v~~spdg~~lla~g~~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--  436 (1120)
                      |+.-+|.....- |++++.-|.|.|.+..        ....+.                    +-.-...|++++-.+  
T Consensus         1 VaiGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--------------------~LNin~~italaaG~l~   59 (136)
T PF14781_consen    1 VAIGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGRQDSDIS--------------------FLNINQEITALAAGRLK   59 (136)
T ss_pred             CeEEEeCCCcee-EEEEecCCEEEEECCCccccccccccCcee--------------------EEECCCceEEEEEEecC


Q ss_pred             ---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEE----cCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          437 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       437 ---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~----s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                         +...|+.|+... +..||+.....+-    .+.-.+.|+++.+    ..+..   ++..+.+..|.-+|.+-.+...
T Consensus        60 ~~~~~D~LliGt~t~-llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~---l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   60 PDDGRDCLLIGTQTS-LLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP---LVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             CCCCcCEEEEeccce-EEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc---EEEECceEEEEEeCCCCcEEEE


Q ss_pred             Eeec
Q 001224          510 IFEG  513 (1120)
Q Consensus       510 ~~~~  513 (1120)
                      +..+
T Consensus       132 tVtg  135 (136)
T PF14781_consen  132 TVTG  135 (136)
T ss_pred             Eecc

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.30  E-value=5.9  Score=43.17  Aligned_cols=171  Identities=11%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-Eee-ccccc----ceE-EEEEccCCCEEEEEeC
Q 001224          856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA  928 (1120)
Q Consensus       856 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~  928 (1120)
                      +.++.+......+..+-..| |++.|..-+. ..+.|+++.+...- +++ ....+    .|+ ++..-..|..|..++.
T Consensus       211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            33444555566788889999 8988876654 68889988764321 111 11111    222 2222235667888999


Q ss_pred             CCCEEEE-ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeE
Q 001224          929 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 1006 (1120)
Q Consensus       929 Dg~v~iW-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~ 1006 (1120)
                      ||.|.-| |+..+....-.....+.-.   ..++..+.-..+-+-++. ...|++.++.....+.+..-.   --..+.-
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~---pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~  362 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLA---PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL  362 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccC---cccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence            9999877 5544332211111111110   011221111111222222 355666666544333322111   1236677


Q ss_pred             EEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224         1007 ATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus      1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      ++|||.+.+|++- ..|.++++.+++...
T Consensus       363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             eeeCcccchheee-cCCceEEEEecCCCC
Confidence            8999999999865 357899998876543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.26  E-value=21  Score=41.65  Aligned_cols=121  Identities=14%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             EEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--------------CC
Q 001224          914 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET  979 (1120)
Q Consensus       914 l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--------------d~  979 (1120)
                      +..-++|.+++..+  ..++.+|+... ....  .....+..   ..=..+..-|+|++|+.+.              +.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D  224 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED  224 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence            56678888887655  66777777642 1111  11111100   0014677889999888754              23


Q ss_pred             eEEEEEcCCceeeeccccCCCC-------------------------CCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCc
Q 001224          980 QLAIFETTKLECVKQWVPRESS-------------------------APITHATFSC-DSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~-------------------------~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      .|..+| .+|+.+..|....|-                         -.+.++.+.+ ++.+|+++-.-..|...|..++
T Consensus       225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            466667 777776665443321                         2477899988 6666666655568999999999


Q ss_pred             ceeeeeCCCc
Q 001224         1034 KLRCRINPSA 1043 (1120)
Q Consensus      1034 ~~~~~~~~~~ 1043 (1120)
                      +....+-...
T Consensus       304 ~i~Wilg~~~  313 (477)
T PF05935_consen  304 KIKWILGPPG  313 (477)
T ss_dssp             -EEEEES-ST
T ss_pred             cEEEEeCCCC
Confidence            9988877543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.10  E-value=14  Score=42.80  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      ..-++++.-+|.|+-++.+..||.|++|+......-+    +.....+-..+.|...|    +++...|..+.-|. ++|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG   84 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence            3467888888999999999999999999987654321    22233455667776555    56677788888887 556


Q ss_pred             ceeEEee
Q 001224          506 AKQYIFE  512 (1120)
Q Consensus       506 ~~~~~~~  512 (1120)
                      -..+.|.
T Consensus        85 vvqqqfd   91 (1636)
T KOG3616|consen   85 VVQQQFD   91 (1636)
T ss_pred             cchhhcc
Confidence            5544443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=87.09  E-value=97  Score=39.29  Aligned_cols=419  Identities=14%  Similarity=0.123  Sum_probs=0.0

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVA  444 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~  444 (1120)
                      ...+++.-|||.  |.+|..+-.=+|.--..-..+..                  +-.....-=+.+|.+| ||.+-++-
T Consensus       366 aPvala~a~DGS--l~VGDfNyIRRI~~dg~v~tIl~------------------L~~t~~sh~Yy~AvsPvdgtlyvSd  425 (1899)
T KOG4659|consen  366 APVALAYAPDGS--LIVGDFNYIRRISQDGQVSTILT------------------LGLTDTSHSYYIAVSPVDGTLYVSD  425 (1899)
T ss_pred             ceeeEEEcCCCc--EEEccchheeeecCCCceEEEEE------------------ecCCCccceeEEEecCcCceEEecC


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecccccCeEE----------------------EEEcCCCCceEEEEecCCCcEEEEEC
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND----------------------IAFSHPNKQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~----------------------v~~s~d~~~~~l~s~s~d~~i~vwd~  502 (1120)
                      -....|.--.--.++..+...+.-...+.+..                      ++|+.+|.- |++-|.   .||+-| 
T Consensus       426 p~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~l-YfaD~t---~IR~iD-  500 (1899)
T KOG4659|consen  426 PLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNL-YFADGT---RIRVID-  500 (1899)
T ss_pred             CCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcE-EEeccc---EEEEec-


Q ss_pred             CCCceeEEeeccccCeEEEee------------ccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224          503 TNGAKQYIFEGHEAPVYSVCP------------HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       503 ~~~~~~~~~~~h~~~v~~~~~------------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  570 (1120)
                      .+|-.-..+..|.....-+..            +|..    |+.--.|+++.+.|                         
T Consensus       501 ~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~----LaV~Pmdnsl~Vld-------------------------  551 (1899)
T KOG4659|consen  501 TTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTS----LAVDPMDNSLLVLD-------------------------  551 (1899)
T ss_pred             cCceEEEeccCCCCccCccccccccchhheeeecccc----eeecCCCCeEEEee-------------------------


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  650 (1120)
                                 .-..+.++++++..+..+.--...+=++.....  .+..|.......+++++++|.+.++-++...|.-
T Consensus       552 -----------~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s--kla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNr  618 (1899)
T KOG4659|consen  552 -----------TNVVLRITVVHRVRIILGRPTHCDLANATSSAS--KLADHRTLLIQRDIAVGTDGALYVAESDGRRINR  618 (1899)
T ss_pred             -----------cceEEEEccCccEEEEcCCccccccCCCchhhh--hhhhhhhhhhhhceeecCCceEEEEeccchhhhh


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      ...-+.                                                      ++.+......+.-..+..++
T Consensus       619 vr~~~t------------------------------------------------------dg~i~ilaGa~S~C~C~~~~  644 (1899)
T KOG4659|consen  619 VRKLST------------------------------------------------------DGTISILAGAKSPCSCDVAA  644 (1899)
T ss_pred             eEEecc------------------------------------------------------CceEEEecCCCCCCCccccc


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  810 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~  810 (1120)
                      ....+..+..-..          .++-..+.+++.+|||..+++-..+-.|+--.-+....+.....-..          
T Consensus       645 ~cdcfs~~~~~At----------~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~----------  704 (1899)
T KOG4659|consen  645 CCDCFSLRDVAAT----------QAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEIT----------  704 (1899)
T ss_pred             CCccccccchhhh----------ccccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeecc----------


Q ss_pred             CCcccccCCCCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEc---CCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224          811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNM---MTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  884 (1120)
Q Consensus       811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg  884 (1120)
                                  ....-.--.|+.+|...-+.+   ..++..|..   .+...+..+....+.+..+-=.. ++.....-
T Consensus       705 ------------~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~-~s~~~~~~  771 (1899)
T KOG4659|consen  705 ------------DPERQEKYTFNRHGQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDN-DSLFDLET  771 (1899)
T ss_pred             ------------CcccceeEEEeccceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecC-CCCcceee


Q ss_pred             eCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCC-CCEEEEECC
Q 001224          885 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSD  938 (1120)
Q Consensus       885 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~  938 (1120)
                      ..+|.+..--......++.+......-..+.+.-....|++-..| |.-.+|+.+
T Consensus       772 ~~~~q~~~l~~~~~g~L~~vSt~d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYD  826 (1899)
T KOG4659|consen  772 TLGGQTTLLMSAYDGTLEQVSTRDATSRDATYLGYTGLLLTKRDDTGTAVVYEYD  826 (1899)
T ss_pred             cCCCcEEEEEEecCCceeEeccCCCccceeeeeccccceeeeecccceEEEEccc

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.69  E-value=36  Score=37.46  Aligned_cols=174  Identities=17%  Similarity=0.195  Sum_probs=94.3

Q ss_pred             ccccEEEEEEcCCCceEEEeccCce------EEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          756 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                      .-+.+.++.+.+++..+++.+.+|.      +...++..... ..........+.+-+.. |.....      ......+
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~~------~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFPK------NGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCCc------CCCChhH
Confidence            3466788999976666777777776      55444433111 01111111111222221 221110      2236678


Q ss_pred             EEEccCCCEEEEEe-C------CcEEEEEcCCCceeeeec---------------CCCCCeEEEEEecCCCcEEEEEeC-
Q 001224          830 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD-  886 (1120)
Q Consensus       830 l~~s~d~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~-  886 (1120)
                      |++.++|.++++.- +      ..|+.++.. ++....+.               .......+|+++| |++.|.++.+ 
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~  167 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES  167 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence            88888888777765 5      668888866 55544431               1234588999999 7885555442 


Q ss_pred             ----CC--c-------EEEEEee--c-cee----eEeecc-----cccceEEEEEccCCCEEEEE-----eCCCCEEEEE
Q 001224          887 ----DS--S-------IQIYNVR--V-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS  936 (1120)
Q Consensus       887 ----dg--~-------v~vwd~~--~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~v~iWd  936 (1120)
                          |+  .       ++++...  + ++.    ...+..     ....|+.+.+-+++++|+-=     +....++|+.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~  247 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR  247 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence                22  1       5555443  3 222    222332     34668888888888877632     1234455555


Q ss_pred             CCC
Q 001224          937 SDG  939 (1120)
Q Consensus       937 ~~~  939 (1120)
                      +..
T Consensus       248 v~l  250 (326)
T PF13449_consen  248 VDL  250 (326)
T ss_pred             EEc
Confidence            443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.53  E-value=62  Score=36.45  Aligned_cols=206  Identities=15%  Similarity=0.099  Sum_probs=104.5

Q ss_pred             EecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEE
Q 001224          372 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ  451 (1120)
Q Consensus       372 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~  451 (1120)
                      ..-||+  +.++..+|.|.-.|.++++.+-...+                . +....+..-.+..+|+ |..++.++.+.
T Consensus        65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~W~~~~----------------~-~~~~~~~~~~~~~~G~-i~~g~~~g~~y  124 (370)
T COG1520          65 ADGDGT--VYVGTRDGNIFALNPDTGLVKWSYPL----------------L-GAVAQLSGPILGSDGK-IYVGSWDGKLY  124 (370)
T ss_pred             EeeCCe--EEEecCCCcEEEEeCCCCcEEecccC----------------c-CcceeccCceEEeCCe-EEEecccceEE
Confidence            344554  66667888888888888876532111                0 0011122222222666 77788888888


Q ss_pred             EEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc---CeEEEeeccCCC
Q 001224          452 IYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN  528 (1120)
Q Consensus       452 iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~  528 (1120)
                      .+|..+|+.+... ...+. -.+..-....++.   +..++.++.+.-.|..+|+.+.....-..   .+..--.  ..+
T Consensus       125 ~ld~~~G~~~W~~-~~~~~-~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~  197 (370)
T COG1520         125 ALDASTGTLVWSR-NVGGS-PYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IAS  197 (370)
T ss_pred             EEECCCCcEEEEE-ecCCC-eEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce--eec
Confidence            9999888765422 22220 1222223334443   44454788888888888888766543221   1110000  112


Q ss_pred             ceEEEEEec--CCeEEEEecCCCCCceeeeCC----CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          529 IQFIFSTAL--DGKIKAWLYDNLGSRVDYEAP----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       529 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                       ..++.+..  ++.+.-.|..++.........    ...+........+ .++            .  + ..+..++.++
T Consensus       198 -~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v~------------v--~-~~~~~~~~~g  260 (370)
T COG1520         198 -GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PVY------------V--D-GGVYAGSYGG  260 (370)
T ss_pred             -ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eEE------------E--C-CcEEEEecCC
Confidence             23444444  444555555554444332110    0000000000000 000            0  1 1246677788


Q ss_pred             eEEEEECCCCceeEEEecC
Q 001224          603 SIKFWDMDSVQLLTSIDAD  621 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~~~  621 (1120)
                      .+...|..+++.+..+...
T Consensus       261 ~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         261 KLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eEEEEEcCCCceEEEEecc
Confidence            8999999999998888753

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.12  E-value=21  Score=40.08  Aligned_cols=93  Identities=10%  Similarity=0.102  Sum_probs=63.2

Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC---CEEEEEeCCC
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDDF  602 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg  602 (1120)
                      ++.|..++-.|.+|.+.++-.+.-+....+......|.+-.++-+ .+++.....-.+..++|+|+.   ..|+.-+.|.
T Consensus       112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdn  190 (741)
T KOG4460|consen  112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDN  190 (741)
T ss_pred             cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCceEEEEecCc
Confidence            456678888888888877654433444444444444555554443 356666666677788999975   6788889999


Q ss_pred             eEEEEECCCCceeEEEe
Q 001224          603 SIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~  619 (1120)
                      .|++||+.....+....
T Consensus       191 viRiy~lS~~telylqp  207 (741)
T KOG4460|consen  191 VIRIYSLSEPTELYLQP  207 (741)
T ss_pred             EEEEEecCCcchhhccC
Confidence            99999998877664443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.01  E-value=24  Score=41.60  Aligned_cols=94  Identities=16%  Similarity=0.255  Sum_probs=57.0

Q ss_pred             CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224          887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  966 (1120)
Q Consensus       887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  966 (1120)
                      --.|+||++. |.++..+.-....+-.+.|+.+ ..|+....||++.||++-.........     |.......|..+.|
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~  135 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRF  135 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEE
Confidence            3468888854 6666555444447889999966 466677899999999987643322111     11111124666666


Q ss_pred             ccCCcEEEEEeCCeEEEEEcC
Q 001224          967 HQDQIHFLVVHETQLAIFETT  987 (1120)
Q Consensus       967 spdg~~la~~~d~~v~i~d~~  987 (1120)
                      ..+|..+.+.++..+.+.+..
T Consensus       136 f~~GVavlt~~g~v~~i~~~~  156 (829)
T KOG2280|consen  136 FHNGVAVLTVSGQVILINGVE  156 (829)
T ss_pred             ecCceEEEecCCcEEEEcCCC
Confidence            667766665544445554443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.93  E-value=3.5  Score=40.45  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCC------CeEEEEECCCeEEEEEccC
Q 001224          427 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG  457 (1120)
Q Consensus       427 ~~V~~l~~spdg------~~las~~~dg~v~iwd~~~  457 (1120)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            389999999943      4788899999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.53  E-value=4.7  Score=41.15  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccccc-------CCCCceEEEEEcCCCCeEEE
Q 001224          371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~spdg~~las  443 (1120)
                      .+..++.+ |++-+.+|.+++||+.+++.+... ..+.           .++.       .....|..+.++.+|.-|++
T Consensus        17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~   83 (219)
T PF07569_consen   17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT   83 (219)
T ss_pred             EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence            35667886 777788999999999998877631 1111           1222       46678999999988888777


Q ss_pred             EECCCeEEEEEccCC
Q 001224          444 AYSRHIVQIYSYHGG  458 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~  458 (1120)
                      -+ +|....|+.+-+
T Consensus        84 ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   84 LS-NGDSYSYSPDLG   97 (219)
T ss_pred             Ee-CCCEEEeccccc
Confidence            65 467888877644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.43  E-value=63  Score=35.53  Aligned_cols=67  Identities=7%  Similarity=-0.057  Sum_probs=36.4

Q ss_pred             CCcEEEEEe------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC----cEEEEEcCCccee
Q 001224          969 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKLR 1036 (1120)
Q Consensus       969 dg~~la~~~------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----~v~iwd~~~~~~~ 1036 (1120)
                      +++..+.|.      ...+..||..+.+-...-.... .......+...++++.+.|+.++    .+.+||..+.+-.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            555555542      1368889988765433211111 11222233344677777787664    3568888876643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.90  E-value=6.2  Score=43.10  Aligned_cols=123  Identities=11%  Similarity=0.128  Sum_probs=80.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ..++|.++.||+|.+ ++|+--.|++|.+.+....+......               ...+.-+..|....|+.+ .-+|
T Consensus        65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A  127 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA  127 (657)
T ss_pred             CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence            456999999999999 79999999999999985443322100               012223446899999876 6677


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      ..+..| +-+|.+...+  +.....+.|...|.--.|+++..-.+++|+-..+++.=+-++++
T Consensus       128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            766666 7777665432  12224556888999999999988533344434444444444443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.85  E-value=80  Score=36.27  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      .+.....|.++.+.-.|.  +-+|+.|| +..||..+++.+....-                  ....+|.++.-+-.|+
T Consensus       160 ~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg~  218 (671)
T COG3292         160 PLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQGR  218 (671)
T ss_pred             ccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcCc
Confidence            334678899999999997  55566655 45677777776653110                  1113566666555554


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                       |.+|+.+| |.+.+.++.+.....  ..-..+.|..+.=..+|.   +-.|+..|..
T Consensus       219 -LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~  269 (671)
T COG3292         219 -LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLW  269 (671)
T ss_pred             -EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccce
Confidence             56677777 777776663211100  001234455555444454   5555555543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.49  E-value=8.8  Score=48.05  Aligned_cols=160  Identities=13%  Similarity=0.177  Sum_probs=98.3

Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc--------cCCCEEEEEeCCCCEEEEECCCcc
Q 001224          870 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWE  941 (1120)
Q Consensus       870 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~v~iWd~~~~~  941 (1120)
                      .+-+-|.=++.-+  +.|..+.+|+.+++.....+.+-+..|..|..-        |.=++|...+.--.|.++-+.-.+
T Consensus        83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            3334442344333  458899999999988788888888888887653        222344444444557777554332


Q ss_pred             cccc--eeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE--EEEcCCc----eee-------------ec-ccc-C
Q 001224          942 KQKN--RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL----ECV-------------KQ-WVP-R  998 (1120)
Q Consensus       942 ~~~~--~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~--i~d~~~~----~~~-------------~~-~~~-~  998 (1120)
                      ....  .....+. .......|.++....+|+.+.+|.||.|.  +|....+    +|.             .. +.. .
T Consensus       161 ~~~~~~~f~~~~~-i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  161 FTGELSIFNTSFK-ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             ccCccccccccee-eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence            2111  1111100 00112467888988999999999888444  2222221    111             00 111 2


Q ss_pred             CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      .+..+|..++.......|.+=++-|+|.+||+..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            4577999999988888899999999999999976

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.69  E-value=77  Score=35.15  Aligned_cols=199  Identities=8%  Similarity=0.095  Sum_probs=107.6

Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec---CCCcE--EEEEe-CC---CcEEEEEeec--ceee
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP---QDNNI--IAIGM-DD---SSIQIYNVRV--DEVK  901 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp---~d~~~--lasg~-~d---g~v~vwd~~~--~~~~  901 (1120)
                      |...+++... .+.+.+||+.. +.+..+.  .+..+.+..-.   -+++.  ||.++ .+   ..|++|.+..  +. +
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence            3444555555 68899999974 5555554  23455444332   02332  34443 32   4699998873  43 3


Q ss_pred             Eeecc-------cccceEEEEEc--c-CCC-EEEEEeCCCCEEEEECCCccc--ccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          902 SKLKG-------HSKRITGLAFS--H-ALN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       902 ~~l~~-------h~~~V~~l~~s--~-d~~-~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      ..+..       -...+..+|+-  + +|. +++..+.+|.+..|.+.....  .....++.+...    ..+..|+...
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDD  217 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDD  217 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEET
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEec
Confidence            33321       12346778774  3 454 556778889999888863221  222334433332    2578888888


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCc-----eeeeccccCCCCCCeeEEEEC--CCCc-EEEEEE-cCCcEEEEEcCC-cceee
Q 001224          969 DQIHFLVV-HETQLAIFETTKL-----ECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRC 1037 (1120)
Q Consensus       969 dg~~la~~-~d~~v~i~d~~~~-----~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~-~Dg~v~iwd~~~-~~~~~ 1037 (1120)
                      ...+|.++ .+..|.-|+.+..     +.+......+....|-.|++-  .+++ ||++.+ .+++..||+... ...+.
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g  297 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG  297 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence            88888887 5567888887522     222222222336678888874  3443 555554 467899999875 45555


Q ss_pred             eeC
Q 001224         1038 RIN 1040 (1120)
Q Consensus      1038 ~~~ 1040 (1120)
                      .+.
T Consensus       298 ~f~  300 (381)
T PF02333_consen  298 SFR  300 (381)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.37  E-value=79  Score=39.18  Aligned_cols=249  Identities=12%  Similarity=0.058  Sum_probs=114.4

Q ss_pred             EEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224          763 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  842 (1120)
Q Consensus       763 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~  842 (1120)
                      .++..-|+.+..|+.+|.+.+|.+........... ..         .......    .-+..+|..+...+.-..+.+-
T Consensus        20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~~----~~~kk~i~~l~~~~~~~~ll~l   85 (877)
T KOG2063|consen   20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFEK----EFSKKPINKLLVCASLELLLIL   85 (877)
T ss_pred             hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHhh----hhccchhHHHhhcchhcchhee
Confidence            34455677899999999999998754322111000 00         0000000    1135677777777777778888


Q ss_pred             eCCcEEEEEcCCCceeeeecCCCCCeEEEEEe--cCC-C--cEEEEEe-CCCcE-EEEEeecceeeEeecccccceEEEE
Q 001224          843 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDSSI-QIYNVRVDEVKSKLKGHSKRITGLA  915 (1120)
Q Consensus       843 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~lasg~-~dg~v-~vwd~~~~~~~~~l~~h~~~V~~l~  915 (1120)
                      +|+.|.++++.+.+... ...+-.++...++.  +.. +  .+.+... ....+ ..|+-+.+-.+..--+-.....+++
T Consensus        86 ~dsqi~~~~l~~~~~~~-~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  164 (877)
T KOG2063|consen   86 SDSQIAVHKLPELEPVP-SGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA  164 (877)
T ss_pred             cCCcceeeecCcccccc-cccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence            89999999987765521 11111111111111  000 1  1222222 11111 1222222211111111111222233


Q ss_pred             EccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeec-
Q 001224          916 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-  994 (1120)
Q Consensus       916 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~-  994 (1120)
                      |  .+..+.++-.+....+|.-.++......+......     ..-..+.--+++..++.+.|+...+-|.......+. 
T Consensus       165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~  237 (877)
T KOG2063|consen  165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT  237 (877)
T ss_pred             c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence            3  34444444443444455444432211111111100     112344555667677777777766666432221111 


Q ss_pred             cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224          995 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
                      +..   .....++.+  +.-|+++- .++.|.||+..++.+++.+
T Consensus       238 l~w---s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI  276 (877)
T KOG2063|consen  238 LVW---SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI  276 (877)
T ss_pred             eEe---cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence            000   111222222  45566655 4669999999999888776

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.04  E-value=4.9  Score=47.82  Aligned_cols=134  Identities=13%  Similarity=0.109  Sum_probs=78.6

Q ss_pred             CceEEEEecC-CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCC---CCcccccccccCCCCceEEEEEc--CCCC
Q 001224          366 SPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALVKDPGVSVNRVIWS--PDGS  439 (1120)
Q Consensus       366 ~v~~v~~spd-g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~h~~~V~~l~~s--pdg~  439 (1120)
                      .|+.|....= ++.+|+.+..||.|.+|.+++=-......  .-+...   .....+. ....-...++.+++.  ...+
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCC-eEeecCCceeEEEEEecCcce
Confidence            3455544432 23478999999999999874310000000  000000   0000011 122234589999999  8889


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCC----ceEEEEecCCCcEEEEEC
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~----~~~l~s~s~d~~i~vwd~  502 (1120)
                      +||+++....|.||-......-.....-..|...|-+|+|.++..    ...+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            999999999899886654211111101113566899999987651    136888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=82.30  E-value=80  Score=39.33  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee----CCCc----ccCCCCCCCCc-cceEEEecCCCCCEEEE
Q 001224         1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSSNV-HPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus      1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~----~~~~----~~~~g~~~~~v-~~~~i~~~p~d~~~l~s 1071 (1120)
                      .+.|.+++...-+.+++.+..||+|.++|-.+.+.+...    ....    ....|-+-..+ .++.++|||+ +..++.
T Consensus       259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-~c~~v~  337 (753)
T PF11635_consen  259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-MCSLVQ  337 (753)
T ss_pred             CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcc-cceEEE
Confidence            567889998888889999999999999999888776554    2111    11111100000 2345899995 778888


Q ss_pred             EeCCCcEE
Q 001224         1072 GLSDGGVH 1079 (1120)
Q Consensus      1072 ~~~Dg~v~ 1079 (1120)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            88888866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.29  E-value=31  Score=39.35  Aligned_cols=113  Identities=11%  Similarity=0.060  Sum_probs=61.0

Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC-CCCCCCcEEEEccCC------cEEEEE--e
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ------IHFLVV--H  977 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fspdg------~~la~~--~  977 (1120)
                      .-..-+.|+|.|||++|++--..|.|++++-.++....  ......-.. ........++|+|+-      .+|.++  .
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            34557899999999888876556999999765543211  111110000 013567899999885      234332  1


Q ss_pred             ---------CCeEEEEEcCCc-------ee-eeccccCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224          978 ---------ETQLAIFETTKL-------EC-VKQWVPRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus       978 ---------d~~v~i~d~~~~-------~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
                               ...|.-|.+...       +. +..+.. .....-..|+|.|||.+.++.+..
T Consensus       106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~-~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPA-GNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCC-CCCcCCceEEECCCCcEEEEECCC
Confidence                     223444554321       11 111111 111224567899999877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.12  E-value=69  Score=33.48  Aligned_cols=187  Identities=13%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeEeecccccce
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI  911 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V  911 (1120)
                      ++++..+. +..+++.|+.+......+..-...-.+-.+.- .|++..++..|.-+-+.|+.+   -.+..........-
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~  174 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT  174 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc


Q ss_pred             EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCcee
Q 001224          912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  991 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~  991 (1120)
                      ..++.|  |++-..+..|+-+.|-|+..      ..-..+.++......+..+..+++-.+++.. +..+.+-|..+-..
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvlivd~s~~ss  245 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPSS  245 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEEEecCCCCC


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      ...+-......++.--.|.--+++...+..+.-+-+-|+++
T Consensus       246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             ceEeeccccCCcccccceecccceeeeeccccCceeEeccC

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.05  E-value=39  Score=43.11  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=28.6

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCcee
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL  400 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~  400 (1120)
                      .....++|+|... ++|.|+..|.|.++-...-+..
T Consensus        36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~   70 (993)
T KOG1983|consen   36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV   70 (993)
T ss_pred             CCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence            4667889999998 7999999999999987654433

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.99  E-value=81  Score=34.20  Aligned_cols=210  Identities=10%  Similarity=-0.024  Sum_probs=101.7

Q ss_pred             CCCCccEEEEccCCCEEEEEeCCc--EEEEEcCCCce---------------eeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKT---------------MATFMPPPPAATFLAFHPQDNNIIAIGM  885 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~sp~d~~~lasg~  885 (1120)
                      +...|+++.+.+..+.+++-+|..  ++++++.....               ....-++......++........++++.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            567899999999999888888665  99999853221               0111233333444444431122333344


Q ss_pred             CCCcEEEEEeecc--e--eeEee---c-ccccceEEEEEccC--CCEEEEEeCCCCEEEEECCC--cccccceeeeccCC
Q 001224          886 DDSSIQIYNVRVD--E--VKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG  953 (1120)
Q Consensus       886 ~dg~v~vwd~~~~--~--~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~--~~~~~~~~~~~~~~  953 (1120)
                      ...+|.++.....  +  ....+   . .-..++..+..+++  ...|+.|+..+...++++..  ...... .+.... 
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~-  198 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLS-  198 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccc-
Confidence            4556766544321  1  11110   0 01123333333333  45677776643345555543  111000 000000 


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224          954 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       954 ~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      ... .....++..-+++.+|++ .|.....-|.......+.... .-...+.++++.  ..||++-. +..|.|+++.++
T Consensus       199 ~~~-~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~  272 (302)
T smart00036      199 EET-SLKPISVVQVPRDEFLLC-YDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG  272 (302)
T ss_pred             ccc-ccCceEEEEECCCeEEEE-ECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence            000 001233433445544444 444444555442122111111 114456677775  46666554 566999999999


Q ss_pred             ceeeeeC
Q 001224         1034 KLRCRIN 1040 (1120)
Q Consensus      1034 ~~~~~~~ 1040 (1120)
                      +++..+.
T Consensus       273 ~l~q~i~  279 (302)
T smart00036      273 ELLQELA  279 (302)
T ss_pred             ceEEEEe
Confidence            9988776

Unpublished observations.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.70  E-value=8.8  Score=39.21  Aligned_cols=71  Identities=10%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             EcCCCCeEEEEECCCeEEEEEccCCceeeeeee----ec-------ccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224          434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE----ID-------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~----l~-------~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~  502 (1120)
                      +..++.+|++.+.+|.+++||+.+++.+.....    +.       .....|..+.++.+|.  -+++-+ +|....||.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence            456799999999999999999999876532211    22       2456788888887777  355544 467788875


Q ss_pred             CCCce
Q 001224          503 TNGAK  507 (1120)
Q Consensus       503 ~~~~~  507 (1120)
                      .-+.-
T Consensus        95 ~L~~W   99 (219)
T PF07569_consen   95 DLGCW   99 (219)
T ss_pred             cccee
Confidence            54443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.66  E-value=18  Score=35.51  Aligned_cols=151  Identities=12%  Similarity=-0.021  Sum_probs=91.8

Q ss_pred             CCCEEEEEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccc
Q 001224          919 ALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       919 d~~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~  996 (1120)
                      +|.++.+.+.-  ..|++||+.+++......+.. +...     -..+.-..|.-+..+-.++.-..||.++.+++..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~F-----gEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVF-----GEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC-cccc-----ccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            45667776654  359999999887655544441 1100     012223344556666789999999999999998876


Q ss_pred             cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224          997 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus       997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
                      ..   +.=+.++  .|++.|..+....+++.-|-.+.....++........   -...+  -+.|-  ||...+-.-.+.
T Consensus       129 y~---GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p---v~~LN--ELE~V--dG~lyANVw~t~  196 (262)
T COG3823         129 YE---GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP---VSKLN--ELEWV--DGELYANVWQTT  196 (262)
T ss_pred             cC---Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee---ccccc--ceeee--ccEEEEeeeeec
Confidence            53   3445555  3666677665556677777777666655441111100   01122  34555  477777777777


Q ss_pred             cEEEEecCCCC
Q 001224         1077 GVHVFEPLESE 1087 (1120)
Q Consensus      1077 ~v~vW~~~~~~ 1087 (1120)
                      .|..-++.+|+
T Consensus       197 ~I~rI~p~sGr  207 (262)
T COG3823         197 RIARIDPDSGR  207 (262)
T ss_pred             ceEEEcCCCCc
Confidence            77777777777

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.45  E-value=20  Score=45.11  Aligned_cols=170  Identities=13%  Similarity=0.205  Sum_probs=98.0

Q ss_pred             CCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       352 ~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      ..|..+..-++|...=+.+-+-|.=.+.-+  +.|+.+.+|+.+++.....                   +.+-...|..
T Consensus        66 ~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~  124 (1311)
T KOG1900|consen   66 NIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILK  124 (1311)
T ss_pred             cCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhee
Confidence            345555555555555555555554332333  4679999999998654442                   3344445555


Q ss_pred             EEE--------cCCCCeEEEEECCCeEEEEEccCCcee------eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          432 VIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEV------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       432 l~~--------spdg~~las~~~dg~v~iwd~~~~~~~------~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      |..        -|.=++|..-+.--.|.|+-+.-.+..      .....+.-....|+|++...+|+   ++-+|.||  
T Consensus       125 V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--  199 (1311)
T KOG1900|consen  125 VGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--  199 (1311)
T ss_pred             eeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--
Confidence            543        334456665555566777654322111      11112222345789999888888   55555566  


Q ss_pred             EEEEC----CCC---c-e----------------eEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224          498 KVWDA----TNG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  549 (1120)
Q Consensus       498 ~vwd~----~~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  549 (1120)
                      .+|.+    .+|   + |                +-.+. .+..+|..+.+..  ....+++-+..|+|.+||+...
T Consensus       200 ~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  200 NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccCC
Confidence            44543    221   1 1                11122 4677898888743  4468999999999999999763

>PRK13613 lipoprotein LpqB; Provisional

Probab=80.31  E-value=1.3e+02  Score=36.16  Aligned_cols=191  Identities=9%  Similarity=-0.026  Sum_probs=99.3

Q ss_pred             CccEEEEccCCCEEEEEe-CC-cEEEEEcCCCce----e-eeecCCCCCeEEEEEecCCCcEEEEEeC--CCc--EEEEE
Q 001224          826 AVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKT----M-ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSS--IQIYN  894 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s-dg-~i~vwd~~~~~~----~-~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~--v~vwd  894 (1120)
                      .+.+.+.++++..+|... ++ .+++..+..+..    . ..+.  ....+.-.|.+ ++ .+-+...  ++.  +++..
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~  439 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ  439 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence            678899999999888776 44 466665533322    1 1122  23466667777 44 3333322  222  55554


Q ss_pred             eecceee--Eeecccc-cceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          895 VRVDEVK--SKLKGHS-KRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       895 ~~~~~~~--~~l~~h~-~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      - +++..  ... ... ..|+.+..|+||-.++....   .+.|.|=-+.....-. ..+..+..-......+..++|..
T Consensus       440 ~-~G~~~~V~~~-~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~  516 (599)
T PRK13613        440 G-DGEPVEVRTP-ELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAG  516 (599)
T ss_pred             C-CCcEEEeecc-ccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcC
Confidence            2 34332  111 222 37999999999988775443   3556555444322211 11111111111123589999999


Q ss_pred             CCcEEEEE--eC--CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEEcCCcE
Q 001224          969 DQIHFLVV--HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATV 1025 (1120)
Q Consensus       969 dg~~la~~--~d--~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v 1025 (1120)
                      ++.+++.+  ..  ..+....+.........  .+.-..+..|+-..+.+ .|+.+..++.|
T Consensus       517 ~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        517 DSQLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             CCEEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            99988754  23  33444444422221111  12244566677776666 44443455554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.17  E-value=1.1e+02  Score=34.56  Aligned_cols=151  Identities=9%  Similarity=-0.017  Sum_probs=82.6

Q ss_pred             eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001224          911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  990 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~  990 (1120)
                      ...+..++||.+++.+..-..++-||--.  . ....+....     ...+..+.|.+++..++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~--~-~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ--P-YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCC--c-ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            44456678887777665443333344321  0 001122111     13678999999999998887777544 333332


Q ss_pred             -----eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          991 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       991 -----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                           .........-...+.++.|.+|+..+++| .+|.+.... +.|+.=.+.......     ..+.+  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence                 11211111113458999999888876655 578777654 445443332211111     12255  788876  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001224         1066 PNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW 1081 (1120)
                      .+.....+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3455555568887655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1120
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		1e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 98   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 157  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 205  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 100  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 159  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 207  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 72   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 131  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 179  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 77   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 136  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 184  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 81   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 140  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 188  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 221

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 93   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 152  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 200  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 876  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 935
             D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 74   SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 936  SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 989
                          + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 134  -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 990  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 181  QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1025
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 608 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 937  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 990
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 991  CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1022
            C+K  +  + + P++   FS + + + A  LD
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
           SV  V +SPDG     A     V++++ +G  ++ Q L    H   VN +AF  P+ Q  
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
           + +  DDKT+K+W+  NG       GH + V+ V      + Q I S + D  +K  L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
             G  +                   +T  G      GV  F        +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 608 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 650
           + +  QLL ++    G  +S R + F+ DG  +A +++D  +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 525 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 563
             +NI++I + + D  +  W         + G   DY        E P       G   +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 564 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 602
               S  G     G    +L V                       +D  + R ++A  D 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 603 SIKFWDMDSVQLLTSIDADGGLPASPRI 630
           +I+ WD+++ +L+ ++     L    R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 525 HKENIQFIFSTALDGKIKAW 544
             +NI++I + + D  +  W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
           D+ KT +   N+      +DFHP +   +L     G + LW      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 411
           D+ KT +   N+      +DFHP +   +L     G + +W   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 412 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 471
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 591 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 620
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 403 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 461
           R+  VWD+ +   + L+  LV     +VN V    D      A     +++++    + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 462 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 521
           R    ++ H  G+  + +    +   V++   D TI++WD   GA   + EGHE  V  +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 581
              +K     I S A DGKIK W   +L + +D  AP            GT   +   + 
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 582 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 609
           S  V +    + + +++  D +I  WD 
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 546
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 602
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 603 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 640
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 641 VSTNDNGIKILATSDGIR 658
               DN +++   + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 546
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 602
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 603 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 640
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 641 VSTNDNGIKILATSDGIR 658
               DN +++   + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
           +  H   V  + F HP   + +++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 586
            + + + S + D  IK W +                       +  RT  G    ++  V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 646
                 +  ++A  D +IK W++ +   + +    G       +R N+DG L+A  +ND 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 647 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 682
            ++  ++AT +    LR   ++    S   E+S  +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 488
           V  V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 545
           ++   D+TIK+W+     K  I EG E    +  C     N     I S + D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 592
             N   R        + +T+A S DG+    G +   + +      K             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 593 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 621
                NR+ L A  +  IK WD++S  ++  +  D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415
           ++ R  N  SS  ++ F+  Q  +L  G N G+I                 +WD+  C+ 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 416 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 468
                    PG    SV+ VI   W+     +F  A S +   I+      EV  HL   
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 469 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 520
           +   G+     +   HP     V T     +D +I +WD  N     Q + +GH+  + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 562
           +   H++    + S+  D  +  W  ++      + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 522
           H  +  H   V+D+A S  N     I+   DKT+++WD   G     F GH++ VYSV  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 523 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 568
            P +++    I S   + +IK W  L +   S  + E    W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 428  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 488  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 548  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 606
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 607  WDMDSVQLLTS 617
            W++   QLL S
Sbjct: 1161 WNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 428  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 488  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 548  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 606
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 607  WDMDSVQLLTS 617
            W++   QLL S
Sbjct: 1154 WNVSDGQLLHS 1164

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 525
           +AH   ++D    +  K+L   TC  DKTIK+++      + I    GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
            +    + S + DGK+  W  +N          GRW
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN----------GRW 89

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 498
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 499 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 513 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 570
           GH APV  +  CPH   N   I S + D  +  W   + G  +    P            
Sbjct: 79  GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 630
              T +G  KR   V    T +N  L+AG D  I  WD+ +   + ++  D        +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 631 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 680
            +++DG L+  S  D  ++++    G         +  +  R  E ++P 
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1120
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.63
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.47
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.46
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.21
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.14
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.12
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.09
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.01
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.98
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.93
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.88
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.81
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.71
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.7
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.67
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.65
3ott_A	758	Two-component system sensor histidine kinase; beta	98.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.62
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.58
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.55
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.48
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.46
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.33
3ott_A	758	Two-component system sensor histidine kinase; beta	98.32
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.29
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.27
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.26
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.2
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.04
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.94
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.86
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.7
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.7
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.48
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.46
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.61
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.5
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.38
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.34
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.27
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.03
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.72
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.6
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	95.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.53
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.36
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.0
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.99
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.96
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.92
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	94.92
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	94.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.39
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.27
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.2
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.01
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.59
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.47
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	89.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.55
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	84.01
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.1
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	82.14
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	80.27

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-66  Score=631.44  Aligned_cols=565  Identities=23%  Similarity=0.362  Sum_probs=468.7

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      ++.+|.+.|+||+|||||++ ||+|+.|++|+|||. +++.+.                   .+.+|.+.|++++|||||
T Consensus        11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg   69 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG   69 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred             EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence            45579999999999999995 999999999999995 566655                   378999999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      ++||+++.|++|+|||+. ++.+.   .+.+|.+.|.+++|+|+++  ++++++.|+.+++|+.. ........+|...|
T Consensus        70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v  142 (577)
T 2ymu_A           70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSV  142 (577)
T ss_dssp             SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCE
T ss_pred             CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCce
Confidence            999999999999999975 44443   6889999999999999999  79999999999999965 45566778899999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      ..+.+.+  ++..+++++.++.+++|+... ........+...+..                     +.++|++.+++++
T Consensus       143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~---------------------~~~~~~~~~l~~~  198 (577)
T 2ymu_A          143 WGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWG---------------------VAFSPDGQTIASA  198 (577)
T ss_dssp             EEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEE---------------------EEECTTSSCEEEE
T ss_pred             eeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceee---------------------eeecCCCCEEEEE
Confidence            9998755  457899999999999998643 233333444444444                     4455555689999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      +.||.|++||. +++.+..+..+.  ..|.+++|+|++++|++++.|+.|++|+...  +.+..+.+|...+.       
T Consensus       199 ~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~v~-------  266 (577)
T 2ymu_A          199 SDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVN-------  266 (577)
T ss_dssp             ETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECCCSSCEE-------
T ss_pred             cCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEEecCCCCEE-------
Confidence            99999999996 667778887664  4799999999999999999999999999643  34444554443322       


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                        .+.+.+++..+++++.|+.+++|+...    .....+    .+|..
T Consensus       267 ----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~~  304 (577)
T 2ymu_A          267 ----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHSS  304 (577)
T ss_dssp             ----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCSS
T ss_pred             ----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCCC
Confidence                                              234567889999999999999999653    122222    35889


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      .|.+++|+|++..+++++.|+.+++|+....                      ....  +.  +|...+.+++|+|++++
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~~  358 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQT  358 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSSE
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCCE
Confidence            9999999999999999999999999986321                      1111  12  27889999999999999


Q ss_pred             EEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEc
Q 001224          839 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      +++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++|+.|+.|++||. +++.+..+.+|...|++++|+
T Consensus       359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s  435 (577)
T 2ymu_A          359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS  435 (577)
T ss_dssp             EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence            99998 899999995 5678888999999999999999 9999999999999999995 577889999999999999999


Q ss_pred             cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccc
Q 001224          918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~  996 (1120)
                      ||+++|++++.|++|++||...      ..+....+|.   ..|.+++|+||+++|++ +.|+.|++||. +++++..+.
T Consensus       436 ~d~~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~  505 (577)
T 2ymu_A          436 PDDQTIASASDDKTVKLWNRNG------QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  505 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEETTS------CEEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCC------CEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence            9999999999999999999754      2334445555   37999999999999999 48899999995 677777766


Q ss_pred             cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224          997 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus       997 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
                        +|...|++++|+|||++|++++.||.|+|||. +++.+..+.       +|... |.  +++|+| |+++|++++.||
T Consensus       506 --~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D~  571 (577)
T 2ymu_A          506 --GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSDK  571 (577)
T ss_dssp             --CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETTS
T ss_pred             --CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCCC
Confidence              88999999999999999999999999999996 677777766       44333 65  899999 689999999999


Q ss_pred             cEEEEe
Q 001224         1077 GVHVFE 1082 (1120)
Q Consensus      1077 ~v~vW~ 1082 (1120)
                      +|++||
T Consensus       572 ~i~~Wd  577 (577)
T 2ymu_A          572 TVKLWN  577 (577)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.1e-65  Score=617.60  Aligned_cols=577  Identities=14%  Similarity=0.129  Sum_probs=448.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +.+.+.+++|+|||++ |++++ +++|+|||+.+++...                   .+.+|...|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence            5678899999999995 77776 5799999998877655                   4789999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC----CcEEEEECCCCceeEEeeccccCe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d----~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      +|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+|||+  .|++++.+    +.|++||  .+..+..+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            9999999999999765533 2236789999999999999999  57777654    3566665  677788899999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|+++.. ..|++++.|++|++||....+....+..|...|.+++|+|+|+                     +|+++
T Consensus       151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~  208 (611)
T 1nr0_A          151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST  208 (611)
T ss_dssp             EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred             eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence            9999976532 3699999999999999887666666777777777666666664                     79999


Q ss_pred             eCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccccc
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  673 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  673 (1120)
                      +.|++|++||+.+++.+..+...     .|...|.+++|+|+|++|++++.|++|++||+.++ +....+..+....   
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~---  284 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE---  284 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence            99999999999999988887421     34558999999999999999999999999999887 3433332211000   


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224          674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  753 (1120)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  753 (1120)
                                                           ........++..+++++.|+.+++|+.....   ....+    
T Consensus       285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~----  320 (611)
T 1nr0_A          285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR----  320 (611)
T ss_dssp             -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred             -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence                                                 0001111256789999999999999976532   11111    


Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      .+|...|.+++|+|+|++|++++.|+.|++||+..                      +.......  .+|...|.+++|+
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s  376 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT  376 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence            45899999999999999999999999999998742                      22222111  2388999999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeee---ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      +++. +++++ |+++++|++.++.....   .........+++|+| ++.+++++ .++.+++|+  .++ +..+. |..
T Consensus       377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~  449 (611)
T 1nr0_A          377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY  449 (611)
T ss_dssp             TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred             CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence            8875 55555 99999999876543211   011234578899999 78777776 467899998  444 45554 888


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  988 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~  988 (1120)
                      .+.+++|+|||++||+|+.|++|++||+.++...   .... .+|.   ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~---~~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS---EVKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE---EEEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee---eeec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            8999999999999999999999999999875321   1122 3344   37999999999999999 4899999999988


Q ss_pred             -ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee--eeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          989 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       989 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~--~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                       +++.......+|...|.+++|+|||++|++|+.|++|+|||+.++...  ..+.       +|....|.  +++|+| |
T Consensus       523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d  592 (611)
T 1nr0_A          523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E  592 (611)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred             CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence             666554233359999999999999999999999999999999887532  2222       44233366  899999 5


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001224         1066 PNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      +. |++++.||+|++|++.
T Consensus       593 ~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          593 TT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TE-EEEEETTSCEEEEECC
T ss_pred             CE-EEEecCCCCEEEEecc
Confidence            66 9999999999999973

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-62  Score=595.59  Aligned_cols=564  Identities=22%  Similarity=0.355  Sum_probs=464.7

Q ss_pred             hhcccCCCCCccccccccccccccccCCCCcC-----CCCcCCCCCCCCCcceee-eccCCCCceEEEEecCCCeEEEEE
Q 001224          310 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTR-TLNQGSSPMSMDFHPVQQTLLLVG  383 (1120)
Q Consensus       310 ~~~r~~~~g~~~~v~~~v~~w~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~spdg~~lla~g  383 (1120)
                      +++|.|+.||++.|      ..+.|++++...     .....+|.   ...+..+ +.+|.+.|++++|+|||+ +||+|
T Consensus         6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd---~~~~~~~~l~gh~~~V~~l~fspdg~-~las~   75 (577)
T 2ymu_A            6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASA   75 (577)
T ss_dssp             CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEEC---TTSCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEE---CCCCEEEEEeCCCCCEEEEEECCCCC-EEEEE
Confidence            45778899999999      888999988632     11233444   2334444 445999999999999999 59999


Q ss_pred             eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeee
Q 001224          384 TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ  463 (1120)
Q Consensus       384 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~  463 (1120)
                      +.|++|+|||. +++.+.                   .+.+|...|.+++|+|||++|++++.|+.+++|+.......  
T Consensus        76 ~~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~--  133 (577)
T 2ymu_A           76 SDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--  133 (577)
T ss_dssp             ETTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE--
T ss_pred             eCCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee--
Confidence            99999999996 455554                   37789999999999999999999999999999998765432  


Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                        ...+|...|.++.|+|++.  .+++++.++.+++|+. ..........|...|.++++.+  ++.+|++++.|+.|++
T Consensus       134 --~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~  206 (577)
T 2ymu_A          134 --TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKL  206 (577)
T ss_dssp             --EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEE
T ss_pred             --eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEE
Confidence              4778999999999999999  6899999999999994 5556677788999999999854  5579999999999999


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      ||.. .+....+..|...+.+++|+|++                     .+|++++.|+.|++||. +++.+..+..+. 
T Consensus       207 w~~~-~~~~~~~~~~~~~v~~~~~s~dg---------------------~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~-  262 (577)
T 2ymu_A          207 WNRN-GQLLQTLTGHSSSVRGVAFSPDG---------------------QTIASASDDKTVKLWNR-NGQLLQTLTGHS-  262 (577)
T ss_dssp             ECTT-SCEEEEEECCSSCEEEEEECTTS---------------------SCEEEEETTSCEEEECT-TSCEEEEECCCS-
T ss_pred             EeCC-CcEEEEEecCCCCEEEEEECCCC---------------------CEEEEEeCCCEEEEEeC-CCCEEEEEecCC-
Confidence            9964 34455566666666666665555                     47999999999999996 567777777654 


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224          624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  703 (1120)
Q Consensus       624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1120)
                       ..|.+++|+|+++.+++++.|+.|++|+...  +....+.+|...+.                                
T Consensus       263 -~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~--------------------------------  307 (577)
T 2ymu_A          263 -SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW--------------------------------  307 (577)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE--------------------------------
T ss_pred             -CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE--------------------------------
Confidence             4799999999999999999999999999643  34445555544322                                


Q ss_pred             ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224          704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  783 (1120)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v  783 (1120)
                               ...+.+++..+++++.|+.+++|++...    ....+    .+|...+.+++|+|+++.+++++.++.+++
T Consensus       308 ---------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          308 ---------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             ---------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ---------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence                     2345678899999999999999997642    22222    347889999999999999999999999999


Q ss_pred             eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224          784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~  862 (1120)
                      |+..                       +..+.. +.  +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.
T Consensus       371 ~~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~  423 (577)
T 2ymu_A          371 WNRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  423 (577)
T ss_dssp             EETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEE
T ss_pred             EcCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEec
Confidence            9852                       111111 22  2888999999999999999998 899999995 567888899


Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  942 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~  942 (1120)
                      +|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||...   
T Consensus       424 ~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---  498 (577)
T 2ymu_A          424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---  498 (577)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---
T ss_pred             CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---
Confidence            9999999999999 8999999999999999996 5778889999999999999999999999999999999999643   


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224          943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                         .++....+|..   .|++++|+|||++|++ +.|+.|++||. +++++..+.  +|.+.|++++|+|||++|++++.
T Consensus       499 ---~~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~  569 (577)
T 2ymu_A          499 ---QLLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASS  569 (577)
T ss_dssp             ---CEEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEET
T ss_pred             ---CEEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeC
Confidence               24455566654   8999999999999999 58899999996 577777766  89999999999999999999999


Q ss_pred             CCcEEEEE
Q 001224         1022 DATVCVFS 1029 (1120)
Q Consensus      1022 Dg~v~iwd 1029 (1120)
                      |++|++||
T Consensus       570 D~~i~~Wd  577 (577)
T 2ymu_A          570 DKTVKLWN  577 (577)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-61  Score=586.61  Aligned_cols=541  Identities=14%  Similarity=0.184  Sum_probs=426.6

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ....+|.+.|++++|||||+ +||+|+.||+|+|||+.+++.....                 .+.+|.++|.+++|+||
T Consensus        53 ~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~d  114 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSE  114 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTT
T ss_pred             eEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCC
Confidence            34456999999999999999 5999999999999999765533211                 36689999999999999


Q ss_pred             CCeEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224          438 GSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       438 g~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      |++||+++.+    +.|++||  +++...   .+.+|.+.|++++|+|++.. .|++|+.|++|++||..+++++.++.+
T Consensus       115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~  188 (611)
T 1nr0_A          115 SKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGE  188 (611)
T ss_dssp             SCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             CCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeecc
Confidence            9999998875    3677776  444443   68899999999999999874 599999999999999999999999999


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee-------CCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      |...|.+++|++  ++.+|++++.|++|++||+.+++....+.       .|...|                     ..+
T Consensus       189 H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V---------------------~~v  245 (611)
T 1nr0_A          189 HTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV---------------------FGL  245 (611)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE---------------------EEE
T ss_pred             ccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE---------------------EEE
Confidence            999999999965  56899999999999999998876655542       344444                     445


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224          587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                      +|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.|  ++..+++++.|+.+++|+...+ .....+.+
T Consensus       246 ~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~g  322 (611)
T 1nr0_A          246 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYG  322 (611)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECC
T ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcC
Confidence            5555556899999999999999999999888864321 112334555  7889999999999999998876 45555556


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224          666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  745 (1120)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  745 (1120)
                      |...+.                                         .+.++++++++++++.|++|++||+.+..... 
T Consensus       323 h~~~v~-----------------------------------------~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~-  360 (611)
T 1nr0_A          323 HNKAIT-----------------------------------------ALSSSADGKTLFSADAEGHINSWDISTGISNR-  360 (611)
T ss_dssp             CSSCEE-----------------------------------------EEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             CCCCEE-----------------------------------------EEEEeCCCCEEEEEeCCCcEEEEECCCCceee-
Confidence            654332                                         24466789999999999999999998643211 


Q ss_pred             ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224          746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  825 (1120)
Q Consensus       746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  825 (1120)
                           ....+|...|.+++|++++ .+++++.|+.+++|+.........                 .....     ....
T Consensus       361 -----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~-----~~~~  412 (611)
T 1nr0_A          361 -----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVAN-----KLSS  412 (611)
T ss_dssp             -----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEE-----ECSS
T ss_pred             -----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeee-----ecCC
Confidence                 1123588999999999876 588999999999998743221100                 00000     0233


Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee--eEe
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSK  903 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~--~~~  903 (1120)
                      ...+++++|+|+.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++||+|+.|+.|++||+.+++.  +..
T Consensus       413 ~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~  487 (611)
T 1nr0_A          413 QPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT  487 (611)
T ss_dssp             CEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec
Confidence            46789999999999888899999999  334 45554 778899999999 999999999999999999987653  234


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC-cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL  981 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v  981 (1120)
                       .+|...|++++|+|||++|++++.|++|++|++.+ ++....   ....+|.   ..|.+++|+|||++||+ +.|+.|
T Consensus       488 -~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          488 -IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             -EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCE
T ss_pred             -cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcE
Confidence             67999999999999999999999999999999987 332111   0122354   48999999999999999 589999


Q ss_pred             EEEEcCCceeeeccccCCC-CCCeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          982 AIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       982 ~i~d~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      ++||+.++.........+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       561 ~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          561 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             EEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            9999988753221123478 89999999999999 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-60  Score=634.23  Aligned_cols=597  Identities=15%  Similarity=0.164  Sum_probs=492.0

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      ...+|.+.|++++|||||+ ++++|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+|+|
T Consensus       610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~  669 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD  669 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence            4456999999999999999 499999999999999999987763                   67899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      ++||+|+.|+.|+|||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v  746 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV  746 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence            999999999999999999998665   67899999999999997655589999999999999999999999999999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-------------CCCceeEEEEcCCCCeEEec--------
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-------------PGRWCTTMAYSADGTRTYQG--------  577 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~~~~~--------  577 (1120)
                      .+++|++  ++.++++++.||.|++||+.+......+..             ....+.+++|+|+|..++.+        
T Consensus       747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            9999865  457999999999999999988765544432             12367888999999855443        


Q ss_pred             -------------ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224          578 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  644 (1120)
Q Consensus       578 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  644 (1120)
                                   .+...+..++|+|++..+++++.||.|++||+.++..+..+..|.  ..|.+++|+|+|+++++++.
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeC
Confidence                         334577889999999999999999999999999999998887664  47999999999999999999


Q ss_pred             CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee
Q 001224          645 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  724 (1120)
Q Consensus       645 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  724 (1120)
                      ||.|++|++.+.... .......                                           .....+.+....++
T Consensus       903 dg~v~vw~~~~~~~~-~~~~~~~-------------------------------------------~~~~~~~~~~~~~~  938 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKN-SAIVLKQ-------------------------------------------EIDVVFQENETMVL  938 (1249)
T ss_dssp             TSCEEEEEHHHHHSC-CSSSEEE-------------------------------------------EEEEEEETTEEEEE
T ss_pred             CCeEEEEEcccccee-eeecccc-------------------------------------------eeeEEEcCCCcEEE
Confidence            999999998654111 1100000                                           00111223344555


Q ss_pred             eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCce
Q 001224          725 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  804 (1120)
Q Consensus       725 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  804 (1120)
                      .....+.+.++......    ..      ..+...+.+++|+|+++.+++++.+|.|++|++..                
T Consensus       939 ~~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~----------------  992 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN----------------  992 (1249)
T ss_dssp             EEESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----------------
T ss_pred             EecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC----------------
Confidence            55666666666654321    11      11456799999999999999999999999998732                


Q ss_pred             eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 001224          805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  883 (1120)
Q Consensus       805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las  883 (1120)
                            +..... +.  +|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++
T Consensus       993 ------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A          993 ------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp             ------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred             ------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence                  222211 22  3889999999999999999998 9999999999987764 557899999999999 66 5678


Q ss_pred             EeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcE
Q 001224          884 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  963 (1120)
Q Consensus       884 g~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~  963 (1120)
                      ++.||.|++||+.+++....+.+|.+.|++++|+||+++|++++.|++|++||+.+++.     .....+|.   ..|.+
T Consensus      1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A         1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp             EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred             EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence            89999999999999999999999999999999999999999999999999999988653     34455555   37999


Q ss_pred             EEEccCCcEEEEE-eCCeEEEEEcCCceeeeccc-------cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224          964 VQFHQDQIHFLVV-HETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus       964 ~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      ++|+|+|++|+++ .|+.|++||+.+++.+..+.       ..+|.+.|++++|+|||++|++++  |.|++||+.+++.
T Consensus      1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence            9999999999995 78999999999998877651       136889999999999999999885  9999999999998


Q ss_pred             eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      +..+.       +| ...+.  +++|+| |+.+|++++.||.|++|++.+
T Consensus      1211 ~~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1211 SQTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             CCCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred             eeeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence            86654       22 22254  789999 689999999999999999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.6e-58  Score=561.78  Aligned_cols=563  Identities=12%  Similarity=0.147  Sum_probs=455.7

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC----ceeEeeceeeeccCCCCcccccccccCCCCc-eEEEEEcC
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP  436 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~sp  436 (1120)
                      .|.+.|++++|||||++ |++|+ ++.|+|||+.++    +...                   .+.+|... |.+++|+|
T Consensus        16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence            37899999999999995 77776 799999999987    5554                   37889999 99999999


Q ss_pred             --CCCeEEEEECCCeEEEEEccCCc-----eeeeeeeecccccCeEEEEEcCCCCceEEEEecCC----CcEEEEECCCC
Q 001224          437 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG  505 (1120)
Q Consensus       437 --dg~~las~~~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d----~~i~vwd~~~~  505 (1120)
                        ++++||+|+.||.|+|||+.+++     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  .+
T Consensus        75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~  150 (615)
T 1pgu_A           75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG  150 (615)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred             CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence              99999999999999999998651     1223346788999999999999999  68888877    6777887  77


Q ss_pred             ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCC---ceeEEEEcCCCCeEEecccccc
Q 001224          506 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       506 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                      +.+..+.+|...|.+++|+++.. ..+++++.|+.|++||+.+.+....+..|..   .+.+++|+|++           
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------  218 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-----------  218 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------
T ss_pred             CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC-----------
Confidence            88999999999999999976542 3899999999999999988777666666665   56665555550           


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC--CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                               +++|++++.||.|++||+.+++.+..+...  .+...|.+++|+ ++.+|++++.|+.|++||+.++ +..
T Consensus       219 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~  287 (615)
T 1pgu_A          219 ---------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCV  287 (615)
T ss_dssp             ---------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEE
T ss_pred             ---------CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEE
Confidence                     458999999999999999999998888311  234479999999 9999999999999999999887 444


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+..+......                                      .......+++..+++++.++.+++||+...
T Consensus       288 ~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  329 (615)
T 1pgu_A          288 QKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGHD  329 (615)
T ss_dssp             EEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred             EEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence            444333111000                                      000111236789999999999999998762


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                      ..   ...+    .+|...|.+++| |+   +++++.||.|++|++.                         .+    . 
T Consensus       330 ~~---~~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~----~-  368 (615)
T 1pgu_A          330 EV---LKTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM----H-  368 (615)
T ss_dssp             EE---EEEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE----E-
T ss_pred             cE---EEEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh----c-
Confidence            21   1122    358899999999 88   9999999999999862                         01    1 


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      ..|...|.+++| +++..+++++ |+.|++||+.+++...       .+.+++|+| ++.+++++ .++.+++|++.+++
T Consensus       369 ~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~  438 (615)
T 1pgu_A          369 QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGD  438 (615)
T ss_dssp             CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCC
T ss_pred             CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCc
Confidence            238899999999 6677777877 9999999987655432       688999999 88888877 78999999998898


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  977 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~  977 (1120)
                      .+..+. |...+++++|+  +++|++++. |+.|++||+.+++...    ....+|.   ..|.+++|+|+|++|+++ .
T Consensus       439 ~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          439 IIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             EEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEET
T ss_pred             eeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCC
Confidence            888877 88999999999  889999999 9999999999854311    3444444   489999999999999995 8


Q ss_pred             CCeEEEEEcCCceeeeccccCC-CCCCeeEEEECC----------CCcEEEEEEcCCcEEEEEcCCc-ceeeeeCCCccc
Q 001224          978 ETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAYL 1045 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~~~ 1045 (1120)
                      |+.|++||+.+++++..+.  + |...|++++|+|          ++++|++++.||.|++||+.++ +.+..+.     
T Consensus       509 dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----  581 (615)
T 1pgu_A          509 MGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-----  581 (615)
T ss_dssp             TSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-----
T ss_pred             CCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-----
Confidence            8999999999999988765  4 899999999999          9999999999999999999998 6666655     


Q ss_pred             CCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1046 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                        +|.. .|.  +++|+| |+. |++++.||.|++|++..
T Consensus       582 --~h~~-~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 --AHKD-GVN--NLLWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             --SSTT-CEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             --cCcc-ceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence              3323 355  899999 577 99999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-56  Score=595.38  Aligned_cols=568  Identities=17%  Similarity=0.215  Sum_probs=466.2

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  ++++++.|+.|++|
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence            477999999999999999999999999999999999998665   6889999999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |+.+++++..+.+|...|.+++|++..++.++++|+.|+.|++||+.+......+..|...|.+++|+|++         
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---------  755 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---------  755 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence            99999999999999999999999887777899999999999999999988777777777777777666666         


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-----------CCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK  649 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~  649 (1120)
                                  +++++++.||.|++||+.+++....+....           ....+.+++|+|+|+.+++++ ++.+.
T Consensus       756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~  822 (1249)
T 3sfz_A          756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL  822 (1249)
T ss_dssp             ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred             ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence                        479999999999999999988777765321           123588999999999999987 68999


Q ss_pred             EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224          650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  729 (1120)
Q Consensus       650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  729 (1120)
                      +||+.++........+|...+                                         ....+.+++..+++++.+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred             EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence            999988733322222332221                                         134566788999999999


Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCc-------------
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK-------------  796 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~-------------  796 (1120)
                      +.+++|++......   ..+    .+|...|.+++|+|+|+.+++++.||.+++|++..........             
T Consensus       862 g~v~vwd~~~~~~~---~~~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          862 YCVELWNIDSRLKV---ADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             SCEEEEETTTTEEE---EEE----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             CeEEEEEcCCCcee---eec----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            99999999863221   111    3588999999999999999999999999999986432111000             


Q ss_pred             -ccc----ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEE
Q 001224          797 -ATA----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF  870 (1120)
Q Consensus       797 -~~~----~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~  870 (1120)
                       ...    ...+.++...++.....      +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred             cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence             000    01223344444443322      466799999999999999999 899999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeec
Q 001224          871 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  950 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~  950 (1120)
                      ++|+| ++++|++|+.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++.     ...
T Consensus      1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A         1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp             EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred             EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence            99999 8999999999999999999998865 466899999999999975 678899999999999998654     233


Q ss_pred             cCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          951 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       951 ~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      ..+|.   ..|.+++|+|+|++++++ .|+.|++||+.+++++..+.  +|...|++++|+|||++|++|+.||.|++||
T Consensus      1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            34444   378999999999999995 89999999999999887765  8899999999999999999999999999999


Q ss_pred             cCCcceeeeeCCCcccC--CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224         1030 AANLKLRCRINPSAYLP--AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus      1030 ~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
                      +.+++.+..+.+.....  .+| ...|.  +++|+| |+.+|++++  |.|++||+.+++.
T Consensus      1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            99999887653222111  122 23355  899999 689999886  9999999999884

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-55  Score=554.49  Aligned_cols=628  Identities=10%  Similarity=0.089  Sum_probs=435.2

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++...                    ...|...|.+++|+| 
T Consensus        11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-   68 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-   68 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred             ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence            34567999999999999999 59999999999999998776543                    234788999999999 


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee---------
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------  508 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~---------  508 (1120)
                      |++|++++.|++|+|||+.+++.+.   .+. |.+.|++++|+|+++  ++++|+.||.|++||+.++++.         
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence            8899999999999999999988665   343 678999999999999  7999999999999999988764         


Q ss_pred             --EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC--eEEeccccccee
Q 001224          509 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG  584 (1120)
Q Consensus       509 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~~~i~  584 (1120)
                        ..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+...     ..+.+.  .....++...+.
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-----FAPGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-----TCCCSTTCCCTTSCBCCCEE
T ss_pred             cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCC-----cCCCcccccccccccCCCeE
Confidence              234679999999999874 33689999999999 9999987666555443100     000000  000111234678


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe-----cCC-----------CCCCcCeEEEc----CCC-CEEEEEE
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVST  643 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~~  643 (1120)
                      +++|+|++.+|++++.||.|++||+.+++++....     .+.           +...|.+++|+    |++ .++++|+
T Consensus       216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~  295 (902)
T 2oaj_A          216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK  295 (902)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence            88888888899999999999999999998776422     121           23368999995    443 5677776


Q ss_pred             CC-----CcEEEEEccCcchh-------h-hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCC-
Q 001224          644 ND-----NGIKILATSDGIRL-------L-RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG-  709 (1120)
Q Consensus       644 ~d-----g~i~iwd~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  709 (1120)
                      .+     +.+.+|++......       . ..+...... ...      .+.                 .......... 
T Consensus       296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~------~~~-----------------~~~~v~~~~~~  351 (902)
T 2oaj_A          296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQM-KIF------PLP-----------------TNVPIVNILPI  351 (902)
T ss_dssp             CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEE-EEE------CCS-----------------SSSCEEEEEEC
T ss_pred             CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccce-EEE------ecC-----------------CCCceEEEEEC
Confidence            65     37888885311000       0 000000000 000      000                 0000000000 


Q ss_pred             --CCCcccccCCCcceeeccCCCcceeeecccCCCCccc----eee------------------------------ccCC
Q 001224          710 --MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC----RSL------------------------------RLPE  753 (1120)
Q Consensus       710 --~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~------------------------------~~~~  753 (1120)
                        .........+...+++++.|+.+++|++.........    ..+                              ..+-
T Consensus       352 ~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l  431 (902)
T 2oaj_A          352 PRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL  431 (902)
T ss_dssp             CSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSC
T ss_pred             CCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcc
Confidence              0000011124457788888999999998543211000    000                              0011


Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      .+|...+..++|+|+++.+++++.|++|++||+........         .++...    ... ....+|...|.+++|+
T Consensus       432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~~V~svafs  497 (902)
T 2oaj_A          432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKELAVDKISFA  497 (902)
T ss_dssp             CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSCCEEEEEEE
T ss_pred             cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCCceeEEEec
Confidence            23445555667789999999999999999999855421000         000000    000 0011488999999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCc---------------------------------------------eeeeecCCCCC
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPPA  867 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~  867 (1120)
                      ||+++||+|+ ||+|+|||+.+++                                             ++.++.+|.+.
T Consensus       498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~  577 (902)
T 2oaj_A          498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK  577 (902)
T ss_dssp             TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred             CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence            9999999999 9999999997652                                             36778889999


Q ss_pred             eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-----eec-ccccceEEEEEc-----cCC---CEEEEEeCCCCEE
Q 001224          868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLC  933 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg~v~  933 (1120)
                      |++|+||| || +||+|+.|++|+|||+.+...+.     .+. +|.+.|++|+|+     |||   ++|++|+.|++|+
T Consensus       578 V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~  655 (902)
T 2oaj_A          578 TSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI  655 (902)
T ss_dssp             EEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred             EEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence            99999999 88 99999999999999998876653     343 899999999999     886   8999999999999


Q ss_pred             EEEC---CCcccccceeeeccCCCCCC--CCCCcEEE-Ec----------------------cCCcEEEEEeCCeEEEEE
Q 001224          934 VWSS---DGWEKQKNRFLQIPTGRTPT--AQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFE  985 (1120)
Q Consensus       934 iWd~---~~~~~~~~~~~~~~~~~~~~--~~~i~~~~-fs----------------------pdg~~la~~~d~~v~i~d  985 (1120)
                      +||+   .+|+.     ...+.+|...  ...|..++ |+                      ++|..|+++ +..++||+
T Consensus       656 ~wd~~p~~~g~~-----~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~  729 (902)
T 2oaj_A          656 TYKILPASGGKF-----DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLIT  729 (902)
T ss_dssp             EEEEEECGGGCE-----EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEEC
T ss_pred             EEEEecCCCCcE-----EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEe
Confidence            9999   55543     2222222100  13556665 55                      456555555 88999999


Q ss_pred             cCCceeeeccccCCCCCCeeEE---E------ECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          986 TTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l---~------~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                      +.++++.+...  .|...+.++   .      |++++..|++++.||+|++|++.+++.+..+........    .  ..
T Consensus       730 ~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~--~~  801 (902)
T 2oaj_A          730 LGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----K--YI  801 (902)
T ss_dssp             TTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----H--HH
T ss_pred             CccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----c--cc
Confidence            99999987764  455666666   5      788999999999999999999999999988773221110    0  11


Q ss_pred             eEEEecCCCCCEEEEEeCC
Q 001224         1057 LVIAAHPQEPNEFALGLSD 1075 (1120)
Q Consensus      1057 ~~i~~~p~d~~~l~s~~~D 1075 (1120)
                      ....|.+ .|+.++-.+..
T Consensus       802 ~~~~~~~-~G~~~~~~~~~  819 (902)
T 2oaj_A          802 TESSVLR-NGDIAIRVSEF  819 (902)
T ss_dssp             TTCEECT-TSCEEEECSSS
T ss_pred             cceEEcC-CCCEEEEeChh
Confidence            1456776 47776655533

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.1e-55  Score=535.50  Aligned_cols=524  Identities=13%  Similarity=0.159  Sum_probs=437.4

Q ss_pred             cceeeeccCCCC-ceEEEEec--CCCeEEEEEeCCCcEEEEecCCC------ceeEeeceeeeccCCCCcccccccccCC
Q 001224          355 KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDP  425 (1120)
Q Consensus       355 ~~~~~~~~h~~~-v~~v~~sp--dg~~lla~g~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~h  425 (1120)
                      .....+.+|... |++++|+|  +++ +|++|+.||+|+|||+.++      +....                 ..+.+|
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~  115 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVL  115 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECC
T ss_pred             ccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCccccccccccc-----------------chhhcc
Confidence            344555669999 99999999  999 5999999999999999765      21111                 136679


Q ss_pred             CCceEEEEEcCCCCeEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      ...|.+++|+|+|++|++++.+    +.|.+||  .++.+.   .+.+|...|.+++|+|+++. ++++++.|+.|++||
T Consensus       116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd  189 (615)
T 1pgu_A          116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQ  189 (615)
T ss_dssp             SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEE
T ss_pred             cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEe
Confidence            9999999999999999999988    6888888  444443   68899999999999999975 699999999999999


Q ss_pred             CCCCceeEEeecccc---CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-e---CCCCceeEEEEcCCCCeE
Q 001224          502 ATNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~~  574 (1120)
                      +.+++.+..+.+|..   .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ .   .|...+.+++|+ ++   
T Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---  264 (615)
T 1pgu_A          190 GPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS---  264 (615)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS---
T ss_pred             CCCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC---
Confidence            999999999999999   9999999654 1579999999999999999987776666 4   566666666655 44   


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                                        .+|++++.||.|++||+.+++.+..+..+..  ...+.++.|+ ++.++++++.||.|++||
T Consensus       265 ------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          265 ------------------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             ------------------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             ------------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence                              5899999999999999999999988876521  1346677775 899999999999999999


Q ss_pred             ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224          653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  732 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  732 (1120)
                      +.++ +....+.+|...+.                                         ...+ ++   +++++.|+.+
T Consensus       326 ~~~~-~~~~~~~~~~~~v~-----------------------------------------~~~~-~~---l~~~~~dg~i  359 (615)
T 1pgu_A          326 LGHD-EVLKTISGHNKGIT-----------------------------------------ALTV-NP---LISGSYDGRI  359 (615)
T ss_dssp             TTEE-EEEEEECCCSSCEE-----------------------------------------EEET-TT---TEEEETTSCE
T ss_pred             CCCC-cEEEEEeCCCCCEE-----------------------------------------EEEe-cC---cEEECCCCeE
Confidence            9876 55566665554332                                         1223 33   8999999999


Q ss_pred             eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                      ++|++.         .+.   ..|...|.+++| +++..+++++.|+.+++|++.....                     
T Consensus       360 ~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~---------------------  405 (615)
T 1pgu_A          360 MEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF---------------------  405 (615)
T ss_dssp             EETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------------
T ss_pred             EEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------------
Confidence            999987         111   348899999999 6677899999999999998743221                     


Q ss_pred             cccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CCcEE
Q 001224          813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQ  891 (1120)
Q Consensus       813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~  891 (1120)
                                 ...+.+++++|++.+++++.++.+++|++.+++.+..+. +...+.+++|+   +++|++|+. ||.|+
T Consensus       406 -----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          406 -----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             -----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEE
T ss_pred             -----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEE
Confidence                       125778999999999998889999999999999888887 78899999998   679999999 99999


Q ss_pred             EEEeecceee-EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEcc-
Q 001224          892 IYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ-  968 (1120)
Q Consensus       892 vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fsp-  968 (1120)
                      +||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++.     +....+ |.   ..|++++|+| 
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~  542 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPA  542 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCC
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCc
Confidence            9999988766 77889999999999999999999999999999999998653     344444 54   4899999999 


Q ss_pred             ---------CCcEEEEE-eCCeEEEEEcCCc-eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          969 ---------DQIHFLVV-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       969 ---------dg~~la~~-~d~~v~i~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                               ++++|+++ .|+.|++||+.++ +++..+.  +|...|++++|+||++ |++++.||.|++|++.+
T Consensus       543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             cccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                     99999995 7899999999998 6666654  8899999999999999 99999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-53  Score=537.00  Aligned_cols=593  Identities=11%  Similarity=0.090  Sum_probs=418.0

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      ..+|.+.|++++|+|+|++||+|+.||+|+||+..+.+...   . ..|...|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            45799999999999999999999999999999998866443   2 35788999999999 77  799999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-----------eeeeCCCCceeEEEEcCC
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~  570 (1120)
                      +.+++++..+. |.+.|++++|++  ++.+|++|+.||.|++||+++....           ..+..|...         
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~---------  153 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP---------  153 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC---------
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC---------
Confidence            99999999887 778999999864  5579999999999999999875432           111233344         


Q ss_pred             CCeEEecccccceeEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeEEEecC----------------CCCCCcCeEEEc
Q 001224          571 GTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFN  633 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s  633 (1120)
                                  +.+++|+|+ +..+++|+.||.| +||+++++.+..+..+                .+...|.+++|+
T Consensus       154 ------------V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          154 ------------IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             ------------CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             ------------eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence                        444555553 2578999999999 9999999998888755                112469999999


Q ss_pred             CCCCEEEEEECCCcEEEEEccCcchhhh--hcc---cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001224          634 KDGCLLAVSTNDNGIKILATSDGIRLLR--TFE---NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  708 (1120)
Q Consensus       634 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1120)
                      |+|++|++++.||.|++||+.++ +.+.  .+.   .|... ...+..   .+..                 ..+   ..
T Consensus       221 pdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~~-----------------~~~---V~  275 (902)
T 2oaj_A          221 PNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SSTN-----------------AAK---IS  275 (902)
T ss_dssp             TTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSSC-----------------CCE---EE
T ss_pred             CCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Cccc-----------------cCC---ee
Confidence            99999999999999999999887 3322  121   11100 000000   0000                 000   00


Q ss_pred             CCCCcccccCCC-cceeeccCC-----CcceeeecccCCC---------------CccceeeccCCccccccEEEEEEcC
Q 001224          709 GMNGDVRSLADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRLIFTN  767 (1120)
Q Consensus       709 ~~~~~~~~~~~~-~~l~~~~~d-----~~i~vw~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~s~  767 (1120)
                      .+.......+++ ..+++++.+     ..+.+|++.....               ....+.+..   .+...|..+.+.+
T Consensus       276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~  352 (902)
T 2oaj_A          276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL---PTNVPIVNILPIP  352 (902)
T ss_dssp             EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC---SSSSCEEEEEECC
T ss_pred             EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec---CCCCceEEEEECC
Confidence            000001112343 456666554     3678888542100               001111111   2456788888765


Q ss_pred             ----------CCceEEEeccCceEEEeeecccccCCCC----cc------------ccccCceeecCC---CCCcccccC
Q 001224          768 ----------SGNAILALASNAIHLLWKWQRTERNSSG----KA------------TASVAPQLWQPP---SGIMMTNDV  818 (1120)
Q Consensus       768 ----------~g~~l~~~~~dg~i~vw~~~~~~~~~~~----~~------------~~~~~~~~w~~~---~g~~~~~~~  818 (1120)
                                +...+++++.||.+++|++..+......    ..            .......+|+..   .+.. ...+
T Consensus       353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l  431 (902)
T 2oaj_A          353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DYLL  431 (902)
T ss_dssp             SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSC
T ss_pred             CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcc
Confidence                      3346888889999999998543211000    00            000011233311   0111 1123


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCcee--eee---------cCCCCCeEEEEEecCCCcEEEEEeC
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MPPPPAATFLAFHPQDNNIIAIGMD  886 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~--~~~---------~~~~~~i~~l~~sp~d~~~lasg~~  886 (1120)
                      .  +|...+.+++|+|+++++++|+ |++|++||+.++...  ..+         .+|...|.+++|+| |+++||+|+.
T Consensus       432 ~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~  508 (902)
T 2oaj_A          432 K--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIE  508 (902)
T ss_dssp             C--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEET
T ss_pred             c--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEec
Confidence            3  3777888899999999999999 999999999887432  111         17888999999999 9999999999


Q ss_pred             CCcEEEEEeecc---------------------------------------------eeeEeecccccceEEEEEccCCC
Q 001224          887 DSSIQIYNVRVD---------------------------------------------EVKSKLKGHSKRITGLAFSHALN  921 (1120)
Q Consensus       887 dg~v~vwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~d~~  921 (1120)
                      ||+|+||++.++                                             +++..+.+|.+.|++|+||||| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence            999999999876                                             2467888999999999999999 


Q ss_pred             EEEEEeCCCCEEEEECCCcccccceeeeccC-CCCCCCCCCcEEEEc-----cCC---cEEEE-EeCCeEEEEEc---CC
Q 001224          922 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLV-VHETQLAIFET---TK  988 (1120)
Q Consensus       922 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~fs-----pdg---~~la~-~~d~~v~i~d~---~~  988 (1120)
                      +||+|+.|++|+|||+++........+..+. +|.   ..|++++|+     |||   ++|++ +.|+.|++||+   .+
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~  664 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG  664 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence            9999999999999999875432111122333 565   489999999     886   88888 58999999999   88


Q ss_pred             ceeeeccccC---CCCCCeeEEE-EC----------------------CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCC
Q 001224          989 LECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus       989 ~~~~~~~~~~---~h~~~v~~l~-~s----------------------~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 1042 (1120)
                      |++...+...   .|.++|.+++ |+                      +++.+|+++  +..|+||++.+++..++..  
T Consensus       665 g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~--  740 (902)
T 2oaj_A          665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF--  740 (902)
T ss_dssp             GCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC--
T ss_pred             CcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc--
Confidence            8887776521   1357888887 66                      556555554  7899999999999887653  


Q ss_pred             cccCCCCCCCCccceEE---E------ecCCCCCEEEEEeCCCcEEEEecCCCC--CCCCCCCC
Q 001224         1043 AYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPPP 1095 (1120)
Q Consensus      1043 ~~~~~g~~~~~v~~~~i---~------~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~p 1095 (1120)
                           +|. ..+.  ++   .      |++ ++..|++++.||+|++|++.+.+  .....+++
T Consensus       741 -----~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~  795 (902)
T 2oaj_A          741 -----KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP  795 (902)
T ss_dssp             -----SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred             -----ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence                 111 1122  33   5      667 57899999999999999999998  44444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-45  Score=466.62  Aligned_cols=465  Identities=17%  Similarity=0.227  Sum_probs=371.9

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +.+|.+.|++++|||+|+ +|++|+.||.|+|||+.+++.+..                   +.+|.+.|.+++|+|+|+
T Consensus         9 ~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~   68 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN   68 (814)
T ss_dssp             EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred             eecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCCC
Confidence            445999999999999999 499999999999999999887763                   678999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  518 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v  518 (1120)
                      +||+|+.||.|++||+.+++.+.   .+.+|.+.|++++|+|+++  ++++++.||.|++||+.++ .....+.+|...|
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  143 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence            99999999999999999988665   6788999999999999999  7999999999999999987 7778889999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC--CCCEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFL  596 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~--~~~~l~  596 (1120)
                      .+++|++. ++..+++++.||.|++||+........+..+.                    ...+..++|+|  ++.+++
T Consensus       144 ~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             EEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEE
T ss_pred             EEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEE
Confidence            99999752 45799999999999999998766655544332                    12444455555  567899


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  676 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  676 (1120)
                      +++.||.|++||+.+++.+..+..+.  ..|.+++|+|++.++++++.||.|++||+.++ .....+             
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~-------------  266 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL-------------  266 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE-------------
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-------------
Confidence            99999999999999999999888664  47999999999999999999999999998765 211111             


Q ss_pred             CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224          677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  756 (1120)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  756 (1120)
                                                                                                   ..+
T Consensus       267 -----------------------------------------------------------------------------~~~  269 (814)
T 3mkq_A          267 -----------------------------------------------------------------------------NVG  269 (814)
T ss_dssp             -----------------------------------------------------------------------------CCS
T ss_pred             -----------------------------------------------------------------------------ecC
Confidence                                                                                         114


Q ss_pred             cccEEEEEEcCCCce-EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          757 ATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ...+.+++|+|++.. +++++.++.+.+|++.                                     .....+.++|+
T Consensus       270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~  312 (814)
T 3mkq_A          270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPV  312 (814)
T ss_dssp             SSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSS
T ss_pred             CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCC
Confidence            567889999999875 3666667777887651                                     22345778899


Q ss_pred             CCEEEEEe-CC---cEEE------EEcCCCcee----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          836 DSYVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       836 ~~~l~~~s-dg---~i~v------wd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      |+.+++++ +.   .+..      |++..+...    ..+..+...+.+++|+| ++++|++++ ||.+.+|++..... 
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~-  389 (814)
T 3mkq_A          313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN-  389 (814)
T ss_dssp             SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred             CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc-
Confidence            99888876 32   1222      333333322    33455667899999999 999999988 89999999765432 


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---cEEEE-Ee
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VH  977 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---~~la~-~~  977 (1120)
                          .+.+.|.+++|+||+++|++++.|+.|++|+.-.             ++.   ..+..++|+|+|   .+|++ +.
T Consensus       390 ----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~  449 (814)
T 3mkq_A          390 ----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKS  449 (814)
T ss_dssp             ----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEE
T ss_pred             ----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEec
Confidence                2456788999999999999999999999996332             122   257888999998   35555 79


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE------EcCCcEEEE
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1028 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------~~Dg~v~iw 1028 (1120)
                      |+.|++||+.+++.+..+.  .|..   .++|+|||++|+++      +.++.+.+|
T Consensus       450 d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~  501 (814)
T 3mkq_A          450 DGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL  501 (814)
T ss_dssp             TTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred             CCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence            9999999999999888775  3332   99999999999999      555554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9e-44  Score=450.86  Aligned_cols=467  Identities=16%  Similarity=0.209  Sum_probs=373.7

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++++.||.|++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence            477899999999999999999999999999999999988665   6779999999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      |+.+++.+..+.+|.+.|.+++|++  ++.+|++++.||.|++||+.+. .....+..|...+.+++|+|+         
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---------  151 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---------  151 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence            9999999999999999999999965  4579999999999999999876 344455566666666666651         


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCcc
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                                 +++.+++++.||.|++||+.++.....+..+. ...+.+++|+|  ++.++++++.||.|++||+.++ 
T Consensus       152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-  218 (814)
T 3mkq_A          152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-  218 (814)
T ss_dssp             -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred             -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence                       33479999999999999999988888776543 24689999999  9999999999999999998765 


Q ss_pred             hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224          658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  737 (1120)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  737 (1120)
                      .....+                                                                          
T Consensus       219 ~~~~~~--------------------------------------------------------------------------  224 (814)
T 3mkq_A          219 SCVATL--------------------------------------------------------------------------  224 (814)
T ss_dssp             EEEEEE--------------------------------------------------------------------------
T ss_pred             cEEEEE--------------------------------------------------------------------------
Confidence            211111                                                                          


Q ss_pred             ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224          738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  817 (1120)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  817 (1120)
                                      .+|...|.+++|+|++..+++++.||.|++|++..                      +..... 
T Consensus       225 ----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~-  265 (814)
T 3mkq_A          225 ----------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT-  265 (814)
T ss_dssp             ----------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred             ----------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence                            12667899999999999999999999999998732                      222111 


Q ss_pred             CCCCCCCCCccEEEEccCCC--EEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc---EEE
Q 001224          818 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI  892 (1120)
Q Consensus       818 ~~~~~~~~~v~~l~~s~d~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~v  892 (1120)
                      +.  .+...+.+++|+|+++  +++++.++.+.+|++....            ..++++| +++++++++.+..   +..
T Consensus       266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred             ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence            11  2678899999999997  5777779999999976532            3467788 8888888776652   111


Q ss_pred             ------EEeeccee----eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224          893 ------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  962 (1120)
Q Consensus       893 ------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~  962 (1120)
                            |++..+..    ...+..|...+.+++|+|+|++|++++ |+.+.+|++......     .        .+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~--------~~~i~  396 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----A--------FGKCQ  396 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----E--------EEECS
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----C--------CCceE
Confidence                  22222222    234566777899999999999999998 899999998653221     1        13678


Q ss_pred             EEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCCcceeee
Q 001224          963 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus       963 ~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
                      +++|+|+|++++++ .++.|++|+..          .+|...+.+++|+|||   ++|++++.|+.|++||+.+++.+..
T Consensus       397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~  466 (814)
T 3mkq_A          397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR  466 (814)
T ss_dssp             EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence            99999999999996 78999999632          2567889999999999   6889999999999999999999988


Q ss_pred             eCCCcccCCCCCCCCccceEEEecCCCCCEEEEE------eCCCcEEEEe
Q 001224         1039 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1082 (1120)
Q Consensus      1039 ~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~------~~Dg~v~vW~ 1082 (1120)
                      +.       +|    ..  .++|+| |+++|+++      +.++.+.+|.
T Consensus       467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence            77       21    11  689999 68999999      5555555543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-42  Score=400.26  Aligned_cols=306  Identities=16%  Similarity=0.316  Sum_probs=261.1

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++...                   .+.+|.+.|.+++|+|+|+
T Consensus       104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~  163 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK  163 (410)
T ss_dssp             EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred             ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence            345889999999999999 59999999999999999988765                   3788999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      +|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~  238 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  238 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence            99999999999999999987665   6889999999999999999  799999999999999999999999999999999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      +++++  +++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.+|++|+
T Consensus       239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred             EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence            99875  456899999999999999999988888899999999999999986521111100 111122334577999999


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  679 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1120)
                      .|+.|++||+.++.++..+.+|..  .|.+++|+|+|++|++|+.||.|++||+.++ +....+                
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~----------------  376 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL----------------  376 (410)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE----------------
T ss_pred             CCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE----------------
Confidence            999999999999999999987644  7999999999999999999999999998665 222111                


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224          680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  759 (1120)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  759 (1120)
                                                                                                .+|...
T Consensus       377 --------------------------------------------------------------------------~~h~~~  382 (410)
T 1vyh_C          377 --------------------------------------------------------------------------NAHEHF  382 (410)
T ss_dssp             --------------------------------------------------------------------------ECCSSC
T ss_pred             --------------------------------------------------------------------------cCCCCc
Confidence                                                                                      126788


Q ss_pred             EEEEEEcCCCceEEEeccCceEEEeee
Q 001224          760 ISRLIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       760 i~~l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      |.+++|+|++..+++++.||.|++|++
T Consensus       383 v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          383 VTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-39  Score=373.41  Aligned_cols=306  Identities=21%  Similarity=0.346  Sum_probs=261.6

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      +.+|.++|++++|+|++++|++|+.||+|+|||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            67899999999999999999999999999999999988665   6889999999999999999  799999999999999


Q ss_pred             CCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224          502 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  581 (1120)
Q Consensus       502 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~  581 (1120)
                      +.+++++.++.+|...|.+++|+++  +.+|++|+.|++|++||+.++.....+..|...+..+.++++|          
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g----------  246 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG----------  246 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS----------
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC----------
Confidence            9999999999999999999999654  5799999999999999999988777777777766666666655          


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhh
Q 001224          582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  661 (1120)
Q Consensus       582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  661 (1120)
                                 .++++++.|+.|++||+.+++....+..|..  .|.+++|+|++.+.                   ...
T Consensus       247 -----------~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~-------------------~~~  294 (410)
T 1vyh_C          247 -----------TLIASCSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYS-------------------SIS  294 (410)
T ss_dssp             -----------SEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGG-------------------GGG
T ss_pred             -----------CEEEEEcCCCeEEEEECCCCceeeEecCCCc--eEEEEEEcCccccc-------------------chh
Confidence                       4899999999999999999988888876544  68888888764210                   000


Q ss_pred             hcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCC
Q 001224          662 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  741 (1120)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  741 (1120)
                      ..                                                                              
T Consensus       295 ~~------------------------------------------------------------------------------  296 (410)
T 1vyh_C          295 EA------------------------------------------------------------------------------  296 (410)
T ss_dssp             GC------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224          742 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  821 (1120)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~  821 (1120)
                                    .            +.                                                   
T Consensus       297 --------------~------------~~---------------------------------------------------  299 (410)
T 1vyh_C          297 --------------T------------GS---------------------------------------------------  299 (410)
T ss_dssp             --------------C------------SC---------------------------------------------------
T ss_pred             --------------c------------cc---------------------------------------------------
Confidence                          0            00                                                   


Q ss_pred             CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224          822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  900 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  900 (1120)
                            .......++.++++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus       300 ------~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          300 ------ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             ------C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred             ------cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence                  0000112467888888 89999999999999999999999999999999 899999999999999999999999


Q ss_pred             eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      +..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus       373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.8e-39  Score=353.76  Aligned_cols=288  Identities=17%  Similarity=0.306  Sum_probs=239.4

Q ss_pred             ccCCCCceEEEEEcCC----CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          422 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       422 l~~h~~~V~~l~~spd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      +.+|.+.|++++|+|+    +++|++|+.|++|+||++.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            6789999999999984    67999999999999999988753 23446889999999999999999  79999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      ++||+.+++++..+..|...+.+++|++  ++.+                                              
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~----------------------------------------------  136 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQY----------------------------------------------  136 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSE----------------------------------------------
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCE----------------------------------------------
Confidence            9999999998888777666665555532  2334                                              


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                                       |++++.||.|++||+.+++....+..+.  ..+.+++|+|++++|++|+.||.|++||+.++.
T Consensus       137 -----------------l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~  197 (321)
T 3ow8_A          137 -----------------LATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGK  197 (321)
T ss_dssp             -----------------EEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             -----------------EEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                             4455555555555555555555555443  368899999999999999999999999986551


Q ss_pred             hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224          658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  737 (1120)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  737 (1120)
                       .+..                                                                           
T Consensus       198 -~~~~---------------------------------------------------------------------------  201 (321)
T 3ow8_A          198 -LLHT---------------------------------------------------------------------------  201 (321)
T ss_dssp             -EEEE---------------------------------------------------------------------------
T ss_pred             -EEEE---------------------------------------------------------------------------
Confidence             1000                                                                           


Q ss_pred             ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224          738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  817 (1120)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  817 (1120)
                                                                                                      
T Consensus       202 --------------------------------------------------------------------------------  201 (321)
T 3ow8_A          202 --------------------------------------------------------------------------------  201 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      +  .+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus       202 ~--~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          202 L--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             E--CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             E--cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCC
Confidence            0  01677788999999999999998 89999999999999999999999999999999 89999999999999999999


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      +++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus       279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.7e-38  Score=353.07  Aligned_cols=291  Identities=20%  Similarity=0.314  Sum_probs=251.3

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+.+|.+.|++++|+||++ +|++|+.||+|+|||+.+++.+..                   +..|...|.+++|+|+
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~  108 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPS  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTT
T ss_pred             eeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCC
Confidence            34456999999999999999 599999999999999999887763                   5679999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~  516 (1120)
                      |++|++|+.|+.|++|++.++.. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++++..+.+|.+
T Consensus       109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~  185 (340)
T 1got_B          109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence            99999999999999999987642 233446789999999999999876   89999999999999999999999999999


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|.+++|++  ++.++++|+.|+.|++||+++......+..|...|.+++|+|++                     ++|+
T Consensus       186 ~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l~  242 (340)
T 1got_B          186 DVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NAFA  242 (340)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred             ceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---------------------CEEE
Confidence            999999865  55799999999999999999887777777777766666666655                     4899


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCC
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  676 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  676 (1120)
                      +++.||.|++||+++++.+..+..+.....|.+++|+|+|++|++|+.|+.|++||+.++ .....+             
T Consensus       243 s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~-------------  308 (340)
T 1got_B          243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-------------  308 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-------------
T ss_pred             EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-------------
Confidence            999999999999999988888775555557899999999999999999999999998665 111111             


Q ss_pred             CCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccc
Q 001224          677 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  756 (1120)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~  756 (1120)
                                                                                                   .+|
T Consensus       309 -----------------------------------------------------------------------------~~h  311 (340)
T 1got_B          309 -----------------------------------------------------------------------------AGH  311 (340)
T ss_dssp             -----------------------------------------------------------------------------ECC
T ss_pred             -----------------------------------------------------------------------------ecC
Confidence                                                                                         237


Q ss_pred             cccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          757 ATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      ...|.+++|+|+|..|++++.|+.|++|+
T Consensus       312 ~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            78899999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.6e-38  Score=353.90  Aligned_cols=294  Identities=17%  Similarity=0.269  Sum_probs=253.5

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+.+|.+.|++++|+||++ +|++|+.||+|+|||..+++....                   +..|...|.+++|+|+
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~  117 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPS  117 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTT
T ss_pred             EEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCC
Confidence            34556999999999999999 599999999999999998877653                   5568889999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCce---eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  514 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  514 (1120)
                      |++||+|+.|+.+++|++.....   ......+.+|.+.|.+++|+|++.  .|++++.|++|++||+.+++++..+.+|
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h  195 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGH  195 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence            99999999999999999875421   122335778999999999999999  6999999999999999999999999999


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      ...|.++++++++++.+|++|+.||.|++||+++......+..|...|.+++|+|++                     ++
T Consensus       196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~  254 (354)
T 2pbi_B          196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DA  254 (354)
T ss_dssp             SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred             CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CE
Confidence            999999999888778899999999999999999888777777777766666666665                     47


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccC
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  674 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  674 (1120)
                      |++++.|++|++||+++++.+..+..+.....+.+++|+|+|++|++|+.|+.|++||+.++. .+..+           
T Consensus       255 l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l-----------  322 (354)
T 2pbi_B          255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL-----------  322 (354)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE-----------
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE-----------
Confidence            999999999999999999888777655544568899999999999999999999999987661 11111           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224          675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  754 (1120)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  754 (1120)
                                                                                                     .
T Consensus       323 -------------------------------------------------------------------------------~  323 (354)
T 2pbi_B          323 -------------------------------------------------------------------------------F  323 (354)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------E
Confidence                                                                                           2


Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      +|...|.+++|+|+|++|++++.|+.|++|+
T Consensus       324 ~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            3778999999999999999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-38  Score=365.43  Aligned_cols=339  Identities=15%  Similarity=0.204  Sum_probs=273.4

Q ss_pred             cCCCCceEEEEEcCCCC-eEEEEECCCeEEEEEc----cCCce------eeee-eeec------ccccCeEEEEEcCCCC
Q 001224          423 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK  484 (1120)
Q Consensus       423 ~~h~~~V~~l~~spdg~-~las~~~dg~v~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~d~~  484 (1120)
                      ..|.+.|.+++|+|+|+ +||+|+.||.|++|++    .+++.      .... ..+.      +|.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34678999999999999 9999999999999999    88772      2211 1112      2688999999999999


Q ss_pred             ceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCc---
Q 001224          485 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW---  561 (1120)
Q Consensus       485 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---  561 (1120)
                        +|++++.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...   
T Consensus       122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence              799999999999999 78889999999999999999865  5579999999999999999987776666655443   


Q ss_pred             eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224          562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  641 (1120)
Q Consensus       562 v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  641 (1120)
                      +....+.+++.         .+..+.++++ ..+++++.+|.|++||+.+++.+..+..+.  ..|.+++|+|++++|++
T Consensus       197 ~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          197 INAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             ---------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEEE
T ss_pred             eeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEEE
Confidence            11111112211         2455556655 358999999999999999999988887554  47999999999999999


Q ss_pred             EECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCc
Q 001224          642 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  721 (1120)
Q Consensus       642 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (1120)
                      ++.|+.|++||+.++. ....+                                                          
T Consensus       265 ~~~d~~i~i~d~~~~~-~~~~~----------------------------------------------------------  285 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGN-SQNCF----------------------------------------------------------  285 (425)
T ss_dssp             EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred             EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence            9999999999876541 00000                                                          


Q ss_pred             ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224          722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (425)
T 1r5m_A          286 --------------------------------------------------------------------------------  285 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcE
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  880 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~  880 (1120)
                                         ..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus       286 -------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  344 (425)
T 1r5m_A          286 -------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK  344 (425)
T ss_dssp             -------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred             -------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence                               0156678888899988 777777 89999999999999999999999999999999 8999


Q ss_pred             EEEEeCCCcEEEEEeecce--------------------eeEeeccccc--ceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          881 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       881 lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      |++|+.||.|++||+.+++                    .+..+.+|..  .|++++|+|++++|++++.||.|++|+++
T Consensus       345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999988                    8899999977  99999999999999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=344.96  Aligned_cols=288  Identities=15%  Similarity=0.220  Sum_probs=247.5

Q ss_pred             eccCCCCceEEEEecC----CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          360 TLNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spd----g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ..+|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++.....                 .+.+|...|.+++|+
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~   89 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDIS   89 (321)
T ss_dssp             TTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEEC
T ss_pred             cccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEEC
Confidence            3469999999999986    44 6999999999999999876543211                 377999999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      +++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++|+.|+.|++||+.+++....+..|.
T Consensus        90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~  164 (321)
T 3ow8_A           90 HTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRG  164 (321)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence            999999999999999999999998665   5778889999999999999  79999999999999999999999999999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      ..|.+++|++  ++.+|++|+.||.|++||+.+.+....+..|...|.+++|+|++                     ++|
T Consensus       165 ~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~---------------------~~l  221 (321)
T 3ow8_A          165 KFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---------------------QLL  221 (321)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS---------------------CEE
T ss_pred             ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC---------------------CEE
Confidence            9999999864  56899999999999999999877777777776666666666555                     589


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      ++++.||.|++||+.+++....+..|.  ..|.+++|+|++++|++++.|++|++||+.++ .++..+            
T Consensus       222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~------------  286 (321)
T 3ow8_A          222 VTASDDGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTF------------  286 (321)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEE------------
T ss_pred             EEEcCCCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEE------------
Confidence            999999999999999999988887664  47999999999999999999999999998776 222221            


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                    .+
T Consensus       287 ------------------------------------------------------------------------------~~  288 (321)
T 3ow8_A          287 ------------------------------------------------------------------------------FD  288 (321)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------cC
Confidence                                                                                          12


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      |...|.+++|+|+++.|++++.||.|++||.
T Consensus       289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            6678999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-37  Score=345.19  Aligned_cols=286  Identities=15%  Similarity=0.202  Sum_probs=247.0

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw  124 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence            488999999999999999999999999999999999987665   6778999999999999999  79999999999999


Q ss_pred             ECCCC----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          501 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       501 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      |+.++    .....+.+|.+.|.++.|.++.   .+++++.|++|++||+.+......+..|...|.+++|+|++     
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-----  196 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-----  196 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-----
Confidence            99875    3566788999999999986542   58999999999999999887777777777767666666665     


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                      +++++|+.||.|++||+.++..+..+..|..  .|.+++|+|++++|++|+.||+|++||+.++
T Consensus       197 ----------------~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          197 ----------------RLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ----------------SEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ----------------CEEEEEeCCCcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence                            4799999999999999999999998876644  7999999999999999999999999998654


Q ss_pred             chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                      .. ...                                                                          
T Consensus       259 ~~-~~~--------------------------------------------------------------------------  263 (340)
T 1got_B          259 QE-LMT--------------------------------------------------------------------------  263 (340)
T ss_dssp             EE-EEE--------------------------------------------------------------------------
T ss_pred             cE-EEE--------------------------------------------------------------------------
Confidence            10 000                                                                          


Q ss_pred             cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224          737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                                  +..                                                 
T Consensus       264 ----------------------------~~~-------------------------------------------------  266 (340)
T 1got_B          264 ----------------------------YSH-------------------------------------------------  266 (340)
T ss_dssp             ----------------------------ECC-------------------------------------------------
T ss_pred             ----------------------------Ecc-------------------------------------------------
Confidence                                        000                                                 


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                          ..+...|.+++|+|+|+++++|+ |+.|++||+.+++.+..+.+|...|.+++|+| ++.+||+|+.||.|+|||
T Consensus       267 ----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 ----DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ----TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             ----CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence                00334578899999999999998 89999999999999999999999999999999 999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3e-37  Score=342.08  Aligned_cols=301  Identities=19%  Similarity=0.262  Sum_probs=245.2

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +.+|.+.|++++|+|++..+|++|+.|++|++||+.+........+              ..+.+|...|.+++|+|+|+
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~s~dg~   78 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--------------RSFKGHSHIVQDCTLTADGA   78 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--------------EEEECCSSCEEEEEECTTSS
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--------------eEEeCCcccEEEEEECCCCC
Confidence            3459999999999998755799999999999999875432211111              14779999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeE
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      +|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~  152 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS  152 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred             EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence            99999999999999999998665   6889999999999999999  79999999999999985 667888999999999


Q ss_pred             EEeeccCC----CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          520 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       520 ~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      ++++.+..    ++..+++++.|+.|++||+........+..|...|.+++|+|+|                     ++|
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---------------------~~l  211 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---------------------TLI  211 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---------------------SEE
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---------------------CEE
Confidence            99987643    34589999999999999998877666666676666666666655                     489


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      ++++.||.|++||+.+++.+..+..+.   .+.+++|+|++.++++++.+ .+++|++... .....+..+...      
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------  280 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------  280 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------
Confidence            999999999999999999998887543   59999999999999988765 5999998765 222211110000      


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                  ....
T Consensus       281 ----------------------------------------------------------------------------~~~~  284 (319)
T 3frx_A          281 ----------------------------------------------------------------------------YSKA  284 (319)
T ss_dssp             ----------------------------------------------------------------------------CCGG
T ss_pred             ----------------------------------------------------------------------------cccC
Confidence                                                                                        0012


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQR  788 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~  788 (1120)
                      +...+.+++|+|+|++|++++.||.|++|++.+
T Consensus       285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             cCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            556788999999999999999999999999843

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-38  Score=355.49  Aligned_cols=322  Identities=14%  Similarity=0.176  Sum_probs=233.2

Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC-
Q 001224          368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-  446 (1120)
Q Consensus       368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-  446 (1120)
                      ..+.+.+++.  ++.++.+.....|++....                       ..+|...|++++|||||++||+|+. 
T Consensus         9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d   63 (357)
T 4g56_B            9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL   63 (357)
T ss_dssp             --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred             cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence            3445555554  3444445677888875432                       3469999999999999999999997 


Q ss_pred             -----CCeEEEEEccCCceeee-eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE----Eeecccc
Q 001224          447 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA  516 (1120)
Q Consensus       447 -----dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~----~~~~h~~  516 (1120)
                           |+.|++|+..++..... .....+|...|.+++|+|++.   +++++.||+|+|||+.+++...    ...+|..
T Consensus        64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~  140 (357)
T 4g56_B           64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD  140 (357)
T ss_dssp             SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred             CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence                 78899999887654321 123457899999999999987   6678889999999999887543    4457999


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|.+++|++  ++.+|++|+.|+.|++||+.+......+..|...|.+++|++++.                    ..++
T Consensus       141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~  198 (357)
T 4g56_B          141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL  198 (357)
T ss_dssp             CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred             CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence            999999865  568999999999999999999888888888888888888888765                    4689


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      +++.||.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +..+.+            
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~------------  265 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTS------------  265 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEE------------
T ss_pred             eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEE------------
Confidence            999999999999999988877766666667899999997 578999999999999998765 111100            


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (357)
T 4g56_B          266 --------------------------------------------------------------------------------  265 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                                                                                       .+|...|++++|+|+
T Consensus       266 -----------------------------------------------------------------~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          266 -----------------------------------------------------------------AVHSQNITGLAYSYH  280 (357)
T ss_dssp             -----------------------------------------------------------------CCCSSCEEEEEECSS
T ss_pred             -----------------------------------------------------------------eccceeEEEEEEcCC
Confidence                                                                             015667788888887


Q ss_pred             C-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          836 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       836 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      + ++|++|+ |++|+|||+.+++.+..+ +|...|++++|+|.++++||+|+.||+|++|++.+.
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            6 5788888 899999999988877655 699999999999977899999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-38  Score=355.38  Aligned_cols=319  Identities=15%  Similarity=0.198  Sum_probs=231.9

Q ss_pred             ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224          722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                      .++.++.+.....|++.....           ..|...|.+++|+|||++|++++.+. +++||-               
T Consensus        18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------   70 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------   70 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------
T ss_pred             eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------
Confidence            344555567778888753111           24889999999999999999999853 355542               


Q ss_pred             CceeecCCCCCccccc-CCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceee----eecCCCCCeEEEEEecC
Q 001224          802 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQ  876 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~-~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~sp~  876 (1120)
                      .+.+|+..++...... ....+|...|.+++|+|++++++++.||+|++||+.+++...    ...+|...|++++|+| 
T Consensus        71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-  149 (357)
T 4g56_B           71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-  149 (357)
T ss_dssp             EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred             eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence            2345555554422211 111237888999999999987776669999999998876543    3457899999999999 


Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCC
Q 001224          877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  955 (1120)
Q Consensus       877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~  955 (1120)
                      ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++. ++++++.|++|++||+.+++......   ...+ 
T Consensus       150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~-  225 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS-  225 (357)
T ss_dssp             SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC-
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc-
Confidence            899999999999999999999999999999999999999999875 78999999999999999865432211   1111 


Q ss_pred             CCCCCCcEEEEccCC-cEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCC
Q 001224          956 PTAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       956 ~~~~~i~~~~fspdg-~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                        ...+.+++|+|++ .+|+++ .|+.|++||+.+++++..+.  +|...|++++|+|++ ++|++|+.||+|+|||+.+
T Consensus       226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence              1368999999984 677774 78999999999999887765  789999999999987 5799999999999999999


Q ss_pred             cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1033 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1033 ~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++++..+.        |.+ .|.  +++|+|.|+.+|++++.||+|++|++.+..
T Consensus       302 ~~~~~~~~--------H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          302 SEVFRDLS--------HRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CEEEEECC--------CSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CcEeEECC--------CCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            98876542        333 366  899999889999999999999999997654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5e-37  Score=337.91  Aligned_cols=250  Identities=22%  Similarity=0.352  Sum_probs=216.4

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +.+|.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.+..                   +.+|..+|.+++|+|+++
T Consensus         9 ~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN   68 (304)
T ss_dssp             EEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred             ecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence            335999999999999999 599999999999999999887653                   677999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  518 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v  518 (1120)
                      +|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  ++++|+.|++|++||+.++ .....+.+|...|
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v  143 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred             EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence            99999999999999999998665   6889999999999999999  7999999999999999987 4567889999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      .+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.|.                   +++.+|++
T Consensus       144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s  203 (304)
T 2ynn_A          144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT  203 (304)
T ss_dssp             EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred             EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence            99999763 346999999999999999987665554432 2334444444332                   24568999


Q ss_pred             EeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          598 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       598 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++.|+.|++||+++++++..+.+|..  .|.+++|+|++.+|++|+.||+|++||..++
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999999987654  7999999999999999999999999998776

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5e-37  Score=344.51  Aligned_cols=208  Identities=16%  Similarity=0.231  Sum_probs=173.1

Q ss_pred             cccCCCC-ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          421 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       421 ~l~~h~~-~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      .+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence            3678887 999999999999999999999999999998865443334578999999999999999  7999999999999


Q ss_pred             EECCCC--ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc---eeeeCCCCceeEEEEcCCCCeE
Q 001224          500 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       500 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      ||+.++  +++..+.+|...|.+++|++  ++.+|++++.|++|++||+......   ..+..|...|            
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v------------  153 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV------------  153 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE------------
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe------------
Confidence            999876  46788999999999999965  5579999999999999999865432   2333444444            


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                               ..++|+|++++|++++.|+.|++||..++...  ..+.+|  ...|.+++|+|+|++|++++.|++|++|+
T Consensus       154 ---------~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          154 ---------KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             ---------EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ---------EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence                     44555555568999999999999999887644  455544  55899999999999999999999999999


Q ss_pred             ccC
Q 001224          653 TSD  655 (1120)
Q Consensus       653 ~~~  655 (1120)
                      ...
T Consensus       223 ~~~  225 (345)
T 3fm0_A          223 QYL  225 (345)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-37  Score=355.91  Aligned_cols=359  Identities=11%  Similarity=0.147  Sum_probs=269.2

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEec----CCCce------eEeeceeeeccCCCCcccccccccCCCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGV  427 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~h~~  427 (1120)
                      .....|.+.|++++|+|+|+.+||+|+.||.|+|||+    .+++.      .......         ........+|.+
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  109 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTN  109 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CB
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCC
Confidence            3344577999999999999944999999999999999    88773      2210000         000011234788


Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      .|.+++|+|++++|++|+.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcE
Confidence            999999999999999999999999999 4454444   6788999999999999999  799999999999999999999


Q ss_pred             eEEeeccccC---------------eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC
Q 001224          508 QYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  572 (1120)
Q Consensus       508 ~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~  572 (1120)
                      +..+..+...               +.+++|++.   ..+++++.||.|++||+........+..+...+.+++|+|++ 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-  259 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-  259 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-
Confidence            9999888777               888888654   368999999999999999887777777776666666666655 


Q ss_pred             eEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                                          ++|++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++ ++++++.|+.|++||
T Consensus       260 --------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d  316 (425)
T 1r5m_A          260 --------------------KLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWS  316 (425)
T ss_dssp             --------------------TEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             --------------------CEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEE
Confidence                                479999999999999999999998887554  479999999999 999999999999999


Q ss_pred             ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224          653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  732 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  732 (1120)
                      +.++ .....+                                                                     
T Consensus       317 ~~~~-~~~~~~---------------------------------------------------------------------  326 (425)
T 1r5m_A          317 LKQN-TLLALS---------------------------------------------------------------------  326 (425)
T ss_dssp             TTTT-EEEEEE---------------------------------------------------------------------
T ss_pred             CCCC-cEeEec---------------------------------------------------------------------
Confidence            8765 111111                                                                     


Q ss_pred             eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                                           ..|...|.+++|+|+++.+++++.||.|++|++.....                     
T Consensus       327 ---------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~---------------------  364 (425)
T 1r5m_A          327 ---------------------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS---------------------  364 (425)
T ss_dssp             ---------------------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------
T ss_pred             ---------------------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc---------------------
Confidence                                 11456778888888888888888888888888642110                     


Q ss_pred             cccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCCcE
Q 001224          813 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSI  890 (1120)
Q Consensus       813 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v  890 (1120)
                       ..            ..         +....++.   +.......+..+..|..  .|++++|+| ++++|++|+.||.|
T Consensus       365 -~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          365 -KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEG  418 (425)
T ss_dssp             ---------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCC
T ss_pred             -ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceE
Confidence             00            00         00001222   22223346778888866  999999999 89999999999999


Q ss_pred             EEEEee
Q 001224          891 QIYNVR  896 (1120)
Q Consensus       891 ~vwd~~  896 (1120)
                      ++|++.
T Consensus       419 ~iw~~~  424 (425)
T 1r5m_A          419 SVVAIP  424 (425)
T ss_dssp             EEEECC
T ss_pred             EEEeec
Confidence            999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-37  Score=354.73  Aligned_cols=306  Identities=17%  Similarity=0.271  Sum_probs=249.9

Q ss_pred             EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224          450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI  529 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  529 (1120)
                      +..|+.....+.   .++.+|.+.|++++|+|+++  +|++|+.|++|+|||+.+++.+..+.+|...|.+++|++  ++
T Consensus        48 ~~~~~~~~~~~~---~~l~gH~~~V~~~~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g  120 (380)
T 3iz6_a           48 AVSFNPTDLVCC---RTLQGHSGKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NG  120 (380)
T ss_dssp             CCCCCCCCCEEE---EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TS
T ss_pred             ccccccceeEEe---ecccccccEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CC
Confidence            334555554433   37899999999999999999  699999999999999999999999999999999999864  56


Q ss_pred             eEEEEEecCCeEEEEecCCCC-------CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          530 QFIFSTALDGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       530 ~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      .+|++|+.|+.+++||+....       ....+.+|...+.++.|.|++.                    ..|++|+.|+
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~--------------------~~l~s~s~D~  180 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--------------------TRLITGSGDQ  180 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS--------------------SCEEEECTTS
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC--------------------CEEEEECCCC
Confidence            899999999999999987532       2234455666666666666543                    4699999999


Q ss_pred             eEEEEECCCCceeEEEec---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          603 SIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      +|++||+.+++.+..+..   .++...|.+++|++ ++.++++|+.|++|++||++........                
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~----------------  244 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT----------------  244 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE----------------
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE----------------
Confidence            999999999998887732   23455789999987 8899999999999999997532100000                


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (380)
T 3iz6_a          245 --------------------------------------------------------------------------------  244 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                                                                                 +  .+|...|.+++|+|++++
T Consensus       245 -----------------------------------------------------------~--~~h~~~v~~v~~~p~~~~  263 (380)
T 3iz6_a          245 -----------------------------------------------------------Y--HGHEGDINSVKFFPDGQR  263 (380)
T ss_dssp             -----------------------------------------------------------E--CCCSSCCCEEEECTTSSE
T ss_pred             -----------------------------------------------------------E--CCcCCCeEEEEEecCCCe
Confidence                                                                       0  016777888888888888


Q ss_pred             EEEEe-CCcEEEEEcCCCceeeeecCCC-------CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee----cc
Q 001224          839 VMSAS-GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KG  906 (1120)
Q Consensus       839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l----~~  906 (1120)
                      |++|+ |++|++||+.+++.+..+..+.       ..|++++|+| ++++|++|+.||.|++||+.+++.+..+    .+
T Consensus       264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  342 (380)
T 3iz6_a          264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS  342 (380)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSS
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCC
Confidence            88888 8888899888888777765432       3489999999 9999999999999999999988877776    68


Q ss_pred             cccceEEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224          907 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  940 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~  940 (1120)
                      |.+.|++++|+|||++|++|+.|++|+||++...
T Consensus       343 h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          343 HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999999999999999999999999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.6e-37  Score=353.75  Aligned_cols=300  Identities=18%  Similarity=0.291  Sum_probs=248.6

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++....                   +.+|...|.+++|+|+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAPN  119 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECTT
T ss_pred             ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECCC
Confidence            345569999999999999995 99999999999999999887763                   6789999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  511 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--  511 (1120)
                      |++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++++..+  
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            99999999999999999975421    1122357899999999999998654 6999999999999999999999887  


Q ss_pred             ---eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          512 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       512 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                         .+|...|.+++|++ .++.+|++|+.|++|++||++. ......+..|...|.+++|+|+|                
T Consensus       199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~----------------  261 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG----------------  261 (380)
T ss_dssp             CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS----------------
T ss_pred             ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC----------------
Confidence               67999999999865 3557999999999999999984 35555666676666666666655                


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-----CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhh
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  662 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  662 (1120)
                           ++|++++.||+|++||+.+++.+..+..+..     ...+.+++|+|+|++|++|+.||.|++||..++. ....
T Consensus       262 -----~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~~~  335 (380)
T 3iz6_a          262 -----QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MVLN  335 (380)
T ss_dssp             -----SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EEEE
T ss_pred             -----CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eEEE
Confidence                 5899999999999999999999888765432     2348899999999999999999999999986651 1111


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCC
Q 001224          663 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  742 (1120)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~  742 (1120)
                      +.                                                                              
T Consensus       336 ~~------------------------------------------------------------------------------  337 (380)
T 3iz6_a          336 LG------------------------------------------------------------------------------  337 (380)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             CccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeec
Q 001224          743 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  787 (1120)
Q Consensus       743 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~  787 (1120)
                              ....+|...|.+++|+|+|..|++++.|+.|++|++.
T Consensus       338 --------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          338 --------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             --------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             --------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                    0002378889999999999999999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=346.28  Aligned_cols=295  Identities=15%  Similarity=0.157  Sum_probs=229.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC-cccccCCCCCCCCCccEEEEcc
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                      +...|.+++|+|||+.|++++ |+.+++|+...               .+|+..... ..........+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            567799999999999777665 77889997522               122211100 0000000112567899999999


Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeee----ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeeccccc
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      ++ .+++|+ ||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+
T Consensus        93 d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            96 566666 99999999998876544    448999999999999 999999999999999999999999999999999


Q ss_pred             ceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEc
Q 001224          910 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFET  986 (1120)
Q Consensus       910 ~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~  986 (1120)
                      .|++++|++++. +|++++.|++|++||+.+++.....  .. ..+.   ..+.+++|+|+ +++|+++ .|+.|++||+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--GC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--C-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeee--ec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            999999999984 7899999999999999986542211  11 1111   35789999995 5677775 7899999999


Q ss_pred             CCceeeeccccCCCCCCeeEEEECCCC-cEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCC
Q 001224          987 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1065 (1120)
Q Consensus       987 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d 1065 (1120)
                      .+++++..+.  +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +.       +|.+. |.  +++|+|++
T Consensus       245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~  311 (344)
T 4gqb_B          245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN  311 (344)
T ss_dssp             CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred             CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence            9999988876  899999999999998 579999999999999999998763 33       44333 66  89999965


Q ss_pred             CCEEEEEeCCCcEEEEecCCCC
Q 001224         1066 PNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1066 ~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ..+|++++.||+|++|++.+..
T Consensus       312 ~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          312 HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTEEEEEETTSCEEEEECCC--
T ss_pred             CeEEEEEcCCCeEEEEECCCCC
Confidence            5678899999999999998754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-36  Score=335.01  Aligned_cols=289  Identities=20%  Similarity=0.271  Sum_probs=245.6

Q ss_pred             eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE
Q 001224          465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  544 (1120)
Q Consensus       465 ~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  544 (1120)
                      .++.+|.+.|.+++|+|+++  +|++++.||+|++||+.++..+..+.+|..+|.+++|+++  +++|++|+.|++|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEEE
T ss_pred             EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEEE
Confidence            46889999999999999999  7999999999999999999999999999999999998654  5799999999999999


Q ss_pred             ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEEecCCC
Q 001224          545 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG  623 (1120)
Q Consensus       545 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  623 (1120)
                      |+.+++....+..|...|.+++|+|++.                     +|++|+.||+|++||+.++. ....+..|. 
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-  140 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGHE-  140 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence            9999888888888877777777776664                     79999999999999998874 445666554 


Q ss_pred             CCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001224          624 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  702 (1120)
Q Consensus       624 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1120)
                       ..|.+++|+| ++.+|++|+.|++|++||+.++.... .+                                       
T Consensus       141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~-~~---------------------------------------  179 (304)
T 2ynn_A          141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF-TL---------------------------------------  179 (304)
T ss_dssp             -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE-EE---------------------------------------
T ss_pred             -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc-ee---------------------------------------
Confidence             4799999999 68999999999999999985441000 00                                       


Q ss_pred             cccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEE
Q 001224          703 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  782 (1120)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  782 (1120)
                                                                                            .         
T Consensus       180 ----------------------------------------------------------------------~---------  180 (304)
T 2ynn_A          180 ----------------------------------------------------------------------T---------  180 (304)
T ss_dssp             ----------------------------------------------------------------------E---------
T ss_pred             ----------------------------------------------------------------------c---------
Confidence                                                                                  0         


Q ss_pred             EeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc--CCCEEEEEe-CCcEEEEEcCCCceee
Q 001224          783 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA  859 (1120)
Q Consensus       783 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~--d~~~l~~~s-dg~i~vwd~~~~~~~~  859 (1120)
                                                            ..+...+..++++|  ++.+|++++ |++|++||+.+++++.
T Consensus       181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~  222 (304)
T 2ynn_A          181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (304)
T ss_dssp             --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence                                                  00334455566654  677899998 8999999999999999


Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCC--EEEEEeCCCCEEEEEC
Q 001224          860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS  937 (1120)
Q Consensus       860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~v~iWd~  937 (1120)
                      ++.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++.  ++++|+.|| +.+|++
T Consensus       223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            9999999999999999 899999999999999999999999999999999999999999875  578877666 788887


Q ss_pred             CC
Q 001224          938 DG  939 (1120)
Q Consensus       938 ~~  939 (1120)
                      ..
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            65

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.1e-36  Score=333.96  Aligned_cols=214  Identities=19%  Similarity=0.293  Sum_probs=183.2

Q ss_pred             cccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCce--eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          421 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+...  -.....+.+|...|.+++|+|+++  ++++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            478999999999999965 8999999999999999975322  123457889999999999999999  79999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      ++||+.+++++..+.+|...|.+++|++  ++.+|++|+.|++|++||++. .....+..|...+..+.+.|.+.     
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~-----  161 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK-----  161 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence            9999999999999999999999999865  457999999999999999964 55666777888888888877653     


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                ..+++..+++++.|+.|++||+.+++....+.+|.  ..|.+++|+|+|++|++++.||.|++||+.++
T Consensus       162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                      12345579999999999999999999888887664  47999999999999999999999999998655

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-38  Score=367.79  Aligned_cols=332  Identities=13%  Similarity=0.179  Sum_probs=269.5

Q ss_pred             CceEEEEEcCCCC-eEEEE----------ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC
Q 001224          427 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  495 (1120)
Q Consensus       427 ~~V~~l~~spdg~-~las~----------~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~  495 (1120)
                      ..|.+++|+|+|+ +||+|          +.|+.|+|||+.++........ ..|...|.+++|+|+++  +|++++.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~dg   89 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDNG   89 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccCC
Confidence            4789999999997 99999          8899999999998763322222 35889999999999999  699999999


Q ss_pred             cEEEEECCC----CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC------Cceee---eCCCCce
Q 001224          496 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC  562 (1120)
Q Consensus       496 ~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~---~~~~~~v  562 (1120)
                      .|++||+.+    .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+..      ....+   ..|...+
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            999999987    4588899999999999999765 24699999999999999998865      22222   3344455


Q ss_pred             eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----CCCcCeEEEcCCC-C
Q 001224          563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C  637 (1120)
Q Consensus       563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~  637 (1120)
                      .+++|+|++                    +..+++++.||.|++||+.+++.+..+..+..    ...+.+++|+|++ .
T Consensus       169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence            555555542                    36899999999999999999999888876531    3579999999997 6


Q ss_pred             EEEEEECCC---cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224          638 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  714 (1120)
Q Consensus       638 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1120)
                      ++++++.|+   .|++||+.++......                                                    
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~----------------------------------------------------  256 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTPLQT----------------------------------------------------  256 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSCSBC----------------------------------------------------
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCCcEE----------------------------------------------------
Confidence            899999998   9999998654110000                                                    


Q ss_pred             cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224          715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  794 (1120)
Q Consensus       715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  794 (1120)
                                                                                                      
T Consensus       257 --------------------------------------------------------------------------------  256 (416)
T 2pm9_A          257 --------------------------------------------------------------------------------  256 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEE
Q 001224          795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA  872 (1120)
Q Consensus       795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~  872 (1120)
                                             +. .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+..|...|.+++
T Consensus       257 -----------------------~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~  312 (416)
T 2pm9_A          257 -----------------------LN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK  312 (416)
T ss_dssp             -----------------------CC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred             -----------------------ee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence                                   00 01667788888888 888888888 89999999999999999999999999999


Q ss_pred             EecCCC-cEEEEEeCCCcEEEEEeecceeeEeec-----------------------------------ccccceEEEEE
Q 001224          873 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF  916 (1120)
Q Consensus       873 ~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~  916 (1120)
                      |+| ++ .+|++++.||.|++||+.+++......                                   .|...+++++|
T Consensus       313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (416)
T 2pm9_A          313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW  391 (416)
T ss_dssp             ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred             ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence            999 66 899999999999999998765332221                                   16778889999


Q ss_pred             ccCCCEEEEEeCCCCEEEEECCC
Q 001224          917 SHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       917 s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      +|||++|++++.|++|+||++.+
T Consensus       392 s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          392 AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             eeCCeEEEEeCCCCeEEEEEecc
Confidence            99999999999999999999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=344.08  Aligned_cols=292  Identities=13%  Similarity=0.127  Sum_probs=231.8

Q ss_pred             cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC--------ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC
Q 001224          423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  494 (1120)
Q Consensus       423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d  494 (1120)
                      ..|...|.+++|||||++|++++ |+++++||....        ...........|...|.+++|+|++.   +++|+.|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~d  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASDS  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEECC
Confidence            35777899999999999999888 777888864211        00001111234667899999999865   8899999


Q ss_pred             CcEEEEECCCCceeEE----eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCC
Q 001224          495 KTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  570 (1120)
Q Consensus       495 ~~i~vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  570 (1120)
                      |+|+|||+.+++.+..    +.+|.+.|.+++|++  ++.+|++|+.|++|++||+.+++....+..|...|.+++|+++
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp--dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS--SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH  180 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence            9999999999887654    358999999999865  5689999999999999999998888888888888888888887


Q ss_pred             CCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEE
Q 001224          571 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIK  649 (1120)
Q Consensus       571 g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  649 (1120)
                      +.                    ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|+
T Consensus       181 ~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          181 KD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             CT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             CC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            75                    468999999999999999999988886555555788999999 567899999999999


Q ss_pred             EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224          650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  729 (1120)
Q Consensus       650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  729 (1120)
                      +||+.++ +.+..+                                                                  
T Consensus       241 ~wd~~~~-~~~~~~------------------------------------------------------------------  253 (344)
T 4gqb_B          241 LVDTKST-SCVLSS------------------------------------------------------------------  253 (344)
T ss_dssp             EEESCC---CCEEE------------------------------------------------------------------
T ss_pred             EEECCCC-cEEEEE------------------------------------------------------------------
Confidence            9998765 111100                                                                  


Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  809 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~  809 (1120)
                                                                                                      
T Consensus       254 --------------------------------------------------------------------------------  253 (344)
T 4gqb_B          254 --------------------------------------------------------------------------------  253 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccCCCCCCCCCccEEEEccCC-CEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC
Q 001224          810 SGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD  887 (1120)
Q Consensus       810 ~g~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  887 (1120)
                               .  +|...|++++|+|++ ++|++|+ |++|+|||+.++++. .+.+|...|++++|+|++..+|++|+.|
T Consensus       254 ---------~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          254 ---------A--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             ---------E--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             ---------c--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCC
Confidence                     0  166778888888887 5788888 899999999887754 5678999999999999555678899999


Q ss_pred             CcEEEEEeecce
Q 001224          888 SSIQIYNVRVDE  899 (1120)
Q Consensus       888 g~v~vwd~~~~~  899 (1120)
                      |+|++|++.+..
T Consensus       322 ~~v~~w~v~~~~  333 (344)
T 4gqb_B          322 HQVVHHVVPTEP  333 (344)
T ss_dssp             SCEEEEECCC--
T ss_pred             CeEEEEECCCCC
Confidence            999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.8e-36  Score=338.24  Aligned_cols=289  Identities=14%  Similarity=0.195  Sum_probs=247.6

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|++++|+||+++||+|+.||+|+|||..+++...   .+..|...|.+++|+|+|.  ++++|+.|+.+++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence            378999999999999999999999999999999999887554   5678899999999999999  79999999999999


Q ss_pred             ECCCC------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeE
Q 001224          501 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       501 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      ++...      .....+.+|...|.+++|+++  +..|++++.|++|++||+.+.+....+..|...+.++.++|+.   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~---  208 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE---  208 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence            98653      345678889999999998654  4689999999999999999988888888887777777766532   


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                                      ++++|++|+.||.|++||+++++++..+..|.  ..|.+++|+|++.+|++++.|++|++||+.
T Consensus       209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                            23589999999999999999999999887664  479999999999999999999999999986


Q ss_pred             CcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee
Q 001224          655 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  734 (1120)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  734 (1120)
                      .+.. ..                                                                         
T Consensus       271 ~~~~-~~-------------------------------------------------------------------------  276 (354)
T 2pbi_B          271 ADRE-VA-------------------------------------------------------------------------  276 (354)
T ss_dssp             TTEE-EE-------------------------------------------------------------------------
T ss_pred             CCcE-EE-------------------------------------------------------------------------
Confidence            5410 00                                                                         


Q ss_pred             eecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcc
Q 001224          735 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  814 (1120)
Q Consensus       735 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  814 (1120)
                                                                      ++.                             
T Consensus       277 ------------------------------------------------~~~-----------------------------  279 (354)
T 2pbi_B          277 ------------------------------------------------IYS-----------------------------  279 (354)
T ss_dssp             ------------------------------------------------EEC-----------------------------
T ss_pred             ------------------------------------------------EEc-----------------------------
Confidence                                                            000                             


Q ss_pred             cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          815 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       815 ~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                           ...+...+.+++|+|+++++++|+ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||.|+||
T Consensus       280 -----~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          280 -----KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             -----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred             -----CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence                 000234567889999999999998 89999999999999999999999999999999 99999999999999999


Q ss_pred             E
Q 001224          894 N  894 (1120)
Q Consensus       894 d  894 (1120)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.6e-36  Score=336.03  Aligned_cols=216  Identities=20%  Similarity=0.311  Sum_probs=180.5

Q ss_pred             cccCCCCceEEEEE-----cC-CCCeEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEE
Q 001224          421 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  490 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~-----sp-dg~~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s  490 (1120)
                      .+.+|.+.|++++|     ++ |+++||+|+.|++|++||+.+++.    ......+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            58899999999999     77 999999999999999999976532    123446889999999999999999  7999


Q ss_pred             ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEE
Q 001224          491 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY  567 (1120)
Q Consensus       491 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~  567 (1120)
                      |+.|++|++||+.+++++..+.+|...|.+++|++  ++.+|++++.|++|++||+.. .......   .|...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            99999999999999999999999999999999965  457999999999999999973 2222222   56677888888


Q ss_pred             cCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224          568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  647 (1120)
Q Consensus       568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  647 (1120)
                      +|++...           ..+.|.+.++++++.||.|++||. +.+....+..|.  ..|.+++|+|+|++|++|+.||.
T Consensus       171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence            8876411           123455678999999999999994 566666776554  47999999999999999999999


Q ss_pred             EEEEEccC
Q 001224          648 IKILATSD  655 (1120)
Q Consensus       648 i~iwd~~~  655 (1120)
                      |++||+.+
T Consensus       237 v~iwd~~~  244 (343)
T 2xzm_R          237 LLIWDILN  244 (343)
T ss_dssp             EEEEESSC
T ss_pred             EEEEECCC
Confidence            99999743

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.5e-36  Score=334.82  Aligned_cols=324  Identities=14%  Similarity=0.170  Sum_probs=264.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +.+.|.+++|+|||+. ++++..++.+.+|+........                   ...+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence            5678999999999995 7777777777776655433322                   1347999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV  518 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v  518 (1120)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+.+|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            999 9999999999876554443444  7999999999999999  79999999999999999887  667788899999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|++  ++.++++++.||.|++||+.+.+....+..|...+.+++|+|++                     ++++++
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~  201 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---------------------TKLWTG  201 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---------------------CEEEEE
Confidence            9999865  55799999999999999999877666666666666666655555                     589999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      +.||.|++||+.+++.+..+...   ..+.+++|+|+++++++++.++.|++||+.++. ..                  
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~------------------  259 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KY------------------  259 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EE------------------
T ss_pred             ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eE------------------
Confidence            99999999999999988887643   358999999999999999999999999976541 00                  


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (337)
T 1gxr_A          260 --------------------------------------------------------------------------------  259 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                                             .                                   +  ..|...+.+++|+|++++
T Consensus       260 -----------------------~-----------------------------------~--~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          260 -----------------------Q-----------------------------------L--HLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             -----------------------E-----------------------------------E--CCCSSCEEEEEECTTSSE
T ss_pred             -----------------------E-----------------------------------E--cCCccceeEEEECCCCCE
Confidence                                   0                                   0  015666778888888888


Q ss_pred             EEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          839 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      +++++ ||.|++||+.+++.+.... |...|.+++|+| ++++|++++.||.|++|++.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence            88887 7888899888877765543 778899999999 89999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=337.37  Aligned_cols=301  Identities=16%  Similarity=0.213  Sum_probs=238.8

Q ss_pred             cccc-cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          755 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       755 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      +|.. .|..++|+|+|++|++++.|+.|++|++.....                      ........+|...|.+++|+
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~s   70 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWS   70 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEEC
Confidence            3666 899999999999999999999999999743211                      00000012389999999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeEeeccc
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH  907 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h  907 (1120)
                      |++++|++++ |++|++|++..+  +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++   +++..+.+|
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            9999999999 999999998865  45778999999999999999 8999999999999999999875   456778899


Q ss_pred             ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001224          908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  986 (1120)
Q Consensus       908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~  986 (1120)
                      ...|.+++|+|++++|++++.|++|++||+.+++.   .+.....+|..   .|.+++|+|+|++|++ +.|+.|++||.
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            99999999999999999999999999999887532   23445566654   8999999999999999 58999999996


Q ss_pred             CCc---------------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee--eCCCcccCCCC
Q 001224          987 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGV 1049 (1120)
Q Consensus       987 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~--~~~~~~~~~g~ 1049 (1120)
                      ...               .++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+.....  +........+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h  302 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH  302 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred             ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence            332               2222222 24789999999999999999999999999999876532110  00001112244


Q ss_pred             CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224         1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus      1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
                      .. .|.  +++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus       303 ~~-~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          303 SQ-DVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SS-CEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             cC-cEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            33 366  8999996557999999999999999998773

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-38  Score=361.95  Aligned_cols=366  Identities=14%  Similarity=0.183  Sum_probs=268.1

Q ss_pred             CCCCceEEEEecCCCeEEEEE----------eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      +...|++++|+|+|+.++++|          +.||.|+|||+.+++....  +               ....|...|.++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~   73 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDL   73 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEE
Confidence            446789999999998779999          8899999999998763210  0               123588999999


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCce-eeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCc----
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA----  506 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~----  506 (1120)
                      +|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +.  +|++++.|+.|++||+.+++    
T Consensus        74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence            9999999999999999999999987211 1133368899999999999999 66  79999999999999999887    


Q ss_pred             --eeE---EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC------CCceeEEEEcCCCCeEE
Q 001224          507 --KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       507 --~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~~~  575 (1120)
                        ...   .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+      ...+.+++|+|++.   
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  227 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS---  227 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT---
T ss_pred             cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC---
Confidence              333   346799999999997652 469999999999999999987766666554      44455555555543   


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCC---eEEEEECCCC-ceeEEEe-cCCCCCCcCeEEEcC-CCCEEEEEECCCcEE
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIK  649 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  649 (1120)
                                       .++++++.|+   .|++||++++ ..+..+. .|  ...|.+++|+| ++++|++++.||.|+
T Consensus       228 -----------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~  288 (416)
T 2pm9_A          228 -----------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVL  288 (416)
T ss_dssp             -----------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEE
T ss_pred             -----------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEE
Confidence                             5799999998   9999999986 5555555 44  44799999999 999999999999999


Q ss_pred             EEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCC
Q 001224          650 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  729 (1120)
Q Consensus       650 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  729 (1120)
                      +||+.++ +.+..+                                                                  
T Consensus       289 ~wd~~~~-~~~~~~------------------------------------------------------------------  301 (416)
T 2pm9_A          289 LWNPESA-EQLSQF------------------------------------------------------------------  301 (416)
T ss_dssp             EECSSSC-CEEEEE------------------------------------------------------------------
T ss_pred             EeeCCCC-ccceee------------------------------------------------------------------
Confidence            9998766 222211                                                                  


Q ss_pred             CcceeeecccCCCCccceeeccCCccccccEEEEEEcCCC-ceEEEeccCceEEEeeecccccCCCCccccccCceeecC
Q 001224          730 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  808 (1120)
Q Consensus       730 ~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~  808 (1120)
                                              ..|...|.+++|+|++ ..+++++.|+.|++|++...                   
T Consensus       302 ------------------------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~-------------------  338 (416)
T 2pm9_A          302 ------------------------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL-------------------  338 (416)
T ss_dssp             ------------------------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC-------------------
T ss_pred             ------------------------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC-------------------
Confidence                                    1256678889999999 88999999999999987321                   


Q ss_pred             CCCCcccccCCCCCCCC-----CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEE
Q 001224          809 PSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  883 (1120)
Q Consensus       809 ~~g~~~~~~~~~~~~~~-----~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las  883 (1120)
                         ....    .  ...     ......+.+.+..++.+..  +..     ... .....|...+.+++|+| |+++||+
T Consensus       339 ---~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~-~~~~~~~~~~~~~~~s~-dg~~la~  400 (416)
T 2pm9_A          339 ---TNTL----D--EQETETKQQESETDFWNNVSREESKEK--PSV-----FHL-QAPTWYGEPSPAAHWAF-GGKLVQI  400 (416)
T ss_dssp             ---CCSS----C--C----------------------CCSC--CCS-----SCC-CCCSTTCCCSCCCEEET-TTEEECB
T ss_pred             ---CCCc----c--cccccccccCCcccccccccccccccc--ccc-----ccc-cCCccccCCccceEEee-CCeEEEE
Confidence               1000    0  110     0011112222222222211  100     111 22334677888999999 9999999


Q ss_pred             EeCCCcEEEEEeecc
Q 001224          884 GMDDSSIQIYNVRVD  898 (1120)
Q Consensus       884 g~~dg~v~vwd~~~~  898 (1120)
                      |+.||.|+||++.+.
T Consensus       401 ~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          401 TPDGKGVSITNPKIS  415 (416)
T ss_dssp             CTTSSCBCCBCCCCC
T ss_pred             eCCCCeEEEEEeccC
Confidence            999999999998764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-36  Score=352.37  Aligned_cols=353  Identities=12%  Similarity=0.121  Sum_probs=290.3

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      ..+++++|+|+|++ |++|+.||.|++||+.+++...                   .+..| ..+....|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence            44568999999996 9999999999999998876432                   23445 456666889999999999


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      +.||.|++||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999887554   5679999999999999999  79999999999999999999999999999999999997


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeC---CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      +  ++.+|++++.||.|++||+.+.+....+..   +...+.++++.+++...........+..++|+|++++|++++.|
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence            5  457999999999999999998887777764   56788999998887766555566788889999999999999999


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      |.|++||+.+++.+..+.. .+...+.+++|+|++. +|++|+.||.|++||+.++...+..+..+.....         
T Consensus       269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v---------  338 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI---------  338 (420)
T ss_dssp             SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------
T ss_pred             CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------
Confidence            9999999999988877753 3345799999999999 9999999999999999987554555544322111         


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccC--Cccccc
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP--ENLRAT  758 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~  758 (1120)
                                                      .....+++.++++++.|+.+++|++..............+  ...+..
T Consensus       339 --------------------------------~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  386 (420)
T 3vl1_A          339 --------------------------------NNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDD  386 (420)
T ss_dssp             --------------------------------EEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSC
T ss_pred             --------------------------------eEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCc
Confidence                                            1123456789999999999999999875444333222111  135788


Q ss_pred             cEEEEEEcCCCc---eEEEeccCceEEEeeec
Q 001224          759 KISRLIFTNSGN---AILALASNAIHLLWKWQ  787 (1120)
Q Consensus       759 ~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~  787 (1120)
                      .|.+++|+|++.   .+++++.+|.+.+|++.
T Consensus       387 ~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          387 AVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             CCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             ceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            999999999999   89999999999999873

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.7e-35  Score=323.51  Aligned_cols=251  Identities=18%  Similarity=0.276  Sum_probs=214.3

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      ...+|...|++++|+|+|+ +|++|+.||.|+||++.+++...                   .+.+|...|.+++|+|++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~   77 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS   77 (312)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence            3446999999999999999 59999999999999999887665                   367899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      ++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|+.|++||+++++++..+..|...|
T Consensus        78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  152 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV  152 (312)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence            999999999999999999988665   6889999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|++  ++.+|++++.||.|++||+.+.+....+...                    ....+..++|+|++++|+++
T Consensus       153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------------DNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------------SCCCEEEEEECTTSSEEEEE
T ss_pred             EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------------CCCceEEEEECCCCCEEEEE
Confidence            9999865  5579999999999999999876554433211                    11245556666666789999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCc
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.||.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            99999999999999999988876553333334444 68899999999999999998766

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-35  Score=337.15  Aligned_cols=303  Identities=18%  Similarity=0.299  Sum_probs=228.4

Q ss_pred             CCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccc------------------cCeEEEEEcCCCCc
Q 001224          424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ  485 (1120)
Q Consensus       424 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~d~~~  485 (1120)
                      +|.+.|.+++|||||++||+|+ ++.++||++.+++.+.   .+.+|.                  ..|.+++|+|+|+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999987 6889999999988665   344332                  2499999999999 


Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  565 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  565 (1120)
                       +|++|+.|+.|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+.+                 
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~-----------------  196 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT-----------------  196 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCC-----------------
Confidence             799999999999999999999999999999998888754  345666666666666666543                 


Q ss_pred             EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224          566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  644 (1120)
Q Consensus       566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  644 (1120)
                                                                    ++....+..+   ..+.+++|+| +++++++|+.
T Consensus       197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred             ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence                                                          3333333322   2478899999 8999999999


Q ss_pred             CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee
Q 001224          645 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  724 (1120)
Q Consensus       645 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  724 (1120)
                      |+.|++||+.++ .....+....                                                         
T Consensus       228 d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------------------------  249 (393)
T 1erj_A          228 DRAVRVWDSETG-FLVERLDSEN---------------------------------------------------------  249 (393)
T ss_dssp             TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred             CCcEEEEECCCC-cEEEeecccc---------------------------------------------------------
Confidence            999999998776 2211110000                                                         


Q ss_pred             eccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCce
Q 001224          725 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  804 (1120)
Q Consensus       725 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  804 (1120)
                                                ....+|...|.+++|+|+|+.+++++.|+.|++||+....              
T Consensus       250 --------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~--------------  289 (393)
T 1erj_A          250 --------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN--------------  289 (393)
T ss_dssp             -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred             --------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------------
Confidence                                      0002366677777777777777777777777777652100              


Q ss_pred             eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEE
Q 001224          805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  884 (1120)
Q Consensus       805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg  884 (1120)
                              .             .....                   ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus       290 --------~-------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg  328 (393)
T 1erj_A          290 --------N-------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG  328 (393)
T ss_dssp             ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred             --------C-------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence                    0             00000                   0012344556778999999999999 89999999


Q ss_pred             eCCCcEEEEEeecceeeEeecccccceEEEEEcc------CCCEEEEEeCCCCEEEEECCC
Q 001224          885 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       885 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      +.||.|++||+.+++.+..+.+|.+.|.+++|++      ++.+|++|+.||+|+||++..
T Consensus       329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999999999999999999999999999999986      688999999999999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-37  Score=357.47  Aligned_cols=355  Identities=11%  Similarity=0.072  Sum_probs=235.9

Q ss_pred             CcceeeeccCCCCceEEEEecCC---------CeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccC
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  424 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg---------~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  424 (1120)
                      ..+...++.+++.|.+|+|+|++         + +||+|+.++..                                   
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~-----------------------------------  166 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD-----------------------------------  166 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence            44556677789999999999997         4 68888755310                                   


Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceee-eeeeecccccCeEEEEEcCC------CCceEEEEecCCCcE
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI  497 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~s~d~~i  497 (1120)
                             -..+|+++.||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+      +.  +|++++.||+|
T Consensus       167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv  237 (524)
T 2j04_B          167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI  237 (524)
T ss_dssp             ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred             -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence                   0136899999999999999999998876421 12346678899999999997      45  79999999999


Q ss_pred             EEEECCCCce-----------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-ceeeeCCCCceeEE
Q 001224          498 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM  565 (1120)
Q Consensus       498 ~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~  565 (1120)
                      ++||+.++..           ..++.+|...|.+++|++.   ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus       238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            9999987642           3478899999999999753   3799999999999999987543 34566677767666


Q ss_pred             --EEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE
Q 001224          566 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       566 --~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                        +++++|.                    .+|++++.|++|++||+++++++..+..+.....|.+++|+|+++.+++++
T Consensus       315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~  374 (524)
T 2j04_B          315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD  374 (524)
T ss_dssp             EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred             EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence              3445441                    579999999999999999988777666543323478999999999999999


Q ss_pred             CCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcce
Q 001224          644 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  723 (1120)
Q Consensus       644 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  723 (1120)
                      .|++|++||++++. ....+                                                            
T Consensus       375 ~d~tv~lwd~~~~~-~~~~l------------------------------------------------------------  393 (524)
T 2j04_B          375 GASSLRAVPSRAAF-AVHPL------------------------------------------------------------  393 (524)
T ss_dssp             SSSEEEEEETTCTT-CCEEE------------------------------------------------------------
T ss_pred             CCCcEEEEECcccc-cceee------------------------------------------------------------
Confidence            99999999986651 11000                                                            


Q ss_pred             eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224          724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  803 (1120)
Q Consensus       724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  803 (1120)
                                                    .+                                                
T Consensus       394 ------------------------------~g------------------------------------------------  395 (524)
T 2j04_B          394 ------------------------------VS------------------------------------------------  395 (524)
T ss_dssp             ------------------------------EE------------------------------------------------
T ss_pred             ------------------------------ec------------------------------------------------
Confidence                                          01                                                


Q ss_pred             eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC-----CCCCeEEEEEecCC
Q 001224          804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD  877 (1120)
Q Consensus       804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d  877 (1120)
                                         |...|.+++|+|++++|++|+ |++|++||+... .+.....     +...+.+++|+| +
T Consensus       396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~  454 (524)
T 2j04_B          396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K  454 (524)
T ss_dssp             -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred             -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence                               444555555555555555555 555555555432 1111110     112466888999 6


Q ss_pred             CcEEEEEeCCCcEEEEEee-cceeeEeecccccceEEEEEccCCC---EEEEEeCCCCEEEEECCC
Q 001224          878 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~iWd~~~  939 (1120)
                      +..+. ...  .+++|+.. ++.++..+.+|...|++|+|+|++.   +||+|+.||+|+||++..
T Consensus       455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            66543 222  23344433 4677888999999999999999964   999999999999999876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.7e-35  Score=322.96  Aligned_cols=291  Identities=21%  Similarity=0.368  Sum_probs=243.6

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|...|++++|+|+|++||+|+.||.|++|++.+++...   .+.+|...|.+++|+|+++  +|++|+.|+.|++|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw   92 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW   92 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence            478999999999999999999999999999999999887655   6789999999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |+.+++++..+.+|...|.+++|++  ++.+|++++.|+.|++||+++.+....+..|...+.+++|+|++         
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------  161 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG---------  161 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC---------
Confidence            9999999999999999999999865  45799999999999999999887777776666666666665555         


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                  +++++++.||.|++||+.+++.+..+... +...+.+++|+|++++|++++.|+.|++||+.++ +..
T Consensus       162 ------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~  227 (312)
T 4ery_A          162 ------------SLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL  227 (312)
T ss_dssp             ------------SEEEEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred             ------------CEEEEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence                        58999999999999999999888777533 2346889999999999999999999999998765 211


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+.+|..                                                                        
T Consensus       228 ~~~~~~~~------------------------------------------------------------------------  235 (312)
T 4ery_A          228 KTYTGHKN------------------------------------------------------------------------  235 (312)
T ss_dssp             EEECSSCC------------------------------------------------------------------------
T ss_pred             EEEEecCC------------------------------------------------------------------------
Confidence            11111000                                                                        


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (312)
T 4ery_A          236 --------------------------------------------------------------------------------  235 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  896 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~  896 (1120)
                        ....+......+++.++++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++  .|+.|++|+..
T Consensus       236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred             --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence              001111222335778899988 89999999999999999999999999999999 899999987  69999999854

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=3e-34  Score=370.48  Aligned_cols=526  Identities=11%  Similarity=0.055  Sum_probs=369.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +...+.+.+|||+  + |+..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            4567899999964  4 555554 799999998876543                    667999999999999999999


Q ss_pred             EEECC------CeEEEEEccCCceeeeeeeecccccCe-------EEEEEcCCCCceEEEEecCC------CcEEEEECC
Q 001224          443 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT  503 (1120)
Q Consensus       443 s~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~s~d------~~i~vwd~~  503 (1120)
                      +++.+      ..|.+|++.+++..    .+..|...+       .+++|+|||+  ++++++.+      ..|++||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88654      37999999988632    477888888       9999999998  67777754      458888887


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEec------------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  571 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  571 (1120)
                      ++.... +..+.  ...++|++   | ++++++.            +...++|.....+....+..+...+..+      
T Consensus       143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~------  209 (1045)
T 1k32_A          143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP------  209 (1045)
T ss_dssp             GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE------
T ss_pred             CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce------
Confidence            776543 33332  23456654   5 7888753            2345566433323333334444444444      


Q ss_pred             CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001224          572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  650 (1120)
                                     .|+++ ..+++++.++.+.+|.+.. +.....+..+.   .+...+|+|||++|+.+. ++.|++
T Consensus       210 ---------------~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~  269 (1045)
T 1k32_A          210 ---------------VIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI  269 (1045)
T ss_dssp             ---------------EEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred             ---------------EEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence                           44444 3466777889999998653 44445554433   366789999999998874 889999


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      |++... .. ..+.++...                                                             
T Consensus       270 ~d~~~~-~l-~~l~~~~~~-------------------------------------------------------------  286 (1045)
T 1k32_A          270 FNPDTE-KI-EKIEIGDLE-------------------------------------------------------------  286 (1045)
T ss_dssp             ECTTTC-CE-EECCCCCCC-------------------------------------------------------------
T ss_pred             ecCCce-Ee-eeeccCccc-------------------------------------------------------------
Confidence            987322 11 111110000                                                             


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEc-CCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  809 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~  809 (1120)
                                   .....     ..+...+.+++|+ |+|+.+++++ ++.+.+|+..                      
T Consensus       287 -------------~~~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----------------------  325 (1045)
T 1k32_A          287 -------------SPEDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----------------------  325 (1045)
T ss_dssp             -------------BCCSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred             -------------ccccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence                         00000     1145567889999 9999888877 6788887652                      


Q ss_pred             CCCcccccCCCCCCCC-CccEEEEccCCCEEEEEe-CCcEE-EEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC
Q 001224          810 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  886 (1120)
Q Consensus       810 ~g~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~s-dg~i~-vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  886 (1120)
                      ++....  +.  .+.. .+..++|+ ||+.+++++ ++.+. +|++.+++.. .+.+|...+..++|+| |+++||+++.
T Consensus       326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~  398 (1045)
T 1k32_A          326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND  398 (1045)
T ss_dssp             SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred             CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence            222211  11  1555 78899999 999999988 57788 8899876654 3447888899999999 9999999999


Q ss_pred             CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC----------CEEEEECCCcccccceeeeccCCCCC
Q 001224          887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      ++.|++||+.+++....+.+|...|.+++|||||++|++++.++          .|++||+.+++.      .....+. 
T Consensus       399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~-  471 (1045)
T 1k32_A          399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN-  471 (1045)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred             CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence            99999999999988888878999999999999999999887654          899999988541      2222222 


Q ss_pred             CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee-----------------------------------------eec
Q 001224          957 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-----------------------------------------VKQ  994 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~-----------------------------------------~~~  994 (1120)
                        ..+..++|+|||++|+.+ .++...+|+......                                         .+.
T Consensus       472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~  549 (1045)
T 1k32_A          472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS  549 (1045)
T ss_dssp             --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred             --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence              256789999999999884 555555555332211                                         011


Q ss_pred             cccCCCCCCeeEEEECCCCcEEEE-------------EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224          995 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus       995 ~~~~~h~~~v~~l~~s~dg~~l~s-------------~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
                      .....|.+.+..++|+|||+++++             ...+..|++||+.+++.....       .+     +.  +++|
T Consensus       550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~  615 (1045)
T 1k32_A          550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL  615 (1045)
T ss_dssp             EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred             EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence            112246678999999999998875             123457899999988764322       11     33  7899


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +| ||++|++++.| .+++|++.+++
T Consensus       616 S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          616 SA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            99 79999998866 89999998876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.2e-35  Score=334.61  Aligned_cols=275  Identities=14%  Similarity=0.238  Sum_probs=206.2

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .+...++|.+.|+|++|||||++ ||+|+ +++++||++.+++.+.......... .............+...|.+++|+
T Consensus        56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence            34556689999999999999995 88876 6899999999998765321100000 000000001112344569999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      |||++||+|+.|+.|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.++++...+. +.
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~  206 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE  206 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence            999999999999999999999987655   6889999999999999999  79999999999999999999988887 56


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      ..+.+++|++ .++.+|++|+.|+.|++||+.+......+....             ....+ +...+.+++|+|++++|
T Consensus       207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEE
Confidence            7799999865 256899999999999999998766544432100             00011 12355566666666789


Q ss_pred             EEEeCCCeEEEEECCCCc------------eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          596 LAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ++++.||.|++||+.+..            +...+.+|  ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999997642            34455544  447999999999999999999999999998776

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.9e-35  Score=331.45  Aligned_cols=320  Identities=12%  Similarity=0.160  Sum_probs=258.6

Q ss_pred             CCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      |.++|.+++|||||++++++..++.+.+|........   ....+|...|.+++|+|+++  ++++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---EEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc---ceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence            5568999999999999999988887777755443222   23457999999999999999  788888 99999999987


Q ss_pred             Cce---eEEee--ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          505 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       505 ~~~---~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      +..   +..+.  +|...|.+++|++  ++.+|++++.||.|++||+.+.+.  ...+..+...+.+             
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~-------------  146 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA-------------  146 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEE-------------
T ss_pred             CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEE-------------
Confidence            753   33443  7899999999865  557999999999999999987652  3334444444444             


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  657 (1120)
                              ++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++++++++.||.|++||+.++.
T Consensus       147 --------~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          147 --------LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             --------EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             --------EEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence                    4555555689999999999999999999988887654  479999999999999999999999999986541


Q ss_pred             hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeec
Q 001224          658 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  737 (1120)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~  737 (1120)
                       ....                                                                           
T Consensus       217 -~~~~---------------------------------------------------------------------------  220 (337)
T 1gxr_A          217 -QLQQ---------------------------------------------------------------------------  220 (337)
T ss_dssp             -EEEE---------------------------------------------------------------------------
T ss_pred             -eEee---------------------------------------------------------------------------
Confidence             0000                                                                           


Q ss_pred             ccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccccc
Q 001224          738 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  817 (1120)
Q Consensus       738 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~  817 (1120)
                                                                    .                                 
T Consensus       221 ----------------------------------------------~---------------------------------  221 (337)
T 1gxr_A          221 ----------------------------------------------H---------------------------------  221 (337)
T ss_dssp             ----------------------------------------------E---------------------------------
T ss_pred             ----------------------------------------------e---------------------------------
Confidence                                                          0                                 


Q ss_pred             CCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          818 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       818 ~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                          .+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus       222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence                0344567788888888888887 78899999887665 45677899999999999 89999999999999999999


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      +++.+.. ..|...|++++|+|++++|++++.||.|++|++
T Consensus       296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9887744 458899999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.2e-35  Score=340.93  Aligned_cols=346  Identities=12%  Similarity=0.097  Sum_probs=259.5

Q ss_pred             CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc
Q 001224          427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  506 (1120)
Q Consensus       427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~  506 (1120)
                      ..+++++|+|+|++|++|+.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence            346689999999999999999999999999876543   34555 4455668899999  79999999999999999999


Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      ....+.+|...|.+++|++  ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++.              
T Consensus       131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------  194 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR--------------  194 (420)
T ss_dssp             EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred             eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence            9999899999999999965  457999999999999999999888888877777777777766664              


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224          587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                             +|++++.||.|++||+.+++.+..+..+. +...+.+++|.+++...          ++.....         
T Consensus       195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~---------  248 (420)
T 3vl1_A          195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS---------  248 (420)
T ss_dssp             -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC---------
T ss_pred             -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC---------
Confidence                   79999999999999999999998887542 23355666665433211          0000011         


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224          666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  745 (1120)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  745 (1120)
                      .                                                                               
T Consensus       249 ~-------------------------------------------------------------------------------  249 (420)
T 3vl1_A          249 K-------------------------------------------------------------------------------  249 (420)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224          746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  825 (1120)
Q Consensus       746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  825 (1120)
                                    +.+++|+|+++.+++++.||.|++||+..                      +........  .|..
T Consensus       250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~  291 (420)
T 3vl1_A          250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC  291 (420)
T ss_dssp             --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred             --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence                          00112334444444444444444444321                      111111111  2677


Q ss_pred             CccEEEEccCCC-EEEEEe-CCcEEEEEcCCCce-eeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---
Q 001224          826 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---  898 (1120)
Q Consensus       826 ~v~~l~~s~d~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---  898 (1120)
                      .|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++|+.||.|++|++...   
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence            899999999998 899988 89999999988754 666665 5667888855 5 6789999999999999999863   


Q ss_pred             ------eeeEeecccccceEEEEEccCCC---EEEEEeCCCCEEEEECCC
Q 001224          899 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       899 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~iWd~~~  939 (1120)
                            .....+.+|.+.|.+++|+|++.   .|++++.+|.+.+|+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                  22334667899999999999999   788888899999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4e-34  Score=320.91  Aligned_cols=252  Identities=18%  Similarity=0.280  Sum_probs=198.8

Q ss_pred             eccCCCCceEEEE-----ec-CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          360 TLNQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       360 ~~~h~~~v~~v~~-----sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      +.+|.+.|++++|     +| |++ +|++|+.|++|+|||+.+++....            .......+.+|...|.+++
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~   83 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA   83 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred             eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence            4469999999999     77 888 699999999999999976542110            0001124789999999999


Q ss_pred             EcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-
Q 001224          434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-  512 (1120)
Q Consensus       434 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-  512 (1120)
                      |+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.. ....... 
T Consensus        84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~~~~  157 (343)
T 2xzm_R           84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFSSAE  157 (343)
T ss_dssp             ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEECCT
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceeeeec
Confidence            99999999999999999999999988665   6889999999999999999  799999999999999874 4444443 


Q ss_pred             --ccccCeEEEeeccCCC--------ceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          513 --GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       513 --~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                        +|...|.+++|++...        +.++++++.||.|++||.. ......+..|...|.+++|+|+            
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~------------  224 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPN------------  224 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTT------------
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCC------------
Confidence              7889999999976532        2689999999999999943 3334445555555555555554            


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          583 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                               +++|++++.||.|++||+. .......+.. .  ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus       225 ---------g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          225 ---------GKYIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             ---------SSEEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             ---------CCEEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence                     4589999999999999994 4445555542 2  259999999999988765 5788999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.7e-34  Score=337.86  Aligned_cols=342  Identities=17%  Similarity=0.293  Sum_probs=264.4

Q ss_pred             cccCCCCce-EEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          421 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       421 ~l~~h~~~V-~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      .+.+|...| .++.|  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++++   ++++|+.||+|++
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v  187 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence            477898875 65555  67899999999999999999998665   688999999999999987   4999999999999


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-eEEecc
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF  578 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~~  578 (1120)
                      ||+.+++++..+.+|...|.+++|.+.+++.++++++.||.|++||+.............. ...+...+++. ......
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence            9999999999999999999999998878889999999999999999987665433222211 11122222221 111111


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcch
Q 001224          579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                      ........+++++++++++++.||.|++||+.+++.+..+..+.  ..|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~  343 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  343 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence            11122334457788999999999999999999999999987664  47999999999999999999999999998665 1


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      ....+                                                                           
T Consensus       344 ~~~~~---------------------------------------------------------------------------  348 (464)
T 3v7d_B          344 LMYTL---------------------------------------------------------------------------  348 (464)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             EEEEE---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                                                                                                      
T Consensus       349 --------------------------------------------------------------------------------  348 (464)
T 3v7d_B          349 --------------------------------------------------------------------------------  348 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                        .+|...|.+++++  ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus       349 --~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          349 --QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             --CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred             --eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence              0155666677775  46777777 7888888888776655554 566788899999 899999998 89999999999


Q ss_pred             ceeeEe-ecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          898 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       898 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ++.+.. +.+|...|++++|+ ++.++++++.||.+.+|-+
T Consensus       422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence            998876 67899999999997 4455566677776665543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=321.94  Aligned_cols=254  Identities=17%  Similarity=0.236  Sum_probs=196.6

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccc-ccCCCCceEEEEEcCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL-VKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~spd  437 (1120)
                      .+.+|.+.|++++|+|+   +||+|+.|++|+|||+.++.......                + ..+|...|.+++|+|+
T Consensus         9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~----------------~~~~~h~~~v~~v~~sp~   69 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV----------------LDETAHKKAIRSVAWRPH   69 (330)
T ss_dssp             EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE----------------ECTTCCCSCEEEEEECTT
T ss_pred             eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE----------------EecCCccCCEEEEEECCC
Confidence            34469999999999998   69999999999999998753211000                1 2349999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCc----eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC----CceeE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQY  509 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~----~~~~~  509 (1120)
                      +++||+|+.|++|+|||+....    .......+.+|.+.|.+++|+|+++  +|++|+.|++|++||+..    .+++.
T Consensus        70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            9999999999999999996432    1223446889999999999999999  799999999999999943    25678


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC--CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      .+.+|...|.+++|+++  +.+|++++.|++|++||....  .....+..|...|.+++|+|++.               
T Consensus       148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------  210 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG---------------  210 (330)
T ss_dssp             EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred             EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence            89999999999999764  579999999999999998764  34556666766666666666521               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCC--------ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                          +..|++++.|++|++||+.++        .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus       211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence                347999999999999998764        23333332 234579999999765 8899999999999997654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.3e-34  Score=333.77  Aligned_cols=317  Identities=20%  Similarity=0.323  Sum_probs=267.8

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.||+|++|
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW  184 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence            46789887543 355679999999999999999999988665   688999999999998  44  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      |+.+++++..+.+|...|.+++++    +..+++|+.||.|++||+.+.+....+..|...+.++.+  ++         
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~---------  249 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG---------  249 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence            999999999999999999999984    257999999999999999988877777777777776666  33         


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                                  +++++++.||.|++||+.+++.+..+..+.  ..+.+++|  ++.++++++.||.|++||+.++ +..
T Consensus       250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~  312 (445)
T 2ovr_B          250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI  312 (445)
T ss_dssp             ------------SCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             ------------CEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence                        469999999999999999999999887654  47888888  8899999999999999998665 111


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+.                                                                            
T Consensus       313 ~~~~----------------------------------------------------------------------------  316 (445)
T 2ovr_B          313 HTLT----------------------------------------------------------------------------  316 (445)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (445)
T 2ovr_B          317 --------------------------------------------------------------------------------  316 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                       +|...+.++.+  +++++++++ ||.|++||+.+++.+..+..   |...|++++|++   ++|++|+.||.|++||+.
T Consensus       317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred             -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence             03444555554  456888888 89999999999998888876   788899999964   699999999999999999


Q ss_pred             cceeeEee-----cccccceEEEEEccCCCEEEEEeCCCC----EEEEECCC
Q 001224          897 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  939 (1120)
Q Consensus       897 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----v~iWd~~~  939 (1120)
                      +++.+..+     .+|.+.|++++|+|++.+|++|+.||+    |.|||++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99988888     578899999999999999999999998    99999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=322.03  Aligned_cols=292  Identities=13%  Similarity=0.166  Sum_probs=225.8

Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      .+|...|.+++|+++  .|++++.|+.|++|++.....                    .... .+...+|...|.+++|+
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s   67 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR   67 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence            358899999999988  899999999999999743210                    0110 01112388999999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCC-------CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----ceee
Q 001224          834 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK  901 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~  901 (1120)
                      |++++|++++ |++|++||+..       .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+..    .+++
T Consensus        68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~  146 (330)
T 2hes_X           68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI  146 (330)
T ss_dssp             TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence            9999999999 99999999853       355677899999999999999 899999999999999999943    3567


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC--CcEEEE-EeC
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE  978 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd--g~~la~-~~d  978 (1120)
                      ..+.+|...|++++|+|++.+|++++.|++|++||+.++.   ..++....+|..   .|.+++|+|+  +.+|++ +.|
T Consensus       147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEG---TVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSS---CEEEEEECCSSSSCEEEEEETT
T ss_pred             EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCC---cEEEEEecCCCCeeEEEEEeCC
Confidence            8899999999999999999999999999999999987642   234556667764   8999999998  778888 589


Q ss_pred             CeEEEEEcCCc--------eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce--eeeeCCCcccCCC
Q 001224          979 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1048 (1120)
Q Consensus       979 ~~v~i~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~~~~~~~g 1048 (1120)
                      +.|++||+.++        .+...+. ..|...|.+++|++++ +|++++.||.|+|||..+++.  .....      .+
T Consensus       221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~  292 (330)
T 2hes_X          221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC  292 (330)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred             CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence            99999999765        3333332 2489999999999765 899999999999999988743  22221      23


Q ss_pred             CCCCCccceEEEecCC-CCCEEEEEeCCCcEEEEecCC
Q 001224         1049 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1049 ~~~~~v~~~~i~~~p~-d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      |....+.  +++|+|. ++++|++|+.||+|++|++.+
T Consensus       293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3332355  8999985 578999999999999999865

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-36  Score=349.37  Aligned_cols=348  Identities=11%  Similarity=0.125  Sum_probs=251.8

Q ss_pred             ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccC---CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      ..+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +...+....+ +|.+.|.+++|+|+++  +|++|+.|+.|
T Consensus        59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i  135 (437)
T 3gre_A           59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI  135 (437)
T ss_dssp             CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence            378999999999999 999999999999999999987   5433222233 5999999999999999  79999999999


Q ss_pred             EEEECC---CCceeEEeec------------cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCC
Q 001224          498 KVWDAT---NGAKQYIFEG------------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGR  560 (1120)
Q Consensus       498 ~vwd~~---~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~  560 (1120)
                      ++||+.   +++.+..+.+            +...+.++.+...+++.+|++++.||.|++||+++.+....+..  |..
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence            999994   6666554443            34455666655567789999999999999999998777766665  445


Q ss_pred             ceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc----CCC
Q 001224          561 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDG  636 (1120)
Q Consensus       561 ~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~  636 (1120)
                      .|.+++|+|                     ++++|++++.||.|++||+++++++..+... +...|.+++|+    +++
T Consensus       216 ~v~~~~~s~---------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~  273 (437)
T 3gre_A          216 AVSSICIDE---------------------ECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNS  273 (437)
T ss_dssp             CEEEEEECT---------------------TSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTE
T ss_pred             ceEEEEECC---------------------CCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCc
Confidence            555555555                     4458999999999999999999998888632 22368899555    568


Q ss_pred             CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccc
Q 001224          637 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  716 (1120)
Q Consensus       637 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (1120)
                      .+|++++.||.|++||+.++ +....+.++...                                               
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~-----------------------------------------------  305 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQ-----------------------------------------------  305 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTT-EEEEEEESSSSC-----------------------------------------------
T ss_pred             cEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCC-----------------------------------------------
Confidence            89999999999999999877 444444433221                                               


Q ss_pred             cCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCc
Q 001224          717 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  796 (1120)
Q Consensus       717 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~  796 (1120)
                                                                 +..+.|+|++..+    .+.                 
T Consensus       306 -------------------------------------------~~~~~~~~~~~~l----~~~-----------------  321 (437)
T 3gre_A          306 -------------------------------------------PSMEHFLPIEKGL----EEL-----------------  321 (437)
T ss_dssp             -------------------------------------------CCGGGGSCBCSSG----GGC-----------------
T ss_pred             -------------------------------------------Cccceeccccccc----ccc-----------------
Confidence                                                       1111222222211    000                 


Q ss_pred             cccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCC---CeEEEE
Q 001224          797 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLA  872 (1120)
Q Consensus       797 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~  872 (1120)
                                          .+.+..|...|.+++|+ ++++|++++ |+.|++||+.+++....+.+|..   .+....
T Consensus       322 --------------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  380 (437)
T 3gre_A          322 --------------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ  380 (437)
T ss_dssp             --------------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred             --------------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence                                01111277889999999 788999998 99999999999999888887643   456666


Q ss_pred             EecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEE
Q 001224          873 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       873 ~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd  936 (1120)
                      +++ ...+++..        |+...+.....+..|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       381 ~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          381 VTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            766 55554443        333344445666789999999999988  78999999999999995

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-34  Score=318.57  Aligned_cols=211  Identities=20%  Similarity=0.299  Sum_probs=178.1

Q ss_pred             cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCcee--eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      +|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence            48899999999999997 689999999999999999876432  23456889999999999999999  79999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-eeeeCCCCceeEEEEcCCCCeEEe
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      ++|+...+........+...+..+.+.+  ++.+|++++.|+.+++||....... .....+...+..+++++++.    
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  184 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS----  184 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred             eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence            9999999999988888888888887754  4578999999999999998764332 23345566666666666543    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                     ...+++++.|+.|++||+.+++.+..+..|.  ..|.+++|+|++++|++|+.||.|++||+.+.
T Consensus       185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                           2467889999999999999999999887664  47999999999999999999999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-34  Score=319.98  Aligned_cols=307  Identities=18%  Similarity=0.259  Sum_probs=247.6

Q ss_pred             eeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          357 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       357 ~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      +..++ +|.+.|++|+|+|++..+|++|+.||+|+|||+.+++.......              ..+.+|...|.+++|+
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~--------------~~l~~h~~~V~~~~~s   95 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------------RALRGHSHFVSDVVIS   95 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE--------------EEECCCSSCEEEEEEC
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee--------------EEEeCCCCCEEEEEEC
Confidence            34444 59999999999998544799999999999999987654322111              2478999999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee-EEeecc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH  514 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~h  514 (1120)
                      |+|++|++|+.|+.|++|+........   ....+...+..+.+++++.  ++++++.|+.+++||+...... ....+|
T Consensus        96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            999999999999999999999887554   4567888999999999999  6999999999999998766544 445789


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      ...+..++|.+.....++++++.|+.|++||+.+......+..|...|.+++|+|++                     ++
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~  229 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SL  229 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CE
Confidence            999999999888777889999999999999999887777777777766666666665                     48


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccC
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  674 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  674 (1120)
                      |++++.||.|++||+.+.+.+..+..+.   .+.+++|+|++.+++ ++.|+.|++||+.++ .....+.....      
T Consensus       230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~------  298 (340)
T 4aow_A          230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVI------  298 (340)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred             EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEeccccce------
Confidence            9999999999999999999998887553   589999999887655 556899999998765 22222211000      


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224          675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  754 (1120)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  754 (1120)
                                                                                                 .....
T Consensus       299 ---------------------------------------------------------------------------~~~~~  303 (340)
T 4aow_A          299 ---------------------------------------------------------------------------STSSK  303 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------eeecc
Confidence                                                                                       00002


Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  789 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~  789 (1120)
                      +|...|.+++|+|+|++|++++.||.|++|++.++
T Consensus       304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            37789999999999999999999999999998543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.2e-33  Score=362.35  Aligned_cols=490  Identities=13%  Similarity=0.065  Sum_probs=352.9

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeC------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCc
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  428 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  428 (1120)
                      .....+..|...|.+++|||||++ ||.++.      +..|.+||+.+++..                    .+..|...
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~  101 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK  101 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred             CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence            345566679999999999999997 554433      237999999887643                    26778888


Q ss_pred             e-------EEEEEcCCCCeEEEEECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--
Q 001224          429 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--  493 (1120)
Q Consensus       429 V-------~~l~~spdg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--  493 (1120)
                      +       .+++|||||+++++++.+      ..|.+|++.+++...    +..+  ....++|+| |   ++++++.  
T Consensus       102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~  171 (1045)
T 1k32_A          102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF  171 (1045)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred             ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence            8       999999999977777754      358888888876432    3333  245677999 6   3666542  


Q ss_pred             ----------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCCce
Q 001224          494 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWC  562 (1120)
Q Consensus       494 ----------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v  562 (1120)
                                +...++|....+.....+.+|...+.++.|+++   .++++++.|+.+++|.++... ....+..+. .+
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~  247 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY  247 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence                      345677764444555666899999999998643   577788888999999876422 223332222 22


Q ss_pred             eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC---------CCCCcCeEEEc
Q 001224          563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN  633 (1120)
Q Consensus       563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s  633 (1120)
                      ...                     +|+|+|+.++.+ .++.|++||+... .+..+..+.         +...+.+++|+
T Consensus       248 ~~~---------------------~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S  304 (1045)
T 1k32_A          248 YPR---------------------HLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFS  304 (1045)
T ss_dssp             CEE---------------------EEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred             cee---------------------eEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeec
Confidence            333                     445555567666 4899999999544 344544321         11258899999


Q ss_pred             -CCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC
Q 001224          634 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG  712 (1120)
Q Consensus       634 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1120)
                       |||++|++++ ++.+.+|+..++. ... +                                                 
T Consensus       305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~-------------------------------------------------  332 (1045)
T 1k32_A          305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-V-------------------------------------------------  332 (1045)
T ss_dssp             ECGGGCEEEEE-TTEEEEECTTSSB-EEE-C-------------------------------------------------
T ss_pred             CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-c-------------------------------------------------
Confidence             9999999888 7889999876541 000 0                                                 


Q ss_pred             cccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc-cEEEEEEcCCCceEEEeccCceEE-Eeeecccc
Q 001224          713 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE  790 (1120)
Q Consensus       713 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-vw~~~~~~  790 (1120)
                                                               ..+.. .+..++|+ +|+.++.++.++.+. +|++    
T Consensus       333 -----------------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~----  366 (1045)
T 1k32_A          333 -----------------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY----  366 (1045)
T ss_dssp             -----------------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET----
T ss_pred             -----------------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC----
Confidence                                                     01333 67788999 999888888776666 6665    


Q ss_pred             cCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE
Q 001224          791 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  869 (1120)
Q Consensus       791 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~  869 (1120)
                                        .++....  +.  ++...+.+++|+|||++|++++ ++.|++||+.+++....+..|...+.
T Consensus       367 ------------------~~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          367 ------------------RTGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             ------------------TTCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             ------------------CCCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                              2332222  11  2677899999999999999988 78999999999988877778888999


Q ss_pred             EEEEecCCCcEEEEEeCCC----------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          870 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       870 ~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      +++|+| |+++|++++.++          .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887654          89999999887 677888988999999999999999999988888887543


Q ss_pred             cccccc---ee-----------------------------------eeccCCCCCCCCCCcEEEEccCCcEEEE------
Q 001224          940 WEKQKN---RF-----------------------------------LQIPTGRTPTAQSDTRVQFHQDQIHFLV------  975 (1120)
Q Consensus       940 ~~~~~~---~~-----------------------------------~~~~~~~~~~~~~i~~~~fspdg~~la~------  975 (1120)
                      ......   ..                                   +.....+   ...+..++|+|||+++++      
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~---~~~~~~~~~s~dg~~~~~~~~~g~  579 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD---PGDYRMIIPLESSILIYSVPVHGE  579 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC---CBCEEEEEECSSEEEEEECCCCCS
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC---CCChhheEEcCCCeEEEEecccCc
Confidence            221000   00                                   0001111   145778999999997875      


Q ss_pred             ------E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          976 ------V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       976 ------~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                            +  ....+.+||+.+++.....      ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       580 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          580 FAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             ccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence                  1  2457889999888754332      468899999999999999866 89999998887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-33  Score=327.93  Aligned_cols=320  Identities=15%  Similarity=0.277  Sum_probs=264.7

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      .+.+|.+.|.. +++++|+ ++++|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+  +
T Consensus       113 ~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--~  169 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--D  169 (445)
T ss_dssp             EEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--T
T ss_pred             EecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--C
Confidence            34568877543 3556688 599999999999999999987763                   77899999999998  6


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      ++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|+.|++||+.+++++..+.+|...|
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v  242 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV  242 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence            799999999999999999988665   688999999999996  45  69999999999999999999999999999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .++++    ++.++++++.||.|++||+.+......+..|...+.++.+  +                     +.+++++
T Consensus       243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~---------------------~~~l~~~  295 (445)
T 2ovr_B          243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D---------------------GIHVVSG  295 (445)
T ss_dssp             EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C---------------------SSEEEEE
T ss_pred             EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C---------------------CCEEEEE
Confidence            99987    3468999999999999999988777777777766666665  3                     3579999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      +.||.|++||+.+++.+..+..+..  .+.++.+  +++++++++.||.|++||+.++ +....+.+             
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~-------------  357 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQG-------------  357 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECS-------------
T ss_pred             eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEcc-------------
Confidence            9999999999999999998876543  5655655  5779999999999999998665 11111100             


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                                                      
T Consensus       358 --------------------------------------------------------------------------------  357 (445)
T 2ovr_B          358 --------------------------------------------------------------------------------  357 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                                                                                   ...|...|.+++++  +++
T Consensus       358 -------------------------------------------------------------~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          358 -------------------------------------------------------------PNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             -------------------------------------------------------------TTSCSSCEEEEEEC--SSE
T ss_pred             -------------------------------------------------------------CCCCCCCEEEEEEC--CCE
Confidence                                                                         00156667778774  578


Q ss_pred             EEEEe-CCcEEEEEcCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEeec
Q 001224          839 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV  897 (1120)
Q Consensus       839 l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~  897 (1120)
                      +++++ ||.|++||+.+++.+..+     .+|...|.+++|+| ++.++|+|+.||.    |.|||+..
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence            88888 899999999998888877     46788899999999 9999999999998    99999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.7e-33  Score=328.19  Aligned_cols=320  Identities=15%  Similarity=0.247  Sum_probs=263.6

Q ss_pred             eeeccCCCCc-eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          358 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       358 ~~~~~h~~~v-~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ..+.+|...| +|+.|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~  172 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH  172 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred             EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence            3455687775 66666  455 699999999999999999987763                   778999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCce-------
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------  507 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~-------  507 (1120)
                      ++ +|++|+.||+|++||+++++.+.   .+.+|.+.|.+++|++  ++.  ++++|+.|+.|++||+.++..       
T Consensus       173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred             CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence            88 99999999999999999988665   6889999999999995  556  799999999999999987753       


Q ss_pred             ----------------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224          508 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  571 (1120)
Q Consensus       508 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  571 (1120)
                                      +..+.+|...|.++.    +++.++++++.||.|++||+.+.+....+..|...+.+++|+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                            556788999998875    334699999999999999999887777777777666666666655


Q ss_pred             CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001224          572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  651 (1120)
Q Consensus       572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  651 (1120)
                                           +++++++.||.|++||+.+++.+..+..|.  ..|.+++|+  +.++++++.||.|++|
T Consensus       323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence                                 489999999999999999999999998664  478889987  5899999999999999


Q ss_pred             EccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCc
Q 001224          652 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  731 (1120)
Q Consensus       652 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  731 (1120)
                      |+.++...                                                                        
T Consensus       378 d~~~~~~~------------------------------------------------------------------------  385 (464)
T 3v7d_B          378 DANDYSRK------------------------------------------------------------------------  385 (464)
T ss_dssp             ETTTCCEE------------------------------------------------------------------------
T ss_pred             ECCCCcee------------------------------------------------------------------------
Confidence            98654100                                                                        


Q ss_pred             ceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCC
Q 001224          732 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  811 (1120)
Q Consensus       732 i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g  811 (1120)
                                                               ...                                    
T Consensus       386 -----------------------------------------~~~------------------------------------  388 (464)
T 3v7d_B          386 -----------------------------------------FSY------------------------------------  388 (464)
T ss_dssp             -----------------------------------------EEE------------------------------------
T ss_pred             -----------------------------------------eee------------------------------------
Confidence                                                     000                                    


Q ss_pred             CcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcE
Q 001224          812 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  890 (1120)
Q Consensus       812 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v  890 (1120)
                                .+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+  ++.++++++.||.+
T Consensus       389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS  456 (464)
T ss_dssp             ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred             ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence                      034456678899999999999999999999999999876 67788899999997  46777778888877


Q ss_pred             EEEEe
Q 001224          891 QIYNV  895 (1120)
Q Consensus       891 ~vwd~  895 (1120)
                      .+|-+
T Consensus       457 ~i~~l  461 (464)
T 3v7d_B          457 FLEIL  461 (464)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=343.74  Aligned_cols=386  Identities=14%  Similarity=0.196  Sum_probs=282.0

Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee-cccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCC---Cc-
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA-  506 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~---~~-  506 (1120)
                      .|+|+++.+++++      .|+.. ++.+.   .+ .+|.+.|++++|+| +++  +|++|+.||+|++||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence            4678888888765      37744 44343   56 88999999999999 998  799999999999999876   43 


Q ss_pred             --eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC---CCCCceeeeCCCCceeEEEEcCCCCeEEeccccc
Q 001224          507 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  581 (1120)
Q Consensus       507 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~  581 (1120)
                        ....+ +|...|.+++|++  ++.+|++++.||.|++||+.   .+........+  .+..+.+++++       ...
T Consensus       102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~  169 (437)
T 3gre_A          102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE  169 (437)
T ss_dssp             CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred             cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence              23344 4999999999975  55799999999999999995   44444444333  67777777743       122


Q ss_pred             ceeEEE--EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224          582 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  659 (1120)
Q Consensus       582 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  659 (1120)
                      .+.++.  +++++.++++++.||.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ ..
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~  248 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL  248 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence            455555  678899999999999999999999999999987434458999999999999999999999999998765 11


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                      +..+.                                                                        +  
T Consensus       249 ~~~~~------------------------------------------------------------------------~--  254 (437)
T 3gre_A          249 IRSWS------------------------------------------------------------------------F--  254 (437)
T ss_dssp             EEEEB------------------------------------------------------------------------C--
T ss_pred             EEEEe------------------------------------------------------------------------c--
Confidence            11110                                                                        0  


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                     .|...|.+++++|                                                    
T Consensus       255 ---------------~~~~~v~~~~~~~----------------------------------------------------  267 (437)
T 3gre_A          255 ---------------GDHAPITHVEVCQ----------------------------------------------------  267 (437)
T ss_dssp             ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred             ---------------CCCCceEEEEecc----------------------------------------------------
Confidence                           0222333333322                                                    


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                                 +|++++.+|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+    .+.          
T Consensus       268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~----------  321 (437)
T 3gre_A          268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL----------  321 (437)
T ss_dssp             -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred             -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence                       2345677899988 89999999999999999999999999999999 65544    111          


Q ss_pred             eeeEeecc--cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          899 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       899 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                          .+.+  |...|++++|+ ++++|++|+.|+.|++||+.+++..     ....++......+....++++..+++..
T Consensus       322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (437)
T 3gre_A          322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK  391 (437)
T ss_dssp             ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred             ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence                1445  99999999999 8899999999999999999987643     2223332222345566666666555443


Q ss_pred             eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC--CcEEEEEEcCCcEEEEE
Q 001224          977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~iwd 1029 (1120)
                             |+..........  ..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                   222233333322  368999999999998  88999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-35  Score=342.71  Aligned_cols=244  Identities=9%  Similarity=0.099  Sum_probs=183.7

Q ss_pred             EecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC------CCeEEEEE
Q 001224          372 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD------GSLFGVAY  445 (1120)
Q Consensus       372 ~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~  445 (1120)
                      .+|+++ ++++|+.|++|+|||+.+++.....               ...+.+|.+.|.+++|+|+      +.+||+|+
T Consensus       169 ~~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s  232 (524)
T 2j04_B          169 LNEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS  232 (524)
T ss_dssp             --------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred             cchhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence            589999 5899999999999999887643210               0125568889999999997      67999999


Q ss_pred             CCCeEEEEEccCCcee--------eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc-eeEEeecccc
Q 001224          446 SRHIVQIYSYHGGDEV--------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA  516 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~-~~~~~~~h~~  516 (1120)
                      .||+|+|||+.++...        .....+.+|...|++++|++++   .|++|+.||+|++||+.++. +...+.+|..
T Consensus       233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~  309 (524)
T 2j04_B          233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS  309 (524)
T ss_dssp             TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred             cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence            9999999999876422        1234678999999999999864   59999999999999999774 4567899999


Q ss_pred             CeEEEeeccCCCc-eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          517 PVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       517 ~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      .|.++++..++++ .+|++++.|++|++||+++......+..+..                   ...+..++|+|++..+
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------------------~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------------------GSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------------------CCSCCCEEEETTTTEE
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------------------cCcccceEeCCCcCeE
Confidence            9999954335555 7999999999999999987655444433221                   0123445555555689


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      ++++.|++|++||++++.++..+.+|.  ..|.+++|+|+|++|++|+.||+|++||+..
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EEeCCCCcEEEEECcccccceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            999999999999999999888887654  4899999999999999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=318.82  Aligned_cols=302  Identities=16%  Similarity=0.241  Sum_probs=253.8

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++++.|+.|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence            578999999999999999999999999999999999988665   6889999999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC-----CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      |+.+++++..+. |...|.+++|++  ++.++++++.+     +.|++||+........+                    
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------------------  158 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL--------------------  158 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence            999999999988 889999999865  55799999988     99999998764332211                    


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                                          ..            .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus       159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence                                00            0112233333343344689999999999999999999999999865


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      +......                                                                         
T Consensus       207 ~~~~~~~-------------------------------------------------------------------------  213 (369)
T 3zwl_B          207 NYEYVDS-------------------------------------------------------------------------  213 (369)
T ss_dssp             TTEEEEE-------------------------------------------------------------------------
T ss_pred             CcEeEEE-------------------------------------------------------------------------
Confidence            3110000                                                                         


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                                                                      +                               
T Consensus       214 ------------------------------------------------~-------------------------------  214 (369)
T 3zwl_B          214 ------------------------------------------------I-------------------------------  214 (369)
T ss_dssp             ------------------------------------------------E-------------------------------
T ss_pred             ------------------------------------------------E-------------------------------
Confidence                                                            0                               


Q ss_pred             ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001224          816 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  888 (1120)
Q Consensus       816 ~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------  888 (1120)
                           ..|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++      
T Consensus       215 -----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          215 -----DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             -----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred             -----ecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence                 01566788888999999999888 8999999999988888887 777899999999 899999999888      


Q ss_pred             --------cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcc
Q 001224          889 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  941 (1120)
Q Consensus       889 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~  941 (1120)
                              .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|+++.+.
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                    89999999999999999999999999999999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-33  Score=348.78  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=212.4

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      +.+|.+.|++|+|+|++..+|++|+.||+|+|||+.+.......              ....+.+|...|.+++|+|+|+
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCC
Confidence            44699999999999988668999999999999999765322100              0114789999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe---ecccc
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA  516 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~h~~  516 (1120)
                      +|++|+.||+|+|||+.++..++   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.........   .+|..
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD  518 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred             EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence            99999999999999999987665   6889999999999999999  6999999999999997655443332   46889


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|.+++|+++.....+++++.|++|++||++.......+..|...|.+++|+|+|                     ++|+
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~  577 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA  577 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence            9999999877655789999999999999999877777777777766666666665                     4899


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.||.|++||+.+++.+..+..+   ..+.+++|+|++.++++++ ++.|++||+.++
T Consensus       578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred             EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence            9999999999999999988777643   3589999999999888776 466999999887

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=323.95  Aligned_cols=356  Identities=14%  Similarity=0.159  Sum_probs=248.1

Q ss_pred             CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeee
Q 001224          386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH  464 (1120)
Q Consensus       386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~  464 (1120)
                      ++.++||+++.++...                   ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus        22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   82 (408)
T 4a11_B           22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY   82 (408)
T ss_dssp             HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred             cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence            4567777777665544                   4778999999999999 9999999999999999999988654422


Q ss_pred             ee----------ecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC-CceEE
Q 001224          465 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI  532 (1120)
Q Consensus       465 ~~----------l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l  532 (1120)
                      ..          ..+|...|.+++|+| ++.  ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B           83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred             eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence            11          135999999999999 555  79999999999999999999988887 77889999887643 45699


Q ss_pred             EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001224          533 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV  612 (1120)
Q Consensus       533 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  612 (1120)
                      ++++.||.|++||+.+......+..|...|.+++|+|++.                    ..+++++.||.|++||++++
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence            9999999999999999888888887877777777777765                    25889999999999999877


Q ss_pred             c-eeEEEec-------------CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          613 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       613 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      . .+..+..             ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+...         
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~---------  289 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCN---------  289 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCC---------
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceeccccccc---------
Confidence            6 4444421             23345789999999999999999999999999987621 1110000000         


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                                                   .  
T Consensus       290 -----------------------------------------------------------------------------~--  290 (408)
T 4a11_B          290 -----------------------------------------------------------------------------N--  290 (408)
T ss_dssp             -----------------------------------------------------------------------------C--
T ss_pred             -----------------------------------------------------------------------------c--
Confidence                                                                                         0  


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                                                                                     ..............+.+
T Consensus       291 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          291 ---------------------------------------------------------------SKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             ---------------------------------------------------------------CSSCCCCEECCSSSSCE
T ss_pred             ---------------------------------------------------------------ccccceeEEecCCCceE
Confidence                                                                           00000111112233445


Q ss_pred             EEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEcc
Q 001224          839 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  918 (1120)
Q Consensus       839 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~  918 (1120)
                      ++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+...   ..+.+
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~  383 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP  383 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence            5555599999999999999999999999999999999 8999999999999999999998877655443322   23333


Q ss_pred             -CCCEEEEEeCCCCEEEEECCC
Q 001224          919 -ALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       919 -d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                       +...+.+.+.|+.+++|+...
T Consensus       384 ~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          384 AFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------
T ss_pred             ccceeecccCccCceeecCCcc
Confidence             334556777899999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-34  Score=327.11  Aligned_cols=318  Identities=14%  Similarity=0.193  Sum_probs=222.5

Q ss_pred             cccCCCCceEEEEEcCC----CCeEEEEECCCeEEEEEccCCceeeeeeeec--ccccCeEEEEEcCC----CCceEEEE
Q 001224          421 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT  490 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s  490 (1120)
                      +..+|.++|.+++|+|+    ...+++++.++.|++||+.+++.+.......  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            46689999999999984    5566777777799999999887665443332  26788999999999    55  7999


Q ss_pred             ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEE
Q 001224          491 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY  567 (1120)
Q Consensus       491 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~  567 (1120)
                      |+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+.+.+....+   ..+...      
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  163 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------  163 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence            999999999999999999999999999999999762 4579999999999999999865443332   122222      


Q ss_pred             cCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224          568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  647 (1120)
Q Consensus       568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  647 (1120)
                                                                                 |.+++|+|++++|++++.||.
T Consensus       164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred             -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence                                                                       444555555555555555556


Q ss_pred             EEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeecc
Q 001224          648 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  727 (1120)
Q Consensus       648 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  727 (1120)
                      |++||+.++ +....+....            .+.+.                                   +..+....
T Consensus       185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~  216 (366)
T 3k26_A          185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS  216 (366)
T ss_dssp             EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred             EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence            666655544 2222221100            00100                                   00000000


Q ss_pred             CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224          728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  807 (1120)
Q Consensus       728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~  807 (1120)
                      .......+..                                                                      
T Consensus       217 ~~~~~~~~~~----------------------------------------------------------------------  226 (366)
T 3k26_A          217 QKIHFPDFST----------------------------------------------------------------------  226 (366)
T ss_dssp             EEECCCSEEE----------------------------------------------------------------------
T ss_pred             eeeccCcccc----------------------------------------------------------------------
Confidence            0000000000                                                                      


Q ss_pred             CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCc--------------eeeeecCCCCCeEEEE
Q 001224          808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--------------TMATFMPPPPAATFLA  872 (1120)
Q Consensus       808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~--------------~~~~~~~~~~~i~~l~  872 (1120)
                                .  ..|...|.+++|+  ++++++++ |+.|++||+.++.              .+..+..|...|++++
T Consensus       227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (366)
T 3k26_A          227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR  292 (366)
T ss_dssp             ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred             ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence                      0  0155556666665  44566655 5666666665443              3667778899999999


Q ss_pred             EecCC--CcEEEEEeCCCcEEEEEeecce----eeEeeccc--ccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          873 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       873 ~sp~d--~~~lasg~~dg~v~vwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      |+| +  +++|++|+.||.|++||+.+++    ....+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999 7  9999999999999999999875    34477877  79999999999999999999999999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.2e-33  Score=318.03  Aligned_cols=301  Identities=15%  Similarity=0.199  Sum_probs=243.6

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc------eeEEeeccccCeEEEeeccC--CCc---eE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF  531 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~  531 (1120)
                      ....+.+|.+.|++++|+|  +  +|++|+.||.|++||+.+++      .+..+.+|...|.+++|+++  .++   .+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            3446889999999999998  4  79999999999999999988      78899999999999999764  236   79


Q ss_pred             EEEEecCCeEEEEecCCCCC-----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc----CCCCE-EEEEeCC
Q 001224          532 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD  601 (1120)
Q Consensus       532 l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~----~~~~~-l~~~~~d  601 (1120)
                      |++++.||.|++||+.+...     ...+..+...                .....+.+++|+    |++++ |++++.|
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  147 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK  147 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence            99999999999999988765     4444444100                002345555555    56668 9999999


Q ss_pred             CeEEEEECCC------CceeE-----EEec-----CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccc
Q 001224          602 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       602 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                      |.|++||+.+      ++.+.     .+..     ..+...+.+++|+|++ ++++++.||.|++||+.++ +....+..
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~  225 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES  225 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence            9999999998      76666     6644     3445579999999999 9999999999999998654 11100000


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224          666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  745 (1120)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  745 (1120)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC--
Q 001224          746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP--  823 (1120)
Q Consensus       746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~--  823 (1120)
                                                                                              .  .+|  
T Consensus       226 ------------------------------------------------------------------------~--~~h~~  231 (397)
T 1sq9_A          226 ------------------------------------------------------------------------Q--HSMIN  231 (397)
T ss_dssp             ------------------------------------------------------------------------C--C---C
T ss_pred             ------------------------------------------------------------------------c--ccccc
Confidence                                                                                    0  004  


Q ss_pred             -CCCccEEEEccCCCEEEEEe-C---CcEEEEEcCCCceeeeecC-------------CCCCeEEEEEecCCCcEEEEEe
Q 001224          824 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM  885 (1120)
Q Consensus       824 -~~~v~~l~~s~d~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~  885 (1120)
                       ...|.+++|+|++++|++++ |   +.|++||+.+++.+..+..             |...|.+++|+| ++++|++|+
T Consensus       232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  310 (397)
T 1sq9_A          232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG  310 (397)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred             cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence             66788888888888888887 7   8899999988888888887             899999999999 899999999


Q ss_pred             CCCcEEEEEeecceeeEeec------cc---------------ccceEEEEEccCC----------CEEEEEeCCCCEEE
Q 001224          886 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV  934 (1120)
Q Consensus       886 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~v~i  934 (1120)
                      .||.|++||+.+++.+..+.      +|               ...|++++|+|++          ++|++++.||.|++
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            99999999999999999998      88               9999999999998          79999999999999


Q ss_pred             EECCCc
Q 001224          935 WSSDGW  940 (1120)
Q Consensus       935 Wd~~~~  940 (1120)
                      |++.++
T Consensus       391 w~~~~g  396 (397)
T 1sq9_A          391 FREAGG  396 (397)
T ss_dssp             EEEEC-
T ss_pred             EEcCCC
Confidence            999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.2e-33  Score=326.12  Aligned_cols=241  Identities=15%  Similarity=0.246  Sum_probs=187.5

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  438 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  438 (1120)
                      ...|...|+||+|+|....+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++|+|+| ++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~  177 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT  177 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence            34588999999999966557999999999999999887643311                 2568999999999998 78


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      ++|++|+.||+|+|||++++.. ........+...+.+++|+|+++  +|++|+.||.|++||+. ++.+..+.+|...|
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v  253 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV  253 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred             CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence            9999999999999999987643 32223334455789999999999  79999999999999975 56678889999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      .+++|++..+ .++++++.|+.|++||++.......+   ..|...|.+++|+|+|                     ++|
T Consensus       254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------------------~~l  311 (435)
T 4e54_B          254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------------------ARL  311 (435)
T ss_dssp             EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------------------SEE
T ss_pred             EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------------------Cee
Confidence            9999976543 58899999999999999876544322   3455555555555554                     589


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCC----CCcCeEEEcCCCCEEEEEE
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~  643 (1120)
                      ++++.||.|++||+.++.....+..+...    ..+....|+|++.+++++.
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence            99999999999999999887777654321    1233456677666665553

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-32  Score=339.56  Aligned_cols=211  Identities=18%  Similarity=0.283  Sum_probs=175.4

Q ss_pred             cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCCcee--eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcE
Q 001224          421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  497 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i  497 (1120)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|+||++.+....  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence            47899999999999986 479999999999999999864321  12346889999999999999999  79999999999


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee---eCCCCceeEEEEcCCCCeE
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~  574 (1120)
                      +|||+.++.++..+.+|...|.+++|++  ++.+|++++.|++|++||..........   ..|...|.+++|+|++.  
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  530 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL--  530 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence            9999999999999999999999999865  4578999999999999997543211111   23444455555555432  


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                                       ...+++++.|+.|++||+.+++....+..|.  ..|.+++|+|++++|++++.||.|++||+.
T Consensus       531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                             1479999999999999999999988887664  479999999999999999999999999987


Q ss_pred             Cc
Q 001224          655 DG  656 (1120)
Q Consensus       655 ~~  656 (1120)
                      ++
T Consensus       592 ~~  593 (694)
T 3dm0_A          592 EG  593 (694)
T ss_dssp             TT
T ss_pred             CC
Confidence            66

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-32  Score=306.86  Aligned_cols=306  Identities=12%  Similarity=0.132  Sum_probs=243.5

Q ss_pred             cceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       355 ~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      .+...+.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+..                   +.+|...|.+++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~   82 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDV   82 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEE
Confidence            34555677999999999999999 599999999999999999887763                   7789999999999


Q ss_pred             cCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-----CcEEEEECCCCc---
Q 001224          435 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA---  506 (1120)
Q Consensus       435 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-----~~i~vwd~~~~~---  506 (1120)
                      +|++++|++++.||.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+..+.   
T Consensus        83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence            9999999999999999999999988665   344 888999999999999  78999888     999999998664   


Q ss_pred             --------eeEEeecccc--CeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          507 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       507 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                              .+..+..|..  .+.+++|++  ++.+|++++.||.|++||+.+ ......+..+...+.+++|+|++    
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----  230 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL----  230 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS----
T ss_pred             eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC----
Confidence                    3455566666  899999865  557999999999999999987 45555556666655555555554    


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                                       ++|++++.||.|++||+.+++.+..+...   ..+.+++|+|+++++++++.++.+.+|....
T Consensus       231 -----------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          231 -----------------TYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             -----------------SEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred             -----------------CEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence                             58999999999999999999999888733   3589999999999999999998766664422


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      .                                                                      .....+++|
T Consensus       291 ~----------------------------------------------------------------------~~~~~i~~~  300 (369)
T 3zwl_B          291 N----------------------------------------------------------------------EGKFEARFY  300 (369)
T ss_dssp             --------------------------------------------------------------------------CEEEEE
T ss_pred             C----------------------------------------------------------------------CCcceeEEE
Confidence            2                                                                      001245667


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  789 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~  789 (1120)
                      ++........   +    .+|...|.+++|+|+++.|++++.||.|++|++...
T Consensus       301 d~~~~~~~~~---~----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          301 HKIFEEEIGR---V----QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ETTTCCEEEE---E----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ecCCCcchhh---e----ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            6654322111   1    247889999999999999999999999999998654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=319.59  Aligned_cols=362  Identities=12%  Similarity=0.159  Sum_probs=248.0

Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      .++.+++|++..++....+..|.  ..|.+++|+| ++++|++++.||.|++||+.++. ....+.....          
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~----------   87 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV----------   87 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE----------
T ss_pred             ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc----------
Confidence            35567888888888777777654  4899999999 99999999999999999998762 2211110000          


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                              ....           .....+|..
T Consensus        88 --------------------------------------------------------~~~~-----------~~~~~~~~~  100 (408)
T 4a11_B           88 --------------------------------------------------------CSIG-----------RDHPDVHRY  100 (408)
T ss_dssp             --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred             --------------------------------------------------------cccc-----------ccccccCCC
Confidence                                                                    0000           000024788


Q ss_pred             cEEEEEEcC-CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC--
Q 001224          759 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--  835 (1120)
Q Consensus       759 ~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d--  835 (1120)
                      .|.+++|+| ++..+++++.||.|++|++...                      ......    .+...+.++++++.  
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~~----~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADVF----NFEETVYSHHMSPVST  154 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEEE----ECSSCEEEEEECSSCS
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------ccceec----cCCCceeeeEeecCCC
Confidence            999999999 7789999999999999987432                      211110    15677889999884  


Q ss_pred             -CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeecce-eeEee-------
Q 001224          836 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL-------  904 (1120)
Q Consensus       836 -~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l-------  904 (1120)
                       +.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+       
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence             44899988 89999999999999999999999999999999 666 69999999999999998754 33333       


Q ss_pred             --------cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          905 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       905 --------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                              .+|...|++++|+|++++|++++.||.|++||+.+++..............  ............+.+++++
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  311 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP  311 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence                    679999999999999999999999999999999987643221111111111  1122333344456666668


Q ss_pred             eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                      .++.|++||+.+++.+..+.  +|...|++++|+|++++|++++.||.|++||+.+++.+.....    .       .. 
T Consensus       312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----~-------~~-  377 (408)
T 4a11_B          312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE----T-------TT-  377 (408)
T ss_dssp             ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred             cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc----e-------Ee-
Confidence            99999999999999988876  7899999999999999999999999999999999988765431    0       01 


Q ss_pred             eEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1057 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1057 ~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                       ...+.+.+...+.+.+.|+.+++|+...
T Consensus       378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -----------------------------
T ss_pred             -ccccccccceeecccCccCceeecCCcc
Confidence             1233443455677788899999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-32  Score=299.85  Aligned_cols=254  Identities=16%  Similarity=0.206  Sum_probs=206.7

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  436 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-  436 (1120)
                      ..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++  +.+.                   .+.+|.++|.+++|+| 
T Consensus         5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~   64 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   64 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred             ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence            3469999999999999995 999999999999999753  2222                   4789999999999987 


Q ss_pred             -CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCc--eeEEe
Q 001224          437 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  511 (1120)
Q Consensus       437 -dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~  511 (1120)
                       +|++||+|+.|++|+|||+++++.. ....+.+|...|.+++|+|+  +.  +|++++.|+.|++||++++.  ....+
T Consensus        65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~  141 (297)
T 2pm7_B           65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII  141 (297)
T ss_dssp             GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred             CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence             4899999999999999999987522 23357789999999999998  67  79999999999999998763  24677


Q ss_pred             eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCC----CceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      .+|...|.+++|++..           ++.+|++|+.|++|++||++...    ....+..|...|.+++|+|++.    
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~----  217 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----  217 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence            8999999999998752           35699999999999999998765    3345666777777777777641    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                                    .+.+|++++.|++|++||+.+..   ....+..+.+...|.+++|+|+|++|++++.|+.|++|+.
T Consensus       218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence                          02479999999999999998753   1223322334557899999999999999999999999997


Q ss_pred             c
Q 001224          654 S  654 (1120)
Q Consensus       654 ~  654 (1120)
                      .
T Consensus       284 ~  284 (297)
T 2pm7_B          284 N  284 (297)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.8e-32  Score=313.32  Aligned_cols=302  Identities=12%  Similarity=0.123  Sum_probs=235.2

Q ss_pred             cccCCCCceEEEEEcCCC-CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEE
Q 001224          421 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK  498 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~  498 (1120)
                      .+.+|...|.+++|+|++ ++||+|+.||.|+|||+.+++... ...+.+|.+.|.+++|+| ++.  +|++++.|+.|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence            367899999999999999 999999999999999999887553 223457999999999999 556  799999999999


Q ss_pred             EEECCCCceeEEeecc---ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          499 VWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       499 vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      +||+.+ ..+..+..|   ...|.+++|++  ++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.   
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~---  217 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD---  217 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence            999985 555666544   48899999875  45799999999999999994 455666666666666666666553   


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC----CceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  650 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  650 (1120)
                                       .++++++.|+.|++||+.+    +..+..+. +  ...|.+++|+| ++.+|++++.|+.|++
T Consensus       218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence                             2799999999999999987    56666663 3  34799999999 9999999999999999


Q ss_pred             EEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       651 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      ||+.++ .....+.++....                                                            
T Consensus       278 wd~~~~-~~~~~~~~~~~~~------------------------------------------------------------  296 (383)
T 3ei3_B          278 YSSYDW-SKPDQIIIHPHRQ------------------------------------------------------------  296 (383)
T ss_dssp             EETTBT-TSCSEEEECCBCC------------------------------------------------------------
T ss_pred             EECCCC-ccccccccccccc------------------------------------------------------------
Confidence            999877 3333332221100                                                            


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  810 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~  810 (1120)
                                             ..|...+. +.|+|++                                         
T Consensus       297 -----------------------~~~~~~~~-~~~~p~~-----------------------------------------  311 (383)
T 3ei3_B          297 -----------------------FQHLTPIK-ATWHPMY-----------------------------------------  311 (383)
T ss_dssp             -----------------------CTTSCCCC-CEECSSS-----------------------------------------
T ss_pred             -----------------------cccccceE-EeccCCC-----------------------------------------
Confidence                                   00111221 2333333                                         


Q ss_pred             CCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC--CCCCeEEEEEecCCCcEEEEEeCC
Q 001224          811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD  887 (1120)
Q Consensus       811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d  887 (1120)
                                     .+..++++|++++  +++ |+.|++||+.+++.+..+.+  |...+.+++|+| ++++|++|+ |
T Consensus       312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d  372 (383)
T 3ei3_B          312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G  372 (383)
T ss_dssp             ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred             ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence                           3445778889888  666 89999999999999999876  456788889999 899999997 9


Q ss_pred             CcEEEEEeec
Q 001224          888 SSIQIYNVRV  897 (1120)
Q Consensus       888 g~v~vwd~~~  897 (1120)
                      |.|++||+.+
T Consensus       373 ~~i~iw~~~~  382 (383)
T 3ei3_B          373 FNILIWNRED  382 (383)
T ss_dssp             TEEEEEECC-
T ss_pred             CcEEEEecCC
Confidence            9999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=309.07  Aligned_cols=299  Identities=11%  Similarity=0.159  Sum_probs=235.7

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecC---CCcEEEEECCCCceeEEe-eccccCeEEEeeccCC-CceEEEEEecCCe
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK  540 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~---d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~  540 (1120)
                      .+.+|...|.+++|+|++.. ++++|+.   |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            45689999999999999975 5667776   999999999998876543 3799999999997752 2579999999999


Q ss_pred             EEEEecCCCC-CceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeEEE
Q 001224          541 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI  618 (1120)
Q Consensus       541 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  618 (1120)
                      |++||+.+.+ ....+..|...|.++.+.+.               ++|+|++++|++++.||.|++||+.+++ .+..+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence            9999999887 77778888888888765432               1345666789999999999999999887 67777


Q ss_pred             ecCCC--CCCcCeEE----EcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhh
Q 001224          619 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  692 (1120)
Q Consensus       619 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1120)
                      ..+..  ...+.+++    |+|+++++++++.||.|++||+.++.. ...                              
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~------------------------------  205 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWE------------------------------  205 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEE------------------------------
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eee------------------------------
Confidence            65433  23677787    788999999999999999999865510 000                              


Q ss_pred             hccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceE
Q 001224          693 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  772 (1120)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  772 (1120)
                                                                                   ..                 
T Consensus       206 -------------------------------------------------------------~~-----------------  207 (357)
T 3i2n_A          206 -------------------------------------------------------------TN-----------------  207 (357)
T ss_dssp             -------------------------------------------------------------EE-----------------
T ss_pred             -------------------------------------------------------------cC-----------------
Confidence                                                                         00                 


Q ss_pred             EEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc---CCCEEEEEe-CCcEE
Q 001224          773 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS  848 (1120)
Q Consensus       773 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~s-dg~i~  848 (1120)
                                                                        |...|.+++|+|   ++.++++++ ||.|+
T Consensus       208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                                                              344556666666   666677666 67777


Q ss_pred             EEEcCCCceeeeec-----CCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeecc-------------------eeeEe
Q 001224          849 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK  903 (1120)
Q Consensus       849 vwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~  903 (1120)
                      +||+.+++....+.     +|...|++++|+| +++ +|++|+.||.|++||+.++                   +.+..
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            77776655544443     8999999999999 777 8999999999999999853                   46778


Q ss_pred             ecccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCc
Q 001224          904 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW  940 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~  940 (1120)
                      +.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            899999999999999999998 8999999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2e-33  Score=326.42  Aligned_cols=209  Identities=13%  Similarity=0.127  Sum_probs=169.5

Q ss_pred             ccCCCCceEEEEEcC-CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEE
Q 001224          422 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       422 l~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~v  499 (1120)
                      ..+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.+.|++|+|+| ++.  +|++|+.||+|++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence            456888999999999 6789999999999999999887643 3335679999999999998 566  7999999999999


Q ss_pred             EECCCCceeEEeecc--ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec
Q 001224          500 WDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      ||++++........|  ...+.+++|+  +++.+|++|+.||.|++||++. +....+..|...|.+++|+|++.     
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~-----  263 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVS--ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD-----  263 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEE--TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred             eeccCCceeEEeccCCCCccEEEEEEC--CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence            999876554444333  3446667765  4568999999999999999875 45566777878888888877765     


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                                     .++++++.|+.|++||+++.+....+. ...+...|.+++|+|+|.+|++++.||.|++||+.++
T Consensus       264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence                           468899999999999998876544332 2234557999999999999999999999999999876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-32  Score=314.65  Aligned_cols=308  Identities=12%  Similarity=0.162  Sum_probs=239.3

Q ss_pred             EEECCCCceeEEEecCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccc
Q 001224          606 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  684 (1120)
Q Consensus       606 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1120)
                      +|++........+..|  ...|.+++|+|++ ++|++|+.||.|++||+.++. ....+                     
T Consensus        57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------------------  112 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFI---------------------  112 (383)
T ss_dssp             HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEE---------------------
T ss_pred             cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceee---------------------
Confidence            3444555666666655  4479999999999 999999999999999987651 11100                     


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEE
Q 001224          685 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  764 (1120)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  764 (1120)
                                                                         .                ..+|...|.+++
T Consensus       113 ---------------------------------------------------~----------------~~~h~~~v~~~~  125 (383)
T 3ei3_B          113 ---------------------------------------------------Q----------------GMGPGDAITGMK  125 (383)
T ss_dssp             ---------------------------------------------------C----------------CCSTTCBEEEEE
T ss_pred             ---------------------------------------------------e----------------cCCcCCceeEEE
Confidence                                                               0                013778999999


Q ss_pred             EcC-CCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe
Q 001224          765 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  843 (1120)
Q Consensus       765 ~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s  843 (1120)
                      |+| ++..+++++.|+.|++||+....                       .........+...|.+++|+|+++++++++
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence            999 78999999999999999974211                       111111122568899999999999999999


Q ss_pred             -CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEeec----ceeeEeecccccceEEEEEc
Q 001224          844 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       844 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s  917 (1120)
                       |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+    +.++..+ +|...|++++|+
T Consensus       183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s  259 (383)
T 3ei3_B          183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN  259 (383)
T ss_dssp             TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred             CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence             899999999 5778889999999999999999 777 999999999999999998    5666666 699999999999


Q ss_pred             c-CCCEEEEEeCCCCEEEEECCCcccccceeeecc--CCCCC-------CCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001224          918 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT  987 (1120)
Q Consensus       918 ~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~~~fspdg~~la~~~d~~v~i~d~~  987 (1120)
                      | ++++|++++.|+.|++||+.+++..........  ..+..       ....+..++|+|+|++ ..+.|+.|++||+.
T Consensus       260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN  338 (383)
T ss_dssp             TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence            9 999999999999999999998765432221110  01111       0012334556666665 22478999999999


Q ss_pred             CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC
Q 001224          988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      +++++..+....|...+..++|+||+++|++|+ ||.|+|||+++
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999998887655788899999999999999997 99999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.4e-32  Score=308.10  Aligned_cols=244  Identities=12%  Similarity=0.094  Sum_probs=205.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc--eeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      |.+.|++++|+|+|+ +|++|+.||.|+|||+.+++  .+.                   .+.+|...|.+++|+|++++
T Consensus         7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence            889999999999999 59999999999999999886  443                   36789999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce---e-EEeecccc
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA  516 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~---~-~~~~~h~~  516 (1120)
                      |++++.||.|++||+.+++.. ....+.+|...|.+++|+|+++  ++++++.|+.|++||+..+..   . ....+|..
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             EEEEcCCCeEEEEECCCCeee-eeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            999999999999999988744 2334578999999999999999  799999999999999998773   2 33367899


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCC------------------CCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL------------------GSRVDYEAPGRWCTTMAYSADGTRTYQGF  578 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~~~~~v~~~~~s~~g~~~~~~~  578 (1120)
                      .|.+++|++  ++.+|++++.||.|++||+...                  .....+..+.                   
T Consensus       144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  202 (372)
T 1k8k_C          144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-------------------  202 (372)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-------------------
T ss_pred             CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC-------------------
Confidence            999999865  4579999999999999997532                  2222222333                   


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                        ..+..++|+|++++|++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++.+++++ .|+.|++|++.+
T Consensus       203 --~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          203 --GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             --SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             --CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence              355666666666789999999999999999999999998664  379999999999988888 899999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=306.16  Aligned_cols=322  Identities=14%  Similarity=0.191  Sum_probs=238.5

Q ss_pred             cccCCCCceEEEEEcCCCCeEE-EEEC---CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC---CCceEEEEecC
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD  493 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~la-s~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~s~  493 (1120)
                      ++.+|...|.+++|+|++..++ +|+.   |+.|+|||+.+++....  ...+|...|.+++|+|+   +.  ++++|+.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~   88 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF   88 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence            5678999999999999996555 5555   99999999999875432  23379999999999999   57  6999999


Q ss_pred             CCcEEEEECCCCc-eeEEeeccccCeEEEeecc----CCCceEEEEEecCCeEEEEecCCCC-CceeeeCCCC----cee
Q 001224          494 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGR----WCT  563 (1120)
Q Consensus       494 d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~  563 (1120)
                      |+.|++||+.+++ .+..+.+|...|.+++|.+    ++++.+|++++.||.|++||+.... ....+..+..    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999988 8899999999999997643    5677899999999999999999876 4444443322    333


Q ss_pred             EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC---CCCEEE
Q 001224          564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA  640 (1120)
Q Consensus       564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~  640 (1120)
                      ++++.                 ++++|+++++++++.||.|++||+++++...... +  ...+.+++|+|   ++.+++
T Consensus       169 ~~~~~-----------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          169 TVAFG-----------------NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             EEEEE-----------------CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred             EEEEE-----------------eccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence            33321                 1156777899999999999999999998765544 3  33699999999   999999


Q ss_pred             EEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCC
Q 001224          641 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  720 (1120)
Q Consensus       641 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  720 (1120)
                      +++.||.|++||+.++ .....+..                                                       
T Consensus       229 ~~~~dg~i~i~d~~~~-~~~~~~~~-------------------------------------------------------  252 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQ-HPTKGFAS-------------------------------------------------------  252 (357)
T ss_dssp             EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred             EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence            9999999999998765 22111100                                                       


Q ss_pred             cceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCcccc
Q 001224          721 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA  799 (1120)
Q Consensus       721 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  799 (1120)
                                    ...                .+|...|.+++|+|++. .+++++.||.|++|++...          
T Consensus       253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------  292 (357)
T 3i2n_A          253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP----------  292 (357)
T ss_dssp             --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred             --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence                          000                13677888899999888 7888888899998887321          


Q ss_pred             ccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224          800 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  879 (1120)
Q Consensus       800 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  879 (1120)
                                  ...               ..+.+++.....  .+        +.+.+..+.+|...|++++|+| +++
T Consensus       293 ------------~~~---------------~~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~  334 (357)
T 3i2n_A          293 ------------IQR---------------SKKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR  334 (357)
T ss_dssp             ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred             ------------ccc---------------ccccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence                        000               011112211100  11        2245667788999999999999 788


Q ss_pred             EEE-EEeCCCcEEEEEeeccee
Q 001224          880 IIA-IGMDDSSIQIYNVRVDEV  900 (1120)
Q Consensus       880 ~la-sg~~dg~v~vwd~~~~~~  900 (1120)
                      +|+ +|+.||.|++||+.+.+.
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC---
T ss_pred             eEEEEecCCCcEEEEECCCccc
Confidence            887 899999999999987653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.8e-32  Score=308.52  Aligned_cols=264  Identities=17%  Similarity=0.260  Sum_probs=209.9

Q ss_pred             cCCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC-
Q 001224          362 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  437 (1120)
Q Consensus       362 ~h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-  437 (1120)
                      +|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....-              .....|...|.+++|+|+ 
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------YVDADADENFYTCAWTYDS   81 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------EECSCTTCCEEEEEEEECT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------ccccCCCCcEEEEEeccCC
Confidence            59999999999995   555677777788999999998876643110              012347889999999999 


Q ss_pred             ---CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224          438 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF--  511 (1120)
Q Consensus       438 ---g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--  511 (1120)
                         |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+  
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence               6799999999999999999988665   6789999999999999 777  7999999999999999999999988  


Q ss_pred             -eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCC-------------eEEec
Q 001224          512 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG  577 (1120)
Q Consensus       512 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~~~~~  577 (1120)
                       .+|...|.+++|++  ++.+|++++.||.|++||+++......+..      .+.++|++.             .....
T Consensus       157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence             68999999999965  557999999999999999987544332221      011111111             01111


Q ss_pred             ccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--------------eEEEecCCCCCCcCeEEEcCC--CCEEEE
Q 001224          578 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV  641 (1120)
Q Consensus       578 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~  641 (1120)
                      .+...+.+++|+  ++++++++.||.|++||+.++..              +..+..+.  ..|.+++|+|+  +++|++
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEE
Confidence            134467777777  56899999999999999987754              56666554  47999999999  999999


Q ss_pred             EECCCcEEEEEccCc
Q 001224          642 STNDNGIKILATSDG  656 (1120)
Q Consensus       642 ~~~dg~i~iwd~~~~  656 (1120)
                      ++.||.|++||+.++
T Consensus       305 ~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          305 GNQVGKLYVWDLEVE  319 (366)
T ss_dssp             ECTTSCEEEEECCSS
T ss_pred             EecCCcEEEEECCCC
Confidence            999999999999876

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-34  Score=319.95  Aligned_cols=326  Identities=12%  Similarity=0.112  Sum_probs=243.3

Q ss_pred             cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224          470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  549 (1120)
Q Consensus       470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  549 (1120)
                      -...|.+++|+|||+  ++||++.|++|+  |...++++   .+|...|.+++|+|++         .++.+.+|+.   
T Consensus        14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~---   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA---   74 (588)
T ss_dssp             CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC---
T ss_pred             hhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC---
Confidence            457899999999999  799999999999  76666554   7999999999997643         3555555543   


Q ss_pred             CCceeee-CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC---CC
Q 001224          550 GSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---LP  625 (1120)
Q Consensus       550 ~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~  625 (1120)
                      +....+. .+...|.+++|+|+|                     ..|++++.||.|++||..+  ++..+. +..   ..
T Consensus        75 ~~~~~~~~~~~~~V~~vawSPdG---------------------~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~  130 (588)
T 2j04_A           75 QQNGLLNSQPVCYPRVCKPSPID---------------------DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSR  130 (588)
T ss_dssp             CSSCSSTTSCSCCEEEEEECSSS---------------------SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTT
T ss_pred             CCceEeecCCCCcEEEEEECCCC---------------------CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccc
Confidence            3222222 224455555555555                     5899999999999999644  555555 332   12


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224          626 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  705 (1120)
Q Consensus       626 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1120)
                      .+.+++|||||++|++|+.||+|++||+.++ .....                 .|                        
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~-~l~~~-----------------~~------------------------  168 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKN-SENTP-----------------EF------------------------  168 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCC-TTTCC-----------------CC------------------------
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCC-ccccc-----------------cc------------------------
Confidence            5899999999999999999999999998765 10000                 00                        


Q ss_pred             ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                                                +.                                      +         ..+.
T Consensus       169 --------------------------i~--------------------------------------l---------~ti~  175 (588)
T 2j04_A          169 --------------------------YF--------------------------------------E---------SSIR  175 (588)
T ss_dssp             --------------------------EE--------------------------------------E---------EEEE
T ss_pred             --------------------------ee--------------------------------------e---------eeee
Confidence                                      00                                      0         0000


Q ss_pred             ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce---eeee-
Q 001224          786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF-  861 (1120)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~---~~~~-  861 (1120)
                                                      ....+|...|.+++|+||| .++++.|++|++||+.++..   .+++ 
T Consensus       176 --------------------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          176 --------------------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             --------------------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             --------------------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeec
Confidence                                            0001277889999999999 44444499999999987763   3456 


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEE--ccCCCEEEEEeCCCCEEEEECCC
Q 001224          862 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       862 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      .+|...|.+++|+   +.+||+++ ++.|++||+.+++......+|.+.|..++|  +||+..|++++.||+ ++|..+.
T Consensus       223 ~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          223 NASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             CCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred             ccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence            4788899999999   37888887 699999999988874444489999999999  999999999999999 9998762


Q ss_pred             cccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE
Q 001224          940 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus       940 ~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
                                              ++|+||+..++.. |+++++|+...+. +..+   .+...|++++|||||+.+|++
T Consensus       298 ------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~~  348 (588)
T 2j04_A          298 ------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAIV  348 (588)
T ss_dssp             ------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEEE
T ss_pred             ------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEEE
Confidence                                    4589999888775 9999999986554 3332   236679999999999999988


Q ss_pred             E
Q 001224         1020 F 1020 (1120)
Q Consensus      1020 ~ 1020 (1120)
                      +
T Consensus       349 ~  349 (588)
T 2j04_A          349 Y  349 (588)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-32  Score=309.45  Aligned_cols=321  Identities=13%  Similarity=0.153  Sum_probs=239.6

Q ss_pred             ccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEE
Q 001224          422 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  501 (1120)
Q Consensus       422 l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd  501 (1120)
                      +..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45589999999999999999999999999999999886 223336889999999999999999  799999999999999


Q ss_pred             CCCCceeEE--eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce---ee-eCCCCceeEEEEcCCCCeEE
Q 001224          502 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DY-EAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       502 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~-~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      +.+++....  +..|...|.+++|++  ++.+|++++.|+.|++||++......   .+ ..|..               
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~---------------  143 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS---------------  143 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence            998876544  467999999999865  45799999999999999998765321   11 22233               


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC------------------CCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                            .+.+++|+|++++|++++.||.|++||+                  .+++.+..+..+  ...+.+++|+|+++
T Consensus       144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS  215 (372)
T ss_dssp             ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred             ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence                  4555666666678999999999999995                  367777777655  34799999999999


Q ss_pred             EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccccc
Q 001224          638 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  717 (1120)
Q Consensus       638 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  717 (1120)
                      +|++++.|+.|++||+.++ +.+..+                                                      
T Consensus       216 ~l~~~~~d~~i~i~d~~~~-~~~~~~------------------------------------------------------  240 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKK-MAVATL------------------------------------------------------  240 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGT-TEEEEE------------------------------------------------------
T ss_pred             EEEEEeCCCEEEEEECCCC-ceeEEE------------------------------------------------------
Confidence            9999999999999998765 221111                                                      


Q ss_pred             CCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc--cccCCCC
Q 001224          718 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR--TERNSSG  795 (1120)
Q Consensus       718 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~--~~~~~~~  795 (1120)
                                                          ..|...|.+++|+|++..++++ .|+.+++|++..  +....  
T Consensus       241 ------------------------------------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~--  281 (372)
T 1k8k_C          241 ------------------------------------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF--  281 (372)
T ss_dssp             ------------------------------------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE--
T ss_pred             ------------------------------------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE--
Confidence                                                1155678999999999977766 899999999853  11100  


Q ss_pred             ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEE---EcCCCcee------eee-cCCC
Q 001224          796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPP  865 (1120)
Q Consensus       796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vw---d~~~~~~~------~~~-~~~~  865 (1120)
                                        .. .+..  +..             -..+....+++|   +... ...      ..+ .+|.
T Consensus       282 ------------------~~-~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~  326 (372)
T 1k8k_C          282 ------------------GG-RLDV--PKQ-------------SSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHK  326 (372)
T ss_dssp             ------------------CC-CCCC--C---------------------CHHHHHHHCCCCC----------CCCSSSSS
T ss_pred             ------------------ee-ccCc--ccc-------------chhhhcchhhhhhhccccc-ccccCcccccccccccc
Confidence                              00 0000  000             011112345555   4322 221      233 4899


Q ss_pred             CCeEEEEEecCCC---cEEEEEeCCCcEEEEEeecce
Q 001224          866 PAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       866 ~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      ..|++++|++.++   .+|++|+.||.|++|++.+++
T Consensus       327 ~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          327 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             CCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9999999886477   999999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.5e-32  Score=311.14  Aligned_cols=252  Identities=11%  Similarity=0.090  Sum_probs=208.4

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc------eeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      +.+|.+.|++++|+|  + +|++|+.||+|+|||+.+++      .+.                   .+.+|...|.+++
T Consensus        12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~   69 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVD   69 (397)
T ss_dssp             SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEE
T ss_pred             hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEE
Confidence            335999999999999  4 69999999999999999877      232                   3668999999999


Q ss_pred             EcCC----C---CeEEEEECCCeEEEEEccCCce-----eeeeeeeccc-----ccCeEEEEEc----CCCCceE-EEEe
Q 001224          434 WSPD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITC  491 (1120)
Q Consensus       434 ~spd----g---~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~  491 (1120)
                      |+|+    |   ++|++++.||.|++||+.+++.     +.   .+.+|     ...|.+++|+    |+++  + |+++
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~  144 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVAT  144 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEE
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEE
Confidence            9999    9   9999999999999999998875     43   57778     5899999999    9999  7 9999


Q ss_pred             cCCCcEEEEECCC------CceeE-----Eee-------ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224          492 GDDKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  553 (1120)
Q Consensus       492 s~d~~i~vwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  553 (1120)
                      +.|+.|++||+.+      ++.+.     .+.       .|...|.+++|++  ++ ++++++.||.|++||+++.....
T Consensus       145 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~  221 (397)
T 1sq9_A          145 DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLY  221 (397)
T ss_dssp             ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred             eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeE
Confidence            9999999999998      77776     774       4889999999865  55 99999999999999999876666


Q ss_pred             eeeC---C---CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCC--
Q 001224          554 DYEA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG--  622 (1120)
Q Consensus       554 ~~~~---~---~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~--  622 (1120)
                      .+..   |   ...+.+++|+                     |++++|++++.|   |.|++||+.+++.+..+....  
T Consensus       222 ~~~~~~~h~~~~~~i~~i~~~---------------------~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~  280 (397)
T 1sq9_A          222 NFESQHSMINNSNSIRSVKFS---------------------PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  280 (397)
T ss_dssp             EEECCC---CCCCCEEEEEEC---------------------SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             EEeccccccccCCccceEEEC---------------------CCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence            6665   5   5555555554                     455689999999   999999999999999887610  


Q ss_pred             ---------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          623 ---------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       623 ---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                               +...|.+++|+|++++|++++.||.|++||+.++ +.+..+
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~  329 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL  329 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence                     2447999999999999999999999999999877 444333

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-33  Score=318.13  Aligned_cols=257  Identities=14%  Similarity=0.120  Sum_probs=195.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      +.+.|++++|+|+|+ +|++|+.||.|+|||+.++  +.+.                   .+.+|...|.+++|+|++++
T Consensus        10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred             CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence            667999999999999 5999999999999999987  3332                   47789999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCc---eeEEeec-ccc
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA  516 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~---~~~~~~~-h~~  516 (1120)
                      |++|+.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++   ....+.+ |..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            99999999999999998873334446788999999999999999  69999999999999999887   4778887 999


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CC--ceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      .|.+++|++  ++.+|++++.|+.|++||+............  ..  ....+.      ..+  .+...+.+++|+|++
T Consensus       148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred             CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence            999999965  5579999999999999998643321110000  00  000000      011  233467777888888


Q ss_pred             CEEEEEeCCCeEEEEECCCCce----eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      ++|++++.||.|++||+.+++.    +..+..+.  ..|.+++|+|++++|++++.++.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            8999999999999999999987    66666554  479999999999999998766665 66654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=294.64  Aligned_cols=244  Identities=17%  Similarity=0.230  Sum_probs=203.6

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+.+|.+.|++++| |++++ |++|+.||.|+|||+.+++...                   .+..|...|.+++|+|+
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~   70 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDSE   70 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEETT
T ss_pred             HHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECCC
Confidence            334569999999999 99994 9999999999999998887665                   35678999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccC
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      +++|++|+.||.|++|++...........+.+|...|.+++|  +++  ++++++.|+.|++||  .++.+..+..|...
T Consensus        71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~  144 (313)
T 3odt_A           71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNAS  144 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSC
T ss_pred             CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCc
Confidence            999999999999999999876544445578899999999999  456  799999999999999  78888899999999


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      |.++++.+. ++.++++++.||.|++||..  .....+.. +...+.++                     +++|++. ++
T Consensus       145 v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~---------------------~~~~~~~-~~  199 (313)
T 3odt_A          145 VWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHL---------------------AVVDDGH-FI  199 (313)
T ss_dssp             EEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEE---------------------EEEETTE-EE
T ss_pred             eeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEE---------------------EEcCCCe-EE
Confidence            999998762 44799999999999999932  33333333 44444444                     4555544 99


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.||.|++||+.+++.+..+..+.  ..+.+++|+|++ .+++++.||.|++||+.++
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            99999999999999999999998664  479999999999 5889999999999998776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=317.04  Aligned_cols=319  Identities=8%  Similarity=-0.014  Sum_probs=234.6

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      -...|.+|+|||||+ ++|+++.|++|+  |...++                      .+.+|...|.+++|+|+|    
T Consensus        14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg----   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE----   64 (588)
T ss_dssp             CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred             hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence            358899999999999 599999999999  754443                      246899999999999999    


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc-----C
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P  517 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~  517 (1120)
                         .++.+.+|+.+....+    .+ +|...|.+++|||||+  .|++++.||.|++||.+.  ++..+. |..     .
T Consensus        65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence               4565555554432211    22 5688999999999999  699999999999999544  777777 765     4


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCC-------ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                      |.+++|+  ++|++|++|+.||+|++||+..+..       ..++..+.                .| +...+..++|+|
T Consensus       132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~----------------~g-h~~~V~sVawSP  192 (588)
T 2j04_A          132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD----------------AG-SKDWVTHIVWYE  192 (588)
T ss_dssp             EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC----------------TT-CCCCEEEEEEET
T ss_pred             EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc----------------cc-ccccEEEEEEcC
Confidence            9999985  4668999999999999999987542       12221110                11 123555666666


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccc
Q 001224          591 TKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  667 (1120)
Q Consensus       591 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  667 (1120)
                      +|  +++++.|++|++||+.++..   ..++.. .+...|.+++|+  |+.|++++ +++|++||+.++......     
T Consensus       193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-----  261 (588)
T 2j04_A          193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-----  261 (588)
T ss_dssp             TE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-----
T ss_pred             Cc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-----
Confidence            66  88899999999999988774   345531 233479999999  68898887 699999998766211100     


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccce
Q 001224          668 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  747 (1120)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  747 (1120)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (588)
T 2j04_A          262 --------------------------------------------------------------------------------  261 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCCccccccEEEEEE--cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224          748 SLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  825 (1120)
Q Consensus       748 ~~~~~~~~~~~~i~~l~~--s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  825 (1120)
                            .+|...+..++|  +|++..++++..+|. ++|..+                                      
T Consensus       262 ------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------------------------------  296 (588)
T 2j04_A          262 ------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------------------------------  296 (588)
T ss_dssp             ------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------------------------------
T ss_pred             ------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------------------------------
Confidence                  126677888899  999988899998999 888751                                      


Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  885 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  885 (1120)
                         .++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus       297 ---~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~  349 (588)
T 2j04_A          297 ---ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY  349 (588)
T ss_dssp             ---SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred             ---cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence               25577887776665 7778888765433 334443 55578888888 787887765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-31  Score=304.61  Aligned_cols=293  Identities=16%  Similarity=0.211  Sum_probs=238.9

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .+...-+|...+.+..+++++.. +++++.||.|+|||+.+++....                  ....|...|.+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s  143 (401)
T 4aez_A           83 RVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS  143 (401)
T ss_dssp             EEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred             eeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence            34444456665544444444454 67788999999999999887653                  123488999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCceeEEeecc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH  514 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h  514 (1120)
                      |++++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.|+.|++||+. .+..+..+.+|
T Consensus       144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  216 (401)
T 4aez_A          144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH  216 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence            999999999999999999999988665   678999999999994  45  79999999999999999 56778899999


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      .+.|.+++|++  ++.+|++++.||.|++||+.+......+..+...+.+++|+|++.                    ..
T Consensus       217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~l  274 (401)
T 4aez_A          217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NL  274 (401)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TE
T ss_pred             CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CE
Confidence            99999999976  557999999999999999998887777777888888888887765                    45


Q ss_pred             EEEEe--CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCcchhhhhcccccccc
Q 001224          595 FLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDA  670 (1120)
Q Consensus       595 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~  670 (1120)
                      +++++  .|+.|++||+.+++.+..+..+   ..+.+++|+|+++++++++  .||.|++|++.++. ...         
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~---------  341 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTK---------  341 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEE---------
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-cee---------
Confidence            66665  7999999999999999888743   3599999999999999954  89999999987651 110         


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224          671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  750 (1120)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~  750 (1120)
                                                                                     ++.+             
T Consensus       342 ---------------------------------------------------------------~~~~-------------  345 (401)
T 4aez_A          342 ---------------------------------------------------------------QVDI-------------  345 (401)
T ss_dssp             ---------------------------------------------------------------EEEE-------------
T ss_pred             ---------------------------------------------------------------EEEe-------------
Confidence                                                                           0010             


Q ss_pred             cCCccccccEEEEEEcCCCceEEEeccCceEEEeeecc
Q 001224          751 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  788 (1120)
Q Consensus       751 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~  788 (1120)
                         .+|...|.+++|+|++..+++++.||.|++|++..
T Consensus       346 ---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          346 ---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence               12677889999999999999999999999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.3e-32  Score=308.43  Aligned_cols=290  Identities=12%  Similarity=0.169  Sum_probs=207.8

Q ss_pred             cCeEEEEEcCCCCceEEEEecCCC-------cEEEEECCCCce----------eEEeeccccCeEEEeeccCCCceEEEE
Q 001224          472 GGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIFS  534 (1120)
Q Consensus       472 ~~V~~v~~s~d~~~~~l~s~s~d~-------~i~vwd~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s  534 (1120)
                      -+|++++|+||++  +|++||.|.       .|++|++..+..          ...+.+|...|.++++.  .  ..+++
T Consensus        15 ~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~~   88 (365)
T 4h5i_A           15 YPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIILV   88 (365)
T ss_dssp             SCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEEE
T ss_pred             CCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEEE
Confidence            4899999999999  789987654       499999876532          12456788888888753  2  35665


Q ss_pred             Ee-----------cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe--CC
Q 001224          535 TA-----------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DD  601 (1120)
Q Consensus       535 ~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d  601 (1120)
                      |.           .|+.+++|++..........      ....+..      ....+..+.+++|+|||+++++++  .|
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~v~fSpDg~~la~as~~~d  156 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL------TSVDFDA------STNADDYTKLVYISREGTVAAIASSKVP  156 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE------EEECSSC------CCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEe------eeeceee------cCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence            53           46788888876644332211      1111100      001122456677777777876554  78


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  681 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1120)
                      ++|++||+.+++++..+..+   ..|.+++|+|||+++++++.+ .+++|+..++.......                  
T Consensus       157 ~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~------------------  214 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT------------------  214 (365)
T ss_dssp             CEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC------------------
T ss_pred             CEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee------------------
Confidence            99999999999999888733   359999999999999998854 56667655441100000                  


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224          682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  761 (1120)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  761 (1120)
                                                                                             ...      
T Consensus       215 -----------------------------------------------------------------------~~~------  217 (365)
T 4h5i_A          215 -----------------------------------------------------------------------DFD------  217 (365)
T ss_dssp             -----------------------------------------------------------------------CCC------
T ss_pred             -----------------------------------------------------------------------cCC------
Confidence                                                                                   001      


Q ss_pred             EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224          762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  841 (1120)
Q Consensus       762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~  841 (1120)
                                                                                   |...|.+++|+|+++++++
T Consensus       218 -------------------------------------------------------------~~~~v~~v~fspdg~~l~~  236 (365)
T 4h5i_A          218 -------------------------------------------------------------KNWSLSKINFIADDTVLIA  236 (365)
T ss_dssp             -------------------------------------------------------------TTEEEEEEEEEETTEEEEE
T ss_pred             -------------------------------------------------------------CCCCEEEEEEcCCCCEEEE
Confidence                                                                         3444555556666666665


Q ss_pred             Ee-CC----cEEEEEcCCCce----eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccce
Q 001224          842 AS-GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRI  911 (1120)
Q Consensus       842 ~s-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V  911 (1120)
                      ++ |+    .+++|++.....    ...+.+|...|++++|+| |+++||+|+.|++|+|||+.+++++..+ .+|...|
T Consensus       237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred             EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence            55 43    366666654432    345678899999999999 9999999999999999999999998875 7999999


Q ss_pred             EEEEEccCCCEEEEEeCCCCEEEEECCCc
Q 001224          912 TGLAFSHALNVLVSSGADSQLCVWSSDGW  940 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~  940 (1120)
                      ++|+|||||++||||+.|++|+||++...
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.7e-32  Score=305.16  Aligned_cols=203  Identities=14%  Similarity=0.109  Sum_probs=169.2

Q ss_pred             CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      +...+.+++|||||+++++++   |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence            556788999999999987654   7999999999999988886 777899999999 9999999885 467777777766


Q ss_pred             eeE--eecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224          900 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       900 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l  973 (1120)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++........ ......+|.   ..|++++|+|||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRF---KGITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSC---SCEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCC---CCeEeEEECCCCCce
Confidence            543  4567999999999999999999999887    588898876543221 122334444   379999999999999


Q ss_pred             EEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224          974 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       974 a~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      |++ .|+.|+|||+.+++++..+. .+|...|++++|||||++||+|+.|++|+|||+...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            995 88999999999999987753 389999999999999999999999999999999644

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-31  Score=291.16  Aligned_cols=285  Identities=14%  Similarity=0.188  Sum_probs=238.6

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      ....+.+|.+.|++++| ++++  +|++++.||.|++||+.+++....+..|...|.+++|++  ++.+|++++.||.|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~   84 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--EKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETT--EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--TTTEEEEEETTSCEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--CCCEEEEecCCCeEE
Confidence            34478999999999999 8988  799999999999999999999999999999999999975  457999999999999


Q ss_pred             EEecCCC---CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224          543 AWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       543 iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      +|++...   .....+..|...+.++.+                       +++.+++++.||.|++||  .++.+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~l~~~~~d~~i~~~d--~~~~~~~~~  139 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF-----------------------QDGVVISGSWDKTAKVWK--EGSLVYNLQ  139 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe-----------------------cCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence            9998764   334455555555555555                       235799999999999999  667777777


Q ss_pred             cCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224          620 ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  698 (1120)
Q Consensus       620 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1120)
                      .+.  ..+.+++|+| ++.++++++.||.|++||....   ...+                                   
T Consensus       140 ~~~--~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~-----------------------------------  179 (313)
T 3odt_A          140 AHN--ASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---IKTF-----------------------------------  179 (313)
T ss_dssp             CCS--SCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---EEEE-----------------------------------
T ss_pred             cCC--CceeEEEEccCCCCEEEEEECCCCEEEEecCce---EEEE-----------------------------------
Confidence            654  4789999988 9999999999999999983211   0000                                   


Q ss_pred             cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224          699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  778 (1120)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  778 (1120)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (313)
T 3odt_A          180 --------------------------------------------------------------------------------  179 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224          779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  857 (1120)
Q Consensus       779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~  857 (1120)
                            .                                   ..|...+.+++|+|++. +++++ ||.|++||+.+++.
T Consensus       180 ------~-----------------------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          180 ------S-----------------------------------GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV  217 (313)
T ss_dssp             ------C-----------------------------------SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred             ------e-----------------------------------ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence                  0                                   01556678888888888 66666 89999999999999


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          858 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       858 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      +..+.+|...|++++|+| ++ .|++|+.||.|++||+.+++.+..+..|...|++++|+|+++ +++++.||.|++||+
T Consensus       218 ~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          218 LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            999999999999999999 77 588999999999999999999999999999999999999998 667999999999999


Q ss_pred             CCccc
Q 001224          938 DGWEK  942 (1120)
Q Consensus       938 ~~~~~  942 (1120)
                      .+++.
T Consensus       295 ~~~~~  299 (313)
T 3odt_A          295 EKSRW  299 (313)
T ss_dssp             CGGGC
T ss_pred             CCCce
Confidence            98654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-30  Score=302.05  Aligned_cols=239  Identities=17%  Similarity=0.233  Sum_probs=199.0

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  445 (1120)
                      -++.|+||+++  +||+|. |++|+|||+.+|+.+...                 .+.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence            35789999865  688876 899999999999876531                 1457889999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCeEEEeec
Q 001224          446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~  524 (1120)
                      .||+|+|||+++++.+.   .+.+|...|.+++|+  +.  ++++|+.|+.+++||.... ..+.++.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999998766   688999999999885  45  7999999999999998864 5567889999999999985


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE--E
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A  598 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~--~  598 (1120)
                      +  ++.++++++.|+.+++|+....+.    ......+...|..++|+|++.                    ..+++  |
T Consensus       240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g  297 (420)
T 4gga_A          240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG  297 (420)
T ss_dssp             T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred             C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence            4  557999999999999999987543    334556667777777777665                    34554  4


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCc
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG  656 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~  656 (1120)
                      +.|+.|++||+.++++...+..+.   .+.++.|+++++.+++++  .|+.|++||+.++
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            579999999999999999887654   488999999999998876  6899999998765

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-32  Score=311.11  Aligned_cols=340  Identities=10%  Similarity=0.052  Sum_probs=219.4

Q ss_pred             cCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224          423 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       423 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~  502 (1120)
                      ..|.++|++++|+|+|++||+|+.|+.|+|||+.++. ......+.+|.+.|.+++|+|+++  +|++++.|+.|++||+
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC--
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEc
Confidence            3467799999999999999999999999999999873 112336889999999999999998  6999999999999999


Q ss_pred             CCCc---eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeC-CCCceeEEEEcCCCCeEE
Q 001224          503 TNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       503 ~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~~~~  575 (1120)
                      .++.   ....+.+|...|.+++|++  ++.+|++++.|+.|++||++..+.   ...+.. |...|.+++|        
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~--------  154 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW--------  154 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE--------
T ss_pred             CCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE--------
Confidence            9887   6778889999999999865  557999999999999999987653   344444 5555555555        


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                                   +|++++|++++.||.|++||+.+                  ++++..+   .+...|.+++|+|+++
T Consensus       155 -------------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          155 -------------HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             -------------CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSS
T ss_pred             -------------cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCC
Confidence                         45555899999999999999853                  3444444   3445799999999999


Q ss_pred             EEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccccc
Q 001224          638 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  717 (1120)
Q Consensus       638 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  717 (1120)
                      +|++++.||.|++||+.++......+                                                      
T Consensus       219 ~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------------------  244 (377)
T 3dwl_C          219 ALAYAGHDSSVTIAYPSAPEQPPRAL------------------------------------------------------  244 (377)
T ss_dssp             CEEEEETTTEEC-CEECSTTSCEEEC------------------------------------------------------
T ss_pred             EEEEEeCCCcEEEEECCCCCCcceee------------------------------------------------------
Confidence            99999999999999998762110000                                                      


Q ss_pred             CCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcc
Q 001224          718 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  797 (1120)
Q Consensus       718 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~  797 (1120)
                                                   ..+    .+|...|.+++|+|+++++++++.++.+ +|+..........  
T Consensus       245 -----------------------------~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~--  288 (377)
T 3dwl_C          245 -----------------------------ITV----KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTR--  288 (377)
T ss_dssp             -----------------------------CCE----ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSB--
T ss_pred             -----------------------------Eee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEe--
Confidence                                         000    2366789999999999988888766666 6655321110000  


Q ss_pred             ccccCceeecCCCCCccc-ccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec
Q 001224          798 TASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  875 (1120)
Q Consensus       798 ~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp  875 (1120)
                             .++........ .............++.|++....+.... .|...       ........|...|+++++.+
T Consensus       289 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~  354 (377)
T 3dwl_C          289 -------DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYA  354 (377)
T ss_dssp             -------CCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEEE
T ss_pred             -------eecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEeccC
Confidence                   00000000000 0000000112244444444433332221 12211       12223456999999999877


Q ss_pred             CCCc---EEEEEeCCCcEEEEEe
Q 001224          876 QDNN---IIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       876 ~d~~---~lasg~~dg~v~vwd~  895 (1120)
                      .++.   .|++|+.||.|++||+
T Consensus       355 ~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          355 GTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCceEEEEeecCCCcEEEecC
Confidence            3444   7999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-30  Score=300.36  Aligned_cols=298  Identities=15%  Similarity=0.214  Sum_probs=225.0

Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      .++.|+||++ ++||+|. |++|+|||..+|+... ...+.+|...|++|+|+|+|+  +|++|+.||.|+|||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            5678999986 4777775 9999999999998664 335678889999999999999  799999999999999999999


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc-eeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      +..+.+|...+.+++++    +.+|++|+.|+.+++||....... ..+..|...+..+.+                   
T Consensus       182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~-------------------  238 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW-------------------  238 (420)
T ss_dssp             EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-------------------
T ss_pred             EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeee-------------------
Confidence            99999999999988863    358999999999999998865433 344555555555554                   


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCce----eEEEecCCCCCCcCeEEEcCCC-CEEEEE--ECCCcEEEEEccCcchh
Q 001224          587 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL  659 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~  659 (1120)
                        +|++.++++++.|+.+++|+..+++.    +.....+  ...|.+++|+|++ .+++++  +.|++|++||+.++. .
T Consensus       239 --~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~  313 (420)
T 4gga_A          239 --APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C  313 (420)
T ss_dssp             --CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred             --cCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence              44555899999999999999987653    3444433  4478999999954 455554  468999999876651 1


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                      ...+                                                                            
T Consensus       314 ~~~~----------------------------------------------------------------------------  317 (420)
T 4gga_A          314 LSAV----------------------------------------------------------------------------  317 (420)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             ceee----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (420)
T 4gga_A          318 --------------------------------------------------------------------------------  317 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                        .+...+.++.|+++++.+++++   |+.|+|||+.+++++.++.+|...|++++|+| |+++||+|+.||+|+|||+.
T Consensus       318 --~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          318 --DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             --ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred             --ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence              0233466777888888877653   78999999999999999999999999999999 99999999999999999998


Q ss_pred             cceeeEeecccccceEEEEEc
Q 001224          897 VDEVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s  917 (1120)
                      ..........+...+....|.
T Consensus       395 ~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          395 ELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             CSSCC----------------
T ss_pred             CCCccchhhhccCCccccccC
Confidence            766666655555554444443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.4e-30  Score=286.09  Aligned_cols=282  Identities=18%  Similarity=0.262  Sum_probs=216.2

Q ss_pred             eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224          429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  508 (1120)
Q Consensus       429 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~  508 (1120)
                      .++|+||+++ +||+| .|++|+|||+++++.++ ...+.+|...|++++|+|+++  ++++|+.|++|++||+.+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence            5789999986 77766 49999999999998764 335668889999999999999  7999999999999999999999


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  588 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~  588 (1120)
                      ..+.+|...+.++.+.    +..+++++.++.+++|+.....                                      
T Consensus       103 ~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~--------------------------------------  140 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE--------------------------------------  140 (318)
T ss_dssp             EEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS--------------------------------------
T ss_pred             EEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCc--------------------------------------
Confidence            9999999888766542    2467777777777666554311                                      


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccc
Q 001224          589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       589 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                                              ..+..+..|  ...+..+.++++++++++++.|+.|++||+.++........    
T Consensus       141 ------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----  190 (318)
T 4ggc_A          141 ------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----  190 (318)
T ss_dssp             ------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE----
T ss_pred             ------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee----
Confidence                                    122333333  33678899999999999999999999999876621100000    


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                                     .
T Consensus       191 -------------------------------------------------------------------------------~  191 (318)
T 4ggc_A          191 -------------------------------------------------------------------------------T  191 (318)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           0


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCcc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  828 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~  828 (1120)
                      .    ..                                                                   +...|.
T Consensus       192 ~----~~-------------------------------------------------------------------~~~~v~  200 (318)
T 4ggc_A          192 F----TQ-------------------------------------------------------------------HQGAVK  200 (318)
T ss_dssp             E----CC-------------------------------------------------------------------CCSCEE
T ss_pred             e----cc-------------------------------------------------------------------cCCceE
Confidence            0    00                                                                   334445


Q ss_pred             EEEEccCCCEE---EEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeE
Q 001224          829 CFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       829 ~l~~s~d~~~l---~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~  902 (1120)
                      +++++|++..+   ++++ +++|++||........... +...+..+.|+| ++..+++++  .||.|++||+.+++++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~  278 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVA  278 (318)
T ss_dssp             EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             EEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEE
Confidence            55555544432   2334 6889999988877665554 667799999999 666666544  79999999999999999


Q ss_pred             eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC
Q 001224          903 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      .+.+|.+.|++|+|+|||++|+||+.||+|+|||+..
T Consensus       279 ~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            9999999999999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=9e-31  Score=286.80  Aligned_cols=253  Identities=12%  Similarity=0.101  Sum_probs=205.4

Q ss_pred             CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC--CceeeeecCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEeec
Q 001224          822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      +|...|.+++|+|+|++|++|+ |++|++||+..  .+.+.++.+|...|.+++|+++ ++++||+|+.||+|++||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            3999999999999999999999 99999999974  4677899999999999999862 488999999999999999988


Q ss_pred             ce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----  969 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----  969 (1120)
                      ++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||+.++.....   ....+|.   ..|.+++|+|+    
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE  160 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence            74  56778899999999999998  89999999999999999987532211   2233444   37899999997    


Q ss_pred             ---------CcEEEE-EeCCeEEEEEcCCce----eeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCC
Q 001224          970 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       970 ---------g~~la~-~~d~~v~i~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                               +++|++ +.|+.|++||+.+++    ....+  .+|...|.+++|+|++   .+|++++.|++|+|||+.+
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                     568888 589999999998765    33444  4899999999999995   8999999999999999987


Q ss_pred             cce--eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 001224         1033 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1091 (1120)
Q Consensus      1033 ~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1091 (1120)
                      +..  ...+.    ...+| ...+.  +++|+| ++++|++++.||.|++|+.... +.|.
T Consensus       239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~  290 (297)
T 2pm7_B          239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE  290 (297)
T ss_dssp             TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred             CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence            532  11111    01122 22355  899999 6899999999999999998642 3444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.9e-31  Score=300.43  Aligned_cols=289  Identities=15%  Similarity=0.178  Sum_probs=221.8

Q ss_pred             cCCCCc--eEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          423 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       423 ~~h~~~--V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      .+|...  +.+++|+  +..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++|
T Consensus        88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw  161 (401)
T 4aez_A           88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY  161 (401)
T ss_dssp             TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence            355555  4445555  467888999999999999998865421  223889999999999999  79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      |+.+++.+..+.+|...|.+++|.    +.++++++.||.|++||++. ......+..|...|.+++|+|++        
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------  229 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG--------  229 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred             ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence            999999999999999999999983    35899999999999999984 34445555566555555555554        


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCc
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDG  656 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~  656 (1120)
                                   ++|++++.||.|++||+.+++.+..+..+.  ..|.+++|+|++. ++++++  .|+.|++||+.++
T Consensus       230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             -------------SEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             -------------CEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence                         589999999999999999999988887554  4799999999764 555554  6999999998655


Q ss_pred             chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                       .....+                                                                         
T Consensus       295 -~~~~~~-------------------------------------------------------------------------  300 (401)
T 4aez_A          295 -ARVNTV-------------------------------------------------------------------------  300 (401)
T ss_dssp             -CEEEEE-------------------------------------------------------------------------
T ss_pred             -CEEEEE-------------------------------------------------------------------------
Confidence             110000                                                                         


Q ss_pred             cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224          737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                                                                                      
T Consensus       301 --------------------------------------------------------------------------------  300 (401)
T 4aez_A          301 --------------------------------------------------------------------------------  300 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEE--Ee-CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  891 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~--~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~  891 (1120)
                           .+...+.+++|+|+++++++  |+ ||.|++||+.+++..  ..+.+|...|.+++|+| ++++|++|+.||.|+
T Consensus       301 -----~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          301 -----DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK  374 (401)
T ss_dssp             -----ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred             -----eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence                 02344667777777777777  33 678888888775443  34678999999999999 999999999999999


Q ss_pred             EEEeecceeeEee
Q 001224          892 IYNVRVDEVKSKL  904 (1120)
Q Consensus       892 vwd~~~~~~~~~l  904 (1120)
                      +|++.+++.+...
T Consensus       375 iw~~~~~~~~~~~  387 (401)
T 4aez_A          375 FWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECCC-------
T ss_pred             EEECCCCcccccc
Confidence            9999998876554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=1.3e-31  Score=296.31  Aligned_cols=253  Identities=16%  Similarity=0.201  Sum_probs=201.6

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--CCC
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  439 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~  439 (1120)
                      +|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++....                 ..+.+|.+.|.+++|+|  +++
T Consensus        11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~   72 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN   72 (316)
T ss_dssp             ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred             cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence            5999999999999999 599999999999999988753211                 03778999999999986  489


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCce---eEEeecc
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH  514 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h  514 (1120)
                      +||+|+.|++|+|||++++... ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+..+..   ...+.+|
T Consensus        73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            9999999999999999987422 23367899999999999998  55  799999999999999987632   3456789


Q ss_pred             ccCeEEEeeccCC---------------CceEEEEEecCCeEEEEecCCCC---CceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          515 EAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       515 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      ...|.+++|++..               ++.+|++|+.|++|++||++...   ....+..|...|.+++|+|++.    
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~----  225 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG----  225 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS----
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC----
Confidence            9999999987652               14689999999999999997542   3445666777777777777651    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc----eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                                   .++.+|++++.||+|++|++.+..    ....+..+  ...|.+++|+|++++|++++.|++|++|+
T Consensus       226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence                         012579999999999999997631    12233333  34799999999999999999999999999


Q ss_pred             cc
Q 001224          653 TS  654 (1120)
Q Consensus       653 ~~  654 (1120)
                      ..
T Consensus       291 ~~  292 (316)
T 3bg1_A          291 ES  292 (316)
T ss_dssp             EC
T ss_pred             EC
Confidence            75

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.2e-30  Score=302.92  Aligned_cols=273  Identities=12%  Similarity=0.201  Sum_probs=201.7

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC------------Cc
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS  428 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~  428 (1120)
                      +.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.......        ........+.+|.            +.
T Consensus        25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence            45789999999999999 599999999999999998763110000        0000111467888            88


Q ss_pred             eEEEEEcCCC--CeEEEEECCCeEEEEEccCCceee------------------------------------eeee-ecc
Q 001224          429 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA  469 (1120)
Q Consensus       429 V~~l~~spdg--~~las~~~dg~v~iwd~~~~~~~~------------------------------------~~~~-l~~  469 (1120)
                      |.+++|+|++  .+|++++.|++|++||+.++....                                    .... +.+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  899999999999999998754311                                    0012 368


Q ss_pred             cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-CceeE-------EeeccccCeEEEeeccCCCceEEEEEecCCeE
Q 001224          470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  541 (1120)
Q Consensus       470 h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  541 (1120)
                      |...|.+++|+|+++  +|++| .|+.|++||+.+ +..+.       .+.+|...|.+++|+++.. .+|++|+.||.|
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence            999999999999999  78888 799999999984 44444       2568999999999975431 699999999999


Q ss_pred             EEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeE
Q 001224          542 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT  616 (1120)
Q Consensus       542 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~  616 (1120)
                      ++||+++...    ...+..+.....        ...+ ......+..++|+|++.+|++++. +.|++||+.+ ++.+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSN--------RSFF-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-------------CCHH-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             EEEECcCCccccceeeEeccCCCccc--------cccc-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            9999998765    444544443000        0000 001124556666666678999998 9999999997 88888


Q ss_pred             EEecCCCCCC-------------cCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          617 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       617 ~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .+..+.....             +..++|+|++++|++|+.||.|++||+.++
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            8876643111             234999999999999999999999999887

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=4.9e-31  Score=291.65  Aligned_cols=225  Identities=19%  Similarity=0.300  Sum_probs=175.1

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  498 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~  498 (1120)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++  ++  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            57799999999999999999999999999999999987532 23468899999999999864  66  699999999999


Q ss_pred             EEECCCCc--eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCC---ceeeeCCCCceeEEEEcCCCCe
Q 001224          499 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       499 vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      +||++++.  .+..+.+|...|.+++|+++.++.+|++|+.|++|++||+.....   ...+..|...+.+++|+|++..
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99999874  567888999999999998876678999999999999999987532   2344567778888899887530


Q ss_pred             E-EecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEEecCCCCCCcCeEEEcCCC----CEEEEEECC
Q 001224          574 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND  645 (1120)
Q Consensus       574 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d  645 (1120)
                      - +..+..+     ....++.+|++++.|+.|++||+..+   +.+..+..|  ...|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence            0 0000000     01122468999999999999999755   345555544  4579999999986    899999999


Q ss_pred             CcEEEEEccC
Q 001224          646 NGIKILATSD  655 (1120)
Q Consensus       646 g~i~iwd~~~  655 (1120)
                      ++|++|++.+
T Consensus       238 ~~v~iw~~~~  247 (316)
T 3bg1_A          238 GRVFIWTCDD  247 (316)
T ss_dssp             CEEEEEECSS
T ss_pred             CeEEEEEccC
Confidence            9999999865

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=5.3e-30  Score=288.52  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=180.6

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCcee-eeeeeecccccCeEEEEEcC--CCCceEEEEecCCCcE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI  497 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~s~d~~i  497 (1120)
                      ++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+|  +++  +|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            57899999999999999999999999999999999976422 33446789999999999999  577  79999999999


Q ss_pred             EEEECCCC---------ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224          498 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  568 (1120)
Q Consensus       498 ~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  568 (1120)
                      ++||+.++         +.+..+.+|...|.+++|++..++.+|++++.||.|++||+.+......+... ..+..+.+.
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence            99999987         56788899999999999977633679999999999999999987665443211 011111111


Q ss_pred             CCCCeEEecccccceeEEEEcCC---CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCC----CEEEE
Q 001224          569 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV  641 (1120)
Q Consensus       569 ~~g~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~  641 (1120)
                      +.       .....+.+++|+|+   +..+++++.++.+.+|+...++.........+...|.+++|+|++    ++|++
T Consensus       163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence            11       12335667777776   789999999999999988887763333333445689999999998    89999


Q ss_pred             EECCCcEEEEEccCc
Q 001224          642 STNDNGIKILATSDG  656 (1120)
Q Consensus       642 ~~~dg~i~iwd~~~~  656 (1120)
                      ++.||.|++||+.++
T Consensus       236 ~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          236 GCKDGRIRIFKITEK  250 (351)
T ss_dssp             EETTSCEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCC
Confidence            999999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=9.1e-30  Score=285.90  Aligned_cols=294  Identities=13%  Similarity=0.100  Sum_probs=230.0

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      +..+|.+.|++++|+|++++|++++.|+.|+||++.++........+.+|...|.+++|+|+++. ++++|+.||.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence            35689999999999999999999999999999999988722223346689999999999999882 38999999999999


Q ss_pred             EC-CCCceeEEeec--cccCeEEEeeccCCCceEEEEEecCCeEEEEecCC---------CCCceeeeCCCCceeEEEEc
Q 001224          501 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS  568 (1120)
Q Consensus       501 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s  568 (1120)
                      |+ .+++. ..+.+  |...|.+++|++   +.++++++.|+.|++||+++         ......+. +...       
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-------  152 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK-------  152 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC-------
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCc-------
Confidence            99 77755 77888  999999999976   47999999999999999886         44443333 3333       


Q ss_pred             CCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCC
Q 001224          569 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN  646 (1120)
Q Consensus       569 ~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  646 (1120)
                                    +.+++++|++  +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus       153 --------------v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          153 --------------IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             --------------EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             --------------eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence                          4445555554  89999999999999998 65432222223345799999999 999999999999


Q ss_pred             cEEEEEccCcc-----hhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCc
Q 001224          647 GIKILATSDGI-----RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  721 (1120)
Q Consensus       647 ~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  721 (1120)
                      .|++|++....     .....+..                                                        
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  240 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRC--------------------------------------------------------  240 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEEC--------------------------------------------------------
T ss_pred             cEEEEEEcCCCcccccccceeeec--------------------------------------------------------
Confidence            99999986540     00000000                                                        


Q ss_pred             ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCcccccc
Q 001224          722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  801 (1120)
Q Consensus       722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  801 (1120)
                                                        |...                                          
T Consensus       241 ----------------------------------~~~~------------------------------------------  244 (342)
T 1yfq_A          241 ----------------------------------HRLN------------------------------------------  244 (342)
T ss_dssp             ----------------------------------CCCC------------------------------------------
T ss_pred             ----------------------------------cccc------------------------------------------
Confidence                                              0000                                          


Q ss_pred             CceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC-CCCeEEEEEecCCCc
Q 001224          802 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN  879 (1120)
Q Consensus       802 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~  879 (1120)
                                      ..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++  | +++
T Consensus       245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~  305 (342)
T 1yfq_A          245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN  305 (342)
T ss_dssp             ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred             ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence                            00012677899999999999999998 899999999999999999998 99999999  8 899


Q ss_pred             EEEEEeCCCc-EEEEE
Q 001224          880 IIAIGMDDSS-IQIYN  894 (1120)
Q Consensus       880 ~lasg~~dg~-v~vwd  894 (1120)
                      +|++|+.||. .+.|.
T Consensus       306 ~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          306 ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECTHHHHCSS
T ss_pred             eEEEEecCCccccccc
Confidence            9999999998 44433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.8e-30  Score=288.82  Aligned_cols=300  Identities=16%  Similarity=0.153  Sum_probs=234.3

Q ss_pred             cccCCCCceEEEEEcCC---CCeEEEEECCCeEEEEEccC-CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc
Q 001224          421 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  496 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spd---g~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~  496 (1120)
                      ++.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.  ..+.+|.+.|.+++|+|+++  +|++++.|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence            47899999999999999   69999999999999999997 44331  35778999999999999999  7999999999


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      |++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.        
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--------  179 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--------  179 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence            9999999998776 5569999999999777788899999999999999999877766665543 22222222        


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCE----EEEEECCCcEEEEE
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA  652 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd  652 (1120)
                                     ...+++++.++.+++|++...................++++.++...    +++++.||.|++|+
T Consensus       180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence                           23688899999999999988765544433333335666777665554    99999999999999


Q ss_pred             ccCcch--hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC
Q 001224          653 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  730 (1120)
Q Consensus       653 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  730 (1120)
                      +.....  ....+.+|..                                                              
T Consensus       245 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  262 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRS--------------------------------------------------------------  262 (368)
T ss_dssp             SSCSCHHHHSEEEECSEE--------------------------------------------------------------
T ss_pred             cCCCCccccceeeeeeec--------------------------------------------------------------
Confidence            876521  0111110000                                                              


Q ss_pred             cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCC
Q 001224          731 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  810 (1120)
Q Consensus       731 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~  810 (1120)
                                                  ..         .  .                                     
T Consensus       263 ----------------------------~~---------~--~-------------------------------------  266 (368)
T 3mmy_A          263 ----------------------------NG---------T--N-------------------------------------  266 (368)
T ss_dssp             ----------------------------C---------------------------------------------------
T ss_pred             ----------------------------cc---------c--c-------------------------------------
Confidence                                        00         0  0                                     


Q ss_pred             CCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCc
Q 001224          811 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  889 (1120)
Q Consensus       811 g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~  889 (1120)
                             .....|...|.+++|+|++++|++++ ||.|++||+.+++.+..+..|...|++++|+| ++++||+|+.|+.
T Consensus       267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~  338 (368)
T 3mmy_A          267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW  338 (368)
T ss_dssp             --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred             -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence                   00011556789999999999999998 99999999999999999999999999999999 9999999999886


Q ss_pred             EEEEEe
Q 001224          890 IQIYNV  895 (1120)
Q Consensus       890 v~vwd~  895 (1120)
                      .+.|++
T Consensus       339 ~~~~~~  344 (368)
T 3mmy_A          339 SKGHEF  344 (368)
T ss_dssp             TTCGGG
T ss_pred             cccccc
Confidence            555544

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=6.2e-29  Score=275.87  Aligned_cols=282  Identities=17%  Similarity=0.282  Sum_probs=229.2

Q ss_pred             EEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEE
Q 001224          760 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  839 (1120)
Q Consensus       760 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l  839 (1120)
                      ...++||+++  +++++.|+.|+|||+                      .+|+.+.. +...+|...|.+++|+|+++++
T Consensus        28 ~~~l~WS~~~--~lAvg~D~tV~iWd~----------------------~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l   82 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVALDNSVYLWSA----------------------SSGDILQL-LQMEQPGEYISSVAWIKEGNYL   82 (318)
T ss_dssp             CBCEEECTTS--EEEEEETTEEEEEET----------------------TTCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred             ceEEEECCCC--EEEEEeCCEEEEEEC----------------------CCCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence            4568999886  445566999999876                      34433221 2223488899999999999999


Q ss_pred             EEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeEeecccccceEEEEEc
Q 001224          840 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS  917 (1120)
Q Consensus       840 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~s  917 (1120)
                      ++|+ ||+|++||+.+++.+..+.+|...+.++.+.   +.++++|+.++.+++|+.... ..+..+.+|...+..+.++
T Consensus        83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (318)
T 4ggc_A           83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  159 (318)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence            9999 9999999999999999999999888876654   579999999999999998765 5567789999999999999


Q ss_pred             cCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE---E-eCCeEEEEEcCCceeee
Q 001224          918 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECVK  993 (1120)
Q Consensus       918 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~---~-~d~~v~i~d~~~~~~~~  993 (1120)
                      +++++|++++.|++|++||+.+++........ ...+.   ..|..++++|++..++.   + .++.|++||........
T Consensus       160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~  235 (318)
T 4ggc_A          160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  235 (318)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred             CCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence            99999999999999999999987654332222 22222   47899999998664442   2 57899999999888766


Q ss_pred             ccccCCCCCCeeEEEECCCCcEEEEEE--cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          994 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       994 ~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      ..   .|...+..+.|+|++..+++++  .|+.|+|||+.+++.+..+.       +|.+. |.  +++|+| |+++|++
T Consensus       236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S  301 (318)
T 4ggc_A          236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS  301 (318)
T ss_dssp             EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred             cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence            54   4577899999999999888765  79999999999999999887       55443 66  899999 6899999


Q ss_pred             EeCCCcEEEEecCCCC
Q 001224         1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
                      |+.||+|+|||+.+.+
T Consensus       302 ~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          302 AAADETLRLWRCFELD  317 (318)
T ss_dssp             EETTTEEEEECCSCCC
T ss_pred             EecCCeEEEEECCCCC
Confidence            9999999999997754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.3e-29  Score=292.56  Aligned_cols=233  Identities=20%  Similarity=0.337  Sum_probs=203.6

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      +|...|+|++|  +++ ++++|+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|  ++++|
T Consensus       131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI  186 (435)
T ss_dssp             SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence            47788998887  777 59999999999999999988776                   37789999999999  88999


Q ss_pred             EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee---EEeeccccCe
Q 001224          442 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV  518 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~h~~~v  518 (1120)
                      ++|+.||.|++||+.+++.+.   .+.+|...|.+++|++  .  ++++|+.|+.|++||+.++..+   ..+.+|...|
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            999999999999999998665   6789999999999974  3  6999999999999999988766   6788999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .++++    ++.++++|+.||.|++||+.+......+..|...+.++.+.                       ++++++|
T Consensus       260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g  312 (435)
T 1p22_A          260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG  312 (435)
T ss_dssp             EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred             EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence            99997    34699999999999999999988887777777767666652                       2479999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.||.|++||+.+++.+..+..|.  ..|.+++|  ++.+|++|+.||.|++||+.++
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            999999999999999999998664  47888888  7899999999999999998655

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=7.4e-30  Score=286.66  Aligned_cols=245  Identities=9%  Similarity=0.011  Sum_probs=202.8

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC-e
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L  440 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~  440 (1120)
                      +|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.....                ..+.+|...|.+++|+|+++ +
T Consensus         9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence            5899999999999999 5899999999999999887621100                02447999999999999999 9


Q ss_pred             EEEEECCCeEEEEEc-cCCceeeeeeeecc--cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC---------Ccee
Q 001224          441 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ  508 (1120)
Q Consensus       441 las~~~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~---------~~~~  508 (1120)
                      |++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| +.  ++++++.|+.|++||+.+         ++++
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            999999999999999 88764    25778  999999999999 77  799999999999999988         7777


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCce--eeeCCCCceeEEEEcCCCCeEEecccccceeE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  585 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~  585 (1120)
                      ..+. |...|.+++|++  +  .+++++.|+.|++||++. .....  ....+..                     .+.+
T Consensus       145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------------~i~~  198 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------------QIRD  198 (342)
T ss_dssp             SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------------CEEE
T ss_pred             eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCC---------------------ceeE
Confidence            7777 889999999864  3  299999999999999987 44321  2222333                     4455


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEECCCC------ceeEEEecCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001224          586 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL  651 (1120)
Q Consensus       586 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw  651 (1120)
                      ++|+| +++++++++.||.|++|+++..      +....+..+..       ...|.+++|+|++++|++++.||.|++|
T Consensus       199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            55666 6668999999999999999887      77788876643       3379999999999999999999999999


Q ss_pred             EccCc
Q 001224          652 ATSDG  656 (1120)
Q Consensus       652 d~~~~  656 (1120)
                      |+.++
T Consensus       279 d~~~~  283 (342)
T 1yfq_A          279 NLQTR  283 (342)
T ss_dssp             ETTTT
T ss_pred             cCccH
Confidence            98776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=286.35  Aligned_cols=254  Identities=17%  Similarity=0.196  Sum_probs=199.4

Q ss_pred             ceeeec-cCCCCceEEEEecC---CCeEEEEEeCCCcEEEEecCC-CceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          356 TVTRTL-NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       356 ~~~~~~-~h~~~v~~v~~spd---g~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      .....+ +|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ ++.+..                  .+.+|...|.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~   90 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVL   90 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEE
Confidence            334444 59999999999999   46 699999999999999998 444321                  3667999999


Q ss_pred             EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEE--cCCCCceEEEEecCCCcEEEEECCCCcee
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQ  508 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~s~d~~i~vwd~~~~~~~  508 (1120)
                      +++|+|++++|++++.||.|++||+.+++.+.    +.+|...|.+++|  ++++.  ++++++.|+.|++||+++++.+
T Consensus        91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~  164 (368)
T 3mmy_A           91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPM  164 (368)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCS
T ss_pred             EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEE
Confidence            99999999999999999999999999987554    5679999999999  88888  7999999999999999999999


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC--CCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      ..+..|. .+.++.+.  .  ..+++++.++.+++|+++..........  .......+.+.+++..             
T Consensus       165 ~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  226 (368)
T 3mmy_A          165 MVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-------------  226 (368)
T ss_dssp             EEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-------------
T ss_pred             EEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-------------
Confidence            9998765 56666653  2  3788889999999999987544332211  1122222322222210             


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCC---ceeEEEecCCCC----------CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          587 QFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                          ....+++++.||.|++||+...   ..+..+..+...          ..|.+++|+|++++|++++.||.|++||+
T Consensus       227 ----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          227 ----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             ----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence                0123999999999999999987   556666655321          15899999999999999999999999998


Q ss_pred             cCc
Q 001224          654 SDG  656 (1120)
Q Consensus       654 ~~~  656 (1120)
                      .++
T Consensus       303 ~~~  305 (368)
T 3mmy_A          303 DAR  305 (368)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            766

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.5e-29  Score=292.25  Aligned_cols=276  Identities=21%  Similarity=0.317  Sum_probs=228.7

Q ss_pred             ecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec
Q 001224          467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  546 (1120)
Q Consensus       467 l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  546 (1120)
                      ..+|...|.+++|  +++  ++++|+.||.|++||+.+++.+..+.+|.+.|.+++|    ++.+|++|+.||.|++||+
T Consensus       129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence            4467788999987  677  7999999999999999999999999999999999987    4479999999999999999


Q ss_pred             CCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEEecCCC
Q 001224          547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG  623 (1120)
Q Consensus       547 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~  623 (1120)
                      .+++....+..|...|.++++++                       +.+++++.||.|++||+.++...   ..+..+  
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--  255 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH--  255 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence            99888777777777777776642                       36999999999999999988765   444444  


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224          624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  703 (1120)
Q Consensus       624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1120)
                      ...|.+++|  +++++++|+.||.|++||+.++ +....+                                        
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~----------------------------------------  292 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTL----------------------------------------  292 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEE----------------------------------------
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEE----------------------------------------
Confidence            447888888  7889999999999999998655 111000                                        


Q ss_pred             ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224          704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  783 (1120)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v  783 (1120)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (435)
T 1p22_A          293 --------------------------------------------------------------------------------  292 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224          784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~  862 (1120)
                                                         .  +|...|.++++  +++++++|+ ||.|++||+.+++.+..+.
T Consensus       293 -----------------------------------~--~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          293 -----------------------------------N--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             -----------------------------------E--CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             -----------------------------------c--CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence                                               0  15556677777  467888888 8999999999999999999


Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeEeecccccceEEEEEccCCCEEEEEeCCCCEE
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  933 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~  933 (1120)
                      +|...|.+++|   ++.+|++|+.||.|++||+.+++         ++..+.+|.+.|++++|  ++.+|++++.||+|+
T Consensus       334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~  408 (435)
T 1p22_A          334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL  408 (435)
T ss_dssp             CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred             CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence            99999999998   46799999999999999998876         78899999999999999  788999999999999


Q ss_pred             EEECCCccc
Q 001224          934 VWSSDGWEK  942 (1120)
Q Consensus       934 iWd~~~~~~  942 (1120)
                      +||+.+...
T Consensus       409 iwd~~~~~~  417 (435)
T 1p22_A          409 IWDFLNDPA  417 (435)
T ss_dssp             EEC------
T ss_pred             EEECCCCCC
Confidence            999988543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=294.24  Aligned_cols=306  Identities=13%  Similarity=0.138  Sum_probs=224.1

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC-cccccCCCCCCC----------
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE----------  824 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~----------  824 (1120)
                      +...|.+++|+|+|++|++++.||.|++|++.........             ..+. .....+.+  |.          
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~--h~~~~~~~~~~~   91 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQS--HEPEFDYLKSLE   91 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccc--cccccccccccc
Confidence            6789999999999999999999999999998643211000             0000 01111222  65          


Q ss_pred             --CCccEEEEccCC--CEEEEEe-CCcEEEEEcCCCcee---------------------------------------ee
Q 001224          825 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT  860 (1120)
Q Consensus       825 --~~v~~l~~s~d~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~  860 (1120)
                        ..|.+++|+|++  .++++++ |++|++||+.++...                                       ..
T Consensus        92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence              889999999998  7888888 999999998764431                                       12


Q ss_pred             -ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeE-------eecccccceEEEEEccCC-CEEEEEeCCC
Q 001224          861 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS  930 (1120)
Q Consensus       861 -~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg  930 (1120)
                       ..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+.       .+.+|...|++++|+|++ .+|++|+.||
T Consensus       172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence             367999999999999 89999998 799999999984 44444       367899999999999998 9999999999


Q ss_pred             CEEEEECCCcccccceeeeccCCCCCC---------CCCCcEEEEccCCcEEEEEeCCeEEEEEcCC-ceeeeccccCCC
Q 001224          931 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 1000 (1120)
Q Consensus       931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~fspdg~~la~~~d~~v~i~d~~~-~~~~~~~~~~~h 1000 (1120)
                      +|++||+.+++.... ......++...         ...|.+++|+|+|++|+++.++.|++||+.+ ++++..+.  +|
T Consensus       250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~  326 (447)
T 3dw8_B          250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH  326 (447)
T ss_dssp             CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred             eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence            999999998653211 12222333210         0268999999999999997669999999997 77777765  44


Q ss_pred             CCC---------------eeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc------ccC------CC-----
Q 001224         1001 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLP------AG----- 1048 (1120)
Q Consensus      1001 ~~~---------------v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~------~~~------~g----- 1048 (1120)
                      ...               +..++|+|++++|++|+.||.|+|||+.+++.+.......      ..+      .+     
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            321               3359999999999999999999999999998764221100      000      00     


Q ss_pred             -----CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1049 -----VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1049 -----~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                           .....-.++.++|+| ++++|++++.++ +++|.-
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence                 000011234899999 589999998776 777753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-29  Score=287.01  Aligned_cols=256  Identities=16%  Similarity=0.203  Sum_probs=208.3

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCC--CceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      +-+|.+.|++++|+|+++ +|++|+.||.|+|||+..  ++.+.                   .+.+|...|++++|+|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~   66 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   66 (379)
T ss_dssp             EEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred             ecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence            445999999999999999 499999999999999984  33332                   36789999999999987


Q ss_pred             --CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCc--eeEEe
Q 001224          438 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  511 (1120)
Q Consensus       438 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~  511 (1120)
                        +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ....+
T Consensus        67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~  143 (379)
T 3jrp_A           67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII  143 (379)
T ss_dssp             GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred             CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence              999999999999999999998622 33367789999999999999  78  79999999999999999873  44567


Q ss_pred             eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEEe
Q 001224          512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      .+|...|.+++|++..           ++.++++++.||.|++||++.....    ..+..|...|.+++|+|++.    
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----  219 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----  219 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC----
Confidence            7899999999997742           5689999999999999999876543    23444555555555555510    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                                    .+++|++++.||.|++||+.++.   ....+....+...+.+++|+|++++|++++.||.|++|++
T Consensus       220 --------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          220 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             --------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence                          04589999999999999998875   2333333335567999999999999999999999999998


Q ss_pred             cCc
Q 001224          654 SDG  656 (1120)
Q Consensus       654 ~~~  656 (1120)
                      ..+
T Consensus       286 ~~~  288 (379)
T 3jrp_A          286 NLE  288 (379)
T ss_dssp             EET
T ss_pred             CCC
Confidence            754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=7.8e-30  Score=293.27  Aligned_cols=252  Identities=15%  Similarity=0.228  Sum_probs=201.3

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-CCCeEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVA  444 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~  444 (1120)
                      ....++++|+...++++|+.||.|+||++.......               .....+.+|.+.|.+++|+| ++++||+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~  100 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIASG  100 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence            445689999988777788999999999996643321               01114778999999999999 99999999


Q ss_pred             ECCCeEEEEEccCCcee----eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--eccccCe
Q 001224          445 YSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPV  518 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--~~h~~~v  518 (1120)
                      +.||.|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...|
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            99999999999987421    233468899999999999999844 7999999999999999999999999  8899999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      .+++|++  ++.+|++++.||.|++||+++......+ ..|...                    .+..+.|+|++.+|++
T Consensus       180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~  237 (402)
T 2aq5_A          180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--------------------RPVHAVFVSEGKILTT  237 (402)
T ss_dssp             EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS--------------------SCCEEEECSTTEEEEE
T ss_pred             EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC--------------------cceEEEEcCCCcEEEE
Confidence            9999965  5579999999999999999886655554 333332                    2444555555567888


Q ss_pred             E---eCCCeEEEEECCCCce-eEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCc
Q 001224          598 A---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDG  656 (1120)
Q Consensus       598 ~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  656 (1120)
                      |   +.|+.|++||+.+++. +..... .+...+.+++|+|++++|+++ +.||.|++|++.++
T Consensus       238 g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          238 GFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             eccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            8   7899999999998765 333332 233468999999999999754 47999999999876

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.9e-29  Score=282.46  Aligned_cols=260  Identities=10%  Similarity=0.128  Sum_probs=208.5

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC--C
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  437 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--d  437 (1120)
                      ..+|.+.|++++|+|+++ +|++|+.||.|+|||+.++......               ...+.+|...|.+++|+|  |
T Consensus         7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d   70 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY   70 (351)
T ss_dssp             ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred             CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence            446999999999999999 5999999999999999876432110               013678999999999999  6


Q ss_pred             CCeEEEEECCCeEEEEEccCCce------eeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCCceeE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      +++|++|+.||.|++||+.+++.      ......+.+|.+.|.+++|+|+  +.  ++++++.|+.|++||+.+++.+.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence            99999999999999999998632      1334468899999999999999  88  79999999999999999887654


Q ss_pred             Eee-------------ccccCeEEEeeccC-CCceEEEEEecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCe
Q 001224          510 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       510 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      .+.             +|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            433             68889999999775 1357999999999998887766543  3444556666666666665510


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----------------------------------------  612 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------------------------  612 (1120)
                                       .+++|++++.||.|++||+.++                                         
T Consensus       229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence                             0047999999999999999865                                         


Q ss_pred             -----ceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          613 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       613 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                           +.+..+..|  ...|.+++|+|++++|++++.||.|++|++.++
T Consensus       292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                 445555544  447999999999999999999999999999876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=7.5e-29  Score=285.10  Aligned_cols=286  Identities=15%  Similarity=0.128  Sum_probs=226.4

Q ss_pred             EEEEcCCCceEEE-eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc-CCCEE
Q 001224          762 RLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYV  839 (1120)
Q Consensus       762 ~l~~s~~g~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~-d~~~l  839 (1120)
                      .++++|+...+++ ++.+|.|++|++.......                  . ....+.  +|...|.+++|+| ++++|
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~l   97 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNVI   97 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTEE
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCEE
Confidence            4778888766554 6778999999974321100                  0 000122  3899999999999 99999


Q ss_pred             EEEe-CCcEEEEEcCCC-------ceeeeecCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEeecceeeEee--cccc
Q 001224          840 MSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGHS  908 (1120)
Q Consensus       840 ~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~  908 (1120)
                      ++|+ ||+|++||+.++       +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+  .+|.
T Consensus        98 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A           98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             EEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred             EEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence            9999 999999999987       56788899999999999999 65 79999999999999999999999999  8999


Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc-CCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEE
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI  983 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspdg~~la~~----~d~~v~i  983 (1120)
                      ..|++++|+|++++|++++.|+.|++||+.+++.     +... .+|..  ..+..++|+|++.+|+++    .|+.|++
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-----VAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL  249 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCce-----eeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence            9999999999999999999999999999998543     2222 34432  247999999999999997    6899999


Q ss_pred             EEcCCceeeeccccCCCCCCeeEEEECCCCcEEEE-EEcCCcEEEEEcCCcce-eeeeCCCcccCCCCCCCCccceEEEe
Q 001224          984 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus       984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~Dg~v~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
                      ||+.+++.........|...|.+++|+||+++|++ |+.||.|++||+.+++. +..+..   ..   +...+.  +++|
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~---~~~~v~--~~~~  321 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS---SKESQR--GMGY  321 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC---CSSCCS--EEEE
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc---cCCccc--ceEE
Confidence            99998765222222356788999999999999975 45799999999999884 444331   11   122355  8999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +| ++.++++  .|+.+++|++.+++
T Consensus       322 sp-~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          322 MP-KRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred             ec-cccccee--cceeEEEEEcCCCc
Confidence            99 5777664  57799999998865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-28  Score=280.03  Aligned_cols=251  Identities=12%  Similarity=0.071  Sum_probs=207.6

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEeec
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~  897 (1120)
                      |...|.+++|+|++++|++++ ||.|++||+.  +++.+..+.+|...|++++|++ +  +++|++|+.||.|++||+.+
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence            999999999999999999998 9999999998  6677788999999999999997 5  89999999999999999999


Q ss_pred             ce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-----
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-----  968 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-----  968 (1120)
                      ++  .+..+.+|...|++++|+|+  +.+|++++.|+.|++||+..+.......   ..+|.   ..|.+++|+|     
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~---~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHA---IGVNSASWAPATIEE  162 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCT---TCEEEEEECCCC---
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCC---CceEEEEEcCccccc
Confidence            87  77888899999999999999  9999999999999999999864433222   23333   3789999999     


Q ss_pred             --------CCcEEEEE-eCCeEEEEEcCCceee--eccccCCCCCCeeEEEECCC---CcEEEEEEcCCcEEEEEcCCcc
Q 001224          969 --------DQIHFLVV-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       969 --------dg~~la~~-~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                              ++.+++++ .|+.|++||+.++...  ......+|...|.+++|+|+   +++|++++.||.|+|||+.++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    68999885 7999999999876432  11223478999999999999   8999999999999999999875


Q ss_pred             eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1035 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1035 ~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      ........  ...+| ...+.  +++|+| ++++|++++.||.|++|++..+
T Consensus       243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred             ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence            22111100  01111 22244  899999 6899999999999999999854

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.6e-28  Score=284.54  Aligned_cols=267  Identities=13%  Similarity=0.220  Sum_probs=214.1

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+......         ..........+.+|...|.+++|+|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence            4567789999999999998655899999999999999976211000         0000001114678999999999999


Q ss_pred             CCC-eEEEEECCCeEEEEEccCCce----eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC---cee
Q 001224          437 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ  508 (1120)
Q Consensus       437 dg~-~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~---~~~  508 (1120)
                      ++. +|++|+.||.|++|++.++..    +.....+.+|...|.+++|+|++.. ++++++.|+.|++||++++   +.+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence            998 999999999999999987432    2234467789999999999995544 7999999999999999987   577


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      ..+..|...|.+++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|++.               
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~---------------  334 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE---------------  334 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred             eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence            88889999999999976542 4799999999999999997 445667777777777777777765               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCC--------------CceeEEEecCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEE
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA  652 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd  652 (1120)
                           ..|++++.||.|++||+..              .+.+..+..|  ...|.+++|+|++. ++++++.||.|++|+
T Consensus       335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                 4689999999999999987              2445555444  44799999999999 999999999999999


Q ss_pred             ccCc
Q 001224          653 TSDG  656 (1120)
Q Consensus       653 ~~~~  656 (1120)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.7e-27  Score=275.43  Aligned_cols=320  Identities=15%  Similarity=0.177  Sum_probs=237.8

Q ss_pred             ceEEEE---EcCCCCeEEEE--------------ECCCeEEEEEcc--CCceeeeeeeecccccCeEEEEEcCCCCceEE
Q 001224          428 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV  488 (1120)
Q Consensus       428 ~V~~l~---~spdg~~las~--------------~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l  488 (1120)
                      .+..++   |+|+++.++..              +.++.+.||.++  ++. ......+..+ ..+.+++|+|++.  ++
T Consensus        62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~  137 (433)
T 3bws_A           62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA  137 (433)
T ss_dssp             EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred             ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence            455666   66666655543              333433555554  342 2222344444 4566999999655  78


Q ss_pred             EEecCCCcEEEEECCCCceeE-----EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCcee
Q 001224          489 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT  563 (1120)
Q Consensus       489 ~s~s~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  563 (1120)
                      ++++.|+.|++||+.+++.+.     .+.+|...|.+++|.  +++.++++++.|+.|++||+.+.+....+..+...+.
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  215 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK  215 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence            888999999999999999887     445788899999985  4558999999999999999998777777766666666


Q ss_pred             EEEEcCCCCeEEecccccceeEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE
Q 001224          564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  642 (1120)
                      +++|+|++.                     .+ ++++.++.|++||+.+++.+..+..+.   .+.+++|+|+|++++++
T Consensus       216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred             EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence            666666664                     56 455589999999999999888876543   48899999999999988


Q ss_pred             EC--------CCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcc
Q 001224          643 TN--------DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  714 (1120)
Q Consensus       643 ~~--------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1120)
                      +.        |+.|++||+.++. ....+                                                   
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~-~~~~~---------------------------------------------------  299 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEK-LIDTI---------------------------------------------------  299 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTE-EEEEE---------------------------------------------------
T ss_pred             ECCCCccccCCCeEEEEECCCCc-EEeec---------------------------------------------------
Confidence            73        5566666654330 00000                                                   


Q ss_pred             cccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCC
Q 001224          715 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  794 (1120)
Q Consensus       715 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  794 (1120)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE-e-CCcEEEEEcCCCceeeeecCCCCCeEEEE
Q 001224          795 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA  872 (1120)
Q Consensus       795 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~  872 (1120)
                                                 .+...+.+++|+|+++.+++. + ++.|++||+.+++.+..+. +...+.+++
T Consensus       300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~  351 (433)
T 3bws_A          300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA  351 (433)
T ss_dssp             ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred             ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence                                       022245567788888755443 4 7889999998888877776 667899999


Q ss_pred             EecCCCcEEEEEeC---------------CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC-CCCEEEEE
Q 001224          873 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS  936 (1120)
Q Consensus       873 ~sp~d~~~lasg~~---------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd  936 (1120)
                      |+| ++++|++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |+.|++|+
T Consensus       352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            999 8888888776               579999999999988888764 57899999999999988775 99999999


Q ss_pred             CCC
Q 001224          937 SDG  939 (1120)
Q Consensus       937 ~~~  939 (1120)
                      ++.
T Consensus       430 ~~~  432 (433)
T 3bws_A          430 RDG  432 (433)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.3e-26  Score=265.65  Aligned_cols=227  Identities=15%  Similarity=0.121  Sum_probs=179.3

Q ss_pred             CeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE-EEEECCCeEEEEEc
Q 001224          377 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY  455 (1120)
Q Consensus       377 ~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~dg~v~iwd~  455 (1120)
                      ++++++++.|+.|++||+.+++.+..                   +.+|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            34799999999999999999987753                   34454 58999999999987 56778999999999


Q ss_pred             cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEE-EE
Q 001224          456 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS  534 (1120)
Q Consensus       456 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s  534 (1120)
                      .+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++  ++.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence            9988665   344443 8999999999995 4466778899999999999998888754 56788998654  4555 78


Q ss_pred             EecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE-EEEeCCCeEEEEECCCCc
Q 001224          535 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ  613 (1120)
Q Consensus       535 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  613 (1120)
                      ++.|+.|++||+.+.+....+..+ ..+..+                     +|+|+++++ ++++.++.|++||+.+++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~---------------------~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGI---------------------AVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEE---------------------EECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-CCcceE---------------------EECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            888999999999876555444432 223444                     455555566 567789999999999998


Q ss_pred             eeEEEecCCCCCCcCeEEEcCCCCEEEEEE---CCCcEEEEEccCc
Q 001224          614 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG  656 (1120)
Q Consensus       614 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~  656 (1120)
                      .+..+..+.   .+.+++|+|+++++++++   .++.|++||+.++
T Consensus       192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            888876433   578999999999999888   6899999998765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=276.62  Aligned_cols=263  Identities=15%  Similarity=0.058  Sum_probs=200.6

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCc---eeEeeceeee---ccCC-------------------------
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA-------------------------  412 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~-------------------------  412 (1120)
                      ..++++++|+|||+ +|+++ .++.|++||+.+|+   .+.......-   ....                         
T Consensus         4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999999999 45554 47899999999998   4432111000   0000                         


Q ss_pred             -------CCcccccccccCCCCceEEEEEcCCCCeE-EEEECCCeEEEEEcc--CCceeeeeeeecccccCeEEEEEcCC
Q 001224          413 -------CSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP  482 (1120)
Q Consensus       413 -------~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d  482 (1120)
                             ...........+|.+.|.+++|+|+|++| ++|+.||.|+|||+.  +++.+... ....|...|.+++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCC
Confidence                   00000111234677789999999999996 889999999999999  77766522 11357789999999999


Q ss_pred             CCceEEEEecCCCcEEEEECCCCceeE----EeeccccCeEEEeeccC-CCceEEEEEecCCeEEEEecCCCCCcee-ee
Q 001224          483 NKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YE  556 (1120)
Q Consensus       483 ~~~~~l~s~s~d~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~  556 (1120)
                      ++  +|++|+.|+.|++|++.++....    .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...... +.
T Consensus       161 ~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          161 DT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             SS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred             CC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence            99  79999999999999998887554    78889999999999875 2257999999999999999988776655 34


Q ss_pred             CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---------------
Q 001224          557 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------------  621 (1120)
Q Consensus       557 ~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------  621 (1120)
                      .|...|.+++|+ ++                     ++|++++.|+.|++||+.+++.+..+..+               
T Consensus       239 ~h~~~v~~~~~s-d~---------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (450)
T 2vdu_B          239 GHKHFVSSICCG-KD---------------------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP  296 (450)
T ss_dssp             CCSSCEEEEEEC-ST---------------------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--
T ss_pred             CCCCceEEEEEC-CC---------------------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc
Confidence            566666666655 44                     58999999999999999999988887632               


Q ss_pred             --------CCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEc
Q 001224          622 --------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT  653 (1120)
Q Consensus       622 --------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~  653 (1120)
                              .....+.+++|+|+++++++++ .++.|++|++
T Consensus       297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                    1123578999999999999999 8999999998

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3.1e-28  Score=278.00  Aligned_cols=267  Identities=10%  Similarity=-0.031  Sum_probs=186.6

Q ss_pred             cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC-----
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-----  436 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-----  436 (1120)
                      .|...+....+++++. ++|+|+.|++|+|||+.+++......+.              .+.||.+.|++++|+|     
T Consensus        87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~--------------~~~gH~~~v~~v~~~p~~~~~  151 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVLG--------------GKSGHHNFVNDIDIADVYSAD  151 (393)
T ss_dssp             ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEEC--------------TTTSCSSCEEEEEEEEEECTT
T ss_pred             ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeeec--------------ccCCCCCceEEEEEccccccc
Confidence            3555555556666666 6999999999999999988765432221              4789999999999998     


Q ss_pred             ---CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe--
Q 001224          437 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  511 (1120)
Q Consensus       437 ---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~--  511 (1120)
                         ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.....  
T Consensus       152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred             cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence               89999999999999999999877554   56678999999999999865 7999999999999999987654322  


Q ss_pred             -----------------------eccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEc
Q 001224          512 -----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  568 (1120)
Q Consensus       512 -----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  568 (1120)
                                             .+|...|.++.|. .+++..|++++.|+++++||+........+..+...+..+.+.
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence                                   3577778888875 3567899999999999999999888777777788888888888


Q ss_pred             CCCCeEEecccccceeEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001224          569 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  647 (1120)
Q Consensus       569 ~~g~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  647 (1120)
                      |+++....  ....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+..  .|.+++|+|||++||+++.+| 
T Consensus       307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred             cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence            87643211  122233333444344 556678899999999999998887765544  799999999999999998765 


Q ss_pred             EEEEEc
Q 001224          648 IKILAT  653 (1120)
Q Consensus       648 i~iwd~  653 (1120)
                      +.+|.+
T Consensus       382 v~lvrL  387 (393)
T 4gq1_A          382 VLLTRL  387 (393)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            556654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=5.7e-27  Score=248.20  Aligned_cols=294  Identities=14%  Similarity=0.116  Sum_probs=208.9

Q ss_pred             CeEEEEEc-CCCCceEEEEecCCCcEEEEECCCC---ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          473 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       473 ~V~~v~~s-~d~~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                      .+.++-|- +..+.+.+++++. ..|++|+..++   ++++++.+|..+|..+.+.++..+-.-++-+.           
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------  108 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN-----------  108 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence            35666663 3445556777775 68999999999   89999999999999999877654322222221           


Q ss_pred             CCCceeeeCCCCceeEEEEcCC----CCeEEecccccceeEEEEcCCCCEEEEEe--CCCeEEEEEC-CCCceeEEEecC
Q 001224          549 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD  621 (1120)
Q Consensus       549 ~~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~  621 (1120)
                              .+...|..++++|+    ++.+..+.+...+.  .+ ++++.+.+++  .|+.|++|++ .+++.+..+..+
T Consensus       109 --------~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~--~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~  177 (356)
T 2w18_A          109 --------LEIREIRALFCSSDDESEKQVLLKSGNIKAVL--GL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM  177 (356)
T ss_dssp             --------SSEEEEEEECC------CCEEEEEEEEEEEEE--EE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred             --------ccccceEEEEECCCccccccEEEeCCCeEEEE--ec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence                    12345788999999    77777765543443  34 5555555533  5999999999 458888888777


Q ss_pred             CCCCCcCeEEEcC---CCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224          622 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  698 (1120)
Q Consensus       622 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1120)
                      ..  .+..++|++   ++.+|++++.|++|++||+.++ ++++.+.++..                              
T Consensus       178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------  224 (356)
T 2w18_A          178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------  224 (356)
T ss_dssp             CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred             CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence            55  678889998   7899999999999999999988 44444432111                              


Q ss_pred             cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC
Q 001224          699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  778 (1120)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  778 (1120)
                                                                               +...+.+++|+|+|..+++++.+
T Consensus       225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred             ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence                                                                     22356778899999877766543


Q ss_pred             ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCce
Q 001224          779 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  857 (1120)
Q Consensus       779 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~  857 (1120)
                      ..  +|                                                     .+++|+ |++|++||..+++.
T Consensus       248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred             CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence            11  11                                                     356777 89999999999988


Q ss_pred             eeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE-EEEEccCCCEEEEEeCCCC
Q 001224          858 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ  931 (1120)
Q Consensus       858 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~  931 (1120)
                      +..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            7665     366655444433   467999999999999999999999999999988766 5899999999999999999


Q ss_pred             EEEEEC
Q 001224          932 LCVWSS  937 (1120)
Q Consensus       932 v~iWd~  937 (1120)
                      |+|||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.5e-26  Score=265.04  Aligned_cols=329  Identities=8%  Similarity=0.091  Sum_probs=241.6

Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      .++++++.|+.|++||+.+++.+.   .+.+|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence            467888999999999999988665   455554 5899999999995 45788899999999999999999888665 89


Q ss_pred             EEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE-E
Q 001224          519 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L  596 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l-~  596 (1120)
                      .+++|++  ++++| ++++.++.|++||+.+.+....+..+ ..+.++                     +|+|+++.+ +
T Consensus        77 ~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~---------------------~~s~dg~~l~~  132 (391)
T 1l0q_A           77 QGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGL---------------------ALSPDGKKLYV  132 (391)
T ss_dssp             EEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEE---------------------EECTTSSEEEE
T ss_pred             cceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceE---------------------EECCCCCEEEE
Confidence            9999865  44566 45556799999999876555444332 234444                     455555556 6


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      +++.++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.++.|++||+.++. ....+.           
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~-----------  197 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-----------  197 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-----------
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEe-----------
Confidence            78889999999999999988887553   46899999999987 566778999999986541 000000           


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                                                                                         +...+.+++|+|+
T Consensus       198 -------------------------------------------------------------------~~~~~~~~~~~~~  210 (391)
T 1l0q_A          198 -------------------------------------------------------------------VEAAPSGIAVNPE  210 (391)
T ss_dssp             -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred             -------------------------------------------------------------------cCCCccceEECCC
Confidence                                                                               1223456677777


Q ss_pred             CCEEEEEe----CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeEeecccccc
Q 001224          836 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR  910 (1120)
Q Consensus       836 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~  910 (1120)
                      ++++++++    ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            77666654    5789999998888888887654 589999999 77666 67788999999999999998888776654


Q ss_pred             eE---EEE------------EccCC----------CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224          911 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       911 V~---~l~------------~s~d~----------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  965 (1120)
                      ..   .+.            |+.+.          ..+...+.|.++++|++..+...      ..        ......
T Consensus       289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~  354 (391)
T 1l0q_A          289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT  354 (391)
T ss_dssp             ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred             CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence            32   122            22221          34666777899999999875421      00        123467


Q ss_pred             EccCCcEEEE
Q 001224          966 FHQDQIHFLV  975 (1120)
Q Consensus       966 fspdg~~la~  975 (1120)
                      |+++|.|.+.
T Consensus       355 ~~~~g~y~~~  364 (391)
T 1l0q_A          355 YSETGIYTVR  364 (391)
T ss_dssp             CSSCEEEEEE
T ss_pred             eCCCceEEEE
Confidence            9999998876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.5e-28  Score=299.19  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=205.8

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCC--ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      .-+|.+.|++++|+|+|++ +++|+.||+|+|||+.++  +.+.                   .+.+|.++|++++|+|+
T Consensus         5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~   64 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   64 (753)
T ss_dssp             ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred             cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence            3469999999999999995 999999999999999843  3332                   37789999999999998


Q ss_pred             --CCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCC--CCceEEEEecCCCcEEEEECCCC--ceeEEe
Q 001224          438 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNG--AKQYIF  511 (1120)
Q Consensus       438 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~s~d~~i~vwd~~~~--~~~~~~  511 (1120)
                        +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+  +.  ++++|+.||.|++||+.++  .....+
T Consensus        65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence              99999999999999999999862 233467889999999999999  88  7999999999999999887  345667


Q ss_pred             eccccCeEEEeeccCC-----------CceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEEe
Q 001224          512 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       512 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      .+|...|.+++|++..           ++.++++|+.||.|++||++.....    ..+..|...|.+++|+|++.    
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----  217 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----  217 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC----
Confidence            8899999999997742           4679999999999999999876432    23444555555555555410    


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                                    .++++++++.||.|++||+.++...   .......+...|.+++|+|+|+++++++.||.|++|++
T Consensus       218 --------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          218 --------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             --------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             --------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence                          0468999999999999999886421   11222234557999999999999999999999999998


Q ss_pred             cCc
Q 001224          654 SDG  656 (1120)
Q Consensus       654 ~~~  656 (1120)
                      ..+
T Consensus       284 ~~~  286 (753)
T 3jro_A          284 NLE  286 (753)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.6e-27  Score=250.78  Aligned_cols=274  Identities=11%  Similarity=0.138  Sum_probs=201.6

Q ss_pred             eeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCc
Q 001224          724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  803 (1120)
Q Consensus       724 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  803 (1120)
                      +.......+++|+......-.....+    .+|+..|..+.+.||-..|++..-..                        
T Consensus        57 ~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~------------------------  108 (356)
T 2w18_A           57 IITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN------------------------  108 (356)
T ss_dssp             EEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS------------------------
T ss_pred             EEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc------------------------
Confidence            34444588999999875332334444    35778999999999877665443221                        


Q ss_pred             eeecCCCCCcccccCCCCCCCCCccEEEEccC----CCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc
Q 001224          804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  879 (1120)
Q Consensus       804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d----~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  879 (1120)
                                        -+...|.+++++||    ++++++++ ..+++|++.                       +++
T Consensus       109 ------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l~-----------------------~g~  146 (356)
T 2w18_A          109 ------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGLT-----------------------KRR  146 (356)
T ss_dssp             ------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEET-----------------------TTE
T ss_pred             ------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEecC-----------------------CCc
Confidence                              05667899999999    99999876 337778543                       455


Q ss_pred             EEEEEe--CCCcEEEEEee-cceeeEeecccccceEEEEEcc---CCCEEEEEeCCCCEEEEECCCcccccceeeeccCC
Q 001224          880 IIAIGM--DDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG  953 (1120)
Q Consensus       880 ~lasg~--~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~  953 (1120)
                      ++.+++  .|+.|++|++. +|+.+..+.+|...++.++|++   ++.+|||++.|++|+|||+.+++.     +..+.+
T Consensus       147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~tL~g  221 (356)
T 2w18_A          147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKKMHI  221 (356)
T ss_dssp             EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEEEEC
T ss_pred             EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEEEcC
Confidence            555433  47777777773 3677777889999999999999   789999999999999999999764     333333


Q ss_pred             CCCCCCCCcEEEEccCCcEEEE-------------EeCCeEEEEEcCCceeeeccc---cCCCCCCeeEEEECCCCcEEE
Q 001224          954 RTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVY 1017 (1120)
Q Consensus       954 ~~~~~~~i~~~~fspdg~~la~-------------~~d~~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~ 1017 (1120)
                      +......+.+++|+|+|+++++             +.|++|++||..+++++..+.   +.+|...+.+..++  +.+++
T Consensus       222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA  299 (356)
T 2w18_A          222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA  299 (356)
T ss_dssp             CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE
T ss_pred             CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE
Confidence            3322246788899999998743             367899999999999876542   34776666555554  88999


Q ss_pred             EEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1018 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1018 s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      +|+.|++|+|||+.+++.+..+.       +|....+.  .++|+| |+++|++|+.|++|+|||+.
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred             EEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence            99999999999999999999887       44444343  589999 69999999999999999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.7e-27  Score=274.25  Aligned_cols=246  Identities=9%  Similarity=0.040  Sum_probs=200.5

Q ss_pred             CCCCccEEEEccCCCEE-EEEe-CCcEEEEEcC--CCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          823 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      |...|.+++|+|++++| ++++ ||.|++||+.  +++.+..+.  .|...|++++|+| ++++|++|+.||.|++|++.
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence            66789999999999996 7887 8999999999  888888876  5678899999999 89999999999999999998


Q ss_pred             cceeeE----eecccccceEEEEEccC---CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          897 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       897 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                      +++...    .+.+|...|++++|+|+   +++|++++.|++|++||+.+++.    ......+|.   ..|.+++|+ +
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~~~~h~---~~v~~~~~s-d  251 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI----VDKWLFGHK---HFVSSICCG-K  251 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC----EEEECCCCS---SCEEEEEEC-S
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce----eeeeecCCC---CceEEEEEC-C
Confidence            876554    78899999999999999   99999999999999999988653    222244554   389999999 9


Q ss_pred             CcEEEE-EeCCeEEEEEcCCceeeeccccC-----------------------CCCCCeeEEEECCCCcEEEEEE-cCCc
Q 001224          970 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1024 (1120)
Q Consensus       970 g~~la~-~~d~~v~i~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~~-~Dg~ 1024 (1120)
                      +++|++ +.|+.|++||+.+++++..+...                       .+...|.+++|+|++++|++++ .|+.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            999999 58999999999999887766421                       2246799999999999999999 8999


Q ss_pred             EEEEEc--CCc---ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC-------CCcEEEEecCCCCCCC
Q 001224         1025 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1025 v~iwd~--~~~---~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~ 1090 (1120)
                      |+||++  .++   +.+..+.       ++  ..+.  +++|+| + .++++.+.       +..|.+|.+....+.|
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~  396 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSF  396 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred             EEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence            999999  555   5555554       21  1244  899999 4 45555433       5668999987665545

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.7e-27  Score=271.86  Aligned_cols=349  Identities=13%  Similarity=0.106  Sum_probs=211.6

Q ss_pred             CCCCceEEEE---ecCCCeEEEEEeCCCcEEEEecCCCce-----eEeeceeeeccCCCCc-----ccccccccCCCCce
Q 001224          363 QGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGVSV  429 (1120)
Q Consensus       363 h~~~v~~v~~---spdg~~lla~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~V  429 (1120)
                      -.....++.|   +|++..++++| .|+.|.+|+......     ........+.......     +........|...+
T Consensus        14 l~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (393)
T 4gq1_A           14 LNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDG   92 (393)
T ss_dssp             TTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC------
T ss_pred             CCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCc
Confidence            3455667777   45666656665 578899998643211     1111111122111100     00111233455566


Q ss_pred             EEEEEcCCCCeEEEEECCCeEEEEEccCCceee--eeeeecccccCeEEEEEcC--------CCCceEEEEecCCCcEEE
Q 001224          430 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       430 ~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~s~d~~i~v  499 (1120)
                      ....+++++.+||+|+.|++|+|||++++....  ....+.||.+.|++|+|+|        |++  +|++|+.|++|+|
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~  170 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLII  170 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEE
Confidence            666777788999999999999999999887543  2345789999999999998        777  7999999999999


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      ||+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.+.........+.......              
T Consensus       171 Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------  235 (393)
T 4gq1_A          171 WRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------  235 (393)
T ss_dssp             EEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC--------------
T ss_pred             EECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce--------------
Confidence            9999999888888899999999997643 3589999999999999998866544332221111100              


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCcch
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                                     .++......           .......++...+.++.|+ ++++.+++++.|+++++||+..+ .
T Consensus       236 ---------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~  288 (393)
T 4gq1_A          236 ---------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-N  288 (393)
T ss_dssp             ---------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred             ---------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC-C
Confidence                           011110000           0011111234468889987 79999999999999999998766 2


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      ....+..                                                                         
T Consensus       289 ~~~~l~~-------------------------------------------------------------------------  295 (393)
T 4gq1_A          289 DYNEISD-------------------------------------------------------------------------  295 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEee-------------------------------------------------------------------------
Confidence            2222211                                                                         


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                                       +...+..+.+.+++..+..                                            
T Consensus       296 -----------------~~~~~~~~~~~~~~~~~~~--------------------------------------------  314 (393)
T 4gq1_A          296 -----------------STMKLGPKNLLPNVQGISL--------------------------------------------  314 (393)
T ss_dssp             -------------------------CCSCSEEEECS--------------------------------------------
T ss_pred             -----------------ecCccccEEEccccccccc--------------------------------------------
Confidence                             1222223333333321100                                            


Q ss_pred             CCCCCCCCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          819 TDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                          +...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++.+| +.+|.+.
T Consensus       315 ----~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          315 ----FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ----SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred             ----cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence                111122222223 444566777 89999999999998888888999999999999 999999998766 6666553

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1e-26  Score=270.55  Aligned_cols=296  Identities=13%  Similarity=0.107  Sum_probs=225.9

Q ss_pred             CceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeee--eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       427 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  .+.+|.+.|.+++|++++.  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            356699999988888888889999999999988654221  3458999999999999998  799999999999999999


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      ++.+..+..|...+.+++|+++.  ..+ ++++.|+.|++||+.+.+....+.. ...+..                   
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~-------------------  258 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG-------------------  258 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE-------------------
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE-------------------
Confidence            99999999999999999987543  455 5666899999999987654443332 222444                   


Q ss_pred             eEEEEcCCCCEEEEEe--------CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEcc
Q 001224          584 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS  654 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~  654 (1120)
                        ++++|+++.+++++        .||.|++||+.+++.+..+....   .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus       259 --~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          259 --LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             --EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             --EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence              45555555777776        58899999999998877764322   47889999999755 556889999999987


Q ss_pred             CcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCccee
Q 001224          655 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  734 (1120)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v  734 (1120)
                      ++ +....+                                                                       
T Consensus       334 ~~-~~~~~~-----------------------------------------------------------------------  341 (433)
T 3bws_A          334 EK-KVQKSI-----------------------------------------------------------------------  341 (433)
T ss_dssp             TT-EEEEEE-----------------------------------------------------------------------
T ss_pred             CC-cEEEEe-----------------------------------------------------------------------
Confidence            65 111111                                                                       


Q ss_pred             eecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcc
Q 001224          735 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  814 (1120)
Q Consensus       735 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~  814 (1120)
                                          .+...+.+++|+|+|+.+++++.+..                                  
T Consensus       342 --------------------~~~~~~~~~~~s~dg~~l~~~~~~~~----------------------------------  367 (433)
T 3bws_A          342 --------------------PVFDKPNTIALSPDGKYLYVSCRGPN----------------------------------  367 (433)
T ss_dssp             --------------------ECSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred             --------------------cCCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence                                02345778999999987777765411                                  


Q ss_pred             cccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 001224          815 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  892 (1120)
Q Consensus       815 ~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~v  892 (1120)
                              .   +       ...++++|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus       368 --------~---~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          368 --------H---P-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             --------C---T-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred             --------c---c-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence                    0   0       223455566 89999999999998888875 45799999999 8888887775 999999


Q ss_pred             EEeec
Q 001224          893 YNVRV  897 (1120)
Q Consensus       893 wd~~~  897 (1120)
                      |++..
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99853

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=266.10  Aligned_cols=198  Identities=12%  Similarity=0.110  Sum_probs=158.1

Q ss_pred             CCCCccEEEEcc--CCCEEEEEe-CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          823 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       823 ~~~~v~~l~~s~--d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      |...|.+++++|  +++++++++ ||+|++||+.+++....... +...|++++|+| ++.+||+|+.||.|++||+.++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence            667899999999  999999999 99999999999988776643 455799999999 9999999999999999999999


Q ss_pred             eee-Eeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCC--cEEEEccCCcEEE
Q 001224          899 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL  974 (1120)
Q Consensus       899 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~fspdg~~la  974 (1120)
                      +.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++...  .+.....+.   ..+  .+++|+|+|++|+
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence            877 78888 999999999999999999999 5599999999865422  111111111   122  4699999999999


Q ss_pred             EE-e-CCeEEEEEcCCceeeeccccCCCCCCeeEEEECC---CCcEEEEEEcCCcEEEEEcCCc
Q 001224          975 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       975 ~~-~-d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      ++ . |+.+++|++.+....  |.    ..++..++|++   +++.+++++.||.++++-....
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKN--WT----KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCS--EE----EEEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             EecCCCCcEEEEEEcccccc--eE----ecCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            94 4 999999999765432  22    14677888998   8999999999999998865443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.9e-26  Score=259.16  Aligned_cols=295  Identities=11%  Similarity=0.124  Sum_probs=204.1

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhh
Q 001224          582 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       582 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                      .+.+++|+|++++|++|+.++ +++||..+++.......+    .+..+++.++++.+ ++++.|++|++||..++ +.+
T Consensus        21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~-~~~   94 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK-QDV   94 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEEEECSSTTEEEEEETTTT-EEE
T ss_pred             ceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEEEEECCccEEEEEECCCC-cEE
Confidence            334444444445788777665 789999988776665432    37778999988887 46777899999998776 221


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+.                                                                            
T Consensus        95 ~~~~----------------------------------------------------------------------------   98 (355)
T 3vu4_A           95 SRIK----------------------------------------------------------------------------   98 (355)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEE----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                     +...|.++.++++.  +++ +.++.+++|++....                     +.+.. +  
T Consensus        99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~---------------------~~~~~-~--  136 (355)
T 3vu4_A           99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPW---------------------KRITD-D--  136 (355)
T ss_dssp             ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTC---------------------CBSSC-C--
T ss_pred             ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCc---------------------eeeEE-e--
Confidence                           33467888888775  333 347789999874320                     11110 0  


Q ss_pred             CCCCCCccEEEEccCCCEEEEE--e-CCcEEEEEcCCCc----------------eeeeecCCCCCeEEEEEecCCCcEE
Q 001224          821 SNPEEAVPCFALSKNDSYVMSA--S-GGKISLFNMMTFK----------------TMATFMPPPPAATFLAFHPQDNNII  881 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~--s-dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~l~~sp~d~~~l  881 (1120)
                         ......+++++  .+++++  + +|.|++||+.++.                .+..+.+|...|++++|+| ++++|
T Consensus       137 ---~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l  210 (355)
T 3vu4_A          137 ---IRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMV  210 (355)
T ss_dssp             ---EEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEE
T ss_pred             ---ccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEE
Confidence               01334566667  667764  4 8999999998765                2678899999999999999 99999


Q ss_pred             EEEeCCCc-EEEEEeecceeeEeec-c-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC
Q 001224          882 AIGMDDSS-IQIYNVRVDEVKSKLK-G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  958 (1120)
Q Consensus       882 asg~~dg~-v~vwd~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~  958 (1120)
                      |+|+.||+ |++||+.+++++..+. + |...|++++|+||+++|++++.|++|++||+..+.......+..        
T Consensus       211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~--------  282 (355)
T 3vu4_A          211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG--------  282 (355)
T ss_dssp             EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT--------
T ss_pred             EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc--------
Confidence            99999998 9999999999999998 6 99999999999999999999999999999998754322111110        


Q ss_pred             CCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                        +    +.|.  ++  ...-.+..+.+.          ..+......++|++||++|++++.||.+++|++..++
T Consensus       283 --~----~~~~--~~--~~~~~~~~~~~~----------~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          283 --W----INMK--YF--QSEWSLCNFKLS----------VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             --T----EECC--CC--CCSSCSEEEECC----------CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             --e----eecc--cc--ccccceeEEEec----------cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence              0    0000  00  000001111111          1223445779999999999999999999999986654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2e-26  Score=259.07  Aligned_cols=236  Identities=14%  Similarity=0.136  Sum_probs=178.4

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCe
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  440 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  440 (1120)
                      -.|...|++++|||||+ +||+|+.+| ++|||+.+++.....                     +...+..+++++++++
T Consensus        16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred             ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence            44899999999999999 588888765 789999887665421                     1225888999999988


Q ss_pred             EE-EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC-ceeEEeeccccCe
Q 001224          441 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  518 (1120)
Q Consensus       441 la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~-~~~~~~~~h~~~v  518 (1120)
                      ++ +++.|++|+|||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..   +.
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~  140 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG  140 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred             EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence            85 57788999999999998765   344 66799999999864    2333 3789999999988 77766654   33


Q ss_pred             EEEeeccCCCceEEEE--EecCCeEEEEecCCCCC----------------ceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          519 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ..+++++    .+++.  |+.||.|++||+.+...                ...+..|..                    
T Consensus       141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~--------------------  196 (355)
T 3vu4_A          141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN--------------------  196 (355)
T ss_dssp             EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--------------------
T ss_pred             ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--------------------
Confidence            3344444    34554  57899999999987541                333444444                    


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                       .+.+++|+|++++|++++.||+ |++||+.+++++..+....+...|.+++|+|+|++|++++.|++|++||+..+
T Consensus       197 -~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          197 -PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             -CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             -ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence             4555555555568999999998 99999999999999973213457999999999999999999999999999765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.9e-27  Score=292.24  Aligned_cols=251  Identities=12%  Similarity=0.080  Sum_probs=209.5

Q ss_pred             CCCCCccEEEEccCCCEEEEEe-CCcEEEEEcC--CCceeeeecCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEee
Q 001224          822 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~  896 (1120)
                      +|.+.|++++|+|+++++++|+ ||.|++||+.  +++.+..+.+|...|++++|+| +  +++|++|+.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence            3999999999999999999998 9999999998  5677888999999999999998 6  8999999999999999999


Q ss_pred             cce--eeEeecccccceEEEEEccC--CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc----
Q 001224          897 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----  968 (1120)
Q Consensus       897 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp----  968 (1120)
                      +++  .+..+.+|...|++++|+|+  +.+|++|+.||.|++||+.++........   .+|.   ..|.+++|+|    
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence            986  77888999999999999999  99999999999999999998644333222   3333   3799999999    


Q ss_pred             ---------CCcEEEE-EeCCeEEEEEcCCc----eeeeccccCCCCCCeeEEEECCC---CcEEEEEEcCCcEEEEEcC
Q 001224          969 ---------DQIHFLV-VHETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       969 ---------dg~~la~-~~d~~v~i~d~~~~----~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                               ++.++++ +.|+.|++||+.++    .....+  .+|...|++++|+|+   +++|++|+.||.|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     5888888 48999999999877    333433  488999999999999   9999999999999999999


Q ss_pred             CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1032 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1032 ~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +++........  ...+| ...+.  +++|+| ++.+|++|+.||.|++|++..+.
T Consensus       238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            87533221111  11122 23355  899999 68999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.9e-26  Score=267.06  Aligned_cols=212  Identities=19%  Similarity=0.280  Sum_probs=174.9

Q ss_pred             cccCCCCceEEEEEcCC-CCeEEEEECCCeEEEEEccCC-------ceeeeeeeecccccCeEEEEEcCCCCceEEEEec
Q 001224          421 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  492 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s  492 (1120)
                      ...+|.+.|++++|+|+ +.+||+++.||.|++|++.+.       ........+.+|...|.+++|+|++.. +|++|+
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~  201 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS  201 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence            45679999999999997 789999999999999999872       112234468899999999999999886 699999


Q ss_pred             CCCcEEEEECCCCce-------eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCC---CCceeeeCCCCce
Q 001224          493 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC  562 (1120)
Q Consensus       493 ~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v  562 (1120)
                      .||.|++||+.++..       ...+.+|...|.+++|++. ++.+|++++.||.|++||++..   .....+..|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999987432       4667789999999999874 3469999999999999999976   3455556666666


Q ss_pred             eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCC-EEE
Q 001224          563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA  640 (1120)
Q Consensus       563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  640 (1120)
                      .+++|+|++.                    ..+++|+.||.|++||+++ +..+..+..|.  ..|.+++|+|+++ +|+
T Consensus       281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECSSCTTEEE
T ss_pred             EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECCCCCCEEE
Confidence            6666666654                    3688999999999999998 56778887654  4799999999985 799


Q ss_pred             EEECCCcEEEEEccCc
Q 001224          641 VSTNDNGIKILATSDG  656 (1120)
Q Consensus       641 ~~~~dg~i~iwd~~~~  656 (1120)
                      +++.|+.|++||+...
T Consensus       339 s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEETTSCCEEEEGGGT
T ss_pred             EEeCCCcEEEEeCCCC
Confidence            9999999999998763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.8e-27  Score=262.66  Aligned_cols=280  Identities=8%  Similarity=0.051  Sum_probs=214.2

Q ss_pred             EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeC
Q 001224          478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  557 (1120)
Q Consensus       478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  557 (1120)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+..          
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~----------  103 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG----------  103 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence            4456666  79999999999999999999988886  466777777654     9999999999999764          


Q ss_pred             CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC--C
Q 001224          558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D  635 (1120)
Q Consensus       558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~  635 (1120)
                                                                  +.+.+|++.+++.+..+.. .+...|.+++|+|  +
T Consensus       104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  138 (343)
T 3lrv_A          104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN  138 (343)
T ss_dssp             --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred             --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence                                                        3567899988887776652 2334799999999  9


Q ss_pred             CCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCccc
Q 001224          636 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR  715 (1120)
Q Consensus       636 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (1120)
                      ++++++++.||+|++||+.++. ......                                                   
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~---------------------------------------------------  166 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS---------------------------------------------------  166 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence            9999999999999999998762 111100                                                   


Q ss_pred             ccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCC
Q 001224          716 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  795 (1120)
Q Consensus       716 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  795 (1120)
                                                            ..+...+.+++|+|++..+++++.||.|++||+..       
T Consensus       167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-------  201 (343)
T 3lrv_A          167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-------  201 (343)
T ss_dssp             --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred             --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence                                                  01334588999999999999999999999998743       


Q ss_pred             ccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecC---CCCCeE--E
Q 001224          796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F  870 (1120)
Q Consensus       796 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~  870 (1120)
                                     +......+. .+|...|.+++|+|++.+|++++++.|++||+.+++.+..+..   |...+.  +
T Consensus       202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence                           222201111 1388999999999999999999977999999998877665553   333443  6


Q ss_pred             EEEecCCCcEEEEEeC-CCcEEEEEeecceeeEeecccccceEEEEEcc---CCCEEEEEeCCCCEEEEECCC
Q 001224          871 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                      ++|+| ++++|++++. |+.|++|++.+.......    .++..++|++   +...|++++.|+.+.++-...
T Consensus       266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            99999 9999999998 999999999765433222    5678889998   889999999999998885443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=3.1e-25  Score=262.17  Aligned_cols=335  Identities=12%  Similarity=0.136  Sum_probs=241.6

Q ss_pred             EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCccccccccc-CCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      +|+|++. ++++++.|++|.+||..+++.+..                   +. +|.  +..++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            3788886 689999999999999999988764                   22 343  899999999999999999999


Q ss_pred             EEEEEc--cCCceeeeeeeecccccCeEEEEEcC----CCCceEEEEec-CCCcEEEEECCCCceeEEeecc--------
Q 001224          450 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH--------  514 (1120)
Q Consensus       450 v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~s-~d~~i~vwd~~~~~~~~~~~~h--------  514 (1120)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++.++..+        
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7877655   444 345689999999    999  566666 5899999999999999888653        


Q ss_pred             --c-cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee-eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          515 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       515 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                        . ..+.++.++++. ..++++...++.|.+||+.+.+.... ...+...+..                     +.|+|
T Consensus       276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~---------------------~~~sp  333 (543)
T 1nir_A          276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD---------------------GGWDS  333 (543)
T ss_dssp             EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC---------------------EEECT
T ss_pred             cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC---------------------ceECC
Confidence              2 267888886643 36788888899999999987654331 1112233334                     45555


Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEE-EcCC-CCEEEEEE-CCCcEEEEEccCcchhhhhcccc
Q 001224          591 TKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFENL  666 (1120)
Q Consensus       591 ~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  666 (1120)
                      ++++++++ ..+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|.+||+.+..        |
T Consensus       334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~  405 (543)
T 1nir_A          334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------H  405 (543)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------C
T ss_pred             CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------C
Confidence            55666654 468999999999999988887422111112233 4676 66666665 57999999986531        0


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccc
Q 001224          667 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  746 (1120)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~  746 (1120)
                      ...          .+                                                                 
T Consensus       406 ~~~----------~~-----------------------------------------------------------------  410 (543)
T 1nir_A          406 PQY----------AW-----------------------------------------------------------------  410 (543)
T ss_dssp             TTT----------BT-----------------------------------------------------------------
T ss_pred             chh----------cC-----------------------------------------------------------------
Confidence            000          00                                                                 


Q ss_pred             eeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCC
Q 001224          747 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  826 (1120)
Q Consensus       747 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~  826 (1120)
                                 .                     .+..                                  +.  .|...
T Consensus       411 -----------~---------------------~v~~----------------------------------l~--~~g~~  422 (543)
T 1nir_A          411 -----------K---------------------KVAE----------------------------------LQ--GQGGG  422 (543)
T ss_dssp             -----------S---------------------EEEE----------------------------------EE--CSCSC
T ss_pred             -----------e---------------------EEEE----------------------------------EE--cCCCC
Confidence                       0                     0000                                  00  03445


Q ss_pred             ccEEEEccCCCEEEEEe--------CCcEEEEEcCCCcee-eee--------cCCCCCeEEEEEecCCCcEEEEEe----
Q 001224          827 VPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM----  885 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~----  885 (1120)
                      +..++++||+++|++++        +++|.+||+.+++.. ..+        ..+...+..++|+| +|+.|+++.    
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~  501 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGK  501 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCC
Confidence            56688888888888875        468999999988876 443        34567899999999 788777653    


Q ss_pred             -CCCcEEEEEeecceeeEeeccc
Q 001224          886 -DDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       886 -~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                       .|+.|.|||..+++++.+++.+
T Consensus       502 ~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          502 NDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             TSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCeEEEEECCCceEEEeecCC
Confidence             4799999999999999988864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.7e-25  Score=264.40  Aligned_cols=334  Identities=11%  Similarity=0.084  Sum_probs=243.6

Q ss_pred             EEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEec--CCCCCceee
Q 001224          478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDY  555 (1120)
Q Consensus       478 ~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~  555 (1120)
                      +|+|++.  ++++++.|++|.+||..+++++.++..+.. +..++|+  ++|++|++++.|++|++||+  .+.+....+
T Consensus       144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            3788886  789999999999999999999999984333 7788874  56689999999999999999  554444433


Q ss_pred             eCCCCceeEEEEcCCCCeEEecccccceeEEEEcC----CCCEEEEEe-CCCeEEEEECCCCceeEEEecCCC-------
Q 001224          556 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-------  623 (1120)
Q Consensus       556 ~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------  623 (1120)
                      . ....+..                     ++|+|    +|+++++++ .+++|.+||..+++++..+...+.       
T Consensus       219 ~-~g~~p~~---------------------va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          219 K-IGIEARS---------------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             E-CCSEEEE---------------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             e-cCCCcce---------------------EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence            3 2233344                     44555    555787777 589999999999999988875321       


Q ss_pred             --CCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001224          624 --LPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  700 (1120)
Q Consensus       624 --~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1120)
                        ...+.++.++|++..+ ++...++.|.+||..+... ..                                       
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~---------------------------------------  316 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT---------------------------------------  316 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE---------------------------------------
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce---------------------------------------
Confidence              1246678888866544 4445567788887654310 00                                       


Q ss_pred             cccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCce
Q 001224          701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  780 (1120)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  780 (1120)
                                                                                 +..+                 
T Consensus       317 -----------------------------------------------------------~~~i-----------------  320 (543)
T 1nir_A          317 -----------------------------------------------------------VTSI-----------------  320 (543)
T ss_dssp             -----------------------------------------------------------EEEE-----------------
T ss_pred             -----------------------------------------------------------eEEe-----------------
Confidence                                                                       0000                 


Q ss_pred             EEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCcee
Q 001224          781 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM  858 (1120)
Q Consensus       781 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~  858 (1120)
                                                               .+...+..++|+|+|+++++++  +++|.+||..+++++
T Consensus       321 -----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          321 -----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             -----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             -----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence                                                     0223345688999999877665  689999999999988


Q ss_pred             eeecC----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeEeecccccceEEEEEccCCCEEEEE
Q 001224          859 ATFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSS  926 (1120)
Q Consensus       859 ~~~~~----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~  926 (1120)
                      ..+..    |.+....+ ++|+++.+++++. .|++|.|||+.+       +++++++.+|...+..++|+||+++|+++
T Consensus       360 ~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          360 ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence            87764    54444333 5784577788775 689999999998       89999999999999999999999999998


Q ss_pred             e-------CCCCEEEEECCCcccccce-eeeccCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceee
Q 001224          927 G-------ADSQLCVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECV  992 (1120)
Q Consensus       927 s-------~Dg~v~iWd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~fspdg~~la~~------~d~~v~i~d~~~~~~~  992 (1120)
                      +       .+++|.|||+.+++..... .+....+.......+..+.|+|+|+.+.++      .++.|.|||..+++++
T Consensus       439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          439 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             cCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence            7       2779999999997754111 111111111112478899999999999874      2689999999999999


Q ss_pred             eccc
Q 001224          993 KQWV  996 (1120)
Q Consensus       993 ~~~~  996 (1120)
                      ..+.
T Consensus       519 ~~i~  522 (543)
T 1nir_A          519 AVVK  522 (543)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            8876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=3e-23  Score=238.01  Aligned_cols=242  Identities=10%  Similarity=0.023  Sum_probs=177.4

Q ss_pred             CCCceEEEEecCCCeEEEEEe----CCC----cEEEEec--CCCceeEeeceeeeccCCCCcccccccccCCCCceEEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  433 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~  433 (1120)
                      ...+...+|++.|..++++|+    .||    +|+|||+  .+++.+...                 .+.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence            357888899999988888887    467    8999999  888876432                 2456777777777


Q ss_pred             EcC--------------CCCeEEEEECC------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224          434 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  493 (1120)
Q Consensus       434 ~sp--------------dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~  493 (1120)
                      +++              .+..++.++.+      +.|++||++++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            765              26777777654      799999998654 33   5778999999999999999  6888887


Q ss_pred             CC---cEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEE-EEecCCe--EEEEecCCCCCceeeeCCCCceeEEEE
Q 001224          494 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY  567 (1120)
Q Consensus       494 d~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~  567 (1120)
                      ++   .|++||+.++++. .+..|...+.+++|++  +|+.|+ +++.++.  |++||+.+.+. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999998875 5667888999999865  456666 6666654  99999887543 444445455555555


Q ss_pred             cCCCCeEEecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224          568 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  644 (1120)
Q Consensus       568 s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  644 (1120)
                      +|||                     ++|++++. ++  .|++||+.+++.. .+..+.  ..+.+++|+|||++|++++.
T Consensus       275 spdg---------------------~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          275 FPDS---------------------QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             CTTS---------------------SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred             CCCC---------------------CEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence            5555                     46777765 44  6888899887643 333332  35778999999999988876


Q ss_pred             C---CcEEEEEccCc
Q 001224          645 D---NGIKILATSDG  656 (1120)
Q Consensus       645 d---g~i~iwd~~~~  656 (1120)
                      +   ..|++||+.++
T Consensus       331 ~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          331 NGGQQHIAKQDLATG  345 (415)
T ss_dssp             CSSCEEEEEEETTTC
T ss_pred             cCCceEEEEEECCCC
Confidence            4   46677766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=2.5e-23  Score=238.60  Aligned_cols=303  Identities=11%  Similarity=0.082  Sum_probs=219.4

Q ss_pred             cccCeEEEEEcCCCCceEEEEec----CCC----cEEEEEC--CCCcee--EEeeccccCeEEEeeccC-----------
Q 001224          470 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK-----------  526 (1120)
Q Consensus       470 h~~~V~~v~~s~d~~~~~l~s~s----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~~-----------  526 (1120)
                      +...+...+|++.|.. ++++|+    .||    .|++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3457888899999987 676776    567    8999999  899887  458889888877766531           


Q ss_pred             -CCceEEEEEecC------CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          527 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       527 -~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                       ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|+|                     ++|++++
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg---------------------~~la~~s  197 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG---------------------SKLAYVT  197 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS---------------------SEEEEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC---------------------CEEEEEE
Confidence             013456555543      7999999974 3444444455555555555555                     5788888


Q ss_pred             CCC---eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEE-EEECCCc--EEEEEccCcchhhhhccccccccccc
Q 001224          600 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT  673 (1120)
Q Consensus       600 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~  673 (1120)
                      .++   .|++||+.+++... +..+.  ..+.+++|+|||+.|+ +++.++.  |++||+.++. . ..+          
T Consensus       198 ~~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l----------  262 (415)
T 2hqs_A          198 FESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV----------  262 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC----------
T ss_pred             ecCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC----------
Confidence            775   99999999988764 43332  3688999999999888 5555554  8888876651 1 101          


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224          674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  753 (1120)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  753 (1120)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (415)
T 2hqs_A          263 --------------------------------------------------------------------------------  262 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccEEEEEEcCCCceEEEecc-Cc--eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224          754 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  830 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l  830 (1120)
                      ..+...+.+++|+|||+.|++++. ++  .|++|++                      .++....  +..  +...+.++
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~  316 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDA  316 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEE
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCe
Confidence            114456788999999998888876 45  4444443                      3333222  111  55678899


Q ss_pred             EEccCCCEEEEEe-C---CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeEe
Q 001224          831 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK  903 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~  903 (1120)
                      +|+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++   .|++||+. ++....
T Consensus       317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~  392 (415)
T 2hqs_A          317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR  392 (415)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred             EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence            9999999999887 4   47999999988764 455454 899999999 899888888777   79999986 556788


Q ss_pred             ecccccceEEEEEccCC
Q 001224          904 LKGHSKRITGLAFSHAL  920 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~  920 (1120)
                      +.+|.+.|.+++|+|.-
T Consensus       393 l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          393 LPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCCSSSEEEEEEECCCC
T ss_pred             eeCCCCCCcCCcccccc
Confidence            99999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.1e-22  Score=253.96  Aligned_cols=258  Identities=14%  Similarity=0.087  Sum_probs=174.0

Q ss_pred             CCCceEEEEecCCCeEEEEEeC-CC-----cEEEEecCCCceeEeeceeeec-----cCCCCcccccccccCCCCceEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV  432 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~h~~~V~~l  432 (1120)
                      ...|.+++|||||++ |++++. |+     .|.+||+.+++...........     +...........-......|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            467999999999996 777666 88     8999999998765421110000     00000000000000001348899


Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCC---ceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      +|||||++|++++. +.|.+||+.++   ...    .+..|...+.+++|||||+  +|+.++ ++.|++||+.+++...
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence            99999999999986 99999999988   433    3667888999999999999  577666 4689999999988766


Q ss_pred             EeeccccC----------------eEEEeeccCCCceEEEEEecCC---------------------------------e
Q 001224          510 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K  540 (1120)
Q Consensus       510 ~~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~  540 (1120)
                      ....+...                +.+++|+  +||++|++++.|+                                 .
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            55444432                3556774  5667888887665                                 6


Q ss_pred             EEEEecCC-CCCceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-----CCCeEEEEECCCC
Q 001224          541 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV  612 (1120)
Q Consensus       541 i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~  612 (1120)
                      |.+||+.+ .+......  .+...+                     ..++| |||++|++++     .+..|++||+.++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYL---------------------ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEE---------------------EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EEEEECCCCCceEEecCCCCcceEE---------------------EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence            77788776 54332211  122334                     44555 5555677654     3678999999999


Q ss_pred             ceeEEEecCCCC--CCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          613 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       613 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      +....+..+...  ..+.+++|+|||+++++++.+|.+++|.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            877766543311  135689999999988888888888888653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.2e-22  Score=253.59  Aligned_cols=343  Identities=12%  Similarity=0.018  Sum_probs=224.8

Q ss_pred             CCceEEEEEcCCCCeEEEEEC-CC-----eEEEEEccCCceeeeeeeecccc------------------------cCeE
Q 001224          426 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN  475 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~-dg-----~v~iwd~~~~~~~~~~~~l~~h~------------------------~~V~  475 (1120)
                      ...|.+++|||||++|++++. |+     .|.+||+.+++...   .+..+.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     89999999987543   233332                        2388


Q ss_pred             EEEEcCCCCceEEEEecCCCcEEEEECCCCc--eeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCce
Q 001224          476 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  553 (1120)
Q Consensus       476 ~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  553 (1120)
                      +++|||||+  +|++++. +.|++||+.++.  .+..+..|...+..++|+  +||++|+.++ ++.|++||+.++....
T Consensus       113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            999999999  5777665 999999999883  445677788889999985  4567888887 5699999998754433


Q ss_pred             eeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001224          554 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-------------------------------  602 (1120)
Q Consensus       554 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------------------------  602 (1120)
                      ....+...+..   . ....+. ......+..+.|+|||++|++++.|+                               
T Consensus       187 ~~~~~~~~~~~---g-~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          187 LTADGSTTIGN---G-IAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             CCCCCCSSEEE---S-CCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             eccCCccceec---c-ccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            22222211100   0 000000 00000123344444445555554443                               


Q ss_pred             --eEEEEECCC-CceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC-----CCcEEEEEccCcchhhhhcccccccccccC
Q 001224          603 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS  674 (1120)
Q Consensus       603 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  674 (1120)
                        .|++||+.+ ++.........+...+..++| |||++|+++..     +..|++||+.++. ....+           
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~-----------  328 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLA-----------  328 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEE-----------
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEE-----------
Confidence              789999988 876554432223346889999 99999997764     3456666654431 00000           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224          675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  754 (1120)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  754 (1120)
                                                                                                      
T Consensus       329 --------------------------------------------------------------------------------  328 (741)
T 2ecf_A          329 --------------------------------------------------------------------------------  328 (741)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEcc
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  834 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~  834 (1120)
                                         ....++                                           ....+.+++|+|
T Consensus       329 -------------------~~~~~~-------------------------------------------~~~~~~~~~~sp  346 (741)
T 2ecf_A          329 -------------------HETSPT-------------------------------------------WVPLHNSLRFLD  346 (741)
T ss_dssp             -------------------EEECSS-------------------------------------------CCCCCSCCEECT
T ss_pred             -------------------EcCCCC-------------------------------------------cCCcCCceEECC
Confidence                               000000                                           011234577888


Q ss_pred             CCCEEEEEe-CCcEEEEEcC-CCceeeeecCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEEEEeec-ceeeEeeccc
Q 001224          835 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH  907 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h  907 (1120)
                      ||+++++++ +|.++||.+. ++. ...+..+...+..+ .|+| +++.| ++++.++  .++||++.. ++....+.. 
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-  423 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-  423 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence            888777776 6777777664 344 67777777888887 5999 77655 4555565  899999975 555667765 


Q ss_pred             ccceEEEEEccCCCEEEEEeCC----CCEEEEECCCc
Q 001224          908 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW  940 (1120)
Q Consensus       908 ~~~V~~l~~s~d~~~l~s~s~D----g~v~iWd~~~~  940 (1120)
                      ...+.+++|||||++|+....+    ..+.+|+...+
T Consensus       424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            6678899999999998866544    46888887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=5.7e-23  Score=255.87  Aligned_cols=235  Identities=9%  Similarity=0.065  Sum_probs=165.0

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC---ceEEEEEcCCCCeE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  441 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~l  441 (1120)
                      ..+.+++|||||++ +++ +.||+|++||+.+++...                   ++.+|..   .|.+++|||||++|
T Consensus        17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l   75 (723)
T 1xfd_A           17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA   75 (723)
T ss_dssp             CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred             ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence            34678899999994 666 789999999999987654                   2444554   49999999999999


Q ss_pred             EEEECC---------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          442 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       442 as~~~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      |+++.+         +.+.+||+.+++. +......+|...+.+++|||||+  .|+.++. +.|++||+.+++......
T Consensus        76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence            999875         7888999999875 32223345666799999999999  4676665 799999999988877666


Q ss_pred             ccccCe------------------EEEeeccCCCceEEEEEecC-CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          513 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       513 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      .+...+                  .+++|+  +||+.|++++.| +.+.+|++......     ....+..+.+.++|. 
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-  223 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-  223 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence            544433                  677875  556788877754 56777876532211     112244455544443 


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECC----
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----  645 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d----  645 (1120)
                                          .    ..+..|++||+.+++....+..+.    +...+.+++|+|||+++++....    
T Consensus       224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                1    234589999999988656665331    12357889999999988766532    


Q ss_pred             CcEEEEEccCc
Q 001224          646 NGIKILATSDG  656 (1120)
Q Consensus       646 g~i~iwd~~~~  656 (1120)
                      ..|++||+.++
T Consensus       280 ~~i~~~d~~~g  290 (723)
T 1xfd_A          280 SILTLCDATTG  290 (723)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEeCCCC
Confidence            35666665544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1.3e-21  Score=242.82  Aligned_cols=243  Identities=11%  Similarity=0.102  Sum_probs=170.4

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCC-----CceeeeecCCCCC--------------eEEEEEecCCCcEEEEEe-
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM-  885 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~lasg~-  885 (1120)
                      .+.+++|||||++|+++.++.|++||+.+     ++.......+...              +.+++||| |+++|++++ 
T Consensus       122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~  200 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM  200 (706)
T ss_dssp             CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred             cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence            35556777777777776677788888776     6554443333332              58999999 899999887 


Q ss_pred             --------------------------------CCCcEEEEEeecceeeEeec--ccccceEEEEEccCCCEEEEEeCCC-
Q 001224          886 --------------------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS-  930 (1120)
Q Consensus       886 --------------------------------~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg-  930 (1120)
                                                      .+..|++||+.+++......  .|...+.+++|+|||++|++++.|+ 
T Consensus       201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  280 (706)
T 2z3z_A          201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA  280 (706)
T ss_dssp             ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred             CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence                                            44689999999887654442  5777899999999999999988776 


Q ss_pred             ----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc--CCcEEEEE-eCCeEEEEEcC-CceeeeccccCCCCC
Q 001224          931 ----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSA 1002 (1120)
Q Consensus       931 ----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp--dg~~la~~-~d~~v~i~d~~-~~~~~~~~~~~~h~~ 1002 (1120)
                          .|++||+.+++.............   ...+..++|+|  ||++++++ .++.++||++. ++..+..+.  .|..
T Consensus       281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~---~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~  355 (706)
T 2z3z_A          281 QNECKVNAYDAETGRFVRTLFVETDKHY---VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEW  355 (706)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEECSSC---CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSS
T ss_pred             CCeeEEEEEECCCCceeeEEEEccCCCe---ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCe
Confidence                899999998732211111111111   11346789999  99988886 67788888876 566666554  5566


Q ss_pred             CeeE-EEECCCCcEEEEEEcC-C----cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-
Q 001224         1003 PITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD- 1075 (1120)
Q Consensus      1003 ~v~~-l~~s~dg~~l~s~~~D-g----~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D- 1075 (1120)
                      .+.+ ++|+|||+.|+.++.+ +    .|+.||+.+++.. .+.      .   ...+.  .++|+| |+++|+.+..+ 
T Consensus       356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~  422 (706)
T 2z3z_A          356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT------P---ESGMH--RTQLSP-DGSAIIDIFQSP  422 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC------C---SSSEE--EEEECT-TSSEEEEEEECS
T ss_pred             EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc------C---CCceE--EEEECC-CCCEEEEEecCC
Confidence            7876 7999999988766554 3    6777787777633 332      1   11244  799999 68887766444 


Q ss_pred             ---CcEEEEecCCCC
Q 001224         1076 ---GGVHVFEPLESE 1087 (1120)
Q Consensus      1076 ---g~v~vW~~~~~~ 1087 (1120)
                         +.|++||+.+++
T Consensus       423 ~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          423 TVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SCSCEEEEEESSSCE
T ss_pred             CCCcEEEEEECCCCe
Confidence               469999998775

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=4.1e-21  Score=215.20  Aligned_cols=301  Identities=10%  Similarity=0.138  Sum_probs=200.6

Q ss_pred             ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC-ceEEEeeecccccCCCCccccc
Q 001224          722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS  800 (1120)
Q Consensus       722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~  800 (1120)
                      .+++++.++.|.+|++...........+     .+...+..++|+|+|+.+++++.+ +.+.+|++..            
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------   69 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------   69 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence            3444477999999999642211122221     255678889999999988888876 9999999841            


Q ss_pred             cCceeecCCCCCccc-ccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEc---CCCceeeeecCCCCCeEEEEEe
Q 001224          801 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH  874 (1120)
Q Consensus       801 ~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s  874 (1120)
                              .++.... ..+.   ....+..++|+|+++++++++  ++.|.+||+   ...+....+..+ ..+.+++|+
T Consensus        70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s  137 (343)
T 1ri6_A           70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS  137 (343)
T ss_dssp             --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred             --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence                    1222110 0011   123788999999999887765  688999999   444455555533 458999999


Q ss_pred             cCCCcEEEEEe-CCCcEEEEEeec-ceeeE----eecc-cccceEEEEEccCCCEEEEE-eCCCCEEEEECCC--ccccc
Q 001224          875 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQK  944 (1120)
Q Consensus       875 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~~--~~~~~  944 (1120)
                      | ++++|++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|++++|+.+ ..++.|.+|+++.  ++...
T Consensus       138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            9 888777776 899999999987 64432    2232 34578899999999977554 4889999999964  33221


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcC--C--ceeeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224          945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus       945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~v~i~d~~--~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
                      ................+..++|+|+|++|++ . .++.|.+||+.  +  .+.+..+.  .+. .+.+++|+|||++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence            2222222211111234568999999998876 4 67899999998  3  34444433  223 3899999999999888


Q ss_pred             EE-cCCcEEEEEc--CCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224         1019 CF-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus      1019 ~~-~Dg~v~iwd~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
                      ++ .|+.|.+|++  .++++...-.    ++.|     ..|..++|.|+
T Consensus       294 ~~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~  333 (343)
T 1ri6_A          294 AGQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH  333 (343)
T ss_dssp             ECTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred             ecCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence            88 5799999955  4665432211    2222     23446888873

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.2e-21  Score=240.67  Aligned_cols=249  Identities=7%  Similarity=0.007  Sum_probs=155.5

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCce--eEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      .+..+.|+  |+. +++++.|+ | +||+.+++.  .......  .+.. ...........+...|.+++|||| ++++.
T Consensus        27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred             cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence            35557888  554 55666677 8 999999876  2210000  0000 000000000112257999999999 66666


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC-----CceeEEeeccccC-
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-  517 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~-----~~~~~~~~~h~~~-  517 (1120)
                      +. ++.|++||+.+++...    +..+...+.+++|||||+  .|+++ .|+.|++||+.+     ++.......+... 
T Consensus        98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            64 5999999999886443    556777899999999999  46664 679999999998     8776544444433 


Q ss_pred             -------------eEEEeeccCCCceEEEEEe---------------------------------cCCeEEEEecCCCCC
Q 001224          518 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS  551 (1120)
Q Consensus       518 -------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~  551 (1120)
                                   +.+++|+  +||++|++++                                 .+..|++||+.++..
T Consensus       170 ~~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             EcccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence                         3667775  5668888887                                 346788888876543


Q ss_pred             ceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceeEEEecCCCC
Q 001224          552 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL  624 (1120)
Q Consensus       552 ~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~  624 (1120)
                      .....  .+...                     +..++|+|+|+.|++++.++     .|++||+.+++....+......
T Consensus       248 ~~~~~~~~~~~~---------------------~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          248 VYLQTGEPKEKF---------------------LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EECCCCSCTTCE---------------------EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             EeeccCCCCcee---------------------EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            22111  12233                     44455555556788877665     8999999998433333211111


Q ss_pred             ---CCcCeEEEcC--CCCEEEEEECCCcEEEEEcc
Q 001224          625 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       625 ---~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~  654 (1120)
                         ..+.+++|+|  ||++++++..++.+++|.+.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence               1246789999  99999998888888888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.2e-21  Score=240.10  Aligned_cols=277  Identities=10%  Similarity=0.046  Sum_probs=185.3

Q ss_pred             cEEEEEEcCCCceEEEeccC---------ceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          759 KISRLIFTNSGNAILALASN---------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                      .|.+++|||||++|++++.+         +.+++||+                      .++..... .....+...+..
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~----------------------~~~~~~~l-~~~~~~~~~~~~  118 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI----------------------PHGDPQSL-DPPEVSNAKLQY  118 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES----------------------SSCCCEEC-CCTTCCSCCCSB
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEEC----------------------CCCceEec-cCCccccccccc
Confidence            36789999999999988775         45556655                      44443111 111125556889


Q ss_pred             EEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCe------------------EEEEEecCCCcEEEEEeCCC---
Q 001224          830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA------------------TFLAFHPQDNNIIAIGMDDS---  888 (1120)
Q Consensus       830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i------------------~~l~~sp~d~~~lasg~~dg---  888 (1120)
                      ++|||||++|+.++++.|++||+.+++.......+...+                  .+++||| ||++||+++.|+   
T Consensus       119 ~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~  197 (723)
T 1xfd_A          119 AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV  197 (723)
T ss_dssp             CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred             cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence            999999999999999999999999888766655444333                  7899999 899999887553   


Q ss_pred             -------------------------------cEEEEEeecceeeEeeccc------ccceEEEEEccCCCEEEEEeC---
Q 001224          889 -------------------------------SIQIYNVRVDEVKSKLKGH------SKRITGLAFSHALNVLVSSGA---  928 (1120)
Q Consensus       889 -------------------------------~v~vwd~~~~~~~~~l~~h------~~~V~~l~~s~d~~~l~s~s~---  928 (1120)
                                                     .|++||+.+++....+..|      ...+.+++|||||++|++.+.   
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  277 (723)
T 1xfd_A          198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ  277 (723)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred             ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence                                           7999999988765666654      677999999999999877653   


Q ss_pred             -CCCEEEEECCCcccccceeeecc-CCCCCCCCCCcEEEEccCCcEEEE--E-eCC------eEEEEE-cCCce--eeec
Q 001224          929 -DSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLV--V-HET------QLAIFE-TTKLE--CVKQ  994 (1120)
Q Consensus       929 -Dg~v~iWd~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~fspdg~~la~--~-~d~------~v~i~d-~~~~~--~~~~  994 (1120)
                       +..|++||+.+++...  ..... .+...  .....++|+|||+.|+.  + .++      .|.+|| ..++.  +...
T Consensus       278 ~~~~i~~~d~~~g~~~~--~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  353 (723)
T 1xfd_A          278 NVSILTLCDATTGVCTK--KHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS  353 (723)
T ss_dssp             CEEEEEEEETTTCCEEE--EEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred             CeEEEEEEeCCCCcceE--EEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence             3579999999875422  11111 11100  00137899999997775  2 455      466777 34444  1444


Q ss_pred             cccCCCCCCeeE-EEECCCCcEEEEEEcC---CcEEEEEcCCcc--eeeeeCCCcccCCCCCCCCccceEEEecCCCCCE
Q 001224          995 WVPRESSAPITH-ATFSCDSQLVYACFLD---ATVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1068 (1120)
Q Consensus       995 ~~~~~h~~~v~~-l~~s~dg~~l~s~~~D---g~v~iwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~ 1068 (1120)
                      +.  .+...+.. ++|||||++|+..+.+   +.++||+++...  ....+.  ....  | ...+.  .++|+| |+++
T Consensus       354 l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~--~~~~--~-~~~~~--~~~~sp-dg~~  423 (723)
T 1xfd_A          354 IT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS--CDLV--E-NCTYF--SASFSH-SMDF  423 (723)
T ss_dssp             SC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS--TTSS--S-SCCCC--EEEECT-TSSE
T ss_pred             ee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec--cccc--C-CCCeE--EEEECC-CCCE
Confidence            43  22344554 6999999999876655   789999987532  222222  0000  1 12244  799999 5777


Q ss_pred             EEEEe
Q 001224         1069 FALGL 1073 (1120)
Q Consensus      1069 l~s~~ 1073 (1120)
                      |+...
T Consensus       424 l~~~~  428 (723)
T 1xfd_A          424 FLLKC  428 (723)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=2e-20  Score=209.64  Aligned_cols=245  Identities=11%  Similarity=0.144  Sum_probs=174.2

Q ss_pred             CCCCccEEEEccCCCEEEEEe-C-CcEEEEEcC--CCc--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEe
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV  895 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~  895 (1120)
                      +...+.+++|+|+++++++++ + +.|.+|++.  +++  .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            556788899999999998887 4 899999997  444  334455434 789999999 788776555 4889999999


Q ss_pred             ---ecceeeEeecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCC-cccccce--eeeccCCCCCCCCCCcEEEEcc
Q 001224          896 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       896 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                         .+.+.+..+..+ ..+.+++|+|||++|++++ .|+.|.+||+.+ ++.....  ......+     ..+..++|+|
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p  187 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP  187 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence               555566666654 3588999999999888777 899999999987 4332111  1222222     2567899999


Q ss_pred             CCcEEEE-E-eCCeEEEEEcCC--cee--eeccc--cCCC--CCCeeEEEECCCCcEEEEEE-cCCcEEEEEcC--Cc--
Q 001224          969 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--NL-- 1033 (1120)
Q Consensus       969 dg~~la~-~-~d~~v~i~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~--~~-- 1033 (1120)
                      +|+++++ + .++.|.+|++..  ++.  .....  ..++  ...+..++|+|||++|+++. .|+.|++||+.  ++  
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            9998766 4 678999999954  332  11111  1111  34677899999999887554 78999999998  33  


Q ss_pred             ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCCCC
Q 001224         1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus      1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
                      +.+..+.      .+  ..   +..++|+| |+++|++++ .|+.|.+|++....
T Consensus       268 ~~~~~~~------~~--~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          268 SKEGFQP------TE--TQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEEEEEE------CS--SS---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEeeeec------CC--Cc---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence            3333333      11  11   33799999 688887777 68999999776433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=7e-20  Score=204.04  Aligned_cols=239  Identities=13%  Similarity=0.082  Sum_probs=171.9

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC-CC
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH  448 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-dg  448 (1120)
                      ..|.+++.+++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457788888899999999999999999987653                   22345556 9999999998777766 88


Q ss_pred             eEEEEEccCCce-eeeeeeecccccCeEEEEEcCCCCceEEEEecCC-C--cEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          449 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       449 ~v~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      .|.+||..+++. ..   .+..+..+..+++|+|+|+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999875 33   4555666666699999999  46655544 3  8999999999998887754 446788886


Q ss_pred             cCCCce-EEEEEecCCe-EEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE-EeCC
Q 001224          525 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDD  601 (1120)
Q Consensus       525 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d  601 (1120)
                      +  +|+ ++++...++. |.+|++...+......        ....+.+         .....++++|+++++++ +..+
T Consensus       137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred             C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence            5  445 4445555678 9999998654332111        0000111         13456677777776655 4568


Q ss_pred             CeEEEEECCCCce---eEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224          602 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  656 (1120)
Q Consensus       602 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  656 (1120)
                      +.|++||+.+++.   +..+...   ..+..++|+|||++++++. .++.|.+||..++
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            9999999999988   7777644   3478899999999877665 4778999998776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=3.2e-20  Score=206.80  Aligned_cols=285  Identities=13%  Similarity=0.068  Sum_probs=196.5

Q ss_pred             EEcCCCce-EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001224          764 IFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  842 (1120)
Q Consensus       764 ~~s~~g~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~  842 (1120)
                      .|.+++.. +++.+.++.|.+||..                      +++...... .  +...+ .++|+|+|++++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~~   57 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVVT   57 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEEE
Confidence            45555554 5666778899988763                      333322211 1  34445 99999999977766


Q ss_pred             e--CCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeEeecccccceEEEEE
Q 001224          843 S--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLAF  916 (1120)
Q Consensus       843 s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~~  916 (1120)
                      +  ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++   .|++||+.+++.+..+..+ ....+++|
T Consensus        58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~  135 (331)
T 3u4y_A           58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAI  135 (331)
T ss_dssp             ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEE
T ss_pred             eCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEE
Confidence            5  68999999999887 666766666555599999 888888655553   8999999999888877654 44689999


Q ss_pred             ccCCCEEEE-EeCCCC-EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCcee-
Q 001224          917 SHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-  991 (1120)
Q Consensus       917 s~d~~~l~s-~s~Dg~-v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~-  991 (1120)
                      +|||++|++ ...++. |.+|+++...............    ...+..++|+|||++++++  .++.|.+||+.+++. 
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI  211 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence            999986554 455688 9999998643221111111111    1246899999999977664  578999999999887 


Q ss_pred             --eeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcce--eeeeCCCcccCCCCCCCCccceEEEecCCCC
Q 001224          992 --VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1066 (1120)
Q Consensus       992 --~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~ 1066 (1120)
                        +..+.   +...+..++|+|||++|++++ .++.|.+||+.+++.  +..+......... .....  ..++|+| |+
T Consensus       212 ~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~sp-dg  284 (331)
T 3u4y_A          212 TLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-PLFGA--NQMALNK-TE  284 (331)
T ss_dssp             EEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-GGTTC--CCEEECT-TS
T ss_pred             ceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC-Ccccc--cceEECC-CC
Confidence              66654   246778999999999877665 478899999999988  3332211000000 00001  2589999 57


Q ss_pred             CEEEEE-eCCCcEEEEecCCCC
Q 001224         1067 NEFALG-LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1067 ~~l~s~-~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++|+++ ..++.|.+|++.+..
T Consensus       285 ~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          285 TKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SEEEEEETTTTEEEEEETTSCE
T ss_pred             CEEEEecCCCCcEEEEEecCCc
Confidence            777554 556799999998766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=6.3e-20  Score=204.95  Aligned_cols=197  Identities=13%  Similarity=0.068  Sum_probs=150.7

Q ss_pred             cEEEEccCCCEEEEE-------------eCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          828 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~-------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                      .+++|+|+|++++++             .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d  160 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD  160 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence            345566666655555             358899999999888777764 45688899999 88888777  68999999


Q ss_pred             eecceeeEeecccccceEEEEEccCCCEEEEEeCCC------------------------CEEEEECCCcccccceeeec
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI  950 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------~v~iWd~~~~~~~~~~~~~~  950 (1120)
                      +.+++.+..+..+... ..+.|+||++.|+..+.++                        .|.+||+.+++.. ..... 
T Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~-  237 (337)
T 1pby_B          161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR-  237 (337)
T ss_dssp             TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred             CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence            9999888777654411 1337899998776554332                        3689999887653 11111 


Q ss_pred             cCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          951 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       951 ~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                        .+.   ..+..++|+|||++++++ ++.|.+||+.+++.+..+..   ...+.+++|+|||++|++++.++.|++||+
T Consensus       238 --~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          238 --IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             --ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             --CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence              111   246789999999999988 79999999999988877653   346889999999999999999999999999


Q ss_pred             CCcceeeeeC
Q 001224         1031 ANLKLRCRIN 1040 (1120)
Q Consensus      1031 ~~~~~~~~~~ 1040 (1120)
                      .+++.+..+.
T Consensus       309 ~~~~~~~~~~  318 (337)
T 1pby_B          309 ETLEKKGQVD  318 (337)
T ss_dssp             TTCCEEEEEE
T ss_pred             cCCcEEEEEE
Confidence            9999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=1.9e-19  Score=202.50  Aligned_cols=273  Identities=11%  Similarity=0.104  Sum_probs=204.9

Q ss_pred             cccEEEEEEcCCCceEEEecc-------CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccE
Q 001224          757 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  829 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~  829 (1120)
                      ...+..++|+|+++.+++++.       ++.|.+||.                      .+++......    ....+..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~----------------------~~~~~~~~~~----~~~~~~~   93 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP----------------------VTLEVTQAIH----NDLKPFG   93 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT----------------------TTCCEEEEEE----ESSCCCS
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC----------------------CCCeEEEEEe----cCCCcce
Confidence            356788999999998887774       456776664                      3443322211    2334678


Q ss_pred             EEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCC---------eEEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001224          830 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  896 (1120)
Q Consensus       830 l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~  896 (1120)
                      ++++|+|++++++.  ++.|.+||..+++.+..+..+...         +.+++|+| +++++++++  .++.|.+||..
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence            99999999776665  689999999999988877654322         78999999 777666665  47899999999


Q ss_pred             cceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          897 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       897 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      +++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++.....  ..  +.......+..++|+|+|++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence            99998888867777899999999999999999999999999986543221  11  111111356789999999988774


Q ss_pred             --eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224          977 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus       977 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
                        .++.|.+||..+++.+..+...    ....++|+|||+++++++ .++.|.+||..+++.+..+..    +       
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~-------  313 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----P-------  313 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC----C-------
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec----C-------
Confidence              4589999999999988777642    225799999999776666 689999999999999887651    1       


Q ss_pred             ccceEEEecCCCCCEEEEEeCCC
Q 001224         1054 VHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus      1054 v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
                      ..+..++|+| |+++|+++..++
T Consensus       314 ~~~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          314 THPNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             SEEEEEEECT-TSCEEEEEEECC
T ss_pred             CCCCeEEEcC-CCCEEEEEEccc
Confidence            1244899999 678776666553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=2e-19  Score=202.39  Aligned_cols=250  Identities=11%  Similarity=0.076  Sum_probs=181.9

Q ss_pred             ccCCCCceEEEEecCCCeEEEEEeC------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          361 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       361 ~~h~~~v~~v~~spdg~~lla~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ......+..++|+|+|++++++...      ++.|.+||..+++.+....                    ....+..++|
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   96 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI   96 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence            3456788999999999975555533      6789999999998765311                    1234778999


Q ss_pred             cCCCCeEEEE-ECCCeEEEEEccCCceeeeeeeeccccc---------CeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          435 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       435 spdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      +|||++++++ ..++.|.+||..+++.+..   +..+..         .+.+++|+|+|+.+++...+.++.|.+||..+
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            9999966655 5579999999999886653   333322         27899999999963333324688999999999


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      ++.+..+..+...+.+++|++  ++.++++++.++.|.+||..+.+....+.....          +       ....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~  234 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFI  234 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEE
T ss_pred             CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccc
Confidence            999988876666677788754  557888899999999999987665544433110          0       011233


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCc
Q 001224          585 VVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  656 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  656 (1120)
                      .++++|+++++++++ .++.|.+||..+++.+..+....    ...++|+|+|++++++. .++.|.+||..++
T Consensus       235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            455555556666655 45999999999999888887532    35699999999776666 6899999998766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=4.2e-20  Score=206.33  Aligned_cols=267  Identities=12%  Similarity=0.070  Sum_probs=197.7

Q ss_pred             ceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC-CccEEEEccCCCEEEEEe--CCc
Q 001224          770 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK  846 (1120)
Q Consensus       770 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~s--dg~  846 (1120)
                      .++++++.++.|.+||+.+                      ++.......+  +.. .+..++|+|++++++++.  ++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~   57 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES   57 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred             cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence            3578888899999988632                      2222111100  111 477899999998776554  689


Q ss_pred             EEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEEEEEe------------CCCcEEEEEeecceeeEeeccccc
Q 001224          847 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK  909 (1120)
Q Consensus       847 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~  909 (1120)
                      |.+||+.+++.+..+....     ..+.+++|+| ++++|+++.            .++.|++||+.+++.+..+.. ..
T Consensus        58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence            9999999998877665321     2577899999 888888876            579999999999888777765 45


Q ss_pred             ceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe--CC--------
Q 001224          910 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET--------  979 (1120)
Q Consensus       910 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~--d~--------  979 (1120)
                      .+.+++|+|||++|+++  ++.|.+||+.+++..     .......    ....+.|+|||++++++.  ++        
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQS----WEAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTT----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeeccc----cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence            67889999999988887  688999999986532     1111111    012237899988776531  22        


Q ss_pred             ---------------eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcc
Q 001224          980 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1044 (1120)
Q Consensus       980 ---------------~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~ 1044 (1120)
                                     .|.+||+.+++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++.+..+..   
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---  278 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---  278 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred             cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence                           4789999998876 44444566788999999999999988  79999999999998877651   


Q ss_pred             cCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001224         1045 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1088 (1120)
Q Consensus      1045 ~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1088 (1120)
                       ..     .+  ..++|+| |+++|++++.|+.|.+||+.+++.
T Consensus       279 -~~-----~~--~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          279 -PH-----SY--YSVNVST-DGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             -SS-----CC--CEEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred             -CC-----ce--eeEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence             11     13  3799999 688898899999999999999883

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=1.7e-19  Score=202.33  Aligned_cols=246  Identities=11%  Similarity=0.140  Sum_probs=167.6

Q ss_pred             CCCCccEEEEccCCCEEEEEe---CCcEEEEEcCCCc--eeeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR  896 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~  896 (1120)
                      +...+..++|+|||+.++++.   ++.|++|++.+++  .+..+..+...+..++|+| |+++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            445677899999999443433   3789999997665  3444455677889999999 888888777 78999999996


Q ss_pred             c-c--eeeEeecc---------cccceEEEEEccCCCEEEEEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCcE
Q 001224          897 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR  963 (1120)
Q Consensus       897 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~~  963 (1120)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 2  33333321         12348899999999977777778899999998 433221111122222     24578


Q ss_pred             EEEccCCcEEEEE--eCCeEEEEEcCC--ceee--eccccCCC----CCCeeEEEECCCCcEEE-EEEcCCcEEEEEcCC
Q 001224          964 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1032 (1120)
Q Consensus       964 ~~fspdg~~la~~--~d~~v~i~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~~~Dg~v~iwd~~~ 1032 (1120)
                      ++|+|||++++++  .++.|.+|++..  ++..  ..+.....    ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999977774  578999999874  4432  22211110    14588999999999875 455689999999973


Q ss_pred             -c--ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-CcEEEEecCC
Q 001224         1033 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLE 1085 (1120)
Q Consensus      1033 -~--~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-g~v~vW~~~~ 1085 (1120)
                       +  +.+..+.      .+  +  ..+..++|+| |+++|++++.+ +.|.+|++..
T Consensus       272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence             2  3333332      11  1  2234899999 68888777654 8999996543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.1e-19  Score=198.58  Aligned_cols=234  Identities=13%  Similarity=0.031  Sum_probs=172.9

Q ss_pred             CCCCccEEEEccCCCEEEEEeCCcEEEEEcCC-CceeeeecCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEeec-
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV-  897 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~-  897 (1120)
                      |...+.+++|+|+|+++++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++  .++.+.||.+.. 
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence            67789999999999999999999999999998 8777666555 36789999999 899999988  445666766643 


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEE-EEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      +.....+..+. .+..++|+||+++|+ +++.|+.++||+++.....   . .....+.   ..+.+++|+|+|++|+++
T Consensus       119 ~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~-~~~~~~~---~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          119 GGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---E-TRLTHGE---GRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             CCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---E-EECCCSS---SCEEEEEECTTSSEEEEE
T ss_pred             CCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---c-eEcccCC---CccccceECCCCCEEEEE
Confidence            22244455443 488999999999887 7888999999996542211   1 1122222   367899999999988874


Q ss_pred             --eCCeEEEEEcC-CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----------CcEEEEEcCCcceeeeeCCC
Q 001224          977 --HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPS 1042 (1120)
Q Consensus       977 --~d~~v~i~d~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----------g~v~iwd~~~~~~~~~~~~~ 1042 (1120)
                        .++.+++|++. .+.....+.  .|...+.+++|+|||++|++++.+           +.|++||+.+++......  
T Consensus       191 ~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--  266 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD--  266 (297)
T ss_dssp             ECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE--
T ss_pred             ecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec--
Confidence              47889999886 444444444  567789999999999999988876           569999999987644332  


Q ss_pred             cccCCCCCCCCccceEEEecCCCCCEEEEEeCCC
Q 001224         1043 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1076 (1120)
Q Consensus      1043 ~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg 1076 (1120)
                        .. +| ...+.  .++|+| |+++|++++.|.
T Consensus       267 --~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          267 --LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             --EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred             --cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence              11 11 12244  688999 688888777664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2.2e-18  Score=197.91  Aligned_cols=314  Identities=13%  Similarity=0.151  Sum_probs=199.7

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      ..+..+++++++..+++++.++ +++|+.........  . ......+........       ..+...|.+++|+|+|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~  105 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL  105 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence            4577899999999999988887 88887642211000  0 000000000000000       12567899999999999


Q ss_pred             EEE----EEe-CCcEEEEEcCCC--------ce---eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          838 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       838 ~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      +|+    +++ |+.|++||+.++        +.   ...+.+|...|.+++|+|+++.+||+|+.||+|++||+.++..+
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence            999    666 899999998754        11   35567789999999999954899999999999999999998777


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCC-CCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVV--HE  978 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fspdg~~la~~--~d  978 (1120)
                      ....+|...|++++|+|+|++|++|+.||+|++||++ ++..  ..+..... .......|.+++|++++.++++.  .+
T Consensus       186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~--~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d  262 (434)
T 2oit_A          186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK--KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD  262 (434)
T ss_dssp             EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE--EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred             eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc--ccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence            7778899999999999999999999999999999998 3221  11111111 00111368999999999988773  44


Q ss_pred             C------eEEEEEcCCcee-----eecccc-----CCCCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCcc--e-eee
Q 001224          979 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLK--L-RCR 1038 (1120)
Q Consensus       979 ~------~v~i~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~~--~-~~~ 1038 (1120)
                      |      .+++|++.+.+.     ...+..     .+...+-..+.+-+|.+++++++.. +.|.|.......  . ...
T Consensus       263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~  342 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL  342 (434)
T ss_dssp             CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred             CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence            3      399999976521     111110     0112233344444777877766643 446666543211  0 000


Q ss_pred             eC--CCcccCCCCCCCCccceEEEec--CCC------------CCEEEEEeCCCcEEEEecCC
Q 001224         1039 IN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1039 ~~--~~~~~~~g~~~~~v~~~~i~~~--p~d------------~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      +.  ....+|-........|+.+++.  ..+            ...|..-+.||.|..|.+-.
T Consensus       343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            00  0111222112233455555543  111            24678888999999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=5e-19  Score=193.36  Aligned_cols=241  Identities=14%  Similarity=0.095  Sum_probs=170.3

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCC-CceeEeeceeeeccCCCCcccccccccCC-CCceEEEE
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVI  433 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~  433 (1120)
                      +...+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++...                   +..+| ...|.+++
T Consensus        33 ~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           33 KMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHG   91 (297)
T ss_dssp             EEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCE
T ss_pred             ceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceE
Confidence            34556678999999999999996 66665 78999999998 76543                   23334 47899999


Q ss_pred             EcCCCCeEEEEE--CCCeEEEEEc--cCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC-CCcee
Q 001224          434 WSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQ  508 (1120)
Q Consensus       434 ~spdg~~las~~--~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~-~~~~~  508 (1120)
                      |+|||++|++++  .++.+.||.+  .++. ..   .+..+ ..+..++|+||++. ++++++.|+.++||++. .+...
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~  165 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVE  165 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcc
Confidence            999999999998  4455566555  4544 22   24333 35999999999995 34478889999999964 23445


Q ss_pred             EEeeccccCeEEEeeccCCCceEEEEEe-cCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEE
Q 001224          509 YIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  586 (1120)
Q Consensus       509 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~  586 (1120)
                      ..+..|...+.+++|++  ++.+|+.++ .++.+++|+++. ......+..+...+..+                     
T Consensus       166 ~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------------  222 (297)
T 2ojh_A          166 TRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP---------------------  222 (297)
T ss_dssp             EECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE---------------------
T ss_pred             eEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe---------------------
Confidence            66777888999999865  456666555 589999998873 33444444444344444                     


Q ss_pred             EEcCCCCEEEEEeCC-----------CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001224          587 QFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                      .|+|++++|++++.+           +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus       223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            455555577776654           569999999887644433222234688999999999998887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.4e-18  Score=194.85  Aligned_cols=279  Identities=13%  Similarity=0.132  Sum_probs=183.2

Q ss_pred             CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc---CceEEEeeecccccCCCCccccccCce
Q 001224          728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ  804 (1120)
Q Consensus       728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~  804 (1120)
                      .++.+.+|+++....  ....+..  ..+...+..++|+|+|+ +++++.   ++.|.+|++......            
T Consensus        14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------   76 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------   76 (347)
T ss_dssp             SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred             CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence            356688888865221  1111111  12445667899999999 665554   589999987432110            


Q ss_pred             eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcC-CC--ceeeeecC---------CCCCeEE
Q 001224          805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TF--KTMATFMP---------PPPAATF  870 (1120)
Q Consensus       805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~-~~--~~~~~~~~---------~~~~i~~  870 (1120)
                              .+.. +.  .+...+..++|+|||++|++++  ++.|.+|++. ++  ..+..+..         +...+.+
T Consensus        77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  145 (347)
T 3hfq_A           77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY  145 (347)
T ss_dssp             --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred             --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence                    0000 00  1456688999999999888887  6889999996 22  22333321         1234889


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEee-cceee--Eeeccc-ccceEEEEEccCCCEEEE-EeCCCCEEEEECCC--cccc
Q 001224          871 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ  943 (1120)
Q Consensus       871 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~v~iWd~~~--~~~~  943 (1120)
                      ++|+| ++++++++..++.|++|++. +++..  ..+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++..
T Consensus       146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999 77777777778899999998 45432  222222 236788999999996655 56788999999885  3322


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcCC-c--eeeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~-~d~~v~i~d~~~-~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
                      .................+..++|+|||++|++ . .++.|.+|++.. +  +.+..+.  .+...+..++|+|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence            22222222221111134688999999998865 3 578999999973 2  3343333  44567899999999999988


Q ss_pred             EEcC-CcEEEE--EcCCcceee
Q 001224         1019 CFLD-ATVCVF--SAANLKLRC 1037 (1120)
Q Consensus      1019 ~~~D-g~v~iw--d~~~~~~~~ 1037 (1120)
                      ++.+ +.|.+|  |..++++..
T Consensus       303 ~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          303 VNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EETTTTEEEEEEECTTTCCEEE
T ss_pred             EEcCCCcEEEEEEeCCCCeEEe
Confidence            8865 899999  556677653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=5.3e-19  Score=219.64  Aligned_cols=334  Identities=11%  Similarity=0.044  Sum_probs=216.9

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC-CCCcCeEEEcCCCCEEEEEEC---------CCcEEEEEccC
Q 001224          586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD  655 (1120)
Q Consensus       586 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~  655 (1120)
                      +.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++.         ++.|++||+.+
T Consensus        21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            45666663 55556799999999999988777654321 013789999999999998876         67888888876


Q ss_pred             cchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceee
Q 001224          656 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  735 (1120)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw  735 (1120)
                      +. .....                                                                        
T Consensus       100 g~-~~~~~------------------------------------------------------------------------  106 (719)
T 1z68_A          100 GE-FVRGN------------------------------------------------------------------------  106 (719)
T ss_dssp             TE-ECCSS------------------------------------------------------------------------
T ss_pred             Cc-cccce------------------------------------------------------------------------
Confidence            62 10000                                                                        


Q ss_pred             ecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCccc
Q 001224          736 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  815 (1120)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~  815 (1120)
                                  .       -...+..++|||||+.|+.+. ++.|++|++..+...           ++-  ..+....
T Consensus       107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-----------~l~--~~~~~~~  153 (719)
T 1z68_A          107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-----------QIT--FNGRENK  153 (719)
T ss_dssp             ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-----------ECC--CCCBTTT
T ss_pred             ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-----------EEe--cCCCcCC
Confidence                        0       002345688999999888775 678888877432110           000  0000000


Q ss_pred             ccCCCCCCC---------CCccEEEEccCCCEEEEEe-CC----------------------------------cEEEEE
Q 001224          816 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN  851 (1120)
Q Consensus       816 ~~~~~~~~~---------~~v~~l~~s~d~~~l~~~s-dg----------------------------------~i~vwd  851 (1120)
                       .+.  ++.         ....+++|||||++|++++ |.                                  .|++||
T Consensus       154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence             000  011         2235899999999999987 42                                  788999


Q ss_pred             cCCCcee--------eeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEE----eecceeeEee----cccccce
Q 001224          852 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKRI  911 (1120)
Q Consensus       852 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd----~~~~~~~~~l----~~h~~~V  911 (1120)
                      +.+++..        ..+.+|...+..++|+| |++++++....+    .|++||    +.++++...+    .+|...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~  309 (719)
T 1z68_A          231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA  309 (719)
T ss_dssp             SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred             CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence            9987653        22345777899999999 788877754332    488899    7778776666    4677777


Q ss_pred             E-----EEEEccCCCEEEE--EeCCCC--EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeC---
Q 001224          912 T-----GLAFSHALNVLVS--SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE---  978 (1120)
Q Consensus       912 ~-----~l~~s~d~~~l~s--~s~Dg~--v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d---  978 (1120)
                      .     .+.|+|||+.|+.  ...+|.  |.+|++.+++.   ..+   ..+.   ..+..+.++ +++.|+. +.+   
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~---~~l---t~~~---~~v~~~~~~-d~~~i~~~~~~~~~  379 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA---IQI---TSGK---WEAINIFRV-TQDSLFYSSNEFEE  379 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC---EEC---SCSS---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce---Eec---ccCc---eEEEEEEEE-eCCEEEEEEecCCC
Confidence            6     8999999996654  445664  66667666431   111   1111   246677777 8887776 443   


Q ss_pred             --CeEEEEEcCC--cee-eeccc--cCCCCCCeeEEEECCCCcEEEEEE-cC--CcEEEEEcCCcceeeeeC
Q 001224          979 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYACF-LD--ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       979 --~~v~i~d~~~--~~~-~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~-~D--g~v~iwd~~~~~~~~~~~ 1040 (1120)
                        +..++|.+..  +.. ...+.  ..+|...+..+.|||||++++..+ .+  ..+++||+.+++.+..+.
T Consensus       380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence              6788888754  321 12221  123567788999999999877543 33  468999999988665554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=4.6e-19  Score=220.18  Aligned_cols=230  Identities=13%  Similarity=0.109  Sum_probs=150.8

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC---ceEEEEEcCCCCeEEEEE
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~~  445 (1120)
                      .++|+|||+ ++++ +.|++|++||+.+++....                   +.+|..   .|.+++|||||++||+++
T Consensus        20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~   78 (719)
T 1z68_A           20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES   78 (719)
T ss_dssp             CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred             ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence            679999996 4555 4699999999999886542                   233322   489999999999999987


Q ss_pred             C---------CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccc
Q 001224          446 S---------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE  515 (1120)
Q Consensus       446 ~---------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~  515 (1120)
                      .         ++.|++||+.+++.+.. ..+   ...+.+++|||||+.  |+.+. |+.|++||+.+++..... .++.
T Consensus        79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           79 DYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             cCceeEEeecceEEEEEECCCCccccc-eec---CcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence            6         78999999999875210 012   256899999999994  66664 789999999988775432 2333


Q ss_pred             cCe-----------------EEEeeccCCCceEEEEEecCC----------------------------------eEEEE
Q 001224          516 APV-----------------YSVCPHHKENIQFIFSTALDG----------------------------------KIKAW  544 (1120)
Q Consensus       516 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw  544 (1120)
                      ..|                 .+++|+  +||++|++++.|.                                  .|++|
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            322                 367774  5668898887652                                  56677


Q ss_pred             ecCCCCCc--ee------eeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC----CeEEEEE----
Q 001224          545 LYDNLGSR--VD------YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----FSIKFWD----  608 (1120)
Q Consensus       545 d~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----  608 (1120)
                      |+.+....  ..      +..+...+.                     .++|+||+..+++....    ..|++||    
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFS---------------------WLTWVTDERVCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEE---------------------EEEESSSSEEEEEEEESSTTEEEEEEEEECSS
T ss_pred             ECCCCCccceeEccCCccCCCCcceEE---------------------EeEEeCCCeEEEEEeccccCeEEEEEEcccCC
Confidence            76654321  01      112333344                     44555554445553322    3488999    


Q ss_pred             CCCCceeEEE----ecCCCCCCcC-----eEEEcCCCCEEEE--EECCCcEEEE
Q 001224          609 MDSVQLLTSI----DADGGLPASP-----RIRFNKDGCLLAV--STNDNGIKIL  651 (1120)
Q Consensus       609 ~~~~~~~~~~----~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~i~iw  651 (1120)
                      ..+++....+    ..+.  ..+.     .++|+|||+.++.  +..+|...+|
T Consensus       289 ~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             SSSEECCGGGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred             CCCCceEEEEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence            8777655444    2222  2344     7899999996554  4455544443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.8e-18  Score=208.78  Aligned_cols=233  Identities=14%  Similarity=0.116  Sum_probs=156.6

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCC-----ceEEEEEcCCCC
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS  439 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~  439 (1120)
                      ....+++|+|||+ +++++  ||+|++||+.+++...                   ++.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence            3456899999998 47776  8999999999998654                   2333432     335589999999


Q ss_pred             eEEEEECC---------CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          440 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       440 ~las~~~d---------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      +|++++.+         +.+.+||+.+++...    +..|.+.+..++|||||+.  |+.+ .|+.|++||+.++...+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence            99999876         566799999987543    6778889999999999995  5655 468999999988876542


Q ss_pred             -eeccccCe-----------------EEEeeccCCCceEEEEEecCC-eEEEEecCCCCCceeeeCCCCceeEEEEcCCC
Q 001224          511 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  571 (1120)
Q Consensus       511 -~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g  571 (1120)
                       ..++...+                 ..+.|  ++||+.|+.++.|. .+.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             23333333                 23566  56678888887654 48888764322110   122334445555544


Q ss_pred             CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCC---Cc--eeEEEecC----CCCCCcCeEEEcCCCCEEEEE
Q 001224          572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~  642 (1120)
                      .                     .    .....|++||+.+   ++  ....+...    .+...+..++|+|||+.++..
T Consensus       223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence            3                     1    1123689999998   73  22333321    133457889999999976655


Q ss_pred             ECC----CcEEEEEccCc
Q 001224          643 TND----NGIKILATSDG  656 (1120)
Q Consensus       643 ~~d----g~i~iwd~~~~  656 (1120)
                      ...    ..|++||+.++
T Consensus       278 ~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             EESSTTEEEEEEEEEETT
T ss_pred             eCCCCCEEEEEEEECCCC
Confidence            432    35777877665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=6.5e-18  Score=193.95  Aligned_cols=266  Identities=14%  Similarity=0.076  Sum_probs=169.7

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE-
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-  442 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-  442 (1120)
                      ...++.+++++++. ++++|+.|+ |+||+...-......   ..+. .............|...|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            35689999999999 488888887 899886421110000   0000 0000000111234677899999999999999 


Q ss_pred             ---EEECCCeEEEEEccCC--------ceeeeeeeecccccCeEEEEEcCC-CCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          443 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       443 ---s~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                         +|+.|+.|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7888999999999865        222334467789999999999998 55  799999999999999999988777


Q ss_pred             eeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          511 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       511 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                      ..+|...|.+++|+++  |.+|++|+.||.|++||++ ......+..+...              ...+...+..+.|++
T Consensus       188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~--------------~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY--------------ESDHPVRVLDVLWIG  250 (434)
T ss_dssp             EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTC--------------CTTSCEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCccc--------------CCCCceeEEEEEEec
Confidence            7889999999999654  6899999999999999987 3333333222110              000011334444444


Q ss_pred             CCCEEEE-EeCCC------eEEEEECCCCc-----eeEEEecC-----CCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEE
Q 001224          591 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA  652 (1120)
Q Consensus       591 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd  652 (1120)
                      ++.++++ ...+|      .+++|++....     ....+...     ........+.+-++.+++++++. .+.|.++.
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence            4445544 33343      38999997652     11222111     11111112333366677666654 45567766


Q ss_pred             cc
Q 001224          653 TS  654 (1120)
Q Consensus       653 ~~  654 (1120)
                      ..
T Consensus       331 ~~  332 (434)
T 2oit_A          331 RQ  332 (434)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=3e-18  Score=192.28  Aligned_cols=236  Identities=13%  Similarity=0.093  Sum_probs=179.2

Q ss_pred             EEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeEeec
Q 001224          829 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            346778888888887 8999999999998888776443 2578999999 77654 555678999999999998877765


Q ss_pred             cc------ccceEEEEEccCCCEEEEEeCC------------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEc
Q 001224          906 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  967 (1120)
Q Consensus       906 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs  967 (1120)
                      .+      ...+.+++|+|||++|++++.+            +.|.+||+.+++....  +......    ..+.+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence            33      2347899999999999988865            8999999988653221  1111111    257889999


Q ss_pred             cCCcEEEEEeCCeEEEEEcCCceeeeccccCC------------------------------------------------
Q 001224          968 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------  999 (1120)
Q Consensus       968 pdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~------------------------------------------------  999 (1120)
                      |||+ ++++ ++.|.+||+.+++.+..+....                                                
T Consensus       157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            9999 5543 4459999999988766544221                                                


Q ss_pred             ------------------CCCCeeEEEECC-CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE
Q 001224         1000 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1060 (1120)
Q Consensus      1000 ------------------h~~~v~~l~~s~-dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~ 1060 (1120)
                                        +...+.+++|+| ||++|+++  ++.|++||+.+++.+..+.    ...     .+.  .++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~-----~~~--~~~  301 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDH-----TYY--CVA  301 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSS-----CCC--EEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCC-----Ccc--ceE
Confidence                              011456778889 99999988  8899999999999887765    111     133  799


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1061 AHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      |+| |+++|++++.++.|.+||+.+++
T Consensus       302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          302 FDK-KGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             ECS-SSSCEEEESBSSEEEEEETTTTE
T ss_pred             ECC-CCCEEEEecCCCeEEEEeccccc
Confidence            999 57888888899999999999887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=2.5e-18  Score=207.51  Aligned_cols=234  Identities=10%  Similarity=0.041  Sum_probs=167.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEeC-CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCe
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL  440 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~  440 (1120)
                      +..+|++++|+|||++ ||.++. ||++.||++.+++...                    +..|. ..|..++|||| ++
T Consensus        20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~   77 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV   77 (582)
T ss_dssp             HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred             hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence            3567999999999997 555554 9999999997665443                    33444 68999999999 77


Q ss_pred             EEEEEC---CCeEEEEEccC--CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          441 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       441 las~~~---dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      +++++.   +....||.+..  .....   .+..+ ..+...+|+|||+.+++++++.++. .+||+.+++.......+.
T Consensus        78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~  152 (582)
T 3o4h_A           78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG  152 (582)
T ss_dssp             EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS
T ss_pred             EEEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC
Confidence            777775   45566766543  22121   23222 2344678999998756666666555 499999988765554333


Q ss_pred             cCeEEEeeccCCCceEEEEEecC----CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          516 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                         .+++|+  +||++|++++.+    +.|++||+.+++.. .+..+...+..++|+|||+                   
T Consensus       153 ---~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-------------------  207 (582)
T 3o4h_A          153 ---FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-------------------  207 (582)
T ss_dssp             ---CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred             ---ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence               566665  566899988776    78999998875543 4555555556666666654                   


Q ss_pred             CCEEEEEeCCC--eEEEEECCCCceeEEEecCCCCCCcCeEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001224          592 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       592 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                        .|+++..++  .|++||+.+++.. .+..+  ...+..++        |+|||.++++++.++.+++|++
T Consensus       208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence              677777888  8999999998877 54433  33566677        9999999999999999999987

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=4.4e-17  Score=183.71  Aligned_cols=275  Identities=11%  Similarity=0.106  Sum_probs=180.9

Q ss_pred             cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC----ceEEEeeecccccCCCCccccccC
Q 001224          727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA  802 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~  802 (1120)
                      +.++.|.+|.++.....  ...+..  . +...+..++|+|+|+.|++++.+    +.+.+|++..              
T Consensus        24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~--------------   84 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK--------------   84 (361)
T ss_dssp             SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET--------------
T ss_pred             CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC--------------
Confidence            34578999988643221  111110  1 34566779999999999888875    7999998743              


Q ss_pred             ceeecCCCCCcccc-cCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeee------cC--------CC
Q 001224          803 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP  865 (1120)
Q Consensus       803 ~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~  865 (1120)
                            .+|.+... ...  .+......+++  +++++++++  ++.|.+|++.....+..+      .+        +.
T Consensus        85 ------~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~  154 (361)
T 3scy_A           85 ------EKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM  154 (361)
T ss_dssp             ------TTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred             ------CCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence                  12221110 000  13345666777  888888876  689999999754332221      11        12


Q ss_pred             CCeEEEEEecCCCcEEEEE-eCCCcEEEEEeecce-------ee------EeecccccceEEEEEccCCCEEEEEe-CCC
Q 001224          866 PAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS  930 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg  930 (1120)
                      ..+.+++|+| ++++|+++ ..++.|++|++....       +.      .....+...+.+++|+|||++|++++ .++
T Consensus       155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            3468899999 88755554 458899999987543       11      11223445678999999999887776 689


Q ss_pred             CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e--CCeEEEEEcC--Cce--eeeccccCCCCCC
Q 001224          931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP 1003 (1120)
Q Consensus       931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~--d~~v~i~d~~--~~~--~~~~~~~~~h~~~ 1003 (1120)
                      .|.+|++.+++......+.....+.   ..+..++|+|||++|+++ .  ++.|.+|++.  +++  .+..+.  . ...
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~  307 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH  307 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred             eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence            9999999876443222232222221   245799999999998774 3  4789999996  444  333332  2 457


Q ss_pred             eeEEEECCCCcEEEEEE-cCCcEEEEEc--CCcceee
Q 001224         1004 ITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1037 (1120)
Q Consensus      1004 v~~l~~s~dg~~l~s~~-~Dg~v~iwd~--~~~~~~~ 1037 (1120)
                      +.+++|+|||++|++++ .++.|.+|++  .++++..
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            88999999999999888 5689999654  5777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=4.8e-17  Score=183.43  Aligned_cols=243  Identities=14%  Similarity=0.145  Sum_probs=165.0

Q ss_pred             CCCCccEEEEccCCCEEEEEe-C----CcEEEEEcCC--Cce--eeeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEE
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQI  892 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-d----g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~v  892 (1120)
                      +...+..++|+|||++|++++ +    +.|.+|++..  ++.  +.....+......+++   ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            355677899999999999887 4    6899998865  432  3334445556777777   455555544 6889999


Q ss_pred             EEeecceeeEee------cc--------cccceEEEEEccCCCEEEEEe-CCCCEEEEECCCccc------ccc----ee
Q 001224          893 YNVRVDEVKSKL------KG--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF  947 (1120)
Q Consensus       893 wd~~~~~~~~~l------~~--------h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~------~~~----~~  947 (1120)
                      |++.....+..+      .+        +...+.+++|+|||++|++++ .++.|.+|+++....      ...    ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            999754332221      11        223457899999999776554 588999999886442      111    11


Q ss_pred             eeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceee--eccc-cCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224          948 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus       948 ~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
                      .....+     ..+..++|+|||++++++  .++.|.+|++.+++..  ..+. ...+...+..++|+|||++|+++..+
T Consensus       205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            122222     246899999999988774  4789999999877542  2221 12334567899999999999777665


Q ss_pred             --CcEEEEEcC--Ccce--eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe-CCCcEEEEecCC
Q 001224         1023 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1085 (1120)
Q Consensus      1023 --g~v~iwd~~--~~~~--~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~-~Dg~v~vW~~~~ 1085 (1120)
                        +.|.+|++.  ++++  +..+.      .+     ..+..++|+| |+++|++++ .++.|.+|++..
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEEC
Confidence              899999996  4553  33332      11     2334899999 688887777 679999976653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.6e-18  Score=207.35  Aligned_cols=270  Identities=10%  Similarity=0.055  Sum_probs=184.6

Q ss_pred             ccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEeeccc-cCeEEEeeccCCCceEEEEEec---CCeEEEEe
Q 001224          471 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAWL  545 (1120)
Q Consensus       471 ~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd  545 (1120)
                      ..+|++++|+|||+  .|++++. ||+++||++.+++. ..+..|. ..+.+++|++  + +++++++.   +...++|.
T Consensus        21 ~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence            56899999999999  5777776 99999999866655 4455454 6788888864  4 67777765   45566766


Q ss_pred             cCC--CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          546 YDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       546 ~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      ++.  .+....+... ..+...+|+|+|+                    ..+++.+.++.+.+||+.+++.......+. 
T Consensus        95 ~~~~~~g~~~~l~~~-~~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           95 VNTSRPGEEQRLEAV-KPMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EETTSTTCCEECTTS-CSBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred             EeccCCCccccccCC-CCceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence            554  3332222221 1222345555554                    223444444555699999987666554321 


Q ss_pred             CCCcCeEEEcCCCCEEEEEECC----CcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001224          624 LPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  699 (1120)
Q Consensus       624 ~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1120)
                          .+++|+|||++|++++.+    +.|++||+.++. .. .+                                    
T Consensus       153 ----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l------------------------------------  190 (582)
T 3o4h_A          153 ----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VF------------------------------------  190 (582)
T ss_dssp             ----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EE------------------------------------
T ss_pred             ----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Ee------------------------------------
Confidence                789999999999988766    567777665441 00 00                                    


Q ss_pred             ccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCc
Q 001224          700 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  779 (1120)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  779 (1120)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (582)
T 3o4h_A          191 --------------------------------------------------------------------------------  190 (582)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CC--cEEEEEcCCCc
Q 001224          780 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFK  856 (1120)
Q Consensus       780 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg--~i~vwd~~~~~  856 (1120)
                                                             .  .+...+..++|||||++|+++. ++  .|++||+.+++
T Consensus       191 ---------------------------------------~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          191 ---------------------------------------D--SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             ---------------------------------------C--CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             ---------------------------------------e--cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence                                                   0  0334456677777777777555 56  78888888877


Q ss_pred             eeeeecCCCCCeEEEE--------EecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeC
Q 001224          857 TMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA  928 (1120)
Q Consensus       857 ~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~  928 (1120)
                      .. .+..|...+..++        |+| |+.++++++.||.+++|++  ++...   .+.+.|.+++|+ |++++++++.
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          230 VE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             EE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcC
Confidence            76 6666766666667        999 7799999999999999999  66554   344678999999 9999998888


Q ss_pred             CCC---EEEEECCC
Q 001224          929 DSQ---LCVWSSDG  939 (1120)
Q Consensus       929 Dg~---v~iWd~~~  939 (1120)
                      +.+   +.+|+..+
T Consensus       302 ~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          302 LSTPPRIVSLPSGE  315 (582)
T ss_dssp             TTEEEEEEEETTCC
T ss_pred             CCCCCeEEEEcCCC
Confidence            754   55666543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=1.2e-17  Score=188.35  Aligned_cols=251  Identities=11%  Similarity=0.100  Sum_probs=170.2

Q ss_pred             CCCccEEEEccCCCEEEEEeCCcEEEEEcC-CCceeeeecC-CCCCeEEEEEecCCCcE--EEEEe-------------C
Q 001224          824 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNNI--IAIGM-------------D  886 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~  886 (1120)
                      ...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| |+++  ++++.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence            346789999999999998884499999997 7765443221 112366789999 8884  55553             6


Q ss_pred             CCcEEEEEee-cceeeEeec----ccccceEEEEEccCCCEEEEEeC-CCCEEEEECC-CcccccceeeeccCCCCCCCC
Q 001224          887 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ  959 (1120)
Q Consensus       887 dg~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~  959 (1120)
                      +|.+.+|++. .++....+.    .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +.   .
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~  193 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence            8999999997 466544443    25567999999999998887654 6789999998 55432111121111 11   2


Q ss_pred             CCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cceee------ecccc--CCCCC------CeeEEE-ECCCCcEEEEEE
Q 001224          960 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACF 1020 (1120)
Q Consensus       960 ~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~dg~~l~s~~ 1020 (1120)
                      .+..++|+|||++++++  .++.|.+|++.  +++..      ..+..  .+|..      .+..++ |+|||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            56899999999998885  36799999875  45542      11211  12222      588999 999999988776


Q ss_pred             cCC------cEEEEEcC-CcceeeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001224         1021 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1086 (1120)
Q Consensus      1021 ~Dg------~v~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1086 (1120)
                      .+.      .|.+|++. ++++.....   ..+ .+ .....  .++|+|.  |+++|++++.+ +.|.+|++...
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            433      89999996 676543211   000 00 11122  6889995  58899888765 89999999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=9.8e-17  Score=198.89  Aligned_cols=334  Identities=10%  Similarity=0.024  Sum_probs=208.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC-CCc--CeEEEcCCCCEEEEEECC---------CcEEEEE
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKILA  652 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~iwd  652 (1120)
                      .+.|+|++.+++++  ||.|++||+.+++....+..+... ..+  ..++|||||++|+.++.+         +.+.+||
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            45666666667775  999999999999988777755421 112  347899999999998875         3445666


Q ss_pred             ccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcc
Q 001224          653 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  732 (1120)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  732 (1120)
                      +.++. ..                                                                        
T Consensus        99 ~~~~~-~~------------------------------------------------------------------------  105 (740)
T 4a5s_A           99 LNKRQ-LI------------------------------------------------------------------------  105 (740)
T ss_dssp             TTTTE-EC------------------------------------------------------------------------
T ss_pred             CCCCc-EE------------------------------------------------------------------------
Confidence            65551 10                                                                        


Q ss_pred             eeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCC
Q 001224          733 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  812 (1120)
Q Consensus       733 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~  812 (1120)
                                     .+    ..+...+...+|||||+.|+.+ .++.|++|++.++....           + . ..|.
T Consensus       106 ---------------~l----~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~-----------l-t-~~g~  152 (740)
T 4a5s_A          106 ---------------TE----ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR-----------I-T-WTGK  152 (740)
T ss_dssp             ---------------CS----SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE-----------C-C-SCCB
T ss_pred             ---------------Ec----ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE-----------E-c-CCCC
Confidence                           00    1134567889999999998877 46788888864321100           0 0 0000


Q ss_pred             cccccCCCCCCC---------CCccEEEEccCCCEEEEEe-C-C-----------------------------------c
Q 001224          813 MMTNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-G-G-----------------------------------K  846 (1120)
Q Consensus       813 ~~~~~~~~~~~~---------~~v~~l~~s~d~~~l~~~s-d-g-----------------------------------~  846 (1120)
                      ... .+.  ++.         ....+++|||||++||.++ | +                                   +
T Consensus       153 ~~~-~~~--g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          153 EDI-IYN--GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             TTT-EEE--SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             ccc-eec--CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence            000 000  011         2234689999999999875 2 2                                   4


Q ss_pred             EEEEEcCC---Cc--eeeeec------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEeecce----ee--Eee-
Q 001224          847 ISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK--SKL-  904 (1120)
Q Consensus       847 i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~--~~l-  904 (1120)
                      |++||+.+   ++  ....+.      +|...+..++|+| |+++++....    +..|++||+.+++    +.  ..+ 
T Consensus       230 l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~  308 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI  308 (740)
T ss_dssp             EEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred             EEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence            78899888   63  223333      3677799999999 8887665543    3379999999987    32  222 


Q ss_pred             -cccccceE-----EEEEccCCCEEE-EEeC-CC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          905 -KGHSKRIT-----GLAFSHALNVLV-SSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       905 -~~h~~~V~-----~l~~s~d~~~l~-s~s~-Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                       .+|...|.     .++|+|||+.|+ ..+. +|  .|.+||+.+++.     .+...+.    ..+..+. .+|++.|+
T Consensus       309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~  378 (740)
T 4a5s_A          309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLY  378 (740)
T ss_dssp             EECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEE
T ss_pred             eccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEE
Confidence             45665554     789999999887 6653 33  588888887543     2222332    2344443 35577666


Q ss_pred             E-EeC-----C--eEEEEEcCCceeeecccc--CCCCCCeeEEEECCCCcEEEEEEcC---CcEEEEEcCCcceeeeeC
Q 001224          975 V-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       975 ~-~~d-----~--~v~i~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~iwd~~~~~~~~~~~ 1040 (1120)
                      . +..     +  .|...++..+.....+..  .+....+..+.|||||++++.....   ..+.+++..+++.+..+.
T Consensus       379 f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          379 YISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             EEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            6 432     2  455555555443322321  1234678899999999987765543   468889988887665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=3.4e-17  Score=183.73  Aligned_cols=260  Identities=12%  Similarity=0.080  Sum_probs=180.4

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE-EECC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYSR  447 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las-~~~d  447 (1120)
                      .++++++++ ++++++.+++|.+||+.+++.+....                  .+....+..++|+|||+++++ +..+
T Consensus         4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETTT
T ss_pred             cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCCC
Confidence            456777777 68999999999999999988765311                  112225788999999997655 4568


Q ss_pred             CeEEEEEccCCceeeeeeeeccc-----ccCeEEEEEcCCCCceEEEEecCC------------CcEEEEECCCCce---
Q 001224          448 HIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK---  507 (1120)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~s~d------------~~i~vwd~~~~~~---  507 (1120)
                      +.|.+||+.+++.+... .+ ++     ...+.+++|+|||+  ++++++.+            +.|.+||+.+++.   
T Consensus        65 ~~i~~~d~~t~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  140 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHA-NL-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  140 (349)
T ss_dssp             TEEEEEETTTTEEEEEE-ES-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             CcEEEEeCCCCcEEEEE-Ec-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccce
Confidence            99999999998765422 11 22     23488999999999  56666644            8999999988543   


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCC---------------------C---cee
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WCT  563 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~v~  563 (1120)
                      +..+.. ...+.+++|++  +|+ ++.++  +.|.+||+.+.+....+....                     .   ...
T Consensus       141 ~~~~~~-~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (349)
T 1jmx_B          141 VRTFPM-PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  214 (349)
T ss_dssp             SEEEEC-CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eeeccC-CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeee
Confidence            344443 34577777754  556 55554  449999998876655544321                     0   233


Q ss_pred             EEEEcCCCCeE---------E---e-----------cccccceeEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224          564 TMAYSADGTRT---------Y---Q-----------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       564 ~~~~s~~g~~~---------~---~-----------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      .+++++++...         +   .           .........++++| ++++++++  ++.|.+||+.+++.+..+.
T Consensus       215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  292 (349)
T 1jmx_B          215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN  292 (349)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence            45555544210         0   0           00122456778899 99998888  8899999999999888876


Q ss_pred             cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          620 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       620 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                      ...   .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus       293 ~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~  332 (349)
T 1jmx_B          293 LDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI  332 (349)
T ss_dssp             CSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred             CCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence            433   3678999999999988888999999999887 444433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=4.7e-16  Score=174.07  Aligned_cols=222  Identities=13%  Similarity=0.087  Sum_probs=156.6

Q ss_pred             CCccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ce
Q 001224          825 EAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~  899 (1120)
                      .....++++|||++++++.   +++|.+||+.+++.+.. +.. . ....+.+.|++...+++.+.||.+.+|+... ++
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            3466789999999998875   47899999999988877 552 2 2233667784557788889999999999865 55


Q ss_pred             eeE------eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC------CCCCCCCCCcEEEEc
Q 001224          900 VKS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFH  967 (1120)
Q Consensus       900 ~~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~fs  967 (1120)
                      ...      .+..+..++ .+.+++++..++..+.++.|.++|+...............      +..+  .....++|+
T Consensus       186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~  262 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLH  262 (361)
T ss_dssp             EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEE
T ss_pred             EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEe
Confidence            441      222233332 3455788888888888999999999764322111111100      0000  123458999


Q ss_pred             cCCcEEEEE-e-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc--
Q 001224          968 QDQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-- 1033 (1120)
Q Consensus       968 pdg~~la~~-~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~-- 1033 (1120)
                      ||++.+.++ .           ...|.+||+.+++.+..+..  +.  +.+++|+|||++|++++. +.|.|||..++  
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l  337 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP  337 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence            998888774 3           24899999999999998874  33  999999999999998886 99999999999  


Q ss_pred             ceeeeeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001224         1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1067 (1120)
Q Consensus      1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~ 1067 (1120)
                      +.+..+.     +.|     -.|..++++| ||.
T Consensus       338 ~~~~~i~-----~~G-----~~P~~~~~~p-~G~  360 (361)
T 2oiz_A          338 KLLRTIE-----GAA-----EASLQVQFHP-VGG  360 (361)
T ss_dssp             EEEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred             eeeEEec-----cCC-----CCcEEEEecC-CCC
Confidence            8887764     112     3355789999 453

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=2.1e-16  Score=178.14  Aligned_cols=251  Identities=11%  Similarity=0.026  Sum_probs=169.4

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc-cCCCCCCCCCccEEEEccCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKND  836 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~d~  836 (1120)
                      ..+..++|+|+|+++++++.+ .+.+|++..                     +|.+... ....  + ..+.+++++|||
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg   94 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNT   94 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCC
Confidence            457789999999988888877 899998741                     1111100 0000  1 125568899999


Q ss_pred             CE--EEEE--------------eCCcEEEEEcC-CCceeeeec----CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001224          837 SY--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN  894 (1120)
Q Consensus       837 ~~--l~~~--------------sdg~i~vwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd  894 (1120)
                      ++  ++++              .++.+.+|++. +++....+.    .+...+.+++|+| |+++|++++. ++.|++|+
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~  173 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEE
Confidence            94  4444              46889999997 465544333    2456799999999 8888877653 67999999


Q ss_pred             ee-cceee--Eeec--ccccceEEEEEccCCCEEEEEeC-CCCEEEEECCC--ccccc-ceeeeccCCCCCCCC------
Q 001224          895 VR-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK-NRFLQIPTGRTPTAQ------  959 (1120)
Q Consensus       895 ~~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~--~~~~~-~~~~~~~~~~~~~~~------  959 (1120)
                      +. +++..  ..+.  .|...+..++|+|||++|++++. ++.|.+|+++.  ++... ...+...........      
T Consensus       174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  253 (365)
T 1jof_A          174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccc
Confidence            98 67643  3333  24567899999999999987765 68999998763  33211 111222221110001      


Q ss_pred             -CCcEEE-EccCCcEEEEE--eCC-----eEEEEEcC-Cceeeeccc-cCCCCCCeeEEEECC---CCcEEEEEEcC-Cc
Q 001224          960 -SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-AT 1024 (1120)
Q Consensus       960 -~i~~~~-fspdg~~la~~--~d~-----~v~i~d~~-~~~~~~~~~-~~~h~~~v~~l~~s~---dg~~l~s~~~D-g~ 1024 (1120)
                       .+..++ |+|||++|+++  .++     .|.+|++. +++...... ...+...+..++|+|   ||++|++++.+ +.
T Consensus       254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence             367899 99999998774  333     89999996 565443211 113345677899999   89999999875 89


Q ss_pred             EEEEEcCCcc
Q 001224         1025 VCVFSAANLK 1034 (1120)
Q Consensus      1025 v~iwd~~~~~ 1034 (1120)
                      |.||+++...
T Consensus       334 v~v~~~~~~~  343 (365)
T 1jof_A          334 LEIYRWKDEF  343 (365)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEchhh
Confidence            9999998763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=2.2e-15  Score=168.68  Aligned_cols=228  Identities=9%  Similarity=0.012  Sum_probs=139.5

Q ss_pred             CCCeEEEEE-----eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE----
Q 001224          375 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----  445 (1120)
Q Consensus       375 dg~~lla~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~----  445 (1120)
                      ++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|+++.    
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~   72 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE   72 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence            455444443     2378999999999987653                   2233444  899999999999986    


Q ss_pred             ------CCCeEEEEEccCCceeeeeeeecc---cccCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEE-eec
Q 001224          446 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG  513 (1120)
Q Consensus       446 ------~dg~v~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~-~~~  513 (1120)
                            .++.|.+||..+++.+..+....+   +......++|+|||++  |+++.  .+++|.+||+.+++.+.. +..
T Consensus        73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~  150 (361)
T 2oiz_A           73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA  150 (361)
T ss_dssp             TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence                  367899999998887654332211   2245778999999995  44443  468999999999998887 653


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      . + ...+.+.+... ..+++.+.||.+.+|+........... +.    ...+.+...         . ..+..++++.
T Consensus       151 ~-~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~----~~~~~~~~~---------~-~~~~~~~~g~  212 (361)
T 2oiz_A          151 A-G-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQS-RS----KQMFSVKDD---------P-IFIAPALDKD  212 (361)
T ss_dssp             T-T-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEE-EC----CCCSCTTTS---------C-BCSCCEECSS
T ss_pred             C-C-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeec-cc----cceEcCCCC---------c-eEEEecccCC
Confidence            2 2 22234444432 577888899999999886533322100 00    001111111         0 1112234455


Q ss_pred             EEEEEeCCCeEEEEECCCCce--eEEEecCC--------CCCCcCeEEEcCCCCEEEEEE
Q 001224          594 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                      .++..+.++.|.++|+..+..  ...+....        .......++|+|+++.++++.
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~  272 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM  272 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence            677777889999999875542  22222110        001122378888877776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=4.4e-16  Score=177.57  Aligned_cols=251  Identities=13%  Similarity=0.016  Sum_probs=159.4

Q ss_pred             eeeccCCCCceE-----EEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          358 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       358 ~~~~~h~~~v~~-----v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      ..+-.|......     .+|||||++|++++..+|  .|.+||+.+++...                   +..+|...+.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~   84 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF   84 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence            333345544544     889999997555554477  48888998887654                   3455666666


Q ss_pred             EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEE--EcCCCCceEEEE------------------
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------  490 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------  490 (1120)
                      .++|||||++|+.++.++.|++||+.+++...   .+..+...+....  ++++++  +++.                  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence            78899999999999999999999999987543   2334444454444  489998  3442                  


Q ss_pred             ----ecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCCC-
Q 001224          491 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG-  559 (1120)
Q Consensus       491 ----~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-  559 (1120)
                          .+.+..|.+||+.+++.. .+..+...+..+.|+|. +|..|+....+      ..|.++|....... .+..+. 
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAE  236 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCT
T ss_pred             hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCC
Confidence                234578999999998754 44456677888888651 55777776653      36777776654332 222222 


Q ss_pred             -CceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CC----CeEEEEECCCCceeEEEecCC--CC-CCcCeE
Q 001224          560 -RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD----FSIKFWDMDSVQLLTSIDADG--GL-PASPRI  630 (1120)
Q Consensus       560 -~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~  630 (1120)
                       ..+....|+|||+                     .|+..+ .+    +.|++||+.+++.........  +. .....+
T Consensus       237 ~~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~  295 (388)
T 3pe7_A          237 GESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS  295 (388)
T ss_dssp             TEEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred             CcccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence             1344555555554                     454433 22    249999999987543322221  00 012335


Q ss_pred             EEcCCCCEEEEE---------ECCCcEEEEEccCc
Q 001224          631 RFNKDGCLLAVS---------TNDNGIKILATSDG  656 (1120)
Q Consensus       631 ~~s~~~~~l~~~---------~~dg~i~iwd~~~~  656 (1120)
                      +|+|||+.|+..         ..+..|++||+.++
T Consensus       296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             EEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             eEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            899999988754         34568888988765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=6.5e-16  Score=176.13  Aligned_cols=207  Identities=10%  Similarity=0.034  Sum_probs=138.7

Q ss_pred             ccCCCCceEE-----EEEcCCCCeEEEEEC-CC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC
Q 001224          422 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  493 (1120)
Q Consensus       422 l~~h~~~V~~-----l~~spdg~~las~~~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~  493 (1120)
                      +..|...+..     .+|||||++|+.++. ++  .|.+||+.+++...   ...+|...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5556655555     899999999999987 66  48888999887554   3345655666788999999  6888888


Q ss_pred             CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe----------------------cCCeEEEEecCCCCC
Q 001224          494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------------------LDGKIKAWLYDNLGS  551 (1120)
Q Consensus       494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~  551 (1120)
                      ++.|++||+.+++....+..+...+....|..++++.+++...                      .+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            8999999999998877777666666555554467777776432                      346788898887543


Q ss_pred             ceeeeCCCCceeEEEEcC-CCCeEEecccccceeEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeEEEecCCCC
Q 001224          552 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL  624 (1120)
Q Consensus       552 ~~~~~~~~~~v~~~~~s~-~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~  624 (1120)
                       ..+..+...+..+.|+| ||                     +.|+.+..      ...|.++|..++.. ..+..+...
T Consensus       181 -~~l~~~~~~~~~~~~sp~dg---------------------~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~  237 (388)
T 3pe7_A          181 -TVILQENQWLGHPIYRPYDD---------------------STVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG  237 (388)
T ss_dssp             -EEEEEESSCEEEEEEETTEE---------------------EEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred             -EEeecCCccccccEECCCCC---------------------CEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence             22223333344555555 44                     45665554      33788888876544 333322211


Q ss_pred             CCcCeEEEcCCCCEEEEEEC-CC----cEEEEEccCc
Q 001224          625 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG  656 (1120)
Q Consensus       625 ~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~  656 (1120)
                      ..+..++|+|||+.|+..+. ++    .|++||+.++
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            24667899999997765443 22    2777777655

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=6.7e-15  Score=162.89  Aligned_cols=251  Identities=14%  Similarity=0.073  Sum_probs=184.6

Q ss_pred             CCCccEEEEccCCCEEEEEe-C------------------------CcEEEEEcCCCceeeeec-CCCCCeEEEEEecCC
Q 001224          824 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD  877 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d  877 (1120)
                      -..+.+++++++|+++++.. +                        ++|.+||..+++.+..+. .+......++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            45689999999999998877 4                        379999999888876664 3445789999999 8


Q ss_pred             CcEEEEEeCCCcEEEEEeecce-eeEee---------cccccceEEEEEcc-CCCEEEEEe-CCCCEEEEECCCcccccc
Q 001224          878 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN  945 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~v~iWd~~~~~~~~~  945 (1120)
                      ++++++...++.|++|+..... .+..+         .++.....+|+++| ++.++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8888888889999999975432 45555         34556789999999 788888886 689999999543 22111


Q ss_pred             eeeeccCCC---CCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEE--
Q 001224          946 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1018 (1120)
Q Consensus       946 ~~~~~~~~~---~~~~~~i~~~~fspd-g~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-- 1018 (1120)
                       ......+.   .........++++|+ |.++++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++  
T Consensus       181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence             00000000   001124689999999 6666664 77899999999899988887666778899999999 433333  


Q ss_pred             -----EEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1019 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1019 -----~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                           ...+..|++||..+++.+..+...    .+   ..-.|..++++| |++++++...++.|++|++...
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence                 334458999999999999876411    11   112355899999 5788999999999999998754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.7e-14  Score=159.57  Aligned_cols=250  Identities=12%  Similarity=0.119  Sum_probs=183.2

Q ss_pred             CCceEEEEecCCCeEEEEEeCC------------------------CcEEEEecCCCceeEeeceeeeccCCCCcccccc
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAA  420 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (1120)
                      +.|.+|+++|+|+ ++++...+                        ++|.+||..+++.+..                  
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------   84 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------   84 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence            6799999999998 57777766                        4799999988886542                  


Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc-eeeeeeee---------cccccCeEEEEEcC-CCCceEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCVI  489 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l~  489 (1120)
                      ...++-.....++++|+|+++++...++.|++|+..+.. .+.   .+         .++......|+|+| ++.  +++
T Consensus        85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence            122455678999999999998888889999999987652 222   23         34455789999999 676  677


Q ss_pred             Eec-CCCcEEEEECCCCceeEEeecc----------ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee--
Q 001224          490 TCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--  556 (1120)
Q Consensus       490 s~s-~d~~i~vwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  556 (1120)
                      +.+ .++.|++|| .+|..+..+...          ......+++.++ .+.++++...++.|++|+..+++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            776 689999999 778887777432          234788888643 25788888889999999998666555543  


Q ss_pred             CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-CCCCCCcCeEEEcCC
Q 001224          557 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKD  635 (1120)
Q Consensus       557 ~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~  635 (1120)
                      .....+..++++| +.              .+..+++.+++...+..|++||..+++.+..+.. ..+...+..++++|+
T Consensus       238 ~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             TTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             ccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            2344566666666 32              1112333344445667999999999998888742 223446789999999


Q ss_pred             CCEEEEEECCCcEEEEEccC
Q 001224          636 GCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       636 ~~~l~~~~~dg~i~iwd~~~  655 (1120)
                      |.++++...++.|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98888888899999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.66  E-value=5.6e-14  Score=152.32  Aligned_cols=243  Identities=11%  Similarity=0.117  Sum_probs=176.6

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN  894 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd  894 (1120)
                      +-..+.+++++++++++++.. ++.|.+||.. ++.+..+.      ++...+..+++++.+++++++... ++.|++||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            456688999999999888776 7899999987 56655553      234568999995327777776643 88999999


Q ss_pred             eecceeeEeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224          895 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       895 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l  973 (1120)
                       .+++.+..+. .+...+.+++++++|+++++...++.|.+|+.+.. ..  ..+.. .++   ...+..++++++|+++
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~--~~~~~-~~~---~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL--HKFGC-SKH---LEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE--EEEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE--EEeCC-CCc---cCCcEEEEECCCCCEE
Confidence             5677666664 34567899999999998888888899999996542 11  11111 111   1256899999999977


Q ss_pred             EEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-cEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          974 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       974 a~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                      ++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+..    ..    
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~----  248 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV----  248 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence            774 68899999974 55555554334446789999999999888887776 9999995 5666665541    11    


Q ss_pred             CCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      ....+.+++++| +++++++ +.|+.|++|++...
T Consensus       249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence            112355899999 5776666 67999999997653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=2.5e-13  Score=159.38  Aligned_cols=332  Identities=12%  Similarity=0.119  Sum_probs=218.5

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--Ccchhhhhcccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA  670 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~  670 (1120)
                      ..+++...++.|.++|..+++.+..+....   .+..+.|+|||+++++++.++.|.+||+.  ++ +....+.      
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence            356777789999999999999998887432   35689999999999999999999999985  33 1111110      


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224          671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  750 (1120)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~  750 (1120)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (567)
T 1qks_A          238 --------------------------------------------------------------------------------  237 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccccEEEEEEc----CCCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC-C
Q 001224          751 LPENLRATKISRLIFT----NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E  824 (1120)
Q Consensus       751 ~~~~~~~~~i~~l~~s----~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~-~  824 (1120)
                           .......++|+    |||++++++.. ++.+.++|..+.+      .+....+.-.... +.        ..| .
T Consensus       238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i~~~~~~~~-~~--------~~~p~  297 (567)
T 1qks_A          238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQSTRGMTYD-EQ--------EYHPE  297 (567)
T ss_dssp             -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEEECCEECTT-TC--------CEESC
T ss_pred             -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEEeccccccc-cc--------cccCC
Confidence                 01234688999    69998887766 4888888753211      1110000000000 00        001 2


Q ss_pred             CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~  899 (1120)
                      ..+..+..++++..++...  +|+|.++|..+.+.+  ..+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence            2677888999877666554  699999998865432  2222 334567889999 788776655 57899999999998


Q ss_pred             eeEeecc-----cccceEEEEEccCCCE-EEEEe-CCCCEEEEECCCcccc--cceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          900 VKSKLKG-----HSKRITGLAFSHALNV-LVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       900 ~~~~l~~-----h~~~V~~l~~s~d~~~-l~s~s-~Dg~v~iWd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      ++..+.-     |.+.-..+ ++|++.. .+++. .+++|.++|.++.+..  ....++......   ..-..+.++|++
T Consensus       376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~  451 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS  451 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred             EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence            7766643     43222222 5787544 44543 4689999999873311  012223322211   123567899999


Q ss_pred             cEEEEEe--------CCeEEEEEcCCc---------eeeec--cc-cCCCCCCeeEEEECCCCcEEEEEE-----cCCcE
Q 001224          971 IHFLVVH--------ETQLAIFETTKL---------ECVKQ--WV-PRESSAPITHATFSCDSQLVYACF-----LDATV 1025 (1120)
Q Consensus       971 ~~la~~~--------d~~v~i~d~~~~---------~~~~~--~~-~~~h~~~v~~l~~s~dg~~l~s~~-----~Dg~v 1025 (1120)
                      +++.+..        .+.|.+||+.+.         +.+..  |. .......+..+.|++||+++..+.     .++.|
T Consensus       452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i  531 (567)
T 1qks_A          452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL  531 (567)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred             CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence            9999854        359999999877         22211  11 111246789999999999877663     37999


Q ss_pred             EEEEcCCcceeeeeC
Q 001224         1026 CVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1026 ~iwd~~~~~~~~~~~ 1040 (1120)
                      .|+|..+++++..++
T Consensus       532 ~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          532 VVVDDKTLELKHVIK  546 (567)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             EEEECCCceEEEEeC
Confidence            999999999998887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=6.4e-15  Score=168.38  Aligned_cols=162  Identities=9%  Similarity=0.010  Sum_probs=108.7

Q ss_pred             ceEEEEEcCCCCeEEEEECC---CeEEEEEccCCceeeeeeeecccccC-eEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          428 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      .+.+++|||||++|+.+...   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence            37888999999999887653   368888999887443    3333333 33488999999  68888888899999999


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      +++.......+..      |  .++|..|+..+.++...+|..                 ...++|+++           
T Consensus       111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~-----------  154 (396)
T 3c5m_A          111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS-----------  154 (396)
T ss_dssp             TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred             CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence            8887665554433      2  123456665555555555531                 223455554           


Q ss_pred             eEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001224          584 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  644 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  644 (1120)
                                .++.+     ..+..|++||+.+++.......   ...+..+.|+| +++.|+..+.
T Consensus       155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~  208 (396)
T 3c5m_A          155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE  208 (396)
T ss_dssp             ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC
T ss_pred             ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec
Confidence                      33332     3567899999998876655532   23477899999 7887776654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=6.5e-13  Score=155.88  Aligned_cols=333  Identities=14%  Similarity=0.088  Sum_probs=211.0

Q ss_pred             ceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecC--CCCCceeeeCCCCce
Q 001224          485 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWC  562 (1120)
Q Consensus       485 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v  562 (1120)
                      .+++++...++.|.++|..+++.+.++... ..+..+.++  ++|+++++++.|+.|.+||+.  +.+....+.. +...
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P  242 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA  242 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence            337888899999999999999999888743 345677764  567899999999999999995  4444433332 2233


Q ss_pred             eEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCC---------CCCcCeEEE
Q 001224          563 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPRIRF  632 (1120)
Q Consensus       563 ~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~  632 (1120)
                      ..+++++-.                 .|+|++++++. .++.|.++|..+.+.+..+...+.         ...+..+..
T Consensus       243 ~~ia~s~~~-----------------~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          243 RSIETSKME-----------------GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             EEEEECCST-----------------TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             ceeEEcccc-----------------CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence            444555100                 03445666654 579999999999998887763221         012344555


Q ss_pred             cCCCCEEEEE-ECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001224          633 NKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  711 (1120)
Q Consensus       633 s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1120)
                      ++++..++.. ..+|.|.++|..+..                                                      
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~------------------------------------------------------  331 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLN------------------------------------------------------  331 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSS------------------------------------------------------
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCc------------------------------------------------------
Confidence            5544333222 223444444432210                                                      


Q ss_pred             CcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccccc
Q 001224          712 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  791 (1120)
Q Consensus       712 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~  791 (1120)
                                                                                          .+.+..+     
T Consensus       332 --------------------------------------------------------------------~~~v~~i-----  338 (567)
T 1qks_A          332 --------------------------------------------------------------------NLKTTEI-----  338 (567)
T ss_dssp             --------------------------------------------------------------------EEEEEEE-----
T ss_pred             --------------------------------------------------------------------cceeeee-----
Confidence                                                                                0000000     


Q ss_pred             CCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecC-----C
Q 001224          792 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP-----P  864 (1120)
Q Consensus       792 ~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~  864 (1120)
                                       .             .......+.|+|+|++++++.  +++|.++|+.+++.+..+..     |
T Consensus       339 -----------------~-------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph  388 (567)
T 1qks_A          339 -----------------S-------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  388 (567)
T ss_dssp             -----------------E-------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             -----------------e-------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence                             0             112244678899999888776  68899999999887766543     3


Q ss_pred             CCCeEEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeEeecccccceEEEEEccCCCEEEEEeC-------C
Q 001224          865 PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-------D  929 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-------D  929 (1120)
                      .+.-..+ ++|+.+.+++++. .++.|.++|..+       .+.++++......-..+..+|++++|.....       .
T Consensus       389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~  467 (567)
T 1qks_A          389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS  467 (567)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred             Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence            3222222 5783355555553 468999999988       6778888765444355789999999887653       3


Q ss_pred             CCEEEEECCCccc---c-cceeeecc--CCCCCCCCCCcEEEEccCCcEEEEE-e-----CCeEEEEEcCCceeeeccc
Q 001224          930 SQLCVWSSDGWEK---Q-KNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       930 g~v~iWd~~~~~~---~-~~~~~~~~--~~~~~~~~~i~~~~fspdg~~la~~-~-----d~~v~i~d~~~~~~~~~~~  996 (1120)
                      .+|.|+|+.+.+.   . ....+...  .+.......+..+.|+|+|+++.++ .     ++.|.|+|..+++.+..+.
T Consensus       468 ~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          468 GSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             TCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            5899999987511   1 11222210  0111111367899999999988774 2     6899999999999887765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=5.2e-15  Score=169.13  Aligned_cols=239  Identities=13%  Similarity=-0.010  Sum_probs=152.8

Q ss_pred             CceEEEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      .+.+++|||||++|+++...++  .|.+||+.+++...                   +..++......+.|||||++|+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~   97 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY   97 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence            3788999999998666655444  68888998876543                   12222223344889999999999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEE-------------------EEEcCCCCceEEEEe-----cCCCcEEE
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV  499 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----s~d~~i~v  499 (1120)
                      ++.++.|.+||+.+++...   ....+......                   ++|+|+++.  ++.+     ..+..|.+
T Consensus        98 ~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred             EEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence            9999999999999887443   12223332222                   356888884  3333     45678999


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCC-CCceeEEEEcCCCC
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT  572 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~  572 (1120)
                      ||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..+.|+|+| 
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg-  249 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG-  249 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS-
T ss_pred             EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC-
Confidence            999988765544 46677888888652 34556655543      35778887654322211111 1134444555554 


Q ss_pred             eEEecccccceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEEC--
Q 001224          573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--  644 (1120)
Q Consensus       573 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~--  644 (1120)
                                          ++|+.++.+     +.|++||+.+++.........    .. +.|+| ||+++++++.  
T Consensus       250 --------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          250 --------------------SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             --------------------SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred             --------------------CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence                                456555433     459999999887654433221    22 89999 9998887652  


Q ss_pred             --------------CCcEEEEEccCc
Q 001224          645 --------------DNGIKILATSDG  656 (1120)
Q Consensus       645 --------------dg~i~iwd~~~~  656 (1120)
                                    ++.|++||+.++
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTT
T ss_pred             ceeeccccccccCCCCcEEEEecccC
Confidence                          356778877655

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2e-14  Score=176.49  Aligned_cols=335  Identities=9%  Similarity=0.017  Sum_probs=197.2

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEe--cCCCcEEEEECCCCceeEEeeccccCeE---------EEeeccCCCceE-EE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF  533 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~--s~d~~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~  533 (1120)
                      .+.+|...|..++|++++-  ++++.  +.++...||....+.....+..|...+.         ...|+.++||+. |+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            3667899999999997654  67777  6688999999766666777777766655         455553467777 66


Q ss_pred             EEec-CCeEEEEecC--CCCCceeeeC-----CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC----
Q 001224          534 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----  601 (1120)
Q Consensus       534 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  601 (1120)
                      ..+. +..|.+|++.  ..+....+..     +...+..                     ++|+|||+.|+.++.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~---------------------~~~spDg~~l~~~~~~~~~~  154 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWAD---------------------PVLLPERGEVWCMAEEFTGE  154 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEE---------------------EEEETTTTEEEEEEEEECSS
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccC---------------------cEECCCCCEEEEEEecccCC
Confidence            5543 4566666654  1033333332     2233444                     4455555577777765    


Q ss_pred             ------CeEEEEECCC------CceeEEEe-cCCCCCCcCeEEEcCCCCEEEEEECCC--------cEEEEEcc-Ccchh
Q 001224          602 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIRL  659 (1120)
Q Consensus       602 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~~  659 (1120)
                            ..|++||+.+      ++.. .+. .+  ...+..++|||||++|+.++.++        .|++||+. ++. .
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~  230 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-F  230 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-E
T ss_pred             CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-c
Confidence                  5899999988      5543 333 22  23577899999999999877553        57777765 230 0


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (662)
T 3azo_A          231 --------------------------------------------------------------------------------  230 (662)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                          .....+.   ..+...+..+.|+|||+.++++..++...||.++                    ..++..... ..
T Consensus       231 ----~~~~~l~---~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~~  282 (662)
T 3azo_A          231 ----ADTRTLL---GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-CR  282 (662)
T ss_dssp             ----EEEEEEE---EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-SC
T ss_pred             ----cccEEeC---CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-cc
Confidence                0000000   1134667889999999977777777755555432                    122221110 00


Q ss_pred             CC------CCCCCccEEEEccCCCEEEEEeCCcEEEE--EcCCCceeeeecCCCCCeEEE-EEecCCCcEEEEEeCCCc-
Q 001224          820 DS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDSS-  889 (1120)
Q Consensus       820 ~~------~~~~~v~~l~~s~d~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg~-  889 (1120)
                      ..      .-.-.+.+++|++++++++++..+.++||  |+.+++ +..+..+...+..+ +++. +.-++++++.+.. 
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~  360 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY  360 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence            00      00111457899999999888866777888  655554 67777777777777 5543 3334444555544 


Q ss_pred             -EEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          890 -IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       890 -v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                       |++||+.+++.......|...+....+++.....+.+..+..+..|-+
T Consensus       361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence             555555566654433445444444444433333444333345655543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=2.2e-13  Score=147.58  Aligned_cols=248  Identities=14%  Similarity=0.162  Sum_probs=172.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE-cCCCCeE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF  441 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~~l  441 (1120)
                      +-..+.+++++|+|+ ++++...++.|.+||.. ++.+.....     .        ....+|...+..+++ .++|+++
T Consensus        28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-----~--------~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-----C--------GKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-----B--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred             ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-----c--------CCCcccccCceEEEEEcCCCeEE
Confidence            456789999999998 68888889999999987 544432100     0        001245567899999 4777777


Q ss_pred             EEEEC-CCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee--ccccC
Q 001224          442 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP  517 (1120)
Q Consensus       442 as~~~-dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~h~~~  517 (1120)
                      ++... ++.|.+|| .+++.+.   .+. .+...+.+++++++|+  ++++...++.|.+||. +++.+..+.  ++...
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF  165 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred             EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence            76644 88999999 4555443   232 3446789999999998  6788788899999995 566666664  34556


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  597 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~  597 (1120)
                      +..+++++  +|.++++...++.|++||... +....+.....                   ......++++++|+.+++
T Consensus       166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~  223 (286)
T 1q7f_A          166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA  223 (286)
T ss_dssp             EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred             cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence            88888754  567777777899999999743 22222221110                   013345666666667777


Q ss_pred             EeCCC-eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          598 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       598 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus       224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            77775 9999995 5667777765444334678999999987766 67999999987543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.63  E-value=1.7e-10  Score=143.98  Aligned_cols=554  Identities=9%  Similarity=0.088  Sum_probs=312.4

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      ...|.++...++|.  |-.|+.+ -+..||..+++...- ...               .......|.++...++|.+.+.
T Consensus        87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~  147 (795)
T 4a2l_A           87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS  147 (795)
T ss_dssp             CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred             ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence            46799999999998  3345554 489999887653321 000               0000012889999888876664


Q ss_pred             EECCCeEEEEEccCCceeeeeeeeccc-ccC-eEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEE
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS  520 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~  520 (1120)
                      . . +.|..||..+++... .  ..++ ... |.++...+++.   +..++.++.|..||..+++..... ..+...|.+
T Consensus       148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~  219 (795)
T 4a2l_A          148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA  219 (795)
T ss_dssp             E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred             E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence            4 4 448899987765322 1  0111 123 88998888887   344555556889998777654321 123456777


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      +...  .++. |..++.++-+..||..+.... .+.....       .+.      ......+.++..+++|. |..|+.
T Consensus       220 i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~-------~~~------~l~~~~i~~i~~d~~g~-lWigt~  281 (795)
T 4a2l_A          220 ILQQ--SPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPS-------NPK------SISSNYIRSLAMDSQNR-LWIGTF  281 (795)
T ss_dssp             EEEE--ETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTT-------CTT------SCSCSBEEEEEECTTSC-EEEEES
T ss_pred             EEEc--CCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCC-------Ccc------ccCCCeEEEEEEcCCCC-EEEEeC
Confidence            7653  3444 444554445888887653221 1111000       000      00112344555555554 555555


Q ss_pred             CCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          601 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      + -|.+||..++.........     -....|.++...++|.+. +|+.++.|..|+..++ . +..+.....       
T Consensus       282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~~~~~-------  350 (795)
T 4a2l_A          282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRN-R-FKNIRNIPY-------  350 (795)
T ss_dssp             S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred             C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence            5 5889998877644332111     012458889899888755 5777778888875433 1 111100000       


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                  +...
T Consensus       351 ----------------------------------------------------------------------------~~~l  354 (795)
T 4a2l_A          351 ----------------------------------------------------------------------------KNSL  354 (795)
T ss_dssp             ----------------------------------------------------------------------------SSSC
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        0000


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....|.++...++|. |-.++.++-+..|+.....+            ..+....+..     ...-....|.+++..++
T Consensus       355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~~-----~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDES-----ARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCSCSCEEEEEEETT
T ss_pred             CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCCc-----ccCCCCccEEEEEEcCC
Confidence            235688888888887 55566665666665432111            0010000000     00002457889999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeec----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec-----
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-----  905 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-----  905 (1120)
                      |+.|.+|+ ++.|.+||..+++......    .....|.++...+ ++++.+ |+. +-|.+||..+++......     
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~  493 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT  493 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence            98455555 6789999988765433221    1245689999888 666555 444 458889987765433221     


Q ss_pred             -ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001224          906 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  984 (1120)
Q Consensus       906 -~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~  984 (1120)
                       -+...|.++...++|.+.+... + -|..|+..+++.   ...............|.++...++|.+.+.+.. .+..|
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~  567 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF  567 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred             ccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence             1236789999999888776554 4 488898876432   111000000011136788999999987666544 78899


Q ss_pred             EcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecC
Q 001224          985 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1063 (1120)
Q Consensus       985 d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p 1063 (1120)
                      |..+++....-...+ ....|.++...++|.+.+++  ++-|..|+..+++.. .+....-++.    .....-++...+
T Consensus       568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~  640 (795)
T 4a2l_A          568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS  640 (795)
T ss_dssp             ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred             CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence            988775543211112 14568999999999876655  455778898877644 3332222221    112122455555


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCC
Q 001224         1064 QEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1064 ~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                       +| .|..|+.+| +..+++..-
T Consensus       641 -~G-~l~~g~~~G-l~~~~p~~~  660 (795)
T 4a2l_A          641 -VG-QMYFGGING-ITTFRPELL  660 (795)
T ss_dssp             -TS-CEEEEETTE-EEEECGGGC
T ss_pred             -CC-eEEEecCCc-eEEEcHHHc
Confidence             45 455566566 566676543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.63  E-value=2.7e-14  Score=175.31  Aligned_cols=245  Identities=9%  Similarity=-0.025  Sum_probs=160.4

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEE--eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE-----
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-----  430 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-----  430 (1120)
                      ..+.+|...|..++|++++-+ ++.+  +.++...||....+.....                   +..|...|.     
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~   76 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred             HHHhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence            345568999999999988653 5555  4578999999644433321                   444555555     


Q ss_pred             ----EEEEc--CCCCe-EEEEEC-CCeEEEEEcc--C-Cceeeeeeeecc-----cccCeEEEEEcCCCCceEEEEecCC
Q 001224          431 ----RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD  494 (1120)
Q Consensus       431 ----~l~~s--pdg~~-las~~~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~s~d  494 (1120)
                          ..+|+  |||++ |+.++. +..|.+|++.  + +. .+   .+..     |...+.+++|+|||+  .|++++.|
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~  150 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE  150 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence                56665  99999 777654 4556666665  3 43 22   3444     677899999999999  57766665


Q ss_pred             ----------CcEEEEECCC------CceeEEee-ccccCeEEEeeccCCCceEEEEEecC--------CeEEEEecCC-
Q 001224          495 ----------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYDN-  548 (1120)
Q Consensus       495 ----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~-  548 (1120)
                                ..|++||+.+      ++. ..+. .+...+..++|+  +||++|+.++.+        ..|.+||+.. 
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence                      5899999987      554 4555 555667667774  567888877755        3799999873 


Q ss_pred             CC--Cceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeEEEecCCC
Q 001224          549 LG--SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       549 ~~--~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      +.  ....+ ..+..                     .+..+.|+|||+.+++++.++  .|++||+.+++.......+..
T Consensus       228 g~~~~~~~l~~~~~~---------------------~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          228 GRFADTRTLLGGPEE---------------------AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             SCEEEEEEEEEETTB---------------------CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CcccccEEeCCCCCc---------------------eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            31  11111 11222                     344555666666677777777  677777767765443332221


Q ss_pred             C------CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          624 L------PASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       624 ~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                      .      ..+.+++|+|++++++++.. +.+++|.+
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence            1      01467888899999888888 88888854

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.60  E-value=3.9e-10  Score=140.79  Aligned_cols=545  Identities=10%  Similarity=0.075  Sum_probs=314.7

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      ...|++|.-.++|-  |-.|+.+| +..||-.+   .     +.+.......      ..-....|.+|...++|.+.+ 
T Consensus        42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi-  103 (795)
T 4a2l_A           42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA---F-----TVYQHNEDDP------NSIANDISRIVKTDSQGRVWI-  103 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEETTE-EEEECSSC---E-----EEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred             cceeEEEEEcCCCC--EEEeecCc-CcccCCCc---e-----EEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence            46799999999997  44666666 56666432   1     1121100000      001235799999999987655 


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc-ccC-
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP-  517 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-~~~-  517 (1120)
                      |+.+| +..||..+++...    +....    ..|.++...++|.  +.+ ++. +.|.+||..+++......++ ... 
T Consensus       104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~  174 (795)
T 4a2l_A          104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT  174 (795)
T ss_dssp             EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred             EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence            44555 8999988765322    22111    1288999888887  344 333 45889998776543211111 123 


Q ss_pred             eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceee-eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          518 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      |.++...  .++. |..++.++.|..|+..+....... .....                     .+..+..++++. +.
T Consensus       175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw  229 (795)
T 4a2l_A          175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW  229 (795)
T ss_dssp             CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred             eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence            7777653  3444 444665556888887654322110 00112                     334444444443 55


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  671 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  671 (1120)
                      .++.++.|.+||..+++........     -....|.++...++|.+.+ |+.+ .|.+|+..++ .. ..+.....   
T Consensus       230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~-~~~~~~~~---  302 (795)
T 4a2l_A          230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SF-ASYSSNPV---  302 (795)
T ss_dssp             EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EE-EEECCCTT---
T ss_pred             EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eE-EEEecCCC---
Confidence            5665555899998876544332211     0124588888888887665 4454 6888886554 11 11100000   


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeecc
Q 001224          672 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  751 (1120)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  751 (1120)
                                                                                               ...    
T Consensus       303 -------------------------------------------------------------------------~~~----  305 (795)
T 4a2l_A          303 -------------------------------------------------------------------------ENG----  305 (795)
T ss_dssp             -------------------------------------------------------------------------STT----
T ss_pred             -------------------------------------------------------------------------CCC----
Confidence                                                                                     000    


Q ss_pred             CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEE
Q 001224          752 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  831 (1120)
Q Consensus       752 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~  831 (1120)
                        ......|.++...++|. +-.++.++-+..|+.....+            ..+.....   .    ..-....|.+++
T Consensus       306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~---~----~~l~~~~V~~i~  363 (795)
T 4a2l_A          306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRNIPY---K----NSLSDNVVSCIV  363 (795)
T ss_dssp             --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECCCTT---S----SSCSCSSEEEEE
T ss_pred             --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcCCCC---C----CCCCCCeeEEEE
Confidence              01335688899999888 55566666666666433211            11111100   0    001345689999


Q ss_pred             EccCCCEEEEEeCCcEEEEEcCCCceeeeecC--------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       832 ~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ..++|...+...++.|..|+..+++.......        ....|.+++..+ ++++|.+|+.++-|.+||..+++...-
T Consensus       364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            99988766644467899999887654332211        235689999988 777466678777899999887764332


Q ss_pred             ec----ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC-CCCCCCCCCcEEEEccCCcEEEEEeC
Q 001224          904 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE  978 (1120)
Q Consensus       904 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~fspdg~~la~~~d  978 (1120)
                      ..    .+...|.++...++|.+.+... +| +.+|+..+++....   .... ........|.++...++|.+.+.+. 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-  516 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTI---EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-  516 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEEC---CBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEc---cccccccccCCceEEEEEECCCCCEEEEeC-
Confidence            21    2346799999988888666544 44 88999877543211   1100 0001114678899999998777665 


Q ss_pred             CeEEEEEcCCceeeecccc-----CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224          979 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
                      +.+..||..+++. . +..     ......|.++...++|++.++. .. -+..||..+++... +.....++.    ..
T Consensus       517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~----~~  587 (795)
T 4a2l_A          517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPN----NV  587 (795)
T ss_dssp             SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSC----SC
T ss_pred             CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCch----hh
Confidence            7799999887765 2 210     1124579999999999876644 34 68889988775543 332222332    22


Q ss_pred             ccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +.  ++...+ +|++.+++  ++-|..|++.+++
T Consensus       588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred             eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence            44  677776 46555544  4557777776544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=2.4e-13  Score=152.12  Aligned_cols=221  Identities=11%  Similarity=0.091  Sum_probs=153.1

Q ss_pred             CCccEEEEccCCCEEEEEe-C---Cc--EEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC-----------
Q 001224          825 EAVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----------  887 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----------  887 (1120)
                      ..+..++|||||++|+..+ +   +.  |.+|++.+++.......+ . +..++|+| |++.|+.++.+           
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence            3467899999999999876 3   33  888898887765544433 3 99999999 88888877632           


Q ss_pred             ----------------CcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC-------CEEEEECCCccccc
Q 001224          888 ----------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQK  944 (1120)
Q Consensus       888 ----------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~v~iWd~~~~~~~~  944 (1120)
                                      ..|++||+.+++.+..+.. . .+..++|+||| ++++++.++       ...||.+++++.  
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~--  210 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE--  210 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE--
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce--
Confidence                            5799999988876455555 3 78899999999 777776552       446665553321  


Q ss_pred             ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC--------CeEEEEEcCCceeeeccccCCCCCCeeE-EEECCCCc
Q 001224          945 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQ 1014 (1120)
Q Consensus       945 ~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~ 1014 (1120)
                       ..+... +      .+..  ++|||++|+.. .+        ..|.+||  +++.....  .+|...+.. +.|+ || 
T Consensus       211 -~~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-  274 (347)
T 2gop_A          211 -EKMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-  274 (347)
T ss_dssp             -EEEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-
T ss_pred             -EEeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-
Confidence             111111 1      2333  39999988874 22        3688888  55544332  255678886 9999 98 


Q ss_pred             EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcE-EEEecC
Q 001224         1015 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1084 (1120)
Q Consensus      1015 ~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v-~vW~~~ 1084 (1120)
                      ++++++.++.++|| +.+++....+.       +  ...+.  .++|+|   .++++++.++.. .+|.+.
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             EEEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence            88999999999999 88766543332       1  11244  788887   577787777765 788876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.58  E-value=6.3e-13  Score=144.72  Aligned_cols=244  Identities=10%  Similarity=0.079  Sum_probs=167.1

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+..+.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.+++|+|+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~d   79 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQ   79 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTT
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCC
Confidence            3344566788999999999977899999999999999887  221                   3345678999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEE----ec-------------CCCcEEE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKV  499 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~s-------------~d~~i~v  499 (1120)
                      |+++++...++.|.+||..+++.........+. ...+..++++|+|+  ++++    |+             ..+.|..
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~  157 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFR  157 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEE
Confidence            998888777889999999887643211111111 23577899999998  6666    33             1235555


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCc----eeeeCCCCceeEEEEcCCCCeEE
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                      ++.. ++ +..+..+......++|++  +++.+++.+.++.|.+|++...+..    ..+....                
T Consensus       158 ~~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----------------  217 (296)
T 3e5z_A          158 LAPD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP----------------  217 (296)
T ss_dssp             ECTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS----------------
T ss_pred             ECCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC----------------
Confidence            5544 44 444555666778888854  5567777778899999998732222    1111111                


Q ss_pred             ecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEcc
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                           .....++++++|+.+++.  ++.|.+||.. ++.+..+..+..   +.+++| +|+++.|++++.++ +.-++..
T Consensus       218 -----~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          218 -----GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             -----SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             -----CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence                 123346667777655555  8899999986 777777765433   788999 68999999988763 4444544


Q ss_pred             Cc
Q 001224          655 DG  656 (1120)
Q Consensus       655 ~~  656 (1120)
                      +.
T Consensus       286 ~~  287 (296)
T 3e5z_A          286 VR  287 (296)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=7.1e-13  Score=148.20  Aligned_cols=221  Identities=11%  Similarity=0.102  Sum_probs=143.6

Q ss_pred             CCceEEEEecCCCeEEEEEe--------CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          365 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ..+...++  ||++++.+..        .++.|.+||+.+++...                    +    ..+..++|||
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45667778  8987555432        25679999998876432                    2    4688999999


Q ss_pred             CCCeEEEEECC---C--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC------------------
Q 001224          437 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------  493 (1120)
Q Consensus       437 dg~~las~~~d---g--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~------------------  493 (1120)
                      ||++||.++.+   +  .|.+|++.+++...    +..+.. +..++|+|||+.  |+.++.                  
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence            99999988754   3  47778888876443    323334 999999999995  554442                  


Q ss_pred             ---------CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCC-------eEEEEecCCCCCceeeeC
Q 001224          494 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA  557 (1120)
Q Consensus       494 ---------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~  557 (1120)
                               ...|.+||+.+++.+..+.. . .+..++|+  ++| +++++..++       ...+|.++ .+....+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence                     25799999999887555554 3 67778875  566 777775542       44555544 222221111


Q ss_pred             CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeEEEecCCCCCCcCe
Q 001224          558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR  629 (1120)
Q Consensus       558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~  629 (1120)
                      + .                     .+..  ++|+|++|+.++.+        ..|++||  +++.......  +...+..
T Consensus       216 ~-~---------------------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~~  267 (347)
T 2gop_A          216 K-V---------------------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE--VDRGVGQ  267 (347)
T ss_dssp             E-E---------------------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT--CCSEEEE
T ss_pred             C-c---------------------ceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc--CCcccCC
Confidence            1 1                     1111  26666677766643        4688888  5554333222  2235665


Q ss_pred             -EEEcCCCCEEEEEECCCcEEEEEccC
Q 001224          630 -IRFNKDGCLLAVSTNDNGIKILATSD  655 (1120)
Q Consensus       630 -~~~s~~~~~l~~~~~dg~i~iwd~~~  655 (1120)
                       +.|+ |+ ++++++.++.+++| +.+
T Consensus       268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          268 AKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             EEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             ccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence             8899 88 88899999999999 863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.54  E-value=8.4e-13  Score=146.58  Aligned_cols=282  Identities=12%  Similarity=0.116  Sum_probs=182.5

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      ..|.++.|++++..++..+.++.++.|.-.                 .|        .. +..  +...+.+++|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------~~-~~~--~~~~~~~~~~~~~g~   57 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PW--------LE-ISK--KGLQLEGLNFDRQGQ   57 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EE--------EE-EES--SCCCEEEEEECTTSC
T ss_pred             cccceeeecCCccceeEEeecccCcccccc-----------------ee--------EE-Eec--cCccccCcEECCCCC
Confidence            345566777777766666666666666210                 00        00 111  445678999999999


Q ss_pred             EEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEeecceeeEeec--ccccc
Q 001224          838 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR  910 (1120)
Q Consensus       838 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~  910 (1120)
                      +++++. ++.|.+||..+++.......+...+.+++++| +++++++...+    +.|.+||..+++....+.  .+...
T Consensus        58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  136 (333)
T 2dg1_A           58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC  136 (333)
T ss_dssp             EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred             EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence            777776 78999999988776554444667899999999 88888877666    689999988776543332  34567


Q ss_pred             eEEEEEccCCCEEEEEeC------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001224          911 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA  982 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~  982 (1120)
                      +.+++++|+|+++++...      .+.|..|+.++++..  ......       ..+..++|+|+|+.|+++  .++.|.
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE--EeecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence            899999999998887654      244555554443221  111111       135789999999876654  468999


Q ss_pred             EEEcCC-ceeeecc------ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCcc
Q 001224          983 IFETTK-LECVKQW------VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1055 (1120)
Q Consensus       983 i~d~~~-~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 1055 (1120)
                      +||..+ +..+..+      ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..|+   ...
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~  281 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR  281 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred             EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence            999964 3322111      11122 46788999999998888878899999998 5666665541110 0011   012


Q ss_pred             ceEEEecCCCCCEEEEEeCCC----cEEEEecC
Q 001224         1056 PLVIAAHPQEPNEFALGLSDG----GVHVFEPL 1084 (1120)
Q Consensus      1056 ~~~i~~~p~d~~~l~s~~~Dg----~v~vW~~~ 1084 (1120)
                      +..++|+| |++.|+.++.++    .-.||.+.
T Consensus       282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~  313 (333)
T 2dg1_A          282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVN  313 (333)
T ss_dssp             CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEE
T ss_pred             cceEEECC-CCCEEEEEeCccCCCCCceEEEEe
Confidence            34899998 566776665553    33455444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=8.4e-13  Score=162.82  Aligned_cols=248  Identities=10%  Similarity=-0.006  Sum_probs=163.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      |...+..++|||||++|+.+.+.+|    +|++||+.+++.+.. .                 +.  ...+..++|||||
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~~--~~~~~~~~wspDg  182 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDG  182 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------cc--CcccceEEEEeCC
Confidence            4446889999999997555544444    899999999987642 0                 11  1136789999999


Q ss_pred             CeEEEEECCCe----------------EEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecC-----CCc
Q 001224          439 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT  496 (1120)
Q Consensus       439 ~~las~~~dg~----------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-----d~~  496 (1120)
                      +.|+.++.++.                |++|++.++... ........|...+..++|+|||+.  |+.++.     +..
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR  260 (710)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred             CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence            99999988766                999999887632 111122335667889999999995  444332     568


Q ss_pred             EEEEECCC------Cc-eeEEeeccccCeEEEeeccCCCceEEEEEec-C---CeEEEEecCCCCC--ceeeeCCCCcee
Q 001224          497 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-D---GKIKAWLYDNLGS--RVDYEAPGRWCT  563 (1120)
Q Consensus       497 i~vwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~~v~  563 (1120)
                      |++||+.+      +. ....+..+...+... |++  +|..|+..+. +   +.|.+||+.+...  ...+..+..   
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---  334 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---  334 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence            99999987      53 456676676666553 444  3345554443 2   3699999876542  122222221   


Q ss_pred             EEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE
Q 001224          564 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  641 (1120)
Q Consensus       564 ~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  641 (1120)
                                      ...+..+.+++++..+++...++.  |++|++.+++.+..+..+  ...+..++++|++..++.
T Consensus       335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~  396 (710)
T 2xdw_A          335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY  396 (710)
T ss_dssp             ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred             ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence                            012333444444446777777874  666787778877777655  345778899999887664


Q ss_pred             EEC----CCcEEEEEccCc
Q 001224          642 STN----DNGIKILATSDG  656 (1120)
Q Consensus       642 ~~~----dg~i~iwd~~~~  656 (1120)
                      ...    .++|..||+.++
T Consensus       397 ~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          397 QFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEECSSCCCEEEEEETTSS
T ss_pred             EEeCCCCCCEEEEEECCCC
Confidence            432    478999999876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=8.9e-12  Score=136.33  Aligned_cols=205  Identities=12%  Similarity=0.095  Sum_probs=142.2

Q ss_pred             CccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee
Q 001224          826 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK  901 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~  901 (1120)
                      ....++|+|||+++.++.   ++.|.++|+.+++.+.++....  . ...+ |.+.+.+++.+.||.+.+.++.+ ++..
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEE
Confidence            355688999999888775   4789999999999988886422  1 2233 43566777788899998888876 5543


Q ss_pred             Eeecccc----cceE-EEEEc-cCCCEEEEEeCCCCEEEEECCCcccccceeeecc------CCCCCCCCCCcEEEEccC
Q 001224          902 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       902 ~~l~~h~----~~V~-~l~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~fspd  969 (1120)
                      .....+.    .++. ...|. ++|+++. .+.+|+|.+.|+.+............      .+..+  .....++++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~  290 (386)
T 3sjl_D          214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRA  290 (386)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETT
T ss_pred             EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCC
Confidence            2221111    2222 24664 6775554 56689999999977542211111100      11111  24566888999


Q ss_pred             CcEEEEEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCccee
Q 001224          970 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLR 1036 (1120)
Q Consensus       970 g~~la~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~ 1036 (1120)
                      ++.+.+..           ...|.++|+.+++.+..+..   ...+.+|+|++|++ +|+++. .++.|.|+|..+++.+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            99888852           14799999999999999875   34789999999997 676655 4899999999999999


Q ss_pred             eeeC
Q 001224         1037 CRIN 1040 (1120)
Q Consensus      1037 ~~~~ 1040 (1120)
                      ..+.
T Consensus       368 ~~i~  371 (386)
T 3sjl_D          368 RSVN  371 (386)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=1e-12  Score=144.97  Aligned_cols=238  Identities=11%  Similarity=0.128  Sum_probs=170.7

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      .....+++.. ++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus        44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            3456677743 33444444 7899999999999988885 346789999999 776655554789999999999988777


Q ss_pred             ecccc-----cceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001224          904 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  976 (1120)
Q Consensus       904 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-  976 (1120)
                      +....     .....+++ .+++.+++.. .++.|.+||..+++....  +..  +     .....++++|+|++++++ 
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence            65433     14567777 3444444443 488999999998654322  111  2     134788999999987774 


Q ss_pred             eC----------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccC
Q 001224          977 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1046 (1120)
Q Consensus       977 ~d----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~ 1046 (1120)
                      .+          +.|.++|..+++....+.... ...+..++|+||+++|+++..  .|.+||..+++....    .+.+
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence            33          689999999998877665322 347899999999999988754  999999999886421    1122


Q ss_pred             CCCCCCCccceEEEecCCCCCEEEEE----eCCCcEEEEecCCCC
Q 001224         1047 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1047 ~g~~~~~v~~~~i~~~p~d~~~l~s~----~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+    .-.|-.++++|+++.++++.    ..++.|.+|+.. ++
T Consensus       264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            11    12355899999767777777    678999999988 66

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.52  E-value=4.7e-12  Score=156.14  Aligned_cols=245  Identities=9%  Similarity=0.041  Sum_probs=169.0

Q ss_pred             ccccEEEEEEcCCCceEEEeccCc-----eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224          756 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  830 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l  830 (1120)
                      +...+..++|||||+.|+.+..++     .|++||+                      .+|+.....+    ....+..+
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~----------------------~tg~~~~~~~----~~~~~~~~  176 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV----------------------DGAKELPDVL----ERVKFSCM  176 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET----------------------TTTEEEEEEE----EEECSCCE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC----------------------CCCCCCcccc----cCcccceE
Confidence            445688999999999998776542     6777766                      3443322111    11236679


Q ss_pred             EEccCCCEEEEEe-CCc----------------EEEEEcCCCcee--e--eecCCCCCeEEEEEecCCCcEEEEEeC---
Q 001224          831 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKTM--A--TFMPPPPAATFLAFHPQDNNIIAIGMD---  886 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-dg~----------------i~vwd~~~~~~~--~--~~~~~~~~i~~l~~sp~d~~~lasg~~---  886 (1120)
                      +|+|||+.|+.++ ++.                |++|++.+++..  .  ....+...+..++|+| |+++|+.++.   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~  255 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC  255 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence            9999999999887 544                999999887632  2  2223455688999999 8888887765   


Q ss_pred             --CCcEEEEEeec------ce-eeEeecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCC
Q 001224          887 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG  953 (1120)
Q Consensus       887 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~  953 (1120)
                        +..|++||+.+      +. ....+..+...+.. .|+++|+.|+..+.++    .|.+||+.++.......+...  
T Consensus       256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~--  332 (710)
T 2xdw_A          256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE--  332 (710)
T ss_dssp             SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--
T ss_pred             CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC--
Confidence              56899999987      53 45667777766655 5889999887665533    599999987643222222211  


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE----cCCcEE
Q 001224          954 RTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVC 1026 (1120)
Q Consensus       954 ~~~~~~~i~~~~fspdg~~la~~-~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~ 1026 (1120)
                      ..  ...+..++|++++.++++. .++  .|.+|++.+++.+..+.  .+.+.|..++++|+++.++...    ..++|+
T Consensus       333 ~~--~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  408 (710)
T 2xdw_A          333 HE--KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY  408 (710)
T ss_dssp             CS--SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred             CC--CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence            11  0246778898777777774 666  46777876777666655  3477889999999998666432    347899


Q ss_pred             EEEcCCcc
Q 001224         1027 VFSAANLK 1034 (1120)
Q Consensus      1027 iwd~~~~~ 1034 (1120)
                      +||+.+++
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99999887

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2e-08  Score=125.12  Aligned_cols=609  Identities=11%  Similarity=0.097  Sum_probs=322.4

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      ...|++|.-..+|.  |-.|+.+| +..||-.+        |+.+.......  .  ...-....|.+|...++|..|-.
T Consensus        18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~--~--~~~l~~n~I~~i~~d~~g~~lWi   82 (781)
T 3v9f_A           18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEEQSS--S--VQSITGNELNEVYTDPVQPVIWI   82 (781)
T ss_dssp             CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCSSCS--S--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred             cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCCCCC--c--cccccccccceEEEcCCCCEEEE
Confidence            46799999999996  55566666 66677442        11221100000  0  00012346999999988884556


Q ss_pred             EECCCeEEEEEccCCceeeeeee-ecc---cccCeEEEEEcC--CCCceEEEEecCCCcEEEEECCCCceeEEee-----
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----  512 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-----  512 (1120)
                      |+.++-+..||..+++....... ...   ....|.++....  +|.   +..++.++.|..+|..+++......     
T Consensus        83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~  159 (781)
T 3v9f_A           83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA  159 (781)
T ss_dssp             EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred             EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence            77774599999987653221000 001   123688888877  665   4445545568899987766533211     


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      .....|.++..  +.++ .|..++.++-|..||..+.... .+...          +...   .......+..+..++++
T Consensus       160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~----------~~~~---~~l~~~~i~~i~~d~~g  222 (781)
T 3v9f_A          160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHD----------PQNP---NSLPGNDVRCIYKDTNG  222 (781)
T ss_dssp             CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTTC
T ss_pred             CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecC----------CCCc---ccCCCCceeEEEEcCCC
Confidence            11245777664  3343 4555666656888887653211 11100          0000   00011234555555555


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  667 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  667 (1120)
                      . |..++.+ -+.+||..+++........     -....|.++...++|.+. +|+..+.|.+++..++ ... .+....
T Consensus       223 ~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~-~~~~~~  297 (781)
T 3v9f_A          223 N-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQN-QFL-LPEQIR  297 (781)
T ss_dssp             C-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC-----------
T ss_pred             C-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCC-eee-eeeccc
Confidence            5 4445555 6899998776543221111     112458888888887654 5666567888887665 211 111000


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccce
Q 001224          668 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  747 (1120)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~  747 (1120)
                      ........... .+...                         .-..+.... ...+-.+..++-+..++.....    ..
T Consensus       298 f~~~~~~~~~~-~l~~~-------------------------~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~----~~  346 (781)
T 3v9f_A          298 FEFIREGDNNY-SLSNA-------------------------SARYIFQDS-FNNIWIGTWGGGINFISNAPPT----FH  346 (781)
T ss_dssp             CEEECBCSSTT-SBSSS-------------------------CEEEEEECS-SCCEEEEEBSSCEEEECSSCCS----CE
T ss_pred             cccccCCCCCC-CCCCC-------------------------eEEEEEEeC-CCCEEEEecCCeEEEeCCCCCc----ce
Confidence            00000000000 00000                         000011112 2344555555666666654321    11


Q ss_pred             eecc------CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224          748 SLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  821 (1120)
Q Consensus       748 ~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~  821 (1120)
                      .+..      +.......|.++...++|. |..++.++-+..|+.....+.            .+..          ...
T Consensus       347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~----------~~~  403 (781)
T 3v9f_A          347 TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE----------NRE  403 (781)
T ss_dssp             EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC---------------
T ss_pred             eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC----------CCC
Confidence            1110      1112346789999988887 555665555666665322110            0000          000


Q ss_pred             CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          822 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      .....|.+++..++|.+.+...++.|..++..+++......  .....|.++...+ ++++.+ |+. +-|..||..+++
T Consensus       404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSS
T ss_pred             CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCe
Confidence            13567889998888876664436789999987765432221  2345789998887 666544 555 558889987765


Q ss_pred             eeEeeccc-----ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          900 VKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       900 ~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      ........     ...|.++...++|.+.+....+| |..||..+++..   ......+  .....|.++...++|.+.+
T Consensus       481 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~--l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          481 VIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEG--FCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             CCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTT--CSCSCEEEEEECTTSCEEE
T ss_pred             EEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCC--CCCCeeEEEEECCCCCEEE
Confidence            43322212     46789999998887766443345 777887764321   1111111  1124678899999998777


Q ss_pred             EEeCCeEEEEEcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224          975 VVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus       975 ~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
                      .+.+|-+..||..+++...--...+ ....|.++...++|.+.+++ .+| |..|+..+++.. .+....-++..    .
T Consensus       555 ~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~-~~~~~dGl~~~----~  627 (781)
T 3v9f_A          555 ATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFY-TYDHSNNIPQG----S  627 (781)
T ss_dssp             EETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEE-EECGGGTCCSS----C
T ss_pred             EECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceE-EecccCCcccc----c
Confidence            6664443889887765432111111 14568899999999876644 445 777888776543 33322222211    1


Q ss_pred             ccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      ...-++...+ +| .|..|+.+| +..+++..
T Consensus       628 f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~  656 (781)
T 3v9f_A          628 FISGCVTKDH-NG-LIYFGSING-LCFFNPDI  656 (781)
T ss_dssp             EEEEEEEECT-TS-CEEEEETTE-EEEECSCC
T ss_pred             cccCceEECC-CC-EEEEECCCc-eEEEChhh
Confidence            1122455555 45 455566677 56667654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=2.7e-11  Score=135.25  Aligned_cols=204  Identities=9%  Similarity=0.004  Sum_probs=140.9

Q ss_pred             ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224          827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  902 (1120)
                      ...++++|||+++++++   ++.|.++| .+++.+.. +....    ++.+.|++.+.+++.+.||.+.++|. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            34688999999988875   36799999 99988877 65322    25566645567777888999999999 877653


Q ss_pred             eec-----ccccce-EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCC----CCCCCCCcEEEEccCCcE
Q 001224          903 KLK-----GHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       903 ~l~-----~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~fspdg~~  972 (1120)
                      ...     ....++ ....+.+++..++..+.++.+.+.|+.+........+......    .........++++||++.
T Consensus       201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            321     111221 2356677766655555788899999876432211111111100    000123345889999998


Q ss_pred             EEEEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeee
Q 001224          973 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       973 la~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
                      +.++.           .+.|.++|+.+++.+..+..   .....+++|+|||+ +++++. .++.|.|||+.+++.+..+
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            88742           25799999999999988864   33689999999999 777777 4899999999999999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=3.1e-11  Score=131.41  Aligned_cols=281  Identities=11%  Similarity=0.107  Sum_probs=190.3

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      +...+.+++++++|+.+++...++.|.+|+..                       +.........  ....+.+++++++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~   67 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD   67 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence            44678999999999977776667888887652                       2211111111  3456889999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe-ecccccceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~  912 (1120)
                      |...++.. ++.|..||.. ++.. ..+......+.++++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus        68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~  144 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS  144 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence            99888776 7889999986 3321 22223455789999999 8888887777889999998 5544322 233456789


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  991 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~  991 (1120)
                      ++++.++|.++++...++.|..||. +++...   .... ..   ...+..++++++|.+.++. .++.|.+||. +++.
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            9999999988888777888999998 543211   1111 11   1356899999999977665 4789999999 6654


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      .. +....+...+.+++++++|+++++...++.|.+||. +++.. .+.    .+.+  .  -.+.++++ + ++.+.++
T Consensus       216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~  282 (299)
T 2z2n_A          216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA  282 (299)
T ss_dssp             EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred             EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence            33 333344678999999999997776657889999998 45433 332    1211  1  12347788 6 5666665


Q ss_pred             EeCCCcEEEEecCCCC
Q 001224         1072 GLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .. .+.+..+++.+++
T Consensus       283 ~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          283 ME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             ET-TTEEEEEEEC---
T ss_pred             ec-CCcEEEEEcCccc
Confidence            54 6778888877643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=1.9e-12  Score=138.11  Aligned_cols=251  Identities=10%  Similarity=0.031  Sum_probs=180.9

Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cce
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI  911 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V  911 (1120)
                      .++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++|+  +.++.|+.||. +++.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456788887 8999999999999999998766 4789999999 888888  35778999998 899998888753 578


Q ss_pred             EEEEEccCCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001224          912 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL  989 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~  989 (1120)
                      .++.+.+||+++++.+. ++.|..+|. .++......+.  .+..........+++.++|.++++. .++.|..||.. |
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            89999999999999887 677777775 33332222211  1100001234567889999999985 78999999998 9


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
                      +.+..+..   ...+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+..   .-..+..++..+ +++++
T Consensus       156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred             CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence            88877763   2456778889999999999888899999999999998876211 1111   112345677777 57777


Q ss_pred             EEEe--CC------CcEEEEec-CCCCCCCCCCCCCCCCCC
Q 001224         1070 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGST 1101 (1120)
Q Consensus      1070 ~s~~--~D------g~v~vW~~-~~~~~~~~~~~p~~~~~~ 1101 (1120)
                      ++..  ..      +..+++++ .+++-.|......+-|.+
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~  268 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI  268 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence            7763  11      24466666 466677776555444433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=3.4e-12  Score=140.78  Aligned_cols=273  Identities=10%  Similarity=0.017  Sum_probs=183.4

Q ss_pred             CCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeec
Q 001224          728 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  807 (1120)
Q Consensus       728 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~  807 (1120)
                      .++.+.++|..+.+.......- ............+.+. +++..++...++.|.+||.                     
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~-~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~---------------------   71 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYR-ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDI---------------------   71 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHH-HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEET---------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhh-hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEEC---------------------
Confidence            4788999998764432211100 0001112345667774 4555555556788888775                     


Q ss_pred             CCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCC-----CCeEEEEEecCCCcEE
Q 001224          808 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII  881 (1120)
Q Consensus       808 ~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l  881 (1120)
                       .+++.+... .   .......++++++++..++.. ++.|.+||..+++....+....     .....+++ . +++++
T Consensus        72 -~t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           72 -NTFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             -TTCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             -cccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence             344432221 1   235678899999996555553 8999999999988877665332     14567777 4 66666


Q ss_pred             EEEe-CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCC----------CCEEEEECCCcccccceeeec
Q 001224          882 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI  950 (1120)
Q Consensus       882 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~v~iWd~~~~~~~~~~~~~~  950 (1120)
                      ++.. .++.|.+||+.+++.+..+... .....++++++|++++++..+          +.|.+||..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            6654 4889999999999888777643 345789999999988777655          789999998865322  2222


Q ss_pred             cCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC-CcEEEEE----EcCCcE
Q 001224          951 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-SQLVYAC----FLDATV 1025 (1120)
Q Consensus       951 ~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~----~~Dg~v 1025 (1120)
                      ..+     .....++|+|++++|.++.. .|.+||..+++.........+......++++|+ ++++++.    ..++.|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     14689999999999888654 999999998876432222222467899999995 4445554    467999


Q ss_pred             EEEEcCCcceeeeeC
Q 001224         1026 CVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1026 ~iwd~~~~~~~~~~~ 1040 (1120)
                      .+||.. ++.+..+.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 99888776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=7.3e-13  Score=162.79  Aligned_cols=241  Identities=13%  Similarity=0.066  Sum_probs=161.9

Q ss_pred             CCCCccEEEEccCCCEEEEEe------CCcEEEEEcCCCcee-eeecCCCCCeEEEEEecCCCcEEEEEeCCCc------
Q 001224          823 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------  889 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~------  889 (1120)
                      |...+.+++|||||++||.+.      +.+|++||+.+++.+ .... .......++|+| |++.|+.++.|..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            455688999999999999553      257999999998865 2111 111126899999 8999998888776      


Q ss_pred             -------EEEEEeecce----eeEeecccccceEEEEEccCCCEEEEEeCCC----CEEEEECCCcccccceeeeccCCC
Q 001224          890 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR  954 (1120)
Q Consensus       890 -------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~~~~~~~  954 (1120)
                             |++|++.++.    ++.....|...+.++.|||||++|+.++.++    .|.+|+..+++.   ..+....  
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~--  271 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV--  271 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence                   9999998765    4444455667889999999999998877666    566776544321   2222211  


Q ss_pred             CCCCCCCcEEEEccCCcEEEE-Ee----CCeEEEEEcCCcee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEE
Q 001224          955 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1027 (1120)
Q Consensus       955 ~~~~~~i~~~~fspdg~~la~-~~----d~~v~i~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~i 1027 (1120)
                          ..+....+ ++|. ++. +.    ++.|.+||+.+++.  ...+........+..++|+ ++.++++...|+..+|
T Consensus       272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                13455556 6666 554 43    47899999987653  2233322224568889998 7888999999999888


Q ss_pred             EEcC-CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE-EE---eCCCcEEEEecCCCC
Q 001224         1028 FSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LG---LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1028 wd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~-s~---~~Dg~v~vW~~~~~~ 1087 (1120)
                      |.++ +++....+.    ++.   ...+.  .++++| |++.++ +.   ...++|++||+.+++
T Consensus       345 ~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          345 RVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8765 455554444    221   11133  567888 566655 33   234789999998877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.48  E-value=4e-12  Score=138.30  Aligned_cols=238  Identities=10%  Similarity=0.068  Sum_probs=165.7

Q ss_pred             cccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          757 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       757 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      .....+++|+|+|+ .+++...++.|..|+...                      + ...  +..  +...+.+++++++
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~----------------------~-~~~--~~~--~~~~~~~l~~~~d   79 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG----------------------Q-LSP--EMH--PSHHQNGHCLNKQ   79 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS----------------------C-EEE--EES--SCSSEEEEEECTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC----------------------C-eEE--EEC--CCCCcceeeECCC
Confidence            34567899999998 667777788888887532                      2 111  111  4566889999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceeeeecCC----CCCeEEEEEecCCCcEEEEE----eC-------------CCcEEEE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIG----MD-------------DSSIQIY  893 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg----~~-------------dg~v~vw  893 (1120)
                      |+++++.. ++.|.+||..+++........    ...+..++++| +|+++++.    +.             .+.|..+
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEE
Confidence            99887776 688999999877754333211    23467899999 88888873    21             2345444


Q ss_pred             EeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECC-Cccc-ccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224          894 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEK-QKNRFLQIPTGRTPTAQSDTRVQFHQDQI  971 (1120)
Q Consensus       894 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~-~~~~~~~~~~~~~~~~~~i~~~~fspdg~  971 (1120)
                      +.. ++ +..+..+.....+++|+||++.|++.+.++.|.+|++. .++. ......   ...   ...+..++++++|+
T Consensus       159 ~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~---~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          159 APD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVE---PGKTDGLRVDAGGL  230 (296)
T ss_dssp             CTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCS---SSCCCSEEEBTTSC
T ss_pred             CCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCC---CCCCCeEEECCCCC
Confidence            443 43 44555666778999999999999888888999999997 3332 111222   111   13567899999999


Q ss_pred             EEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEE-CCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          972 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATF-SCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       972 ~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~-s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      ++++. ++.|.+||.. ++.+..+.  .+.. +++++| +||++.|++++.++ +.-++..+.++.
T Consensus       231 l~v~~-~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          231 IWASA-GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEEEE-TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             EEEEc-CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            77777 8999999987 66666665  3344 999999 68999999888764 555566665544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=5.1e-11  Score=132.10  Aligned_cols=246  Identities=13%  Similarity=0.081  Sum_probs=163.2

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      ...+...+.+++|+|+|+ |++++..++.|.+||..+++....                   ...+...+.+++|+|+|+
T Consensus        40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~   99 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGR   99 (333)
T ss_dssp             EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSC
T ss_pred             EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCc
Confidence            344677889999999999 688888899999999988765431                   223556899999999999


Q ss_pred             eEEEEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeE
Q 001224          440 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQY  509 (1120)
Q Consensus       440 ~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~  509 (1120)
                      ++++...+    +.|.+||.+++...... .-..+...+.+++++|+|+  ++++...      .+.|..||..+++...
T Consensus       100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~  176 (333)
T 2dg1_A          100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP  176 (333)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE
T ss_pred             EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEE
Confidence            88887766    68999999887643211 1113456799999999998  5555543      3456666655555433


Q ss_pred             EeeccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                       +..+...+..++|++  ++..| ++.+.++.|.+||+..... ...+..      .+.....+        ......++
T Consensus       177 -~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i~  239 (333)
T 2dg1_A          177 -IIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSCC  239 (333)
T ss_dssp             -EEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEEE
T ss_pred             -eecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCceE
Confidence             323344577788754  45544 4555678999999864322 211100      00000000        01345577


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----CCCcCeEEEcCCCCEEEEEECCC
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDGCLLAVSTNDN  646 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg  646 (1120)
                      ++++|+.+++...++.|.+||. +++.+..+.....    ...+.+++|+||++.|++++.++
T Consensus       240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            7788777777778899999998 5666666654321    12478999999988777666653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=5.8e-12  Score=134.97  Aligned_cols=238  Identities=11%  Similarity=0.063  Sum_probs=166.4

Q ss_pred             CccEEEEccCCCEEE-EEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          826 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...+++++++|+.++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence            678999999999776 434 78899999866543322223345688999999 787666555 88999999765543 33


Q ss_pred             ec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeE
Q 001224          904 LK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL  981 (1120)
Q Consensus       904 l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v  981 (1120)
                      +. .....+.+++++++|+++++...++.|.+|+..+....    .. ....   ...+..++++++|+++++. .++.|
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~-~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i  173 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VL-PFTG---LNDPDGVAVDNSGNVYVTDTDNNRV  173 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----EC-CCCS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----ee-cccc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence            32 33356899999999998888778889999975543211    11 1111   1256889999999977665 56899


Q ss_pred             EEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEe
Q 001224          982 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061 (1120)
Q Consensus       982 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~ 1061 (1120)
                      .+||...........  .+...+.+|+++++|.++++...++.|.+|+..+..... ..     ..+    .-.+..+++
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~  241 (270)
T 1rwi_B          174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAV  241 (270)
T ss_dssp             EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEE
T ss_pred             EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEE
Confidence            999988766543322  224678999999999877777778899999987654432 11     011    023458999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1062 HPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1062 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +| +++++++...++.|+++++...+
T Consensus       242 ~~-~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          242 DS-DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence            99 57888999999999999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.47  E-value=2.3e-12  Score=158.32  Aligned_cols=283  Identities=10%  Similarity=-0.043  Sum_probs=176.9

Q ss_pred             cCCCcceeeccCCC---cceeeecccCCCCccceeeccC---CccccccEEEEEEcCCCceEEEe-----ccCceEEEee
Q 001224          717 LADVKPRITEESND---KSKVWKLTELSEPNQCRSLRLP---ENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWK  785 (1120)
Q Consensus       717 ~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~~~-----~~dg~i~vw~  785 (1120)
                      .+++++++....++   ...+|......  .....+.-+   ..+|...+..++|||||+.|+.+     +.+..|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence            36777776555433   35566654321  112222111   12455678999999999998843     3345788777


Q ss_pred             ecccccCCCCccccccCceeecCCCCCcc-cccCCCCCCCCCccEEEEccCCCEEEEEe-CCc-------------EEEE
Q 001224          786 WQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK-------------ISLF  850 (1120)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~-------------i~vw  850 (1120)
                      +.                      +|+.+ ...+    .......++|+|||+.|+.++ +..             |++|
T Consensus       154 l~----------------------tg~~~~~~~~----~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          154 VD----------------------SGEWSKVDVI----EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             TT----------------------TCCBCSSCCB----SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             CC----------------------CCCCcCCccc----CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            63                      33332 1111    111226799999999999887 554             9999


Q ss_pred             EcCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeEeecccccceEEEEEccCCCE
Q 001224          851 NMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV  922 (1120)
Q Consensus       851 d~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~  922 (1120)
                      ++.+++    ++.....+...+..+.||| ||++|+.++.++    .|++|+..+++ ...+..+...+....+ ++|.+
T Consensus       208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l  284 (695)
T 2bkl_A          208 TLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRF  284 (695)
T ss_dssp             ETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEE
T ss_pred             ECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcE
Confidence            998876    2333334556789999999 888888777665    66677654444 4555566666677767 56664


Q ss_pred             EEEEe---CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-Cceeeecccc
Q 001224          923 LVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVP  997 (1120)
Q Consensus       923 l~s~s---~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~~~~~~  997 (1120)
                      +++..   .++.|.+||+.+++......+.  ..+..  ..+..++|+ ++.++++ ..|+..+||.+. +++....+..
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~  359 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARASWKEIV--PEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL  359 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGGCEEEE--CCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccCCeEEe--cCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence            45544   2578999999876432212222  11111  246778888 6666666 478877777654 3554444432


Q ss_pred             CCCCCCeeEEEECCCCcEEEEEE----cCCcEEEEEcCCccee
Q 001224          998 RESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKLR 1036 (1120)
Q Consensus       998 ~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~iwd~~~~~~~ 1036 (1120)
                       .+.+.|..++++||++.|+...    ..++|++||+.+++..
T Consensus       360 -~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          360 -PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             -SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             -CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence             2256788899999998776333    3478999999988753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=2.2e-10  Score=124.55  Aligned_cols=238  Identities=10%  Similarity=0.029  Sum_probs=163.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +...+.+++++++|+ ++++...++.|.+||.. ++....                  .+..+...+.+++++++|++++
T Consensus        13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence            457899999999999 56665557899999988 543321                  0122446799999999999888


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE-eeccccCeEEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSV  521 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~  521 (1120)
                      +...++.|..|+.. ++ +.. ..+......+.++++.++|.  ++++...++.|.+||. +++.... ...+...+..+
T Consensus        73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            87778899999987 33 221 12333456799999999998  6777777889999998 6654432 23344567888


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceee--eCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      ++.  +++.+.++...++.|..||. +.. ...+  .....                     ....++++++++.+++..
T Consensus       147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~---------------------~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          147 TLG--SDNALWFTENQNNAIGRITE-SGD-ITEFKIPTPAS---------------------GPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             EEC--TTSCEEEEETTTTEEEEECT-TCC-EEEEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred             EEc--CCCCEEEEeCCCCEEEEEcC-CCc-EEEeeCCCCCC---------------------cceeEEECCCCCEEEEcc
Confidence            874  45567776666789999987 332 2211  11112                     334555666666666666


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                      .++.|.+||. +++... +........+.+++++++|+++++...++.|..||.
T Consensus       202 ~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          202 IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            6889999999 666433 332323346789999999997766657788999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=6.8e-12  Score=134.42  Aligned_cols=239  Identities=8%  Similarity=0.030  Sum_probs=161.5

Q ss_pred             CceEEEEecCCCeEEE-EEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          366 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      ...+++++|+|+ +++ +.+.++.|.+||..++....                   ....+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence            788999999998 566 55778999999976654322                   012233567889999999966665


Q ss_pred             ECCCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEee
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  523 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  523 (1120)
                      . ++.|.+||..+.....    +. .....+..++++++|.  ++++...++.|.+|+..+.............+.++++
T Consensus        85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 8899999988754321    22 2335789999999998  6777777889999986655443322233345667777


Q ss_pred             ccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCe
Q 001224          524 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  603 (1120)
Q Consensus       524 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  603 (1120)
                      .  ++|.++++...++.|.+||...............                     ....++++++|..+++...++.
T Consensus       158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred             e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence            5  4556777777788999999775432211111112                     3345566666656666667889


Q ss_pred             EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          604 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       604 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      |.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus       215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            9999987654332 22 122245789999999998888888999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.46  E-value=7.2e-12  Score=137.08  Aligned_cols=277  Identities=9%  Similarity=0.042  Sum_probs=184.8

Q ss_pred             EEcCCCceEEEecc-----CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          764 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       764 ~~s~~g~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      ...|+++.+++...     ++.+.+.|.                      .+++.+.....+   ..+  .++++|||++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~~   91 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGSF   91 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCCE
Confidence            34578887776654     456666654                      444433322211   222  4999999998


Q ss_pred             EEEEe-----------CCcEEEEEcCCCceeeeecCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecc
Q 001224          839 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD  898 (1120)
Q Consensus       839 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~  898 (1120)
                      +++++           ++.|.+||..+++.+.++....       .....++|+| ||++|+++..  ++.|.++|+.++
T Consensus        92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D           92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence            87764           4679999999999888774321       2466799999 8888887763  689999999999


Q ss_pred             eeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCC-cccccceeeeccCCCCCCCCCC-cEEEEc-cCCcEEEE
Q 001224          899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQFH-QDQIHFLV  975 (1120)
Q Consensus       899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~fs-pdg~~la~  975 (1120)
                      +.+.++.-...   ...+....+.+++.+.||++.+.++.+ ++..... .....   .....+ ....|. ++|+++.+
T Consensus       171 ~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v  243 (386)
T 3sjl_D          171 AFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP  243 (386)
T ss_dssp             EEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred             cEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence            99888853221   223433456777888899999998876 4431111 01111   101122 234664 78888778


Q ss_pred             EeCCeEEEEEcCCce--eeeccc--------cCCCCCCeeEEEECCCCcEEEEEEc----------CCcEEEEEcCCcce
Q 001224          976 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1035 (1120)
Q Consensus       976 ~~d~~v~i~d~~~~~--~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~iwd~~~~~~ 1035 (1120)
                      +.++.|.+.|+.+..  .+..+.        ..-....+..++++++++.|+.+..          ...|.+.|+.+++.
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv  323 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  323 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence            788999999997653  333332        0001234456788999998888753          25799999999999


Q ss_pred             eeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEE-eCCCcEEEEecCCCC
Q 001224         1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~-~~Dg~v~vW~~~~~~ 1087 (1120)
                      +.++.    ....     .+  ++++++ |++ +|+++ ..++.|.|+|..+++
T Consensus       324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence            99887    2211     33  899999 455 66664 458999999999988

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=3.5e-08  Score=122.80  Aligned_cols=509  Identities=11%  Similarity=0.074  Sum_probs=284.4

Q ss_pred             CCceEEEEec--CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          365 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       365 ~~v~~v~~sp--dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ..|+++....  +|.  |-.|+.++.|..||..+++....      ....        ...-....|.++...++|.+.+
T Consensus       115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi  178 (781)
T 3v9f_A          115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI  178 (781)
T ss_dssp             SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred             CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence            4688988888  776  44456556788999877654321      0000        0001234688988888877665


Q ss_pred             EEECCCeEEEEEccCCceeeeeeee----cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeec-----
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----  513 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-----  513 (1120)
                       |+.++-|..||..+++........    .-....|.++...++|.   |..|+.+ -+.+||..+++.......     
T Consensus       179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~  253 (781)
T 3v9f_A          179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN---IWIGTSK-GLALFNANTETFTNFHNNPGNIH  253 (781)
T ss_dssp             -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC---EEEEETT-EEEEEETTTTEEEC---------
T ss_pred             -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC---EEEEeCC-cHheECCCCCcEEEEEcCCCccc
Confidence             555645888998876532210000    00135699999988887   3334444 688999877654322111     


Q ss_pred             --cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          514 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       514 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                        ....|.++..  +.+| .|..|+..+-|.++|..+.........   ....+. .+...   .+.....+.++..+.+
T Consensus       254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~  323 (781)
T 3v9f_A          254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF  323 (781)
T ss_dssp             --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred             cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence              2356887774  4454 455566646677888765432111000   000000 00000   0112234555666666


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEEe-------cCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                      |. |-.|+.++-|..++..++.......       ..-....|.++...++|.+. +|+.++.|..|+..++. . ..+.
T Consensus       324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~  399 (781)
T 3v9f_A          324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV-A-IYNK  399 (781)
T ss_dssp             CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE-E-ECC-
T ss_pred             CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe-E-EEcc
Confidence            55 6667777888999887654332211       01112357888888887755 56666778888865431 0 0000


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCc
Q 001224          665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  744 (1120)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~  744 (1120)
                      .   .                                                                           
T Consensus       400 ~---~---------------------------------------------------------------------------  401 (781)
T 3v9f_A          400 E---N---------------------------------------------------------------------------  401 (781)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C---C---------------------------------------------------------------------------
Confidence            0   0                                                                           


Q ss_pred             cceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCC
Q 001224          745 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  824 (1120)
Q Consensus       745 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~  824 (1120)
                              .......|.++...++|. |..++.++.+..++..                      ++........ ....
T Consensus       402 --------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~----------------------~~~~~~~~~~-~~~~  449 (781)
T 3v9f_A          402 --------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTR----------------------LKKFQIIELE-KNEL  449 (781)
T ss_dssp             ----------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSS----------------------SCEEEECCST-TTCC
T ss_pred             --------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCC----------------------CCcEEEeccC-CCCC
Confidence                    000235677888888887 4445555556666542                      2221111000 0134


Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  899 (1120)
                      ..|.++...++|...+.. .+.|..+|..+++........     ...|.++...+ ++++.+ |+.++-|..||..+++
T Consensus       450 ~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence            678899988888755544 467999998776543332212     35689999888 676554 5554457778876654


Q ss_pred             eeEeecc----cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          900 VKSKLKG----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       900 ~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      .. .+..    ....|.++...++|.+.++.. +|.|..||..+++.   .......+-.  ...|.++...++|.+.++
T Consensus       527 ~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~---~~~~~~~gl~--~~~i~~i~~d~~g~lW~~  599 (781)
T 3v9f_A          527 VR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY---QVFQRKEGLP--NTHIRAISEDKNGNIWAS  599 (781)
T ss_dssp             EE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC---EEECGGGTCS--CCCCCEEEECSSSCEEEE
T ss_pred             EE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE---EEccccCCCC--CceEEEEEECCCCCEEEE
Confidence            33 2321    245789999988888766544 66548888776432   2222222222  135788999999987766


Q ss_pred             EeCCeEEEEEcCCceeeeccccCCC-CC--CeeEEEECCCCcEEEEEEcCCcEEEEEcC
Q 001224          976 VHETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus       976 ~~d~~v~i~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                      + .+.|..|+..+.....--...+- ..  ...++...++|++++ |+.+|. ..++..
T Consensus       600 t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~  655 (781)
T 3v9f_A          600 T-NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD  655 (781)
T ss_dssp             C-SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred             c-CCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence            5 44577888876654322111121 11  235677788888666 566774 445544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.44  E-value=1.4e-10  Score=129.41  Aligned_cols=237  Identities=11%  Similarity=0.028  Sum_probs=161.5

Q ss_pred             EEEEccCCCEEEEEe-----------CCcEEEEEcCCCceeeeecCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001224          829 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS  888 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg  888 (1120)
                      .++++|||++++++.           ++.|.+||..+++.+.++...       ......++|+| |+++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            899999999999874           467999999998887776432       12356899999 8888888764  57


Q ss_pred             cEEEEEeecceeeEe-ecccccceEEEEEccCC-CEEEEEeCCCCEEEEECCCcccccceee-eccCCCCCCCCCCcEEE
Q 001224          889 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       889 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~  965 (1120)
                      .|.++| .+++.+.. +....    ++.+.|++ +.+++.+.||.+.+++. +++....... ....+..+   ......
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p---~~~~~~  219 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN---LLTQPA  219 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc---eeecce
Confidence            899999 99988877 54322    24455655 45667788999999999 6544311100 00111110   112345


Q ss_pred             EccCCcE-EEEEeCCeEEEEEcCCce--eeeccccCC--------CCCCeeEEEECCCCcEEEEEEc----------CCc
Q 001224          966 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1024 (1120)
Q Consensus       966 fspdg~~-la~~~d~~v~i~d~~~~~--~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~----------Dg~ 1024 (1120)
                      +.+++.. ++++..+.+.+.|+.++.  .+..+....        .......++++||++.|+++..          .+.
T Consensus       220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            6666544 444677889999987552  222221100        1233445889999998887654          357


Q ss_pred             EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecCCCC
Q 001224         1025 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1087 (1120)
Q Consensus      1025 v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1087 (1120)
                      |.++|..+++.+.++.    ...       .+..++|+| |++ +++++. .++.|.|||+.+++
T Consensus       300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence            9999999999998876    111       233799999 577 777777 58999999999988

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=1.6e-11  Score=130.90  Aligned_cols=232  Identities=12%  Similarity=0.090  Sum_probs=164.9

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEEEECCCeEEEEEccC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  457 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~dg~v~iwd~~~  457 (1120)
                      +|++++.|+.|.+||.++|+.+.+                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            699999999999999999998764                   22233 4688999999999999  45788999999 7


Q ss_pred             Cceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEecC-CCcEEEEECCCCceeEEeec------cccCeEEEeeccCCCc
Q 001224          458 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI  529 (1120)
Q Consensus       458 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s~-d~~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~  529 (1120)
                      |+.+..   +..+ ...+.++.+.++|+  ++++.+. ++.|..+|. +|+.+..+..      +......+++  .++|
T Consensus        65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            776653   4333 34688999999999  6777766 777888884 7888777642      1122333333  5677


Q ss_pred             eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224          530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  609 (1120)
Q Consensus       530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  609 (1120)
                      .++++...++.|..||.. ++.+.++.... .+.+                     +...++++.+++++.++.|..+|.
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence            899999999999999987 67666665432 1222                     344555667888888889999999


Q ss_pred             CCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECC--------CcEEEEEccCcchhhhhc
Q 001224          610 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       610 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~  663 (1120)
                      .+|+.+..+....    ....+..++..++|.++++....        +..+++.+....+.+..+
T Consensus       194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            9999999886321    12336778889999998887532        234566663332444444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=1.1e-10  Score=130.43  Aligned_cols=207  Identities=12%  Similarity=0.082  Sum_probs=143.0

Q ss_pred             ccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          827 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...++++|||++++++.   ++.|.+.|+.+++.+.++....    +....|++.+.+++.+.||.+.+.+..+++....
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence            44578899999888875   3689999999999888876422    1334453446666677788888888765554422


Q ss_pred             ----ecccccce-EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC----CCCCCCcEEEEccCCcEEE
Q 001224          904 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       904 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~fspdg~~la  974 (1120)
                          +.....++ ..+.|++++..++..+..+.|.+.|+..................    ........++++||++.+.
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly  334 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY  334 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence                22222222 23578999988877788899999998664321111111110000    0001234579999998877


Q ss_pred             EEe-----------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCc-EEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          975 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       975 ~~~-----------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +..           .+.|.++|..+.+.+..+...   ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence            742           247999999999999988753   3689999999999 888888 58999999999999998873

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=3.2e-11  Score=149.21  Aligned_cols=282  Identities=12%  Similarity=0.064  Sum_probs=172.9

Q ss_pred             cCCCcceeeccCCC---cceeeecccCC-CCccceeeccC---CccccccEEEEEEcCCCceEEEeccC-----ceEEEe
Q 001224          717 LADVKPRITEESND---KSKVWKLTELS-EPNQCRSLRLP---ENLRATKISRLIFTNSGNAILALASN-----AIHLLW  784 (1120)
Q Consensus       717 ~~~~~~l~~~~~d~---~i~vw~~~~~~-~~~~~~~~~~~---~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~i~vw  784 (1120)
                      .+++++++....++   ...+|...... .......+.-+   ..++...+..++|||||+.|+.+..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            47787776555443   35667665320 00111111101   12233578899999999998877654     346666


Q ss_pred             eecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCc--------------EEE
Q 001224          785 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK--------------ISL  849 (1120)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~--------------i~v  849 (1120)
                      |+                      .+|..+....    +...+..++|+|| +.|+.++ ++.              |++
T Consensus       195 dl----------------------~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~  247 (741)
T 1yr2_A          195 GV----------------------ADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL  247 (741)
T ss_dssp             ET----------------------TTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred             EC----------------------CCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence            65                      4444332111    1122357899999 9888876 433              899


Q ss_pred             EEcCCCce--eeeec--CCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecc--eeeEeecccccceEEEEEcc
Q 001224          850 FNMMTFKT--MATFM--PPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH  918 (1120)
Q Consensus       850 wd~~~~~~--~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~  918 (1120)
                      |++.++..  ...+.  .+...+..+.||| ||++|+..+.++     .|++||+.++  +....+..+...+.... +|
T Consensus       248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~  325 (741)
T 1yr2_A          248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG  325 (741)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred             EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence            99987652  22232  2333588999999 898888777554     8999999887  31456666665555553 48


Q ss_pred             CCCEEEEEeCC----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-Cceee
Q 001224          919 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV  992 (1120)
Q Consensus       919 d~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~-~~~~~  992 (1120)
                      +|+.|+..+.+    +.|.+||++++. ..  .......+.   ..+..+.++ ++.++++ ..|+..+||.+. ++...
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence            99988877764    449999988743 11  112222222   235567776 4555555 477776666554 35555


Q ss_pred             eccccCCCCCCeeEEEECCCCcEEEEEE----cCCcEEEEEcCCcce
Q 001224          993 KQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1035 (1120)
Q Consensus       993 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~iwd~~~~~~ 1035 (1120)
                      ..+.. .+.+.|..++++||++.|+...    ..++|++||+.+++.
T Consensus       399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            54442 2356789999999998666332    347899999998874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=1.6e-09  Score=117.87  Aligned_cols=278  Identities=8%  Similarity=0.041  Sum_probs=186.5

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ....+.++++.++|+..++...++.|.+|+..                       +......+..  ....+.+++++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~   72 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--PDAKVMCLIVSSL   72 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--TTCCEEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--CCCcceeEEECCC
Confidence            34678899999999977777677888887652                       1111111111  3456889999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-eecccccceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~  912 (1120)
                      |+..++.. ++.|..||.. ++... .+......+.++++++ +++++++...++.|..||.. ++... .+......+.
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            98777766 6889999987 55432 2232346789999999 88888777668899999977 55442 2333456789


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCcee
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  991 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~  991 (1120)
                      ++++.++|++.++...++.|..|+. +++..   .... ....   ..+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~-~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPL-PTNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEEC-SSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeC-CCCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence            9999999997777766788999988 43321   1111 1111   356899999999877775 4568999998 4544


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      ... ....+...+.+++++++|++.++...++.|..||. +++.. .+.    .+.+  .  -.+.++++++ ++++.++
T Consensus       221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~  288 (300)
T 2qc5_A          221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA  288 (300)
T ss_dssp             EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred             EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence            332 22234567899999999997776666789999998 45443 222    1211  1  1233788888 5665555


Q ss_pred             EeCCCcEEEEecC
Q 001224         1072 GLSDGGVHVFEPL 1084 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~~ 1084 (1120)
                      .. . .|..+++.
T Consensus       289 ~~-~-~i~~~~p~  299 (300)
T 2qc5_A          289 LK-C-KIGKLNLN  299 (300)
T ss_dssp             CS-S-EEEEEEEC
T ss_pred             cc-C-ceEEeCCC
Confidence            44 4 67766653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2.9e-10  Score=124.74  Aligned_cols=256  Identities=13%  Similarity=0.084  Sum_probs=161.0

Q ss_pred             cCCCCceEEEEecCCCeEEEE-------EeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          362 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ..-....+++|+++|. ++++       +..++.|.+||..+++.... ..     .         ...++...+.++++
T Consensus        15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~-----~---------~~~~~~~~~~~i~~   78 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK-----P---------EVNGYGGIPAGCQC   78 (314)
T ss_dssp             CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC-----C---------EETTEECCEEEEEE
T ss_pred             ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee-----c---------ccCCCCCCCceEEE
Confidence            3445678999999998 5666       56789999999988775421 00     0         01234467999999


Q ss_pred             cCC-CCeEEEEECCCeEEEEEccCCceeeeeeee-cc-cccCeEEEEEcCCCCceEEEEecCC---------------Cc
Q 001224          435 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DA-HVGGVNDIAFSHPNKQLCVITCGDD---------------KT  496 (1120)
Q Consensus       435 spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~-h~~~V~~v~~s~d~~~~~l~s~s~d---------------~~  496 (1120)
                      +++ |+++++.. .+.|.+||.+ ++........ .+ ....+.+++++++|.  ++++...+               +.
T Consensus        79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence            999 66555444 4479999998 6533210111 11 224589999999998  55665544               56


Q ss_pred             EEEEECCCCceeEEeeccccCeEEEeec--cCCCceEEEEE-ecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          497 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       497 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      |..||.. ++..... .+......++++  .+++++.++.+ ..++.|.+||.........       ...+.-.+.   
T Consensus       155 l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~-------~~~~~~~~~---  222 (314)
T 1pjx_A          155 IYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-------KKVWGHIPG---  222 (314)
T ss_dssp             EEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-------EEEEEECCC---
T ss_pred             EEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc-------ceEEEECCC---
Confidence            7777765 5544332 233456777775  12555555444 5678999998762111100       000000000   


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEE
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILA  652 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd  652 (1120)
                          +.......++++++|+.+++...++.|.+||..+++.+..+..+.  ..+.+++|+++|+.|++++ .++.|..|+
T Consensus       223 ----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          223 ----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence                000134456777777777777788999999998788777766442  3688999999999555554 567899998


Q ss_pred             ccC
Q 001224          653 TSD  655 (1120)
Q Consensus       653 ~~~  655 (1120)
                      +..
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.34  E-value=2.3e-11  Score=150.50  Aligned_cols=244  Identities=10%  Similarity=-0.011  Sum_probs=153.8

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      ...+..++|||||++|+.+.+.+|    +|++||+.+++.+.. .                   .+...+..++|||| +
T Consensus       162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD-~  220 (741)
T 1yr2_A          162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN-D  220 (741)
T ss_dssp             -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-S
T ss_pred             CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-C
Confidence            346889999999997555554444    599999999986542 0                   01112357899999 9


Q ss_pred             eEEEEECCCe--------------EEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecC-----CCcEEE
Q 001224          440 LFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIKV  499 (1120)
Q Consensus       440 ~las~~~dg~--------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~-----d~~i~v  499 (1120)
                      .|+.++.++.              |.+|++.++... ........|...+..+.|||||+.  |+..+.     ...|++
T Consensus       221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~  298 (741)
T 1yr2_A          221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHV  298 (741)
T ss_dssp             EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEE
T ss_pred             EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEE
Confidence            9999887654              889999877521 112222334446899999999995  444443     348999


Q ss_pred             EECCCC--ceeEEeeccccCeEEEeeccCCCceEEEEEec----CCeEEEEecCCCC-Cceee-eCCCCceeEEEEcCCC
Q 001224          500 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVDY-EAPGRWCTTMAYSADG  571 (1120)
Q Consensus       500 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~s~~g  571 (1120)
                      ||+.++  ++...+..+...+....+   ++|..|+..+.    ++.|.+||+.+.. ....+ ..+...          
T Consensus       299 ~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~----------  365 (741)
T 1yr2_A          299 ARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN----------  365 (741)
T ss_dssp             EEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE----------
T ss_pred             EECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe----------
Confidence            999887  424556555555554432   34456666654    3458999987632 11211 111112          


Q ss_pred             CeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEE----CCC
Q 001224          572 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDN  646 (1120)
Q Consensus       572 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg  646 (1120)
                                 +..+.++ ++..+++...|+..++|.+. ++.....+..+. ...+..++++|+++.++...    ..+
T Consensus       366 -----------l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~  432 (741)
T 1yr2_A          366 -----------LESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPA  432 (741)
T ss_dssp             -----------EEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred             -----------EEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence                       2223333 33456777888887777554 455566655322 23577889999987666432    247


Q ss_pred             cEEEEEccCc
Q 001224          647 GIKILATSDG  656 (1120)
Q Consensus       647 ~i~iwd~~~~  656 (1120)
                      +|++||+.++
T Consensus       433 ~i~~~d~~tg  442 (741)
T 1yr2_A          433 TVLALDPATA  442 (741)
T ss_dssp             EEEEEETTTT
T ss_pred             EEEEEECCCC
Confidence            8999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=3.8e-09  Score=114.74  Aligned_cols=238  Identities=11%  Similarity=0.012  Sum_probs=161.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ....+.+++++++|+ +.++...++.|.+||.. ++....                  .+..+...+.+++++++|++.+
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence            456889999999999 56666678999999988 553321                  0222345789999999999888


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE-EeeccccCeEEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV  521 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~  521 (1120)
                      +...++.|..||.. ++...  ..+......+.++++.++|.  ++++...++.|..||.. ++... .+......+..+
T Consensus        78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            77778899999988 54321  22333446799999999998  67777768899999987 65543 233344567788


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeee--CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  599 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~  599 (1120)
                      ++.  +++.+.++...++.|..||. +.. ...+.  ....                     ....++++++++.+++..
T Consensus       152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~---------------------~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          152 TLG--SDNALWFTENQNNSIGRITN-TGK-LEEYPLPTNAA---------------------APVGITSGNDGALWFVEI  206 (300)
T ss_dssp             EEC--TTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred             EEC--CCCCEEEEecCCCeEEEECC-CCc-EEEeeCCCCCC---------------------CcceEEECCCCCEEEEcc
Confidence            864  45566666666788988987 322 11111  1111                     344555666666666666


Q ss_pred             CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          600 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       600 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                      ..+.|.+||. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus       207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            6778999998 5554332 22222345788999999987776656788888876

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.30  E-value=2.3e-10  Score=125.61  Aligned_cols=245  Identities=8%  Similarity=0.041  Sum_probs=161.1

Q ss_pred             ccEEEEEEcCCCceEEE-------eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC-CCCCCCCccE
Q 001224          758 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC  829 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~-~~~~~~~v~~  829 (1120)
                      ....+++|+++|..+++       ...++.|.+|+...                      ++....... ..++...+.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence            34568899999987776       56678888876532                      221111000 0013356889


Q ss_pred             EEEccC-CCEEEEEeCCcEEEEEcCCCceeee-ecC----CCCCeEEEEEecCCCcEEEEEeCC---------------C
Q 001224          830 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S  888 (1120)
Q Consensus       830 l~~s~d-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g  888 (1120)
                      ++++++ |+++++...+.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 766665556689999988 665433 221    123588999999 78877766554               4


Q ss_pred             cEEEEEeecceeeEeecccccceEEEEEc----cCCCEEE-EEeCCCCEEEEECC-CcccccceeeeccCCCCCCCCCCc
Q 001224          889 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLV-SSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT  962 (1120)
Q Consensus       889 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~~~~~~~~~i~  962 (1120)
                      .|..|+.. ++.. .+..+......++|+    ++++.|. +...++.|.+|+++ .++...........++.  ...+.
T Consensus       154 ~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD  229 (314)
T ss_dssp             EEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred             eEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence            56666654 4433 333344557889999    9997654 44567899999986 33322122222222221  02457


Q ss_pred             EEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE-EcCCcEEEEEcCC
Q 001224          963 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAAN 1032 (1120)
Q Consensus       963 ~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~iwd~~~ 1032 (1120)
                      .++++++|.++++. .++.|.+||..+++.+..+.  .+...+.+++|++||++|+++ ..++.|..|++..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999988875 67899999998777665554  345789999999999965555 4567899999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=8e-10  Score=120.44  Aligned_cols=239  Identities=12%  Similarity=0.061  Sum_probs=155.4

Q ss_pred             eeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       358 ~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      ..+..+.......+|+|+|+.|++++..++.|..|+. +++...                    +..+...+..++++++
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~d   96 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQ   96 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTT
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCC
Confidence            3344466778899999999988999999999999998 444221                    2234567899999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeeccc-ccCeEEEEEcCCCCceEEEE----ecC-------------CCcEEE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKV  499 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~s~-------------d~~i~v  499 (1120)
                      |+++++...++.|.+|+.+ ++.........+. ...+..+++.++|.  +++|    |..             .+.|..
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~  173 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYR  173 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEE
Confidence            9977766666889999986 4422111111121 23577899999998  5665    332             256788


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC------CeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCe
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  573 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~  573 (1120)
                      ||..+++.....  .......++|++  ++..|+.+...      +.|.+|++.... ....                 +
T Consensus       174 ~d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~  231 (305)
T 3dr2_A          174 LPPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------R  231 (305)
T ss_dssp             ECSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------E
T ss_pred             EcCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------e
Confidence            887677654433  344567788754  55666666554      689999886533 1100                 0


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcE
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI  648 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  648 (1120)
                      .+..........++++++|+ |.++..+ .|.+|+. .++.+..+....   .+.+++|+++++.|.+++.++..
T Consensus       232 ~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          232 HFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             EEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEE
T ss_pred             EEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEE
Confidence            00000011223466777777 4444444 5999998 577777776543   37889999999999888876433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.27  E-value=2e-09  Score=121.96  Aligned_cols=255  Identities=10%  Similarity=0.041  Sum_probs=164.9

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      .....|+|+|+|+ |+++...++.|++||..+++....                   ... ..... ++|+|++++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4688999999998 788888889999999988765431                   112 22233 9999999999998


Q ss_pred             ECCC--eEEEEEccCCceeeeeeeecc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE----eeccccC
Q 001224          445 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP  517 (1120)
Q Consensus       445 ~~dg--~v~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~----~~~h~~~  517 (1120)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8766  799999887654332211222 4567889999996553  33366688999999887764332    2222222


Q ss_pred             e--EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          518 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       518 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      -  ..++|++. ++.++++-...+.|+.|+.+..  ...+...... ..   ..+|.  .....-.....++++++|+.+
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg~--~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDGL--REEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCEE--GGGCBCSSEEEEEECTTCCEE
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCCc--ccccEeCCCeEEEEeCCCCEE
Confidence            2  27888653 3466777777889999987642  2222111100 00   00000  000001134567888888877


Q ss_pred             EEEe-CCCeEEEEECCCCceeEEEecCC-------------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          596 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       596 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                      ++-+ .++.|+.|++.++... .+.+..             .......++++++|.++++-..++.|+.+++
T Consensus       338 vad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7777 8899999998777643 333221             1234678999999888888888888888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.26  E-value=5.7e-10  Score=124.61  Aligned_cols=256  Identities=12%  Similarity=0.100  Sum_probs=165.4

Q ss_pred             cCCCeEEEEEeCC----CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE----
Q 001224          374 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----  445 (1120)
Q Consensus       374 pdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~----  445 (1120)
                      |++++++++...+    +.|.+.|..+++.+.+.+.                  + ..+  .+++||||++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence            4666666665544    7999999999998875321                  2 224  799999999998876    


Q ss_pred             ------CCCeEEEEEccCCceeeeeeeec--c---cccCeEEEEEcCCCCceEEEEec--CCCcEEEEECCCCceeEEee
Q 001224          446 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       446 ------~dg~v~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~  512 (1120)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||++  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  46789999999998765432 22  0   1123567899999996  44433  36889999999999998886


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCcee----eeCCCCce-eEEEEcCCCCeEEeccc--------
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWC-TTMAYSADGTRTYQGFR--------  579 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v-~~~~~s~~g~~~~~~~~--------  579 (1120)
                      .-..    ....+... ..+++.+.||.+.+.+..+.+....    +......+ ..+.+.+++..++....        
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            4211    11122222 3555666777777777733322211    11111110 11233444332211100        


Q ss_pred             -------------------------ccceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCCC
Q 001224          580 -------------------------KRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL  624 (1120)
Q Consensus       580 -------------------------~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~  624 (1120)
                                               ......++++|+++++++...          ++.|.++|..+.+.+..+....  
T Consensus       293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--  370 (426)
T 3c75_H          293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--  370 (426)
T ss_dssp             ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred             ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence                                     001112678888887777542          3579999999999999887543  


Q ss_pred             CCcCeEEEcCCCC-EEEEEE-CCCcEEEEEccCcchhhhh
Q 001224          625 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRT  662 (1120)
Q Consensus       625 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~  662 (1120)
                       ....++|+|||+ ++++.. .++.|.++|+.++ +.++.
T Consensus       371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t  408 (426)
T 3c75_H          371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS  408 (426)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred             -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence             378899999999 888888 5899999999988 44444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=1.8e-09  Score=117.17  Aligned_cols=236  Identities=11%  Similarity=0.085  Sum_probs=153.0

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      .-..+..|+|++..|+++...++.|..||..+++...                    + .....+.+++++++|+++++ 
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~-   70 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT-   70 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE-
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE-
Confidence            4456889999877788888889999999998876432                    0 13457999999999996555 


Q ss_pred             ECCCeEEEEEccCCceeeeeeeecc--cccCeEEEEEcCCCCceEEEEe-cC--------CCcEEEEECCCCceeEEeec
Q 001224          445 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       445 ~~dg~v~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~-s~--------d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      . ++.|.+||.++++.. .......  ....++.++++|+|+  ++++. ..        .....||.+.....+..+..
T Consensus        71 ~-~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~  146 (297)
T 3g4e_A           71 I-GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD  146 (297)
T ss_dssp             E-TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred             E-CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence            3 567999999887643 2222211  124588999999998  44443 22        13345665543222333333


Q ss_pred             cccCeEEEeeccCCCceEE-EEEecCCeEEEEecCC-CCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          514 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                      +......++|++  +++.| ++.+.++.|.+|+++. .......        .+...       ..........++++++
T Consensus       147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~-------~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK-------LEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE-------CCGGGCEEEEEEEBTT
T ss_pred             ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE-------CCCCCCCCCeeEECCC
Confidence            444567788865  44555 5556678999998752 1111100        00000       0001123455777778


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND  645 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  645 (1120)
                      |+..++...++.|.+||..+++.+..+....  ..+++++|. |+++.|++.+..
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence            7777777788899999999999888887553  368999998 888887776653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=1.3e-09  Score=123.48  Aligned_cols=248  Identities=8%  Similarity=-0.006  Sum_probs=163.0

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  901 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~  901 (1120)
                      .....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++  .|.+|+...+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            4578899999998766666 68999999988776555443 23334 99999 788888887766  7888887765443


Q ss_pred             Eee----cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeec--cCCCCCCCCCCc-EEEEccC-CcEE
Q 001224          902 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDT-RVQFHQD-QIHF  973 (1120)
Q Consensus       902 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~~~~~~~~~i~-~~~fspd-g~~l  973 (1120)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++...   .+..  ..+...  .... .++|+|+ +.++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEEE
Confidence            333    225567889999995555555777889999999875421   1111  111111  1113 9999996 5544


Q ss_pred             EEE-eCCeEEEEEcCCceeeeccccCC-------------CCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeee
Q 001224          974 LVV-HETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus       974 a~~-~d~~v~i~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~ 1038 (1120)
                      ++. .++.|+.|+....  +..+....             .-.....++|+++|+++++-+ .++.|+.|++.+++....
T Consensus       283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            443 5678999987643  22221100             124588999999999777777 789999999888875533


Q ss_pred             eCCCcc--cCCCC--CCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1039 INPSAY--LPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1039 ~~~~~~--~~~g~--~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      ......  ...|.  ...--.|..++++| ++.++++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence            221000  00010  01113467899999 4788888888888888775

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=1.6e-10  Score=128.19  Aligned_cols=271  Identities=8%  Similarity=-0.015  Sum_probs=174.5

Q ss_pred             ccEEEEEEcCCCceEEEecc--CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          758 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      ..+..++++++|+.+++...  ++.++||.+..      +...      -|.  ...     .....+-..+..++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS-----GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence            46789999999998777532  34366776631      1110      010  000     001125567899999999


Q ss_pred             CCEEEEEe------CCcEEEEEcCCCceeeeecCC------CCCeEEEEEecCCCcEEEEEe---CCCcEEEEEeeccee
Q 001224          836 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV  900 (1120)
Q Consensus       836 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~  900 (1120)
                      ++++++..      ++.|.+||+.+++.+..+...      ...+..++++++++..+++..   .++.|.+||+.+++.
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            98666543      378999999988877665432      235689999984455556555   678999999998887


Q ss_pred             eEeecccccceE-EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001224          901 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  978 (1120)
Q Consensus       901 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d  978 (1120)
                      ...+.+|..... ...++.+|..+.+.+.|+.++.|..                      .+..++|+|||+.|+++ ..
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence            777766533211 1455667888888888888766632                      24679999999988875 33


Q ss_pred             C-eEEEEEcCC---c-----eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224          979 T-QLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus       979 ~-~v~i~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
                      + .+..++...   +     +....+...++......++++++|.++++...++.|.+||..+++......    .+.  
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~--  289 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK--  289 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence            3 454444321   0     001111111234466789999999999988889999999986676543322    111  


Q ss_pred             CCCCccceEEEecCCCCCEEEEEeCCCcEE
Q 001224         1050 SSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1079 (1120)
Q Consensus      1050 ~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~ 1079 (1120)
                         ...|..++|.+ ++.++++.+..+.+.
T Consensus       290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSA  315 (343)
T ss_dssp             ---GSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred             ---eecCCeeEECC-CCcEEEEeCcccccc
Confidence               13466899998 577777776554443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=1.3e-09  Score=118.15  Aligned_cols=229  Identities=11%  Similarity=0.069  Sum_probs=149.8

Q ss_pred             cEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          759 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       759 ~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      -..+..|++++. .+++...++.|..|+..                      ++......     ....+.+++++++|+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~~~~i~~~~dG~   66 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------------TKQVQRVT-----MDAPVSSVALRQSGG   66 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETT----------------------TCCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEe-----CCCceEEEEECCCCC
Confidence            345788888644 45555567888877753                      22221110     345688999999999


Q ss_pred             EEEEEeCCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeCC---------CcEEEEEeecceeeEee
Q 001224          838 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKL  904 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l  904 (1120)
                      +++ +.++.|.+||..+++.......    ....+..++++| +++++++...+         ..-.||.+........+
T Consensus        67 l~v-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~  144 (297)
T 3g4e_A           67 YVA-TIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY  144 (297)
T ss_dssp             EEE-EETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE
T ss_pred             EEE-EECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE
Confidence            554 4577899999987765332221    123478899999 78876654322         33456665532223333


Q ss_pred             cccccceEEEEEccCCCEE-EEEeCCCCEEEEECC--CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224          905 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  980 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~  980 (1120)
                      ..+....+.++|+||++.| ++.+.++.|.+|+++  ++.....+.+.......   ..+..++++++|++.++. ..+.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETTTE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCCCE
Confidence            3344556899999999876 455667889999974  44332222222222111   245789999999877775 5678


Q ss_pred             EEEEEcCCceeeeccccCCCCCCeeEEEEC-CCCcEEEEEEc
Q 001224          981 LAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1021 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~ 1021 (1120)
                      |..||..+++.+..+..  +...+++++|. ||++.|++++.
T Consensus       222 v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            99999999998887763  35689999998 89887776654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=1.6e-10  Score=127.07  Aligned_cols=173  Identities=12%  Similarity=0.120  Sum_probs=134.2

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCc-----------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                      ..+..+++++...++++|+...+.+|++++..           ..... .+.. |+.++|   |+++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999996688889976433           11222 2455 999999   57888888 88999999


Q ss_pred             EeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEE
Q 001224          894 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  973 (1120)
Q Consensus       894 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~l  973 (1120)
                      |+.+.........|...|.++.+.+..  +++++.||.|.+||+..+...     ...       ..|++++|||+| +.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~-----~~~-------~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK-----QLA-------QNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE-----EEE-------ESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc-----ccc-------CCceEEEEcCCc-eE
Confidence            998766556667788888888776543  888999999999999975532     111       268999999999 44


Q ss_pred             EEEeCCeEEEEEcCCcee--eecccc----C---CCCCCeeEEEECCCCcEEEE
Q 001224          974 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus       974 a~~~d~~v~i~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s 1018 (1120)
                      +...||.+++|+...+++  .+.+..    .   +|...|.+|+|.+++.+|++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            446899999999988775  444421    1   36889999999999999886

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=2.9e-10  Score=125.02  Aligned_cols=197  Identities=9%  Similarity=-0.018  Sum_probs=128.6

Q ss_pred             ccEEEEccCCCEEEEEe---CCcEEE--EEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec----
Q 001224          827 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----  897 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----  897 (1120)
                      ...++++|||++++++.   +..+.+  +|..+   +..+.....    ..+.|++.+.+++.+.||.+.+.++.+    
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~  198 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence            44688899999888875   256888  88876   444432111    223453455666677889988888876    


Q ss_pred             -ceeeEe----ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeecc------CCCCCCCCCCcEEEE
Q 001224          898 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQF  966 (1120)
Q Consensus       898 -~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~f  966 (1120)
                       ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+............      .+..+  .....++|
T Consensus       199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~  271 (368)
T 1mda_H          199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAK  271 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEE
T ss_pred             CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEE
Confidence             543321    11112233   3 666676666666 8999999875321111111100      01000  12234789


Q ss_pred             ccCCcEEEEE-e-C--------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE-EEEEE-cCCcEEEEEcCCcc
Q 001224          967 HQDQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLK 1034 (1120)
Q Consensus       967 spdg~~la~~-~-d--------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~-~Dg~v~iwd~~~~~ 1034 (1120)
                      +||++.+.++ . .        +.+.++|+.+.+.+..+...   .....|+|+|||++ +++.. .++.|.|+|+.+++
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            9999988874 3 2        36779999999999888753   36899999999985 45555 48999999999999


Q ss_pred             eeeeeC
Q 001224         1035 LRCRIN 1040 (1120)
Q Consensus      1035 ~~~~~~ 1040 (1120)
                      .+..+.
T Consensus       349 vv~~I~  354 (368)
T 1mda_H          349 DQSSVE  354 (368)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            998877

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.21  E-value=2.6e-05  Score=92.58  Aligned_cols=525  Identities=10%  Similarity=0.038  Sum_probs=276.3

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG  457 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~  457 (1120)
                      |+++  ..+.|+.-++++......                  +....-..+..|+|++++..|..+ ..++.|..+++++
T Consensus         9 Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g   68 (628)
T 4a0p_A            9 LLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG   68 (628)
T ss_dssp             EEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence            4444  457888889876543221                  011123468899999976666654 4578899999886


Q ss_pred             CceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-e
Q 001224          458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-A  536 (1120)
Q Consensus       458 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~  536 (1120)
                      .....   .+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. +|.+.++- +
T Consensus        69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g  143 (628)
T 4a0p_A           69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG  143 (628)
T ss_dssp             CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred             CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence            54221   12222345778999887776 4556667788999997654433333233445677887653 33344433 2


Q ss_pred             cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCcee
Q 001224          537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLL  615 (1120)
Q Consensus       537 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~  615 (1120)
                      ..+.|...+++..... .+.........+                     ++++++..|+.+ ...+.|...|+..... 
T Consensus       144 ~~~~I~r~~~dG~~~~-~l~~~~~~P~Gl---------------------alD~~~~~LY~aD~~~~~I~~~d~dG~~~-  200 (628)
T 4a0p_A          144 GKPKIDRAAMDGSERT-TLVPNVGRANGL---------------------TIDYAKRRLYWTDLDTNLIESSNMLGLNR-  200 (628)
T ss_dssp             SSCEEEEEETTSCSCE-EEECSCSSEEEE---------------------EEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCEEEEEeCCCCceE-EEECCCCCcceE---------------------EEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence            2456766666543322 221222334444                     444443445444 4567888888865443 


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001224          616 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  695 (1120)
Q Consensus       616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1120)
                      ..+...  ......+++.. +.++++-...+.|...|..++.. ...+......             +            
T Consensus       201 ~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~-------------p------------  251 (628)
T 4a0p_A          201 EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDY-------------V------------  251 (628)
T ss_dssp             EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCS-------------C------------
T ss_pred             EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCC-------------c------------
Confidence            233221  22345677754 34444444577888888766622 2222110000             0            


Q ss_pred             ccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEc-CCCceEEE
Q 001224          696 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILA  774 (1120)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~  774 (1120)
                                                        ..|.++.-........|..       ..+....+++. |.+. ..+
T Consensus       252 ----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~~C  289 (628)
T 4a0p_A          252 ----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-FVC  289 (628)
T ss_dssp             ----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-EEE
T ss_pred             ----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-eeE
Confidence                                              0011111110000001100       00111112221 2122 122


Q ss_pred             eccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCC
Q 001224          775 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT  854 (1120)
Q Consensus       775 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~  854 (1120)
                      .+..|...                                        .....+|..   ...+++.+....|+-..+..
T Consensus       290 ~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~  326 (628)
T 4a0p_A          290 GCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVIDE  326 (628)
T ss_dssp             ECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCCT
T ss_pred             EcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEeccc
Confidence            22222110                                        111222322   23566666667777666653


Q ss_pred             Ccee-eeecC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc------cccceEEEEEccCCCEE-EE
Q 001224          855 FKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-VS  925 (1120)
Q Consensus       855 ~~~~-~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~s  925 (1120)
                      .... ..+.. .-..+.+++|.+.+++++.+=...+.|+.+++........+..      ....+.+|++...++.| ++
T Consensus       327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t  406 (628)
T 4a0p_A          327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT  406 (628)
T ss_dssp             TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence            3211 12221 2345889999995555555544567888887654332222322      23467899998876655 46


Q ss_pred             EeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc-CCcEEEE-EeCC--eEEEEEcCCceeeeccccCCCC
Q 001224          926 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRESS 1001 (1120)
Q Consensus       926 ~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~-~~d~--~v~i~d~~~~~~~~~~~~~~h~ 1001 (1120)
                      -+..+.|.+.+++.. ... .... ...     .....+++.| .|.++.+ ....  .|...+++.... ..+.. ..-
T Consensus       407 d~~~~~I~v~~~~G~-~~~-~l~~-~~l-----~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l  476 (628)
T 4a0p_A          407 CEATNVINVTRLDGR-SVG-VVLK-GEQ-----DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGL  476 (628)
T ss_dssp             ETTTTEEEEEETTSC-EEE-EEEE-CTT-----CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSC
T ss_pred             cCCCCEEEEEECCCC-eEE-EEEe-CCC-----CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccC
Confidence            666788999988752 111 1111 111     2468999999 5665555 2333  566666653332 22221 224


Q ss_pred             CCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE
Q 001224         1002 APITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1080 (1120)
Q Consensus      1002 ~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v 1080 (1120)
                      .....|++.++++.|+.+.. .+.|...+++... ...+..      +   ....|.+++...  +.++.+-...+.|..
T Consensus       477 ~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i~~  544 (628)
T 4a0p_A          477 SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMIEK  544 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred             CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeEEE
Confidence            56799999998877776654 4789999986543 333321      0   112355777764  456666666678888


Q ss_pred             EecCCCC
Q 001224         1081 FEPLESE 1087 (1120)
Q Consensus      1081 W~~~~~~ 1087 (1120)
                      .+..+|+
T Consensus       545 ~~k~~G~  551 (628)
T 4a0p_A          545 IDMTGRE  551 (628)
T ss_dssp             EETTSSS
T ss_pred             EECcCCC
Confidence            8877766

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=2.1e-09  Score=131.57  Aligned_cols=245  Identities=13%  Similarity=0.105  Sum_probs=154.4

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCC----CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      |...+..++|||||++|+.+.+..    .+|+|||+++|+.+.. .                 +  +......++|+ ||
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GN  185 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TT
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CC
Confidence            445788899999999755554433    4799999999986542 0                 0  11113568999 99


Q ss_pred             CeEEEEECCC-------------eEEEEEccCCcee-eeeeeecc-cccCeEEEEEcCCCCceEEEEec---CCCcEEEE
Q 001224          439 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW  500 (1120)
Q Consensus       439 ~~las~~~dg-------------~v~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vw  500 (1120)
                      +.|+.++.+.             .|++|++.++..- ........ |...+..+.|+|||+.+ +++.+   .+..|++|
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~  264 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK  264 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence            9999998774             3999999876531 12223334 55568899999999963 33333   23589999


Q ss_pred             ECCCCc-eeEEeeccccCeEEEeeccCCCceEEEEEecC---CeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeE
Q 001224          501 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       501 d~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      |+.++. ....+..+....... +.+.. +.+++....+   +.|..+|+.+...  ...+..+...+.           
T Consensus       265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-----------  331 (693)
T 3iuj_A          265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-----------  331 (693)
T ss_dssp             ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-----------
T ss_pred             ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-----------
Confidence            998764 455666666665554 33332 3455555443   5788888876543  122222222221           


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC----Cc
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG  647 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~  647 (1120)
                                  .++++++.|+.... ++  .|++|++..+ ....+.... ...+..+.+++++..++....+    ++
T Consensus       332 ------------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          332 ------------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT  397 (693)
T ss_dssp             ------------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred             ------------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence                        45555566766554 44  6899998754 444444322 2245567778888877766554    78


Q ss_pred             EEEEEccCc
Q 001224          648 IKILATSDG  656 (1120)
Q Consensus       648 i~iwd~~~~  656 (1120)
                      +..||+.++
T Consensus       398 l~~~d~~~g  406 (693)
T 3iuj_A          398 LYRFEPKSG  406 (693)
T ss_dssp             EEEECTTTC
T ss_pred             EEEEECCCC
Confidence            999988766

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=1.8e-09  Score=119.66  Aligned_cols=248  Identities=13%  Similarity=0.052  Sum_probs=146.3

Q ss_pred             CCceEEEEecCCCeEEEEEe--CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ..+..|+++|+|+ ++++..  .++.+.||.+.+++..   .+.-|.          ....+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            6889999999999 566653  2343666666555432   121111          01235667899999999998777


Q ss_pred             EEEC-----CCeEEEEEccCCceeeeeeeec----ccccCeEEEEEcCCCCceEEEEec---CCCcEEEEECCCCceeEE
Q 001224          443 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       443 s~~~-----dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~s---~d~~i~vwd~~~~~~~~~  510 (1120)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999998855422 221    22345789999987654 456655   678999999998887776


Q ss_pred             eeccccCeE-EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc-----------
Q 001224          511 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----------  578 (1120)
Q Consensus       511 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~-----------  578 (1120)
                      +.+|..... ...+  ..+|..+.+.+.++.++.|..              .+..++++|+|+.++...           
T Consensus       161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             ecCCCcccccccce--eECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            655421100 0000  011222333333333322210              122333333332222110           


Q ss_pred             ---------------------cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          579 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       579 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                                           .......++++++|+.+++...++.|.+||..+++...... ........+++|.+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCc
Confidence                                 00123347788888888888889999999986666433332 21233577899999988


Q ss_pred             EEEEEECC
Q 001224          638 LLAVSTND  645 (1120)
Q Consensus       638 ~l~~~~~d  645 (1120)
                      ++++....
T Consensus       304 l~v~~~~~  311 (343)
T 2qe8_A          304 LYFDCNQL  311 (343)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCcc
Confidence            77776543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=1.1e-08  Score=112.29  Aligned_cols=228  Identities=12%  Similarity=0.020  Sum_probs=146.7

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  445 (1120)
                      -..+.+|+|++..+++++..++.|..||..+++...                    +. ....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence            346789999987788888889999999998876432                    11 23479999999999987765 


Q ss_pred             CCCeEEEEEccCCceeeeeeeecc-c-ccCeEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeEEeeccccC
Q 001224          446 SRHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP  517 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h~~~  517 (1120)
                      .+ .|.+||..+++... ...... + ...+.+++++|+|+  ++++...      .+.|..+|  +++.. .+..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            44 49999998876432 212111 1 24689999999998  4444332      24455555  55543 33333345


Q ss_pred             eEEEeeccCCCceEE-EEEecCCeEEEEecC--CC-CCc--eeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          518 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       518 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                      ...++|++  +++.+ ++.+.++.|.+|+++  ++ ...  ..+.         .+..         .......++++++
T Consensus       181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~  240 (326)
T 2ghs_A          181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE  240 (326)
T ss_dssp             EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred             cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence            67788754  45555 444557899999986  32 110  0000         0000         0112345677777


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND  645 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  645 (1120)
                      |+..++...++.|.+||. +++.+..+....  ..+.+++|+ ++++.|++++..
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence            777777667789999998 677777776443  358899998 888877666554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=1e-08  Score=123.91  Aligned_cols=203  Identities=12%  Similarity=0.125  Sum_probs=135.8

Q ss_pred             EEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224          869 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  920 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  920 (1120)
                      ..++++| ++.+|+.+..++                   .|..+|..+|+.+..++.  |.       ....-+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            4678899 677787777664                   499999999998877653  21       122223344477


Q ss_pred             ---CEEEEEeCCCCEEEEECCCcccccceeeeccC--------C------------CC----CC---CCCCcEEEEccCC
Q 001224          921 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT--------G------------RT----PT---AQSDTRVQFHQDQ  970 (1120)
Q Consensus       921 ---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--------~------------~~----~~---~~~i~~~~fspdg  970 (1120)
                         ..|+.++.+|.+.++|..+|+...........        +            ..    +.   ...-..++|+|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               68999999999999999998764322211000        0            00    00   0001367899998


Q ss_pred             cEEEEE-eC-------------------------------------------CeEEEEEcCCceeeeccccCCCCCCeeE
Q 001224          971 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1006 (1120)
Q Consensus       971 ~~la~~-~d-------------------------------------------~~v~i~d~~~~~~~~~~~~~~h~~~v~~ 1006 (1120)
                      .++++. .+                                           +.|..||+.+++.+-.+..   ..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence            888773 21                                           6799999999998766543   334555


Q ss_pred             EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCE-EEEEeC-----------
Q 001224         1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLS----------- 1074 (1120)
Q Consensus      1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~-l~s~~~----------- 1074 (1120)
                      ..++.++.++++++.||.+++||..+|+.+..+.    .+.+     +...-+.|.+ +|+. +++.+.           
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~  551 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA  551 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence            6677788899999999999999999999999887    3333     2222456665 4554 444332           


Q ss_pred             -----CCcEEEEecCC
Q 001224         1075 -----DGGVHVFEPLE 1085 (1120)
Q Consensus      1075 -----Dg~v~vW~~~~ 1085 (1120)
                           .+.+.+|.+..
T Consensus       552 ~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          552 TERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CSCCCCCEEEEEEETC
T ss_pred             cccCCCCeEEEEeccc
Confidence                 36788888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.15  E-value=1.2e-08  Score=112.14  Aligned_cols=225  Identities=12%  Similarity=-0.016  Sum_probs=144.8

Q ss_pred             EEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          760 ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       760 i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      ..+..|+|++. .+++...++.|..|+..                      ++......     ....+.+++++++|++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~v~~i~~~~dg~l  103 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVHA-----LPFMGSALAKISDSKQ  103 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEE-----CCCcceEEEEeCCCeE
Confidence            45678999754 44555566788877653                      22211110     2346889999999987


Q ss_pred             EEEEeCCcEEEEEcCCCceeeeecC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEeecceeeEeecccc
Q 001224          839 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS  908 (1120)
Q Consensus       839 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~  908 (1120)
                      +++. ++.|.+||..+++.......    ....+..++++| +++++++...      .+.|+.++  +++.. .+..+.
T Consensus       104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            7765 44599999987765432221    123588999999 7877665432      23455555  55533 333344


Q ss_pred             cceEEEEEccCCCEEEEE-eCCCCEEEEECC--Cc-ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEE
Q 001224          909 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI  983 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~-s~Dg~v~iWd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i  983 (1120)
                      .....++|+||++.|+.+ +.++.|.+|+++  ++ .......+.......   ..+..++++++|.+.++. .++.|.+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            457789999999876544 557889999986  54 322222222222111   245789999999877775 5689999


Q ss_pred             EEcCCceeeeccccCCCCCCeeEEEEC-CCCcEEEEEEcC
Q 001224          984 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1022 (1120)
Q Consensus       984 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~D 1022 (1120)
                      ||. +++.+..+.  .+...+++++|+ +|++.|++++..
T Consensus       256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence            998 566666655  335679999998 898877665544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.14  E-value=4.9e-09  Score=126.72  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccc-cceEEEEEccCCCEE
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL  923 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l  923 (1120)
                      |.|..||+.+++.+..+. +...+....+.. ++.++++|+.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            679999999999887765 333344555666 66788889999999999999999998886443 233456777888755


Q ss_pred             EE
Q 001224          924 VS  925 (1120)
Q Consensus       924 ~s  925 (1120)
                      +.
T Consensus       535 v~  536 (677)
T 1kb0_A          535 VS  536 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.14  E-value=7.4e-10  Score=121.84  Aligned_cols=177  Identities=11%  Similarity=0.033  Sum_probs=131.3

Q ss_pred             ceEEEEEcCCCCeEEEEECCCeEEEEEccCCce--------eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      +++.+++++...++++|+.++ +++|+++....        .... ....+.+ |+.|+|  |++  +|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence            799999999999999999986 66699765431        1111 1224566 999999  888  67777 8899999


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      ||+.+.........|...+.++.+.+.    .+++++.||.|.+||+.......    ..                    
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~--------------------  162 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LA--------------------  162 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EE--------------------
T ss_pred             EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----cc--------------------
Confidence            999987777777778888888775432    28888999999999998654321    11                    


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eEEEec----C---CCCCCcCeEEEcCCCCEEEEEE
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~~~~~l~~~~  643 (1120)
                       ..+.+++|+|+|  ++.|..||.+++|+...+..  ..++..    +   .+...|.++.|.+++.++++-.
T Consensus       163 -~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          163 -QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             -ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             -CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence             156667777776  67899999999999987775  555621    1   1345799999999999888643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.12  E-value=2.9e-05  Score=92.09  Aligned_cols=504  Identities=10%  Similarity=0.067  Sum_probs=255.5

Q ss_pred             CCCceEEEEEcCCCCeEEEEE-CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          425 PGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       425 h~~~V~~l~~spdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      .......|+|++.+..|..+. ..+.|..+++++......  .+.........+++.+.+.. ++++-...+.|.+.++.
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence            344678999999777776654 457888898876532111  23333357889999997775 56666778899999976


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEe-cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                      .......+.........+++.+.. |.++++-- ..+.|...+++.................++                
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla----------------  177 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT----------------  177 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEE----------------
T ss_pred             CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEE----------------
Confidence            544333332333445567765432 33334331 234565555543222222222223344444                


Q ss_pred             eeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhh
Q 001224          583 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  661 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  661 (1120)
                           +++++..|+.+ ...+.|...|++...........  ......+++..+ ...++-...+.|...|..++.. ..
T Consensus       178 -----ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~  248 (619)
T 3s94_A          178 -----LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LR  248 (619)
T ss_dssp             -----EETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CE
T ss_pred             -----EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cE
Confidence                 44443344444 45677888888654333222211  123456788665 4444444567888888776632 21


Q ss_pred             hcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCC
Q 001224          662 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  741 (1120)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  741 (1120)
                      .+.....             .|.                                              .+.++.-....
T Consensus       249 ~i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp  269 (619)
T 3s94_A          249 EIHSDIF-------------SPM----------------------------------------------DIHAFSQQRQP  269 (619)
T ss_dssp             ECCSCCC-------------CCS----------------------------------------------EEEECCGGGSC
T ss_pred             EEecCCC-------------CCc----------------------------------------------EEEEEccccCC
Confidence            1111000             000                                              11111100000


Q ss_pred             -CCccceeeccCCccccccEEEEEE-cCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          742 -EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       742 -~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                       ....|.       ...+....+++ +|.....-+.+..|..                                +     
T Consensus       270 ~~~n~C~-------~~ng~Cs~lCl~~~~~~~~~C~C~~g~~--------------------------------l-----  305 (619)
T 3s94_A          270 NATNPCG-------IDNGGCSHLCLMSPVKPFYQCACPTGVK--------------------------------L-----  305 (619)
T ss_dssp             CCCCTTT-------TTGGGCSSEEEECSSTTSEEEECCTTCC--------------------------------B-----
T ss_pred             Ccccccc-------CCCCcccceEECCCCCCCceEeCCchhe--------------------------------e-----
Confidence             000000       00001111111 1211111122222110                                0     


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceee-eec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                         .....+|..  ....+|+.+..+.|+..++....... .+. ..-..+.+++|++.+++++++-...+.|+.+++..
T Consensus       306 ---~~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g  380 (619)
T 3s94_A          306 ---LENGKTCKD--GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG  380 (619)
T ss_dssp             ---CTTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ---cccCcccCC--CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC
Confidence               001111111  12346666667788888887543221 121 12345789999985565555555678898888765


Q ss_pred             ceeeEeecccccceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV  975 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~  975 (1120)
                      ......+........++++...+. +.++-+..+.|.+.+++....   ..+....     ......+++.|. |.+..+
T Consensus       381 ~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~---~~l~~~~-----l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR---KILISED-----LEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTT-----CCSEEEEEEETTTTEEEEE
T ss_pred             CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE---EEEEECC-----CCCeeeEEEEcCCCcEEEe
Confidence            433333333335677899986544 455555678899998876422   1121111     124689999997 544444


Q ss_pred             E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeeeeCCCcccCCCCCCC
Q 001224          976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSS 1052 (1120)
Q Consensus       976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~ 1052 (1120)
                      -  ....|...+++.... ..+. ...-.....|+++++++.|+.+.. .+.|..++++.......+...  +       
T Consensus       453 D~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l-------  521 (619)
T 3s94_A          453 DWGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I-------  521 (619)
T ss_dssp             ECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--C-------
T ss_pred             cCCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--C-------
Confidence            2  235677777654332 2222 123557889999998777776654 467988998654433222200  0       


Q ss_pred             CccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1053 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1053 ~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                       ..|.+++...  +.+.++-...+.|..-+..+++
T Consensus       522 -~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          522 -PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             -CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred             -CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence             1233566553  3445555556777777777765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.09  E-value=8e-09  Score=112.47  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=149.5

Q ss_pred             ccEEEEEEcCCCc-eEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCC
Q 001224          758 TKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  836 (1120)
Q Consensus       758 ~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~  836 (1120)
                      ....+..|+++|+ .+++...++.|..|+..                       +....  +..  +...+..++++++|
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~dG   97 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQQ   97 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTTS
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCCC
Confidence            4456789999998 45555667888877641                       11110  000  34567899999999


Q ss_pred             CEEEEEe-CCcEEEEEcCCCceeeeec---CC-CCCeEEEEEecCCCcEEEE----EeC-------------CCcEEEEE
Q 001224          837 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN  894 (1120)
Q Consensus       837 ~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd  894 (1120)
                      +++++.. ++.|.+|+.. ++......   +. ...+..++++| +|+++++    |..             .+.|+.||
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            9776655 5789999986 54322211   11 13467899999 8888876    332             24677777


Q ss_pred             eecceeeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                      ..+++.....  .......++|+||++.|+.+...      +.|.+|++..+............     ......+++++
T Consensus       176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~  248 (305)
T 3dr2_A          176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR  248 (305)
T ss_dssp             SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred             CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence            6666644333  44567889999999988777665      68999998764421111221111     12456799999


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEE
Q 001224          969 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1026 (1120)
Q Consensus       969 dg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1026 (1120)
                      +|++.++. .+.|.+|+. .++.+..+...   ..+.+++|+++++.|+.++.++..+
T Consensus       249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence            99955555 456999998 46666665532   2589999999999888887765433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=9.3e-09  Score=124.56  Aligned_cols=78  Identities=13%  Similarity=0.053  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCCEE
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL  923 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l  923 (1120)
                      |.|..||+.+++.+..+..+.. +..-.++. .+.++++|+.||.|+.||..+|+.+..++...+. ..-+.|+.||+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            6799999999998877764432 33335566 6678889999999999999999999888754333 2457778888754


Q ss_pred             E
Q 001224          924 V  924 (1120)
Q Consensus       924 ~  924 (1120)
                      +
T Consensus       533 v  533 (689)
T 1yiq_A          533 V  533 (689)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.09  E-value=6.9e-08  Score=108.70  Aligned_cols=158  Identities=8%  Similarity=0.048  Sum_probs=99.7

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeeccc-------ccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      ++..|.+++.++.|..+|.++|+.+... .+...       ...+.+.... ++.  .++.++.++.|..+|..+|+.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence            4678888888999999999999866432 22111       2233322222 334  37778889999999999999987


Q ss_pred             EeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc
Q 001224          510 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  589 (1120)
Q Consensus       510 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~  589 (1120)
                      ..............  . + ..++.++.++.|..+|..+++............. .  ....             .....
T Consensus       128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-~--~~~~-------------~~~~~  187 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-L--RGES-------------APTTA  187 (376)
T ss_dssp             EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-------------CCEEE
T ss_pred             EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-e--cCCC-------------CcEEE
Confidence            77644322111121  1 2 3678888899999999988877766554321110 0  0000             00011


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 001224          590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       590 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                        +..++.++.++.|..+|..+++.+.....
T Consensus       188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence              24577888899999999999988877653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.08  E-value=5.4e-09  Score=127.86  Aligned_cols=242  Identities=11%  Similarity=0.084  Sum_probs=157.1

Q ss_pred             ccccEEEEEEcCCCceEEEecc-----CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224          756 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  830 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l  830 (1120)
                      +...+..++|||||++++.+..     ...|++||+                      .+|+.+...+    .......+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~  180 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI  180 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence            4557889999999998875432     245666655                      4554333211    11113568


Q ss_pred             EEccCCCEEEEEe-CC-------------cEEEEEcCCCce----eeeecC-CCCCeEEEEEecCCCcEEEEEeC----C
Q 001224          831 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D  887 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-dg-------------~i~vwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~lasg~~----d  887 (1120)
                      +|+ ||+.|+.++ +.             .|++|++.+...    +..... |......+.|+| |+++|+....    +
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG  258 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence            899 999998887 53             399999987643    222232 344578899999 8887765442    2


Q ss_pred             CcEEEEEeecce-eeEeecccccceEEEEEccCCCEEE-EEeCC---CCEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224          888 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLV-SSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  962 (1120)
Q Consensus       888 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~  962 (1120)
                      ..|+++|+.++. ....+..+....... |+++|..|+ +...|   +.|.+|++.++.......+..   +..   .+.
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~~---~~~  331 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ERQ---QVL  331 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CCS---SCE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CCC---CEE
Confidence            489999987753 455666676666655 666766655 44443   568899998865422222221   211   233


Q ss_pred             EEEEccCCcEEEEE--eCC--eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC----CcEEEEEcCCcc
Q 001224          963 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1034 (1120)
Q Consensus       963 ~~~fspdg~~la~~--~d~--~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~iwd~~~~~ 1034 (1120)
                        .|++++++|+..  .++  .|++|++..+.. ..+.. .+.+.+..+.+++|++.|+....+    ++|+.||+.+++
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              899999988873  444  689999885543 33332 234567888889998877766555    889999998886


Q ss_pred             ee
Q 001224         1035 LR 1036 (1120)
Q Consensus      1035 ~~ 1036 (1120)
                      ..
T Consensus       408 ~~  409 (693)
T 3iuj_A          408 IS  409 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.07  E-value=1.6e-08  Score=122.46  Aligned_cols=191  Identities=16%  Similarity=0.160  Sum_probs=125.6

Q ss_pred             EEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224          869 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  920 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  920 (1120)
                      ..++++| +..+|++++.++.                   |..+|..+|+.+..++.  |.       .++.......+|
T Consensus       238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            3678999 6778888887764                   99999999998877654  22       122222223366


Q ss_pred             C---EEEEEeCCCCEEEEECCCcccccceeeec------------------------cCCC----CC---CCCCCcEEEE
Q 001224          921 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR----TP---TAQSDTRVQF  966 (1120)
Q Consensus       921 ~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~------------------------~~~~----~~---~~~~i~~~~f  966 (1120)
                      +   .|+.++.+|.++++|..+|+.........                        ..+.    .+   ....-..++|
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            5   78899999999999999987642111100                        0000    00   0001134789


Q ss_pred             ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceeeeccccCCC
Q 001224          967 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus       967 spdg~~la~~-~---------------------------------------------d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
                      +|+..++++. .                                             ++.|..||+.+++.+-....   
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---  473 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---  473 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---
Confidence            9988877763 1                                             36799999999998766543   


Q ss_pred             CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe
Q 001224         1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1073 (1120)
Q Consensus      1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~ 1073 (1120)
                      ..++..-.++..+.++++|+.||.++.||..+|+.+.+++    .+.+     +...-+.|.. ||+ ++++.+
T Consensus       474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~  537 (689)
T 1yiq_A          474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA  537 (689)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred             CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence            2233334666788899999999999999999999998877    3433     2222356666 455 455443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.03  E-value=9.2e-09  Score=113.02  Aligned_cols=253  Identities=11%  Similarity=-0.022  Sum_probs=151.5

Q ss_pred             eEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE--------
Q 001224          378 TLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY--------  445 (1120)
Q Consensus       378 ~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--------  445 (1120)
                      +++++...++    +|.+.|..+++.+.+..                  .+. .+  .+++||||+++.++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence            3566665555    88899999999887522                  223 24  799999999999986        


Q ss_pred             --CCCeEEEEEccCCceeeeeeeecc-c----ccCeEEEEEcCCCCceEEEEecCCCcEEE--EECCCCceeEEeecccc
Q 001224          446 --SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEGHEA  516 (1120)
Q Consensus       446 --~dg~v~iwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~d~~~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~h~~  516 (1120)
                        .++.|.+||..+++.+..+. +.+ .    ......++|+|||+++|++..+.+..|.+  +|+.+   +.++..- +
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~  166 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S  166 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C
Confidence              36889999999998776432 220 0    12456899999999633322233567888  99877   4444311 1


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCC-----CCCcee----eeCCC----------------CceeEEEEcCCC
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRVD----YEAPG----------------RWCTTMAYSADG  571 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~----~~~~~----------------~~v~~~~~s~~g  571 (1120)
                      .   ..+.+... ..+++.+.||.+.+.|+.+     ++....    +....                +.+..+......
T Consensus       167 ~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~  242 (368)
T 1mda_H          167 C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG  242 (368)
T ss_dssp             C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSC
T ss_pred             c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCc
Confidence            1   11122222 2344555677776677665     111100    00000                111111111000


Q ss_pred             CeEEe------------cccccceeEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeEEEecCCCCCCcCeE
Q 001224          572 TRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPASPRI  630 (1120)
Q Consensus       572 ~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  630 (1120)
                      ..+..            +........+.++|++++++.+..         ++.+.++|+.+++.+..+....   ....+
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi  319 (368)
T 1mda_H          243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAI  319 (368)
T ss_dssp             CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEE
T ss_pred             ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceE
Confidence            00000            000011122678999888887543         2356699999999888886543   37889


Q ss_pred             EEcCCCC-EEEEEE-CCCcEEEEEccCcchhhhhcc
Q 001224          631 RFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       631 ~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                      +|+|||+ .+++.. .++.|.++|+.++ +.++.+.
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~  354 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence            9999998 455566 5899999999988 5555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.01  E-value=1.2e-08  Score=112.60  Aligned_cols=176  Identities=14%  Similarity=0.146  Sum_probs=106.5

Q ss_pred             EEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       433 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      .+..+| .|..++.++.|..|| .+++.+.   ....+...+.++...++|.   +..++.+  |..+|. +++.+..+.
T Consensus        26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             EECTTS-CEECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred             eEccCC-eEEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEEE
Confidence            343444 456667788899999 7777543   2333444567788877776   5555555  888885 666654443


Q ss_pred             ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ..........+.   + ..+..++.++.|..+|.. +............+.++...+++                     
T Consensus        95 ~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g---------------------  148 (330)
T 3hxj_A           95 TKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG---------------------  148 (330)
T ss_dssp             C-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS---------------------
T ss_pred             CCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC---------------------
Confidence            322222222322   2 357778888999999887 55544444333333333333333                     


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                      . +..++.++.|..+|.. ++.+..+....  ..+.++.+.+++.+++..   +.+..+|
T Consensus       149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d  201 (330)
T 3hxj_A          149 T-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN  201 (330)
T ss_dssp             C-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred             E-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence            3 6777888999999998 77776665432  246667777777655433   6677666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.01  E-value=8.8e-08  Score=105.05  Aligned_cols=192  Identities=12%  Similarity=0.125  Sum_probs=131.2

Q ss_pred             ccEEEEccCCCEEEEEe-C------CcEEEEEcCCCceeeeecCCCCC---eEEEEEecCCCcEEEEEe-----------
Q 001224          827 VPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPPA---ATFLAFHPQDNNIIAIGM-----------  885 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s-d------g~i~vwd~~~~~~~~~~~~~~~~---i~~l~~sp~d~~~lasg~-----------  885 (1120)
                      ...+.++|+| .++++. +      |.|.++|..+++.+.++......   -..+-|+| +++.+++..           
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccccccc
Confidence            4567888999 555543 4      67999999999999888633222   34578899 888777764           


Q ss_pred             --------CCCcEEEEEeecceeeEeeccc--ccceEEEEE--ccCCCEEEEEe------CCCCEEEEECCCccccccee
Q 001224          886 --------DDSSIQIYNVRVDEVKSKLKGH--SKRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNRF  947 (1120)
Q Consensus       886 --------~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s------~Dg~v~iWd~~~~~~~~~~~  947 (1120)
                              .+.+|.+||+.+++.+.++..-  ......+.|  +|+++++..++      .+++|.+|..+.++......
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence                    3679999999998888877642  123345555  99999887776      45688887766543322222


Q ss_pred             eeccCCC----CC--------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC---CceeeeccccCCC----------
Q 001224          948 LQIPTGR----TP--------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES---------- 1000 (1120)
Q Consensus       948 ~~~~~~~----~~--------~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~---~~~~~~~~~~~~h---------- 1000 (1120)
                      +......    .+        .......+.+|+||++|.++  ..+.|.+||+.   +.+.+..+...+.          
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            2111100    00        01356899999999999996  56799999985   2355555544321          


Q ss_pred             --CCCeeEEEECCCCcEEEEEE
Q 001224         1001 --SAPITHATFSCDSQLVYACF 1020 (1120)
Q Consensus      1001 --~~~v~~l~~s~dg~~l~s~~ 1020 (1120)
                        .+....+++||||++|+++.
T Consensus       378 ~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEc
Confidence              11368899999999999998

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.00  E-value=6.9e-05  Score=88.93  Aligned_cols=197  Identities=9%  Similarity=0.012  Sum_probs=119.1

Q ss_pred             CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  902 (1120)
                      ..+.+++|.+.+..|..+.  .+.|+.+++........+.........+++...++++.++-...+.|.+.++... ...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~  427 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRK  427 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEE
Confidence            4467899998777777665  5789999987544333333334567789998745666666666788999887644 333


Q ss_pred             ee-cccccceEEEEEccCCCEEEEEeC--CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001224          903 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  977 (1120)
Q Consensus       903 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~  977 (1120)
                      .+ ...-....+|++.|....|..+..  ...|...+++....   ..+.  ...   ......+++++++..|..+  .
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~---~~l~--~~~---l~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR---VVLV--NTS---LGWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC---EEEE--CSS---CSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc---EEEE--eCC---CCCCeeeEEcccCCEEEEEECC
Confidence            33 333456789999997555554443  35566666665321   1111  111   1245789999977777665  5


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcc
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLK 1034 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~ 1034 (1120)
                      .+.|..+++..... +.+.. .......+|++..+  +|+.+. ..+.|...|..++.
T Consensus       500 ~~~I~~~~~dG~~~-~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          500 TDKIEVMNTDGTGR-RVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             TTEEEEEESSSCCC-EEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred             CCEEEEEecCCCce-EEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence            56888898865433 22211 11233445666433  555443 44667777877773

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.98  E-value=2.8e-07  Score=103.68  Aligned_cols=233  Identities=9%  Similarity=0.079  Sum_probs=136.2

Q ss_pred             EEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCc
Q 001224          380 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  459 (1120)
Q Consensus       380 la~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~  459 (1120)
                      +.+++.++.|..+|.++|+.+-+..+...     . .    ........+.+ ....++..+.+++.++.|..+|.++|+
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-----~-~----~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAEK-----D-G----WFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCccc-----c-c----cccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            77778889999999999997754322100     0 0    00000112222 222356778888999999999999998


Q ss_pred             eeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe-----EEEeeccCCCceEEEE
Q 001224          460 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS  534 (1120)
Q Consensus       460 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s  534 (1120)
                      .+... .+.+  ......... ++   .++.++.++.|..+|..+|+.+..+.......     .....  . + ..++.
T Consensus       125 ~~W~~-~~~~--~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~-~-~~v~~  193 (376)
T 3q7m_A          125 VAWQT-KVAG--EALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A-F-GAAVV  193 (376)
T ss_dssp             EEEEE-ECSS--CCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E-T-TEEEE
T ss_pred             EEEEE-eCCC--ceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E-C-CEEEE
Confidence            66422 2221  111111222 33   37778889999999999999988776432211     11111  1 2 36777


Q ss_pred             EecCCeEEEEecCCCCCceeeeCCCCc----eeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001224          535 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  610 (1120)
Q Consensus       535 ~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  610 (1120)
                      ++.++.|..+|..+++...........    +..+. .....         +    .+  .+..++.++.++.+..+|..
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence            888999999999887776655432110    00000 00000         0    00  12457777788889999998


Q ss_pred             CCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          611 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       611 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.+......    ....+..  ++..+++++.++.+..+|..++
T Consensus       258 tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          258 SGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             TCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             CCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            88877665522    1222332  4566777777777777777665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.93  E-value=0.00033  Score=83.12  Aligned_cols=505  Identities=7%  Similarity=-0.077  Sum_probs=261.9

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      -..+.+|+|++.+..++.+-..++.|..+++.......                   +..........+++.+.++.|..
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~   96 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW   96 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence            35788999999888777777778999999987543221                   11112235678999886665554


Q ss_pred             E-ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224          444 A-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       444 ~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  522 (1120)
                      + ...+.|.+.++++.....   .+...-.....|++.|....+|+.--+..+.|...++..... ..+.........++
T Consensus        97 tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~Gla  172 (628)
T 4a0p_A           97 ADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLT  172 (628)
T ss_dssp             EETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEE
T ss_pred             EECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEE
Confidence            4 456789999988654221   122334567899999976643333223456788888764443 33333445567788


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      +.+.. +.+.++-...+.|...|++.... ..+........                     .+++.. +..+++-...+
T Consensus       173 lD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~---------------------glav~~-~~ly~tD~~~~  228 (628)
T 4a0p_A          173 IDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPF---------------------GLTQYQ-DYIYWTDWSRR  228 (628)
T ss_dssp             EETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEE---------------------EEEEET-TEEEEEETTTT
T ss_pred             Ecccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCce---------------------EEEEEC-CEEEEecCCCC
Confidence            75533 23444445567888888865332 21211111122                     233332 22344444578


Q ss_pred             eEEEEECCCCceeEEEecCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCc
Q 001224          603 SIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  681 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1120)
                      .|...|..+++....+.....  ....+.. ++..+.   +            .. .+... .+.        .... ++
T Consensus       229 ~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~------------~n-~C~~~-ng~--------C~~~-C~  280 (628)
T 4a0p_A          229 SIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G------------WN-ECASS-NGH--------CSHL-CL  280 (628)
T ss_dssp             EEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C------------CC-TTTTT-GGG--------CSSE-EE
T ss_pred             EEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c------------ce-EeccC-CCC--------cchh-hh
Confidence            888888877776655542211  2223322 211100   0            00 01000 000        0000 00


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEE
Q 001224          682 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  761 (1120)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  761 (1120)
                      .                                  .+.+.+-. .+..|.....|-      ..                
T Consensus       281 ~----------------------------------~~~~~~~C-~C~~g~~l~~d~------~~----------------  303 (628)
T 4a0p_A          281 A----------------------------------VPVGGFVC-GCPAHYSLNADN------RT----------------  303 (628)
T ss_dssp             E----------------------------------ETTTEEEE-ECSTTCEECTTS------SC----------------
T ss_pred             c----------------------------------CCCCCeeE-EcCCCcEecccC------Cc----------------
Confidence            0                                  00000000 011110000000      00                


Q ss_pred             EEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE
Q 001224          762 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  841 (1120)
Q Consensus       762 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~  841 (1120)
                      |.  .+ ...++.+. ...|+-..+...                    ......  +.. ..-..+.+++|.+.+..|..
T Consensus       304 C~--~~-~~~Ll~s~-~~~i~~i~l~~~--------------------~~~~~~--l~~-~~~~~~~~ld~d~~~~~iy~  356 (628)
T 4a0p_A          304 CS--AP-TTFLLFSQ-KSAINRMVIDEQ--------------------QSPDII--LPI-HSLRNVRAIDYDPLDKQLYW  356 (628)
T ss_dssp             EE--CC-SSEEEEEE-TTEEEEECCCTT--------------------CCCCEE--CCC-TTCSCEEEEEEETTTTEEEE
T ss_pred             Cc--cc-cceeeeec-cceEEEEecccc--------------------cCceEE--EEe-hhcCCceEEEEecCCCeEEE
Confidence            00  01 12233322 223332222100                    000000  000 02345778999988777777


Q ss_pred             Ee--CCcEEEEEcCCCceeeeecC------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee-cccccceE
Q 001224          842 AS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRIT  912 (1120)
Q Consensus       842 ~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~  912 (1120)
                      +.  .+.|+.++.........+..      ....+..+|+....+++..+-+..+.|.+.++. |+....+ ........
T Consensus       357 sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr  435 (628)
T 4a0p_A          357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR  435 (628)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred             EecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence            76  57788888764333233322      234688999998445566666677889998875 4444443 33456688


Q ss_pred             EEEEccC-CCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001224          913 GLAFSHA-LNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT  987 (1120)
Q Consensus       913 ~l~~s~d-~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~  987 (1120)
                      +|++.|. |.++.+-....  .|...+++....   ..+.....     .....+++++++..|..+  ..+.|..+++.
T Consensus       436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~---~~l~~~~l-----~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d  507 (628)
T 4a0p_A          436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTER---EVLFFSGL-----SKPIALALDSRLGKLFWADSDLRRIESSDLS  507 (628)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEETTSCSC---EEEECSSC-----SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc---EEEEeccC-----CCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            9999995 44444433222  455555654221   11111111     245889999987777765  45789999985


Q ss_pred             CceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeee
Q 001224          988 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       988 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~ 1039 (1120)
                      ... ...+.. .......+|++.. +.++.+=...+.|...|..+|+....+
T Consensus       508 G~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          508 GAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             SCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            433 333321 2244567888754 444444445577888888877655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.93  E-value=3.5e-08  Score=108.82  Aligned_cols=217  Identities=13%  Similarity=0.092  Sum_probs=132.0

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      ..+..+|.  +..|+.++.|..|| .+++.+...                   ..+...+.++...++|.+.+ ++.+  
T Consensus        25 ~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~--   79 (330)
T 3hxj_A           25 PILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK--   79 (330)
T ss_dssp             CEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE--
T ss_pred             ceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc--
Confidence            34555665  66777889999999 888765421                   11233467777777776444 4434  


Q ss_pred             EEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCc
Q 001224          450 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI  529 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  529 (1120)
                      |..+|. +++.+..   +...........+. ++.   +..++.++.|..+|.. ++.......+...+.++..  ..++
T Consensus        80 l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~~---l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~g  148 (330)
T 3hxj_A           80 VYAINP-DGTEKWR---FDTKKAIVSDFTIF-EDI---LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SEDG  148 (330)
T ss_dssp             EEEECC-CGGGGGG---SCC-----CCEEEE-TTE---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTTS
T ss_pred             EEEECC-CCcEEEE---EECCCCcccCceEE-CCE---EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCCC
Confidence            888886 5543331   22222222333333 443   7778888999999988 8877776655554555544  3343


Q ss_pred             eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001224          530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  609 (1120)
Q Consensus       530 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  609 (1120)
                       .++.++.++.|..+|.. +.....+......+.++...++|                     . +..++  +.|..+| 
T Consensus       149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g---------------------~-l~v~t--~~l~~~d-  201 (330)
T 3hxj_A          149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG---------------------T-IYFGS--DKVYAIN-  201 (330)
T ss_dssp             -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC---------------------C-EEEES--SSEEEEC-
T ss_pred             -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC---------------------E-EEEEe--CEEEEEC-
Confidence             46667788999999987 55554444433333444443333                     3 55555  8899999 


Q ss_pred             CCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001224          610 DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  652 (1120)
Q Consensus       610 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  652 (1120)
                      .+++.+.......  ..+.++...++|.+ .+++.++.+..++
T Consensus       202 ~~g~~~~~~~~~~--~~~~~~~~~~~g~l-~v~t~~~gl~~~~  241 (330)
T 3hxj_A          202 PDGTEKWNFYAGY--WTVTRPAISEDGTI-YVTSLDGHLYAIN  241 (330)
T ss_dssp             TTSCEEEEECCSS--CCCSCCEECTTSCE-EEEETTTEEEEEC
T ss_pred             CCCcEEEEEccCC--cceeceEECCCCeE-EEEcCCCeEEEEC
Confidence            7777776665432  35778888888754 4456666777665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.92  E-value=1.2e-07  Score=107.89  Aligned_cols=242  Identities=12%  Similarity=0.071  Sum_probs=162.9

Q ss_pred             EEEEcc-----CCCEEEEEe--CCcEEEEEcCCCceeeeecC-CCCCeEEEEE-e-cCCCcEEEEEe-------------
Q 001224          829 CFALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAF-H-PQDNNIIAIGM-------------  885 (1120)
Q Consensus       829 ~l~~s~-----d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~-s-p~d~~~lasg~-------------  885 (1120)
                      ..++|.     ||+++.+..  ++.|.+.|+.+.++...+.- ....+..+++ + | +++++++++             
T Consensus        89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A           89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSST
T ss_pred             ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCccc
Confidence            356665     999999877  56799999999998874432 2345888888 4 8 788888774             


Q ss_pred             -----CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCC------------------------------
Q 001224          886 -----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------  930 (1120)
Q Consensus       886 -----~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------------  930 (1120)
                           .++.|.+.|..+.+...++.--. .-..++++|||+++++.+.+.                              
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence                 34579999999988887765322 346788999999999888553                              


Q ss_pred             --------CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----------
Q 001224          931 --------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----------  990 (1120)
Q Consensus       931 --------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~----------  990 (1120)
                              .|.|.|..+.+... .......+     .....+.++|||++++++  .+..|.++|+.+.+          
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             CCCeeEECcEEEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                    35566665521100 01111112     245789999999999985  67899999999763          


Q ss_pred             --eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCC----------cceeeeeCCCcccCCCCCCCCccceE
Q 001224          991 --CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1058 (1120)
Q Consensus       991 --~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~----------~~~~~~~~~~~~~~~g~~~~~v~~~~ 1058 (1120)
                        .......   ......++|++||...++...|+.|.+||+++          .+.+.++.. .+.| ||.   -..+.
T Consensus       321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp-Gh~---~~~~g  392 (595)
T 1fwx_A          321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP-GHL---KTVMG  392 (595)
T ss_dssp             GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE-EEE---EETTT
T ss_pred             cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc-ccc---eeccc
Confidence              2333322   45689999999994444566799999999987          456666652 1222 110   01123


Q ss_pred             EEecCCCCCEEEEEeC---CCc----------EEEEecCCCC
Q 001224         1059 IAAHPQEPNEFALGLS---DGG----------VHVFEPLESE 1087 (1120)
Q Consensus      1059 i~~~p~d~~~l~s~~~---Dg~----------v~vW~~~~~~ 1087 (1120)
                      +..+| ||++|++...   |+-          -.++|++.++
T Consensus       393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            45677 7899888754   332          2789997666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.91  E-value=2.6e-07  Score=101.40  Aligned_cols=248  Identities=14%  Similarity=0.184  Sum_probs=152.2

Q ss_pred             EEe--cCCCeEEEEEeCCCcEEEEecCCC----ceeEeeceeeeccCCCCcccccccccCCC-CceEEEEEcCCCCeEEE
Q 001224          371 DFH--PVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       371 ~~s--pdg~~lla~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las  443 (1120)
                      .++  +++++|++.|..+++|.|.|+.+.    +....  +   +        ...+..... ..-..+..+||| .+++
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--i---e--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs  153 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--I---E--------PEEVKKVSGYSRLHTVHCGPDA-IYIS  153 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--E---C--------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee--e---c--------hhhcccccCCCcccceeECCCe-EEEE
Confidence            347  899999999999999999999754    22211  1   0        000110111 134567888999 6666


Q ss_pred             EECC------CeEEEEEccCCceeeeeeeecccc-cCeEEEEEcCCCCceEEEEec-------------------CCCcE
Q 001224          444 AYSR------HIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-------------------DDKTI  497 (1120)
Q Consensus       444 ~~~d------g~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~s-------------------~d~~i  497 (1120)
                      +..+      +.|.+.|.++++.+.... ..+.. .--..+.|+|+++  .+++..                   .+.+|
T Consensus       154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V  230 (462)
T 2ece_A          154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI  230 (462)
T ss_dssp             EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred             cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence            5544      789999999988765321 12222 2244688899999  566663                   47899


Q ss_pred             EEEECCCCceeEEeecc--ccCeEEEeeccCCCceEEEEEe------cCCeEEEEecCCCCCceeeeCCCCceeEEEEcC
Q 001224          498 KVWDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  569 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  569 (1120)
                      .+||+.+++.+.++..-  ......+.|..++++++++.++      .+++|.+|..+. +. ...      ...+.+.+
T Consensus       231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~-~~~------~~vIdi~~  302 (462)
T 2ece_A          231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GK-WNA------EKVIEIPA  302 (462)
T ss_dssp             EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TE-EEE------EEEEEECC
T ss_pred             EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-Cc-eeE------EEEEeCCC
Confidence            99999999888887642  1233455665567777777766      466888877653 11 100      00111110


Q ss_pred             CCC-eEE----ecc--cccceeEEEEcCCCCEEEEEe-CCCeEEEEECCC---CceeEEEecCCC------------CCC
Q 001224          570 DGT-RTY----QGF--RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS---VQLLTSIDADGG------------LPA  626 (1120)
Q Consensus       570 ~g~-~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~------------~~~  626 (1120)
                      ... ..+    .+.  .......+.+++|+++|.++. ..+.|.+||+..   .+.+..+...+.            ...
T Consensus       303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg  382 (462)
T 2ece_A          303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA  382 (462)
T ss_dssp             EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred             ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence            000 000    000  012355677888888887765 478999999853   345555543211            012


Q ss_pred             cCeEEEcCCCCEEEEEE
Q 001224          627 SPRIRFNKDGCLLAVST  643 (1120)
Q Consensus       627 v~~~~~s~~~~~l~~~~  643 (1120)
                      -..++++|||++|+++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            57899999999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=6.6e-07  Score=101.91  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             CccEEEEccCCCEEEEEe--CCcEEEEEcCCCc------------eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001224          826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  891 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~  891 (1120)
                      ...++.++|||+++++++  +++|.++|+.+.+            ...... -......++|+| +|...++...|++|.
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~  355 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVV  355 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEE
Confidence            456799999999999887  6889999998653            223332 334689999999 776666778899999


Q ss_pred             EEEeec----------ceeeEeecccccce-----EEEEEccCCCEEEEEeC---CCC----------EEEEECCCccc
Q 001224          892 IYNVRV----------DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQ----------LCVWSSDGWEK  942 (1120)
Q Consensus       892 vwd~~~----------~~~~~~l~~h~~~V-----~~l~~s~d~~~l~s~s~---Dg~----------v~iWd~~~~~~  942 (1120)
                      +||+.+          .+.+.++..|..+-     .++.++|||++|+++..   |+-          -.++|+.+++.
T Consensus       356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            999987          45677776654431     23456899999998754   442          17899966543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=124.56  Aligned_cols=190  Identities=13%  Similarity=0.108  Sum_probs=108.3

Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCC
Q 001224          877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      ++..|++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.|+.|+.||..+++.............. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            456888899999999999999999888876  56666666778888888899999999999887653221111000000 


Q ss_pred             CCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224          957 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                           ...++..++ .+++ +.++.++.||..+|+.+..+..  +.    ...++|++..|++++.|+.|+.||..+|+.
T Consensus        85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             -----TCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence                 011112334 4444 6789999999999998766542  22    245677889999999999999999999998


Q ss_pred             eeeeCCCcccCCCCCCCCccceEEEecCC--CCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 001224         1036 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1036 ~~~~~~~~~~~~g~~~~~v~~~~i~~~p~--d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1093 (1120)
                      +..+.....          .  ..++.++  -...+++++.||.|+.||..+|+..|...
T Consensus       153 ~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          153 RWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            766542111          0  1112220  01567788999999999999999777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.85  E-value=6.7e-10  Score=124.19  Aligned_cols=186  Identities=12%  Similarity=0.014  Sum_probs=110.7

Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eE
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT  912 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~  912 (1120)
                      ++..+++++ ||.|+.||..+++.+..+..  ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            566788887 89999999999999888775  4555555666 6778888889999999999999887776544321 11


Q ss_pred             -EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001224          913 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  990 (1120)
Q Consensus       913 -~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~  990 (1120)
                       +..+. ++..|++++.|+.|+.||..+|+......     .+       ....++|++..+++ +.++.|+.||..+|+
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-----SA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-----CC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence             11111 34577788889999999999987543211     11       12345667777777 578999999999998


Q ss_pred             eeeccccCCCCCCeeEEEECCCC---cEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          991 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       991 ~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+..+....    ....+++.+.   ..+++++.||.|+.||..+|+.+.+..
T Consensus       152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            765543211    2223344432   567778899999999999999887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.81  E-value=0.00099  Score=84.48  Aligned_cols=224  Identities=7%  Similarity=0.022  Sum_probs=126.4

Q ss_pred             EEEEEeCCcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeCC----------------------------
Q 001224          838 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD----------------------------  887 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----------------------------  887 (1120)
                      -++..+++.++|..+...+.  +++++ -...+..++++| ..+.++.+..+                            
T Consensus       708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            45555566788888754322  23333 234678888888 55544443311                            


Q ss_pred             ---------------------CcEEEEEeecceeeEeecc-cccceEEEE---EccC-CCEEEEEe----------CCCC
Q 001224          888 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ  931 (1120)
Q Consensus       888 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~  931 (1120)
                                           +.|++.|..+++.+..+.- ....+.+++   |..+ ..+|+.|.          ..|.
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                                 2356666666665544432 123344444   4333 46788776          2477


Q ss_pred             EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECC
Q 001224          932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus       932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
                      |.++++..++. ........+      +.+++++-- +| +|+++-...+++|++...+.++ .....+. .|..+....
T Consensus       866 i~vf~v~~~kL-~lv~~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~  934 (1158)
T 3ei3_A          866 IVVFQYSDGKL-QTVAEKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT  934 (1158)
T ss_dssp             EEEEEEETTEE-EEEEEEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred             EEEEEEECCEE-EEEEEEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence            99999874321 111111111      356666533 34 6777778999999998765433 1111111 233333333


Q ss_pred             CCcEEEEEEcCCcEEEEEc--CCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1012 DSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~v~iwd~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .+.++++|..-..|.++..  ..+++...-.  ++.+       .+++++.|..  ...++.+..+|.+++.+...
T Consensus       935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence            5778888987777777654  3444432211  2222       4455788874  35888899999999998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.71  E-value=7.1e-07  Score=92.21  Aligned_cols=216  Identities=11%  Similarity=0.019  Sum_probs=144.9

Q ss_pred             ceeeeecCCCC--CeEEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeEeeccccc-ceEEEEEccCCCEE-EEEeCC
Q 001224          856 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD  929 (1120)
Q Consensus       856 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D  929 (1120)
                      +.+.++. |..  ....++|++ ++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  ++.| ++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            4555664 443  368999999 6766655543  57999999999998887652221 22345554  4455 455567


Q ss_pred             CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCC---Cee
Q 001224          930 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT 1005 (1120)
Q Consensus       930 g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~ 1005 (1120)
                      +.+.++|..+.+......    .+ .+     ....+++||+.++++ .++.|.++|..+.+.+..+....+..   .+.
T Consensus        86 ~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            899999999865433211    11 11     224466788877775 56799999999998888876543222   366


Q ss_pred             EEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccC----CCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEE
Q 001224         1006 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081 (1120)
Q Consensus      1006 ~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~----~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW 1081 (1120)
                      .+.|. +|+..+....++.|.+.|..+++.+..+......+    .++ .....+..++|+|+...+++++...+.+++-
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            88888 77655555567899999999999999987432111    110 1113345899999655677888889999999


Q ss_pred             ecCCCC
Q 001224         1082 EPLESE 1087 (1120)
Q Consensus      1082 ~~~~~~ 1087 (1120)
                      ++...+
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            988754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.70  E-value=1.4e-06  Score=90.09  Aligned_cols=200  Identities=10%  Similarity=0.051  Sum_probs=136.8

Q ss_pred             CccEEEEccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          826 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      ....++|++|+...++.+   ++.|+++|+.+++.+..+..... ....+++.  ++++.++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            357899999875555443   47899999999999888653222 23455555  4566666667899999999999998


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  980 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~  980 (1120)
                      .++..-...  ...+++||+.|+.+..++.|.++|..+.+.......... +..  ...+..+.|. +|+..+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence            888533111  244666888777777788999999988654333222211 100  0124577777 77655554 5789


Q ss_pred             EEEEEcCCceeeeccccCC---------C--CCCeeEEEECCCCcEEEE-EEcCCcEEEEEcCCc
Q 001224          981 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLVYA-CFLDATVCVFSAANL 1033 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~---------h--~~~v~~l~~s~dg~~l~s-~~~Dg~v~iwd~~~~ 1033 (1120)
                      |.+.|..+++.+..+...+         +  ......|+|+|+++.|++ +...+.|++.++.+.
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999988876421         0  135689999999876554 546788998887664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.67  E-value=1.2e-05  Score=85.20  Aligned_cols=202  Identities=10%  Similarity=-0.023  Sum_probs=132.1

Q ss_pred             CccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      .+..+++++++..|..+.  ++.|..++.........+.........++++++++.++++-...+.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467899999877777766  688999999765543334333356899999994455555555678999999764322222


Q ss_pred             ecccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  978 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d  978 (1120)
                      ..........++++|++..|..+..   .+.|..++++....   ..+.....     .....+++++++..|.++  ..
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~~~-----~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDNL-----GLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTTC-----SCEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEECCC-----CCCcEEEEcCCCCEEEEEECCC
Confidence            2222245689999997666655543   36788888765321   11111111     245889999988777664  56


Q ss_pred             CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +.|.++|...........  . ......+++  |+..|+.+. ..+.|.++|..+++.+..+.
T Consensus       189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TEEEEEETTEEEEEEEEE--C-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceEEEec--C-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            789999998654433322  1 234566765  355555555 45899999999999988876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.66  E-value=1.9e-06  Score=104.06  Aligned_cols=168  Identities=14%  Similarity=0.136  Sum_probs=112.1

Q ss_pred             EEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeEeecc--cc-------cceEEEEEccCC
Q 001224          869 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  920 (1120)
Q Consensus       869 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  920 (1120)
                      ..++++| +..+++.++.++                   .|..+|..+|+.+..++.  |.       .+.....+..+|
T Consensus       233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            3578888 667888887766                   399999999998877654  32       222223333467


Q ss_pred             C---EEEEEeCCCCEEEEECCCcccccceeeec---------cCCC-------C-C-----------CCCCCcEEEEccC
Q 001224          921 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD  969 (1120)
Q Consensus       921 ~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~i~~~~fspd  969 (1120)
                      +   .|+.++.+|.+.++|..+|+.........         ..+.       . .           ....-..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            5   68899999999999999987642111000         0000       0 0           0000123788888


Q ss_pred             CcEEEEE-------------------------------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCC
Q 001224          970 QIHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1012 (1120)
Q Consensus       970 g~~la~~-------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d 1012 (1120)
                      ..++.+.                                     .++.|..||+.+++.+-....   ..++....+...
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~  468 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA  468 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence            7766541                                     127799999999998765542   223333445557


Q ss_pred             CcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1013 SQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1013 g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +.++++++.||.|++||..+|+.+.++.
T Consensus       469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          469 GNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCcccchhhhhhcChhheEec
Confidence            8889999999999999999999999887

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.65  E-value=1.2e-05  Score=94.66  Aligned_cols=166  Identities=13%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeEeecccc----------cceEEEEEc-cCC--
Q 001224          870 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL--  920 (1120)
Q Consensus       870 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~--  920 (1120)
                      .+++.+ +..++..+..+                +.|.-+|..+|+.+..++...          .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            456777 55566666655                379999999999887665421          1121 2222 467  


Q ss_pred             -CEEEEEeCCCCEEEEECCCcccccceeeec----------cCCCC---------------------CCCCCCcEEEEcc
Q 001224          921 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ  968 (1120)
Q Consensus       921 -~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~~~fsp  968 (1120)
                       +.++.++.+|.+.+.|..+++.........          ..+..                     .....-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567888999999999999987644322110          00000                     0000113567777


Q ss_pred             CCcEEEEE----------------------------------------eCCeEEEEEcCCceeeeccccCCCCCCeeEEE
Q 001224          969 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1008 (1120)
Q Consensus       969 dg~~la~~----------------------------------------~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~ 1008 (1120)
                      +..++.+.                                        ..+.|..||+.+++.+-.....   .++..-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence            76665541                                        2357888898888876554321   1121111


Q ss_pred             ECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1009 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1009 ~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +...+.+++.++.||.++.||..+|+.+.+++
T Consensus       480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            23356777889999999999999999998887

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.64  E-value=0.0034  Score=77.42  Aligned_cols=533  Identities=12%  Similarity=0.080  Sum_probs=272.4

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      ...|.++....+|.  |-.|+.+| +..||..+.+...  .                 .......|.++.. .+| .|..
T Consensus        62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--~-----------------~~~~~~~i~~i~~-~~g-~lWi  117 (758)
T 3ott_A           62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--P-----------------ETDFPTDVRTMAL-QGD-TLWL  117 (758)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--C-----------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred             CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--c-----------------ccCCCceEEEEEe-cCC-cEEE
Confidence            45689988888886  45555554 7899987753211  0                 0111235777764 345 4555


Q ss_pred             EECCCeEEEEEccCCceeeeeeee-cc-cccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-ecc----cc
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEI-DA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA  516 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l-~~-h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h----~~  516 (1120)
                      |+.+ -+..+|..+++... .... .+ ....|.++....+|.  +.+ |+.+ -|..+|..+++..... ...    ..
T Consensus       118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  191 (758)
T 3ott_A          118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL  191 (758)
T ss_dssp             EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred             EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence            6666 58888987765321 1000 01 134688888888887  333 4444 4778887766543211 111    12


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|.++..  +.++..|..|+. +-+..+|..+.... .+.       .             .....+..+..+.++. |.
T Consensus       192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~-lW  246 (758)
T 3ott_A          192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGD-LL  246 (758)
T ss_dssp             CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCC-EE
T ss_pred             eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCC-EE
Confidence            3777664  333334444443 45777776542211 110       0             0112345555555555 44


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCC------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADG------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  670 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  670 (1120)
                      .|+. +-+.+++..++.... +....      ....|.++....+|.+.+ |+..| +.++.. ..  ..+.+       
T Consensus       247 igT~-~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~-------  312 (758)
T 3ott_A          247 AGTD-NGLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI-------  312 (758)
T ss_dssp             EEET-TEEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE-------
T ss_pred             EEeC-CceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE-------
Confidence            4554 458888887665432 22111      113467777777776554 44555 443321 11  00000       


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeec
Q 001224          671 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  750 (1120)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~  750 (1120)
                                                                                       ....           
T Consensus       313 -----------------------------------------------------------------~~~~-----------  316 (758)
T 3ott_A          313 -----------------------------------------------------------------PISQ-----------  316 (758)
T ss_dssp             -----------------------------------------------------------------EHHH-----------
T ss_pred             -----------------------------------------------------------------eccc-----------
Confidence                                                                             0000           


Q ss_pred             cCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEE
Q 001224          751 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  830 (1120)
Q Consensus       751 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l  830 (1120)
                      .........|.++....+|...+ ++.+|. ..++.......         .+..+......       ..-....|.++
T Consensus       317 ~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl-~~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i  378 (758)
T 3ott_A          317 ITGTGDGNQFYSLFRDSKGFYWF-GGANGL-IRFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHI  378 (758)
T ss_dssp             HSCSCCCCBEEEEEECTTCCEEE-EETTEE-EEESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEE
T ss_pred             CCCCCCCceEEEEEEcCCCCEEE-eeCCcc-eeecccccccc---------eeEEeccCCcC-------CCCCCCceEEE
Confidence            00000124567777777887444 445553 33332110000         00111100000       00023568888


Q ss_pred             EEccCCCEEEEEeCCcEEEEEcCCCceeeee--cC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc------
Q 001224          831 ALSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------  898 (1120)
Q Consensus       831 ~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------  898 (1120)
                      .-..+|+..+ |+++.|..+|..+++.....  ..    ....|.++...+ +++ |-.|+..+-|.++|..+.      
T Consensus       379 ~~d~~g~lWi-gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~  455 (758)
T 3ott_A          379 YEDKEQQLWI-ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSG  455 (758)
T ss_dssp             EECTTSCEEE-EETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSS
T ss_pred             EECCCCCEEE-EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCc
Confidence            8888887555 34668999998876543221  11    123578887776 555 445776667888886531      


Q ss_pred             eee--Eeec---c-cccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          899 EVK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       899 ~~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      ...  ..+.   + ....|.++...++|.+.+.++..+-|..+|..+++..     ............+.++....+|.+
T Consensus       456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l  530 (758)
T 3ott_A          456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT-----KLFADELTGEKSPNYLLCDEDGLL  530 (758)
T ss_dssp             EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE-----EECTTTSCGGGCEEEEEECTTSCE
T ss_pred             ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE-----EecCCCcCCCcccceEEECCCCCE
Confidence            111  1111   1 1235889999888887763333445888888764321     111111111135677888888887


Q ss_pred             EEEEeCCeEEEEEcCCceeeeccccCC-CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          973 FLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       973 la~~~d~~v~i~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                      .+.+ .+.+..|+..++.... +...+ ....|.++... +|.+ ..++..| +..||..+.+... +.    ++..   
T Consensus       531 Wigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~l-Wi~t~~G-l~~~~~~~~~~~~-~~----~~~~---  597 (758)
T 3ott_A          531 WVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSI-WVSTTNG-LWIIDRKTMDARQ-QN----MTNK---  597 (758)
T ss_dssp             EEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEE-EEEESSC-EEEEETTTCCEEE-C------CCC---
T ss_pred             EEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCE-EEECCCC-eEEEcCCCceeEE-ec----CCCC---
Confidence            7655 4678889877664322 11111 13568888764 6654 4455555 7778988776542 11    2211   


Q ss_pred             CCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                       ...  ...+...+ ..|..|+.+| +..+++..
T Consensus       598 -~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~  626 (758)
T 3ott_A          598 -RFT--SLLFDPKE-DCVYLGGADG-FGISHSNL  626 (758)
T ss_dssp             -CCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred             -cee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence             122  34444334 4677777777 45667654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.63  E-value=0.0047  Score=78.35  Aligned_cols=215  Identities=10%  Similarity=0.088  Sum_probs=121.0

Q ss_pred             cCceeecCCCCCcccc-cCCCCCCCCCccEEEE---ccC-CCEEEEEe-----------CCcEEEEEcCCCceeeee-cC
Q 001224          801 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL---SKN-DSYVMSAS-----------GGKISLFNMMTFKTMATF-MP  863 (1120)
Q Consensus       801 ~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~l~~---s~d-~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~  863 (1120)
                      ..+++.|+.+.+.+.. .+.   ....+.+++.   ..+ ..++++|.           .|.|.+|++..++..... ..
T Consensus       807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~  883 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE  883 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence            3466777776664322 222   3444555543   222 46888774           256999998744322111 12


Q ss_pred             CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccc
Q 001224          864 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  943 (1120)
Q Consensus       864 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~  943 (1120)
                      ..+.+++++--  +|++||..  ...|++|++...+.+..-..+-..|..+.....+++++.|+.-..|.+...+..+. 
T Consensus       884 v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~-  958 (1158)
T 3ei3_A          884 VKGAVYSMVEF--NGKLLASI--NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG-  958 (1158)
T ss_dssp             ESSCEEEEEEE--TTEEEEEE--TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-
T ss_pred             cCCcCEEEeee--CCEEEEEc--CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-
Confidence            35678887754  46555533  57899999986654331111122233333333578999998888887776544222 


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------eeeccccCCCCCCeeEEE---EC
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQWVPRESSAPITHAT---FS 1010 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~----------~~~~~~~~~h~~~v~~l~---~s 1010 (1120)
                        ..........  ...++++.|-.++.++++-.++.+.++......          ....+.   ....|+++.   +.
T Consensus       959 --~L~~~a~D~~--~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A          959 --NFEEIARDFN--PNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLV 1031 (1158)
T ss_dssp             --EEEEEEECCS--CBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSC
T ss_pred             --eEEEEEeecc--cccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeee
Confidence              1111111111  146788888877766666688899988765421          111221   155677775   33


Q ss_pred             CCC---------cEEEEEEcCCcEEEEEc
Q 001224         1011 CDS---------QLVYACFLDATVCVFSA 1030 (1120)
Q Consensus      1011 ~dg---------~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      +.+         ..++.++.+|.|.+.--
T Consensus      1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             cCCCccccccccceEEEEecCCEEEEEEE
Confidence            332         34777888999887743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=4.9e-06  Score=100.43  Aligned_cols=212  Identities=14%  Similarity=0.048  Sum_probs=125.2

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccc-------cCe-EEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-------GGV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  509 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-------~~V-~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~  509 (1120)
                      +..|.+++.++.|.-+|..+|+.+-....-....       ..+ ..+++  ++.  .++.++.|+.|..+|..+|+.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGD--KVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBT--EEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECC--EEEEEcCCCEEEEEECCCCCEee
Confidence            6677778889999999999998765321100000       001 11222  234  47778889999999999999998


Q ss_pred             Eeeccc----cCeEE-EeeccCCCceEEEEEec------CCeEEEEecCCCCCceeeeCCCC-ceeE-----E--EE-cC
Q 001224          510 IFEGHE----APVYS-VCPHHKENIQFIFSTAL------DGKIKAWLYDNLGSRVDYEAPGR-WCTT-----M--AY-SA  569 (1120)
Q Consensus       510 ~~~~h~----~~v~~-~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~-~v~~-----~--~~-s~  569 (1120)
                      .+....    ..+.+ ..+   .++ .++.+..      +|.|..+|..+++.+..+..... ....     +  .. .-
T Consensus       142 ~~~~~~~~~~~~~~~~P~v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRV---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEE---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             eeccCCCCCcceecCCCEE---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            776421    11110 011   122 4444433      58999999999888877653211 0000     0  00 00


Q ss_pred             CCCeEEec-ccccceeEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCceeEEEecCCCC-----
Q 001224          570 DGTRTYQG-FRKRSLGVVQFDTTKNRFLAAGDDF-------------------SIKFWDMDSVQLLTSIDADGGL-----  624 (1120)
Q Consensus       570 ~g~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-----  624 (1120)
                      ++...+.. ........++++++.+.++.++.++                   .|..+|.++|+.+..++...+.     
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence            00000000 0111223467888888888887766                   4999999999999888753221     


Q ss_pred             --CCcCeEEEcCCCC---EEEEEECCCcEEEEEccCcc
Q 001224          625 --PASPRIRFNKDGC---LLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       625 --~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~  657 (1120)
                        .......+..+|+   .++.++.+|.++++|..+++
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence              1111122223665   68889999999999999983

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=9.1e-07  Score=89.80  Aligned_cols=198  Identities=13%  Similarity=0.075  Sum_probs=131.3

Q ss_pred             ceeeeecCCCCC--eEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEE--EEEccCCCEEEEEeCCCC
Q 001224          856 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQ  931 (1120)
Q Consensus       856 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~Dg~  931 (1120)
                      +.+.++. |...  ...+.|+  ++.++.+.+.+|.|+++|+.+++.+..+ - ......  +++.. ++..+..-.++.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred             EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCE
Confidence            3445553 4433  4788887  5788888888999999999999988877 2 233333  45532 234444556889


Q ss_pred             EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCCC---CeeEE
Q 001224          932 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 1007 (1120)
Q Consensus       932 v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~~---~v~~l 1007 (1120)
                      +.+||.++.+.......  . +        ....+++|++.|+++ .++.|.++|..+.+.+..+....+..   .+..+
T Consensus       118 v~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL  186 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL  186 (268)
T ss_dssp             EEEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence            99999999665433222  1 1        123344677877775 57899999999999988877544333   34667


Q ss_pred             EECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCC----CCCCCCccceEEEecCCCCCEEEEE
Q 001224         1008 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GVSSSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus      1008 ~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
                      .|. +|+..+....+..|.+.|..+|+.+..+......+.    .+... -.+-.|||+|....+++||
T Consensus       187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~-~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPE-AVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTT-CCEEEEEECTTTCCEEEEE
T ss_pred             EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcC-CceEEEEEcCCCCEEEEeC
Confidence            776 777665555678999999999999999885432210    00111 1234899999655666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=1.6e-06  Score=88.13  Aligned_cols=201  Identities=9%  Similarity=0.081  Sum_probs=131.1

Q ss_pred             ceeeeecCCCCC--eEEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEE-eCCC
Q 001224          856 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADS  930 (1120)
Q Consensus       856 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg  930 (1120)
                      +.++++. |...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.-.. ........+++..|... -.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence            3455664 5444  4789998  467777777776  99999999999888876433 33333333345555544 4588


Q ss_pred             CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCC---CCeeE
Q 001224          931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 1006 (1120)
Q Consensus       931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~ 1006 (1120)
                      .+.+||.++.+........   +        ....+++|++.|+.+ .++.|.++|..+.+.+..+......   ..+..
T Consensus       108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            8999999986653322221   1        223445677777774 4678999999999988887653322   33455


Q ss_pred             EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC--CCCCccceEEEecCCCCCEEEEEe
Q 001224         1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV--SSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus      1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      +.|. +|+..+..-.+..|.+.|..+|+.+..+......+...  ....-.+-.|||+|. .+.|.+.+
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~-~~~lfVTG  243 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE-HHRLFVTG  243 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT-TTEEEEEE
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC-CCEEEEEC
Confidence            7776 78766655568899999999999999988553332210  011112348999995 45554444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.58  E-value=2.2e-05  Score=92.51  Aligned_cols=196  Identities=9%  Similarity=-0.091  Sum_probs=117.6

Q ss_pred             EEEEccCCCEEEEEe-C----------------CcEEEEEcCCCceeeeecC--CC-------CCeEEEEEecCCC---c
Q 001224          829 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMP--PP-------PAATFLAFHPQDN---N  879 (1120)
Q Consensus       829 ~l~~s~d~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~--~~-------~~i~~l~~sp~d~---~  879 (1120)
                      .+++.++...+..+. +                +.|..+|..+++.+-.++.  |.       ....-+.... ++   +
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence            356666666666554 2                2599999999998766642  21       1112223334 56   4


Q ss_pred             EEEEEeCCCcEEEEEeecceeeEeecccc-------------cce--------------------------EEEEEccCC
Q 001224          880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL  920 (1120)
Q Consensus       880 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~  920 (1120)
                      +++.++.+|.++++|..+|+.+.......             .+|                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            67889999999999999998876653211             111                          246788888


Q ss_pred             CEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCC
Q 001224          921 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1000 (1120)
Q Consensus       921 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h 1000 (1120)
                      .+|.....+....++.....-         ..+. ...+....+..+|.+.  ....++.|..||+.+++.+-.+...  
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~--  463 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK--  463 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred             CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence            888887777655555443210         0010 0000001122233221  0013467888999888876655432  


Q ss_pred             CCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1001 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1001 ~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                       ..+.+..+...+.++++++.||.|+.||..+|+.+.++.
T Consensus       464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence             222222333356677779999999999999999998887

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.56  E-value=2.3e-06  Score=87.00  Aligned_cols=187  Identities=10%  Similarity=0.076  Sum_probs=125.7

Q ss_pred             ccEEEEccCCCEEEEEe-CC--cEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          827 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...+.|+ ++.+..+.+ +|  .|+++|+++++.+..+.... ......+.++++++.+..-.++.+.+||..+.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4778898 665555554 55  79999999999988876433 3333323332455666666789999999999999988


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  982 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~  982 (1120)
                      +....   ....+++|++.|+....++.|.++|..+.+......... .+..  ...+..+.|. +|+..+.. .++.|.
T Consensus       123 i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~I~  195 (262)
T 3nol_A          123 FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNKIV  195 (262)
T ss_dssp             EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCeEE
Confidence            87533   223444678877776667889999998866543322221 1111  0123346666 77655554 678999


Q ss_pred             EEEcCCceeeeccccCCC----------CCCeeEEEECCCCcEEEEEEcC
Q 001224          983 IFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus       983 i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
                      +.|..+++.+..+...+-          ..-...|||+|+++.|++++..
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            999999999887765321          2345889999998888777643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.55  E-value=2.7e-05  Score=91.86  Aligned_cols=82  Identities=10%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             CCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224          887 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  966 (1120)
Q Consensus       887 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  966 (1120)
                      +|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++......  ...+.     ....+.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~~  514 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMTY  514 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEEE
Confidence            578999999999887776532 233333334456677789999999999999987643322  22111     1133456


Q ss_pred             ccCCcEEEEE
Q 001224          967 HQDQIHFLVV  976 (1120)
Q Consensus       967 spdg~~la~~  976 (1120)
                      ..+|++++..
T Consensus       515 ~~~G~~yv~~  524 (571)
T 2ad6_A          515 SFKGKQYIGS  524 (571)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            6788766654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.49  E-value=0.0001  Score=77.82  Aligned_cols=224  Identities=12%  Similarity=0.032  Sum_probs=136.8

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  444 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  444 (1120)
                      ..+.+++|+|++..|+++...++.|.+++..++....                   +..........+++++++..|..+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence            4578999999888777777778999999997654321                   111222467899999976666655


Q ss_pred             -ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--CCcEEEEECCCCceeEEee-ccccCeEE
Q 001224          445 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS  520 (1120)
Q Consensus       445 -~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~-~h~~~v~~  520 (1120)
                       ...+.|.+++.++.....   ...........++++|++..+| ++...  .+.|..+++.. .....+. ........
T Consensus        97 d~~~~~I~~~~~~g~~~~~---~~~~~~~~P~~i~vd~~~g~ly-v~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQRRV---LFDTGLVNPRGIVTDPVRGNLY-WTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG  171 (267)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEETTTTEEE-EEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred             ECCCCEEEEEEcCCCCEEE---EEECCCCCccEEEEeeCCCEEE-EEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence             456789999987643211   1222224678999999777533 33332  46888888753 3333332 22345677


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      +++++.. +.+.++-...+.|..+|........... ...                     ....++.. .+..+++...
T Consensus       172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~---------------------~P~gi~~d-~~~lyva~~~  227 (267)
T 1npe_A          172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ---------------------YPFAVTSY-GKNLYYTDWK  227 (267)
T ss_dssp             EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEE-CCC---------------------SEEEEEEE-TTEEEEEETT
T ss_pred             EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEec-CCC---------------------CceEEEEe-CCEEEEEECC
Confidence            8875432 2444555567889999886422111111 001                     11223333 2233444446


Q ss_pred             CCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCC
Q 001224          601 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  637 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  637 (1120)
                      .+.|.++|..+++.+..+.... ......+++.|++.
T Consensus       228 ~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          228 TNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             CCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            7899999999999888886432 12367788888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.48  E-value=0.00013  Score=86.05  Aligned_cols=150  Identities=15%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             CcEEEEEeecceeeEeecc--ccc----ceEE-EEEc---cCCC---EEEEEeCCCCEEEEECCCcccccceeeec----
Q 001224          888 SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----  950 (1120)
Q Consensus       888 g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s---~d~~---~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~----  950 (1120)
                      +.|.-+|..+|+.+-.++.  |..    .+.. +.+.   .+|+   .++.++.+|.+.++|..+++.........    
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            5899999999998877643  321    1111 2222   4674   78889999999999999987643222110    


Q ss_pred             --------------cCCCC----------------CCC---CCCcEEEEccCCcEEEE-Ee-------------------
Q 001224          951 --------------PTGRT----------------PTA---QSDTRVQFHQDQIHFLV-VH-------------------  977 (1120)
Q Consensus       951 --------------~~~~~----------------~~~---~~i~~~~fspdg~~la~-~~-------------------  977 (1120)
                                    .....                +..   ..-..++++|+..++.+ ..                   
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                          00000                000   00124677777555544 21                   


Q ss_pred             --------------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          978 --------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       978 --------------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                                    ++.|..||+.+++.+-.....   .++..-.+...+.+++.|+.||.++.||..+|+.+.+++
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                          467999999999887554422   122221222246778889999999999999999999887

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.46  E-value=6.3e-05  Score=82.07  Aligned_cols=239  Identities=13%  Similarity=0.082  Sum_probs=146.0

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec--C------------------CCCCeEEEEEecCCCcEEEE
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAI  883 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~--~------------------~~~~i~~l~~sp~d~~~las  883 (1120)
                      ....+++++++++++.++. ++.|..|+..++... .+.  .                  ....+..++++++++++ .+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l-~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL-YI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE-EE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE-EE
Confidence            3456789999998677776 789999998765432 221  0                  01357889999734554 44


Q ss_pred             EeCCCcEEEEEeecceeeEeec----c-cccceEEEEEcc-CCCEEEEEeC-----------------CCCEEEEECCCc
Q 001224          884 GMDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGW  940 (1120)
Q Consensus       884 g~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~v~iWd~~~~  940 (1120)
                      +...+.|..+|..+++. ..+.    + .......+++.+ +|++.++-..                 ++.|..||..++
T Consensus        97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            54455588888765532 2221    1 123467899999 9987776432                 366888887665


Q ss_pred             ccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce--eeeccccCCCCCCeeEEEECCCCcEE
Q 001224          941 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus       941 ~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
                      +...  .....       .....++++|+|+.|.++  ..+.|.+|++....  ....+..  ..+ ...+++.++|++.
T Consensus       176 ~~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          176 ETTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFW  243 (322)
T ss_dssp             EEEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEE
T ss_pred             EEEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEE
Confidence            4211  11111       134689999999876664  56789999987521  1111111  123 7889999999877


Q ss_pred             EEEEc----------CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCC
Q 001224         1017 YACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1017 ~s~~~----------Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      ++...          .+.|..+|. .++.+..+.    .+.|...  ..+..+++.  +++++++....+.|.++++...
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred             EEecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence            66544          467888886 477776665    2322111  122256663  4666666667889999987654


Q ss_pred             C
Q 001224         1087 E 1087 (1120)
Q Consensus      1087 ~ 1087 (1120)
                      .
T Consensus       315 ~  315 (322)
T 2fp8_A          315 G  315 (322)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.46  E-value=9.5e-05  Score=87.19  Aligned_cols=210  Identities=11%  Similarity=-0.021  Sum_probs=120.8

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeeeecccccC-------eEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      +..|.+++.++.|.-+|.++|+.+-... +......       -..++.  .+.  .++.++.|+.|.-+|..+|+.+..
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYN-HRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEE-CCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEc-CCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEee
Confidence            4455556664458889999998765332 1111000       011222  233  377778899999999999999877


Q ss_pred             eecccc----CeE-EEeeccC-CCce-EEEEEec------CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEE--
Q 001224          511 FEGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--  575 (1120)
Q Consensus       511 ~~~h~~----~v~-~~~~~~~-~~~~-~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~--  575 (1120)
                      ......    .+. +..+... .+++ .++.++.      ++.|..+|..+++.+.........+     .|++.+.+  
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~  217 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTV  217 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEE
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCccccc
Confidence            653321    111 0011111 1222 5655543      7899999999988877654322111     11111000  


Q ss_pred             ---------ecc--------------cccceeEEEEcCCCCEEEEEeC--------------------C----CeEEEEE
Q 001224          576 ---------QGF--------------RKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWD  608 (1120)
Q Consensus       576 ---------~~~--------------~~~~i~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd  608 (1120)
                               .+.              ....-...+++|+...++.+..                    |    +.|..+|
T Consensus       218 ~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD  297 (582)
T 1flg_A          218 TGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD  297 (582)
T ss_dssp             SSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred             ccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence                     000              0011124567777777776653                    2    6899999


Q ss_pred             CCCCceeEEEecCCCC----CCcCe-EEEc---CCCC---EEEEEECCCcEEEEEccCcc
Q 001224          609 MDSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGI  657 (1120)
Q Consensus       609 ~~~~~~~~~~~~~~~~----~~v~~-~~~s---~~~~---~l~~~~~dg~i~iwd~~~~~  657 (1120)
                      ..+|+.+..++...+.    ..+.. +.+.   .+|+   .++.++.+|.++++|..+++
T Consensus       298 ~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          298 PSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence            9999999888653221    01111 2222   4674   78889999999999999883

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.44  E-value=0.00015  Score=78.44  Aligned_cols=246  Identities=13%  Similarity=0.056  Sum_probs=144.1

Q ss_pred             CCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          351 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      +..+.++...+........++|+|+|+ |+++...++.|..||..... ...     +.               ......
T Consensus        18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~-----~~---------------~~~~p~   75 (306)
T 2p4o_A           18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QIH-----AT---------------VEGKVS   75 (306)
T ss_dssp             CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EEE-----EE---------------CSSEEE
T ss_pred             cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EEE-----Ee---------------CCCCce
Confidence            334555666666567889999999998 67777778999999987532 211     11               123688


Q ss_pred             EEEEcCCCCeEEEEECC-C-eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce-
Q 001224          431 RVIWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-  507 (1120)
Q Consensus       431 ~l~~spdg~~las~~~d-g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~-  507 (1120)
                      .++++++|+++++.... + .|..++..+++.. ....+. .......++..+++.  .+++...++.|.++|..++.. 
T Consensus        76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence            99999999976665443 2 4666777777632 222221 122335556555554  556666688899999776532 


Q ss_pred             eEEeec---------cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecc
Q 001224          508 QYIFEG---------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  578 (1120)
Q Consensus       508 ~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~  578 (1120)
                      +....+         .......+  +++. +.+.++-...+.|..+++.......     ...+.. .+           
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~-----------  211 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ-----------  211 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-----------
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-----------
Confidence            211111         11123334  2322 2344555567889999887421110     000000 00           


Q ss_pred             cccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc---CCCCEEEEEECC
Q 001224          579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND  645 (1120)
Q Consensus       579 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d  645 (1120)
                        .....++++++|+.+++....+.|.+++.. ++...............+++|.   |+++.|++.+..
T Consensus       212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence              012336777777777776678899999975 5543321112222357889998   888888777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.44  E-value=4.8e-06  Score=84.55  Aligned_cols=183  Identities=9%  Similarity=0.050  Sum_probs=123.5

Q ss_pred             ccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE--EEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          827 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...+.|+. +.+..+.+ +|.|+++|+++++.++.+ - .....  .+++.  ++++.+..-.++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            46788873 44444444 788999999999998887 2 23333  35554  456666666789999999999999998


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  982 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~  982 (1120)
                      +... ..=+.++  +|++.|+.+..++.|.++|..+.+.............   ...+..+.|. +|+..+.. .+..|.
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCeEE
Confidence            8753 2224444  5788888777788999999988765433322221111   0133556666 77655554 678999


Q ss_pred             EEEcCCceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEc
Q 001224          983 IFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       983 i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                      +.|..+++.+..+...+           -..-...|+++|+++.|++.+.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99999999887765421           1235689999998776666653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.42  E-value=3.5e-05  Score=90.62  Aligned_cols=250  Identities=11%  Similarity=0.062  Sum_probs=149.2

Q ss_pred             EEEccCCCE----EEEEe-CCcEEEEEcCCCceeeeecCCC----CCeEE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001224          830 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY  893 (1120)
Q Consensus       830 l~~s~d~~~----l~~~s-dg~i~vwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~lasg~------~dg~v~vw  893 (1120)
                      ++++|.+..    +++++ |+.|..+|..+++.+-......    ..+++ -.+.  ++. +++++      .+|.|+-+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~  187 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY  187 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence            455443333    66676 8999999999999876654322    02221 1222  454 44444      37999999


Q ss_pred             EeecceeeEeecccccc-------------------------------------e-EEEEEccCCCEEEEEeCC------
Q 001224          894 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGAD------  929 (1120)
Q Consensus       894 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~D------  929 (1120)
                      |..+|+.+-.+......                                     + ..+++.++...+..+..+      
T Consensus       188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence            99999988665432110                                     1 134555666777766655      


Q ss_pred             ----------CCEEEEECCCcccccceeeeccCCC-CCCCCCCcEEEEc-cCC---cEEEE-EeCCeEEEEEcCCceeee
Q 001224          930 ----------SQLCVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFH-QDQ---IHFLV-VHETQLAIFETTKLECVK  993 (1120)
Q Consensus       930 ----------g~v~iWd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fs-pdg---~~la~-~~d~~v~i~d~~~~~~~~  993 (1120)
                                +.|..+|.++++..........+.. ........-+... .+|   ..++. ..+|.+.++|..+|+.+.
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                      3789999999876432221111000 0000011112222 567   34554 488999999999998876


Q ss_pred             ccccCC-----------CCCC--------------------------eeEEEECCCCcEEEEEE----------------
Q 001224          994 QWVPRE-----------SSAP--------------------------ITHATFSCDSQLVYACF---------------- 1020 (1120)
Q Consensus       994 ~~~~~~-----------h~~~--------------------------v~~l~~s~dg~~l~s~~---------------- 1020 (1120)
                      ......           ...+                          -..++|+|+..++++..                
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            543211           0111                          13467788777665532                


Q ss_pred             -----------------------cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224         1021 -----------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus      1021 -----------------------~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
                                             .+|.|..||+.+|+.+-+.....  + . .+.     .+..   .+.+++.++.||.
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~-~-~~g-----~~~t---agg~vf~gt~dg~  495 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--A-V-WGG-----TMAT---AGDLVFYGTLDGY  495 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--C-C-CSB-----CEEE---TTTEEEEECTTSE
T ss_pred             CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--C-c-cCc-----ceEe---cCCEEEEECCCCe
Confidence                                   34789999999999887765111  1 0 000     1221   3678888999999


Q ss_pred             EEEEecCCCCCCCCCCC
Q 001224         1078 VHVFEPLESEGKWGVPP 1094 (1120)
Q Consensus      1078 v~vW~~~~~~~~~~~~~ 1094 (1120)
                      |+.||..+|+..|...-
T Consensus       496 l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          496 LKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCCEEEEeeC
Confidence            99999999998887643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=1.4e-05  Score=80.53  Aligned_cols=201  Identities=12%  Similarity=0.134  Sum_probs=129.2

Q ss_pred             ceeeeecCCCC--CeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeEeecccccceEEEEEccCCCEE-EEEeCCC
Q 001224          856 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS  930 (1120)
Q Consensus       856 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg  930 (1120)
                      +.+.++ +|..  -...+.|+.  +.++.+.+.+|  .|+++|+.+++.+..+.-... ........+++.| +..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence            445566 3544  367899985  56777766654  899999999998887754332 2223233334444 4455688


Q ss_pred             CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCCC---CCeeE
Q 001224          931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH 1006 (1120)
Q Consensus       931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~ 1006 (1120)
                      .+.+||.++.+........   +        ....+.+|+..|.++ .++.|.++|..+.+.++.+....+.   ..+..
T Consensus        86 ~v~v~D~~tl~~~~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEEETTTTEEEEEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECCcCcEEEEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            9999999986653322211   1        123444677766664 5778999999999988887754333   23455


Q ss_pred             EEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCC---CCCccceEEEecCCCCCEEEEE
Q 001224         1007 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus      1007 l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
                      +.+. +|+..+....+..|.+.|..+|+.+..+......+....   ...-.+-.||++|....+++||
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            6665 777665555678999999999999999886544332210   0111234899999644455555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.37  E-value=0.00012  Score=79.90  Aligned_cols=253  Identities=10%  Similarity=0.067  Sum_probs=142.4

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcc---ccc---ccccCCCCceEEEEEcC-C
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQA---ALVKDPGVSVNRVIWSP-D  437 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~h~~~V~~l~~sp-d  437 (1120)
                      ....+++|+++|+ ++.++..++.|..||..+++...      |........   ...   .........+..+++.+ +
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            4567889999998 47778889999999988654321      100000000   000   00000113578999998 5


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeeee-ecc-cccCeEEEEEcC-CCCceEEEEecC-----------------CCcE
Q 001224          438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI  497 (1120)
Q Consensus       438 g~~las~~~dg~v~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~s~-----------------d~~i  497 (1120)
                      |+ |..+...+.|..+|..++. ++.... ..+ .......+++.+ +|.  +.++...                 ++.|
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence            54 5555555558888877653 221111 111 123578899999 887  4454322                 3678


Q ss_pred             EEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCCCCC--ceeeeCCCCceeEEEEcCCCCeE
Q 001224          498 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  574 (1120)
Q Consensus       498 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~  574 (1120)
                      ..||..+++....... ......++++  +++..|+.+ ...+.|..|++.....  ...+...                
T Consensus       168 ~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~----------------  228 (322)
T 2fp8_A          168 IKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI----------------  228 (322)
T ss_dssp             EEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC----------------
T ss_pred             EEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC----------------
Confidence            8999877765433221 1233456764  455555444 5668999998875221  0010000                


Q ss_pred             EecccccceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCC--CCCcCeEEEcCCCCEEEEE
Q 001224          575 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS  642 (1120)
Q Consensus       575 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~  642 (1120)
                           .+ ...++++++|+..++...          .+.|..+|. .++.+..+....+  ...+.++++ .+++++++.
T Consensus       229 -----~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          229 -----PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             -----SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             -----CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence                 01 233566666665555443          467888887 4676766654322  234666666 466666665


Q ss_pred             ECCCcEEEEEccC
Q 001224          643 TNDNGIKILATSD  655 (1120)
Q Consensus       643 ~~dg~i~iwd~~~  655 (1120)
                      ..++.|..+++..
T Consensus       301 ~~~~~i~~~~~~~  313 (322)
T 2fp8_A          301 LFHGSVGILVYDK  313 (322)
T ss_dssp             SSCSEEEEEEC--
T ss_pred             cCCCceEEEeccc
Confidence            6778899998753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.36  E-value=3.5e-05  Score=77.71  Aligned_cols=187  Identities=9%  Similarity=0.086  Sum_probs=124.3

Q ss_pred             CCccEEEEccCCCEEEEEe-C--CcEEEEEcCCCceeeeecCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224          825 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  900 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  900 (1120)
                      .-...+.|++ +.+..+.+ +  ..|+.+|+.+++.++........ -..+++.  ++++.+..-.++.+.+||..+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            4456889986 44444444 3  47999999999998887643321 2334444  566666667889999999999999


Q ss_pred             eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001224          901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  979 (1120)
Q Consensus       901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~  979 (1120)
                      +.++..... =++++  +|+..|+.+..++.|.++|..+.+......... .+..  ...+..+.+. +|+..+.. .+.
T Consensus        98 ~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           98 RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred             EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence            998875432 23444  577777766678889999999866543322221 1100  0123445554 66655554 678


Q ss_pred             eEEEEEcCCceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEc
Q 001224          980 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                      .|.+.|..+++.+..+...+           -..-...|+++|+++.|++.+.
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999999987766431           1235688999998887776664

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=4.7e-05  Score=93.47  Aligned_cols=159  Identities=12%  Similarity=0.090  Sum_probs=95.1

Q ss_pred             CceEEEEe-cCCCeEEEEEeCCC----cEEEEecCCC-ceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          366 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       366 ~v~~v~~s-pdg~~lla~g~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      .+...+|| |||++++.+.+.+|    +|+++|+.++ +.+.. .                 +.   .....++|||||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence            67889999 99997665555444    4999999988 63210 0                 11   1235689999999


Q ss_pred             eEEEEECC-----CeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEec-CCCcEEEEECCCCc-ee--E
Q 001224          440 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y  509 (1120)
Q Consensus       440 ~las~~~d-----g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s-~d~~i~vwd~~~~~-~~--~  509 (1120)
                      .|+....|     ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99887765     3588888877642211 1122 223456788999999963333322 23468889988762 22  3


Q ss_pred             Ee-eccccCeEEEeeccCCCceEEEEEecC--C--eEEEEecCC
Q 001224          510 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN  548 (1120)
Q Consensus       510 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~  548 (1120)
                      .+ ....+...++.|+.  ++.+++....+  +  .|..+++.+
T Consensus       313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            33 33445555555422  22344444443  2  555566553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.33  E-value=0.00011  Score=79.35  Aligned_cols=231  Identities=9%  Similarity=0.027  Sum_probs=135.4

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  901 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~  901 (1120)
                      .....++++++++.+++.. ++.|..||... .....+. ....+..+++++ +++++++.....  .|..++..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4567899999998666664 78999999875 3333332 235688999999 777666544332  4666776676643


Q ss_pred             Eeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccC--CCCCCCCCCcEEEEccCCcEEEEE--
Q 001224          902 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT--GRTPTAQSDTRVQFHQDQIHFLVV--  976 (1120)
Q Consensus       902 ~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~fspdg~~la~~--  976 (1120)
                      .... ........++..+++..+++-..++.|.++|..+++...........  ...........+  ++|++.|.++  
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~  186 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT  186 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence            2221 11222345565566655565556788888887653211000000000  000000122344  8898877764  


Q ss_pred             eCCeEEEEEcCC-cee--eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee--eeCCCcccCCCCCC
Q 001224          977 HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSAYLPAGVSS 1051 (1120)
Q Consensus       977 ~d~~v~i~d~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~--~~~~~~~~~~g~~~ 1051 (1120)
                      ..+.|..|++.. +..  ...+..   ......++++++|+++++....+.|.++|.. ++...  .+.    .+     
T Consensus       187 ~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~----~~-----  253 (306)
T 2p4o_A          187 EKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE----QG-----  253 (306)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG----GT-----
T ss_pred             CCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc----cc-----
Confidence            567899999875 321  111110   1346778999999887776667899999975 65532  222    11     


Q ss_pred             CCccceEEEec---CCCCCEEEEEeCC
Q 001224         1052 SNVHPLVIAAH---PQEPNEFALGLSD 1075 (1120)
Q Consensus      1052 ~~v~~~~i~~~---p~d~~~l~s~~~D 1075 (1120)
                       ...+.+++|.   | |++.|++++..
T Consensus       254 -~~~p~~~a~~g~~~-d~~~LyVt~~~  278 (306)
T 2p4o_A          254 -VIGSTAVAFGQTEG-DCTAIYVVTNG  278 (306)
T ss_dssp             -CTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred             -cCCceEEEEecccC-CCCEEEEECCC
Confidence             1235689998   6 56666665544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.32  E-value=0.019  Score=70.68  Aligned_cols=498  Identities=9%  Similarity=0.055  Sum_probs=250.6

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeee-cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCC
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  504 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~  504 (1120)
                      ...|.+|.-..+|. |-.|+.+| +..||-..   ....... ......|.++.-..+|.   |-.|+.+| +..+|..+
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCC
Confidence            45799999888875 44566777 55666332   1111010 11234688888777765   44455554 78999877


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      .+...........|.++..   .++ .|..++.+ -|..+|..+... ..+...          +      .+.....+.
T Consensus        92 ~~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~----------~------~~l~~~~i~  149 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTR----------R------NGLPNNTIY  149 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCE-EEECHH----------H------HCCSCSCEE
T ss_pred             CEEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeE-EEeccC----------C------CCcCCCeEE
Confidence            6443211112234666542   233 34445554 577777654321 111000          0      000111344


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                      .+..+.++. |..++.+ -|..++..+++... +....    ....|.++....++..|.+|+. +.+..++..++ .. 
T Consensus       150 ~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~~-  223 (758)
T 3ott_A          150 SIIRTKDNQ-IYVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-QI-  223 (758)
T ss_dssp             EEEECTTCC-EEEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-EE-
T ss_pred             EEEEcCCCC-EEEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-eE-
Confidence            444444444 4445544 57788887665332 22111    1123667777777765555664 45666775443 10 


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+.                                                                            
T Consensus       224 ~~~~----------------------------------------------------------------------------  227 (758)
T 3ott_A          224 KQTE----------------------------------------------------------------------------  227 (758)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             Eecc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                             .+      ....|.++....+|...+ ++.+| +.+++.....+            ..+.......      .
T Consensus       228 -------~l------~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~------------~~~~~~~~~~------~  274 (758)
T 3ott_A          228 -------AF------HNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPL------------QHIIHDSRNI------Q  274 (758)
T ss_dssp             -------EE------EEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCC------------EEECCCTTCT------T
T ss_pred             -------CC------CCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcE------------EEEEcCCCCc------C
Confidence                   00      123577777777887544 44444 55555422111            0010000000      0


Q ss_pred             CCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeee-----cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          821 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                      .-....|.++....+|..-+....| +.++.....-.....     ......|.++.-.. ++.+.+ |+.+| +..++.
T Consensus       275 ~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lWi-Gt~~G-l~~~~~  350 (758)
T 3ott_A          275 SLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS-KGFYWF-GGANG-LIRFTD  350 (758)
T ss_dssp             SCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT-TCCEEE-EETTE-EEEESC
T ss_pred             cCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC-CCCEEE-eeCCc-ceeecc
Confidence            0134568889888888755544345 555433211111110     11234588888776 565444 55555 555554


Q ss_pred             ecce--eeEeec-------ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE
Q 001224          896 RVDE--VKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  966 (1120)
Q Consensus       896 ~~~~--~~~~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  966 (1120)
                      .+++  ....+.       -....|.++.-..+|.+.+ |+. +-|..|+..+++....... ...+ ......|.++..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~-~~~~-~~~~~~v~~i~~  426 (758)
T 3ott_A          351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIV-DNTG-TYNTNWTYYIFE  426 (758)
T ss_dssp             TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEE-CCC---CBSSSEEEEEE
T ss_pred             cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecC-CCcC-CCCCceEEEEEE
Confidence            4321  111111       1124588888888877655 343 4588999877543211110 0000 001135778888


Q ss_pred             ccCCcEEEEEeCCeEEEEEcCCc------eee--ecc--ccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCccee
Q 001224          967 HQDQIHFLVVHETQLAIFETTKL------ECV--KQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus       967 spdg~~la~~~d~~v~i~d~~~~------~~~--~~~--~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                      ..+|.+.+.+..+.+.++|..+.      ...  ..+  ...-....|.++...++|.+.+.++..+-|..+|..+++..
T Consensus       427 d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~  506 (758)
T 3ott_A          427 DTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT  506 (758)
T ss_dssp             CTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred             cCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence            88888777666678889986531      111  011  11111346999999999997764444556888998887655


Q ss_pred             eeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1037 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1037 ~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ....  .....   .  ..+.++.... +|.+. .|+.. -|..++..++.
T Consensus       507 ~~~~--~~~~~---~--~~~~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~  547 (758)
T 3ott_A          507 KLFA--DELTG---E--KSPNYLLCDE-DGLLW-VGFHG-GVMRINPKDES  547 (758)
T ss_dssp             EECT--TTSCG---G--GCEEEEEECT-TSCEE-EEETT-EEEEECC--CC
T ss_pred             EecC--CCcCC---C--cccceEEECC-CCCEE-EEecC-ceEEEecCCCc
Confidence            3211  11110   1  1223555554 45554 44544 58888877655

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.29  E-value=0.00028  Score=72.34  Aligned_cols=219  Identities=11%  Similarity=0.113  Sum_probs=134.8

Q ss_pred             eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc-cccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          860 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       860 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3455556799999999666777778889999999987 877777632 12457788999998877776677889999887


Q ss_pred             Cccccc-ceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceeeec-----cccCCCCCCeeEEE
Q 001224          939 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WVPRESSAPITHAT 1008 (1120)
Q Consensus       939 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~---~~~~~~-----~~~~~h~~~v~~l~ 1008 (1120)
                      ...... .......-+..........++++|++..|.++ ......+|.+..   ...+..     +....+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            644211 11121111112223567899999998777664 333445555431   111111     11112345689999


Q ss_pred             ECCCCc-EEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1009 FSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1009 ~s~dg~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      +.|... +++.......+.++|.. |+.+..+....... +-......+-.|+|.+ +|+ |..+++-+-++++.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence            999654 55555566789999966 55666665222111 0001113456899999 576 555577776665543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.28  E-value=0.0016  Score=70.76  Aligned_cols=235  Identities=9%  Similarity=0.017  Sum_probs=131.8

Q ss_pred             CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeec---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224          824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  900 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  900 (1120)
                      ...+.++.+++ +..++++..+.|.. ..+.++.-....   .+...+..+.+.+ ++.+++++ .+|.|+.- ...|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence            44678888876 55555565675543 223333222221   2334578888877 67777655 45654321 122322


Q ss_pred             eE-eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224          901 KS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  979 (1120)
Q Consensus       901 ~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~  979 (1120)
                      -. ...++...+.++++.+++.+++.+...+..+-+|-. ++  ....+...  .   ...+..+++.+++..++++.++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECC--S---SSCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCC--C---CCccceeEECCCCCEEEEeCCc
Confidence            11 123455678999999998888766544333333321 11  11122211  1   1367889999999988888888


Q ss_pred             eEEEEEcCCceeeeccccC--CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccce
Q 001224          980 QLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1057 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 1057 (1120)
                      .+.+.+.+.++........  .+...+.++++.+++.+++++ .+|.| .+..+.|+.=..+......+     ..++  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~--  296 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY--  296 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence            8877653434433332211  123468999999988877765 47777 34555564443332110011     1244  


Q ss_pred             EEEecCCCCCEEEEEeCCCcEEEEe
Q 001224         1058 VIAAHPQEPNEFALGLSDGGVHVFE 1082 (1120)
Q Consensus      1058 ~i~~~p~d~~~l~s~~~Dg~v~vW~ 1082 (1120)
                      .+.|.+  +..+++++.+|.|.-++
T Consensus       297 ~v~~~~--~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          297 KILFFS--PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred             EEEEEC--CCceEEEcCCceEEEEc
Confidence            677764  35677777899776655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.27  E-value=4.9e-05  Score=93.29  Aligned_cols=195  Identities=12%  Similarity=0.056  Sum_probs=109.3

Q ss_pred             CccEEEEc-cCCCEEEEEe--CC----cEEEEEcCCC-ceeee-ecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEE
Q 001224          826 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ  891 (1120)
Q Consensus       826 ~v~~l~~s-~d~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~  891 (1120)
                      .+...+|| |||++||.+.  +|    +|+++|+.++ +.+.. +.   .....++|+| |++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence            57789999 9999999765  23    4999999988 63211 11   1134688999 77777666654     2577


Q ss_pred             EEEeeccee--eEeec-ccccceEEEEEccCCCEEEEEeC---CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEE
Q 001224          892 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  965 (1120)
Q Consensus       892 vwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  965 (1120)
                      ++++.++..  ...+. .+......+.|||||++|+..+.   ...|.++|+.++.... .......+..   .....+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence            788766532  12222 22334668899999999886553   3457888888752111 0011111111   1233444


Q ss_pred             EccCCcEEEE-EeC-----CeEEEEEcCCceeeec-cccCCCCCCeeEEEECCCCcEEEEEEcCCc--EEEEEc
Q 001224          966 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1030 (1120)
Q Consensus       966 fspdg~~la~-~~d-----~~v~i~d~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~--v~iwd~ 1030 (1120)
                      |+. |..|+. +..     ..|..+++.+...... +........+..+.+. .+.++++...||.  |+++++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            443 554444 432     2677777765322222 2211112245556654 3345566777776  455564

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.26  E-value=0.00061  Score=69.87  Aligned_cols=164  Identities=10%  Similarity=0.079  Sum_probs=107.8

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      -.+.+..++|+|++..|+++...++.|...|.. ++.+.+.+                 +.+ ....-.|++.+++.+++
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence            346799999999988888888889999999998 77665422                 222 24678889999998777


Q ss_pred             EEECCCeEEEEEccCCceee--eeeee----cccccCeEEEEEcCCCCceEEEEecCCCcEEEEECC---CCceeEEee-
Q 001224          443 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE-  512 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~---~~~~~~~~~-  512 (1120)
                      +.-.++.+.++++.....+.  ....+    .........++|+|+++++++  +.......+|.+.   ....+..+. 
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v--a~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF--FKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE--EEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE--EECcCCceEEEEcccccCCceeeecc
Confidence            76667889999887654322  11111    123456799999999986333  3333333444433   111222221 


Q ss_pred             ------ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCC
Q 001224          513 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  548 (1120)
Q Consensus       513 ------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  548 (1120)
                            .+...+.++++++. .+++++.....+.+..+|...
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC
T ss_pred             hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC
Confidence                  12345678888875 457777777788888888664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.20  E-value=0.0011  Score=72.72  Aligned_cols=239  Identities=12%  Similarity=0.054  Sum_probs=148.6

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  904 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  904 (1120)
                      ...+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+
T Consensus        34 d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             TSSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            3445666666 346666666678888887655444343 34458999999855666666567788999988765433333


Q ss_pred             cccccceEEEEEccCCCEE-EEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eC-Ce
Q 001224          905 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQ  980 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d-~~  980 (1120)
                      ........++++.+.+..| ++-...+.|.+.+++....   ..+.....     .....++++|.+..|..+  .. +.
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~l-----~~P~~iavdp~~g~ly~td~~~~~~  183 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLLWQSL-----EKPRAIALHPMEGTIYWTDWGNTPR  183 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECTTC-----SCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EEEEeCCC-----CCcceEEEecCcCeEEEeccCCCCE
Confidence            3333456789998755544 5555667899999876331   11111111     245889999976666554  34 67


Q ss_pred             EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEE
Q 001224          981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i 1059 (1120)
                      |..+++...... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+...          .-.|..+
T Consensus       184 I~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gi  251 (349)
T 3v64_C          184 IEASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAI  251 (349)
T ss_dssp             EEEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEE
T ss_pred             EEEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEE
Confidence            888887654332 2221 2245678999999777776665 4578999998754333222211          1234567


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1060 AAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1060 ~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++.  ++.++++-...+.|...+..+|+
T Consensus       252 av~--~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          252 TVF--EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEE--CCEEEEecCCCCeEEEEEccCCC
Confidence            774  35667777777888888866665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.15  E-value=0.00088  Score=72.47  Aligned_cols=207  Identities=7%  Similarity=-0.041  Sum_probs=128.9

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCC----CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ...+..++|++++..|....  ++.|..+++..    ......+.........+++++.+++++++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578899998877777665  58899999875    2222223323345688999874566666666778999999764


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeCC--CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      ......+........++++.|++..|..+...  +.|...+++....   ..+.....     .....+++++++..|..
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~~~~~-----~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENI-----QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSC-----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEEECCC-----CCceEEEEeccCCEEEE
Confidence            43322233334567899999877666555443  5787777765321   11111111     24579999998777766


Q ss_pred             E--eCCeEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          976 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       976 ~--~d~~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +  ..+.|..+|+..... ..+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus       181 ~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            4  557899999874332 22221 1223456788884 35555555567889999988887665554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.00047  Score=78.04  Aligned_cols=248  Identities=9%  Similarity=0.037  Sum_probs=142.7

Q ss_pred             CCccEEEEcc-CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEeec
Q 001224          825 EAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRV  897 (1120)
Q Consensus       825 ~~v~~l~~s~-d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~  897 (1120)
                      .....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|.++.. ++    .+.+++ ..
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RE  213 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GG
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CC
Confidence            3567899998 455666665 5789999998765443 333455689999999 7775555443 22    233333 33


Q ss_pred             ceee--EeecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEE
Q 001224          898 DEVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  974 (1120)
Q Consensus       898 ~~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la  974 (1120)
                      +...  ..+.. .....+++++| +|.++++-..++.|..++.+++...  ........     .....++|+|+|++|.
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEE
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEE
Confidence            3222  22221 23456789999 6776776667788999998864321  11221111     2357899999999666


Q ss_pred             EE--eCCeEEEEEcCC--cee--eecccc----CCC---------CCCee-EEEEC--------CCCcEEEEEEcCCcEE
Q 001224          975 VV--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVC 1026 (1120)
Q Consensus       975 ~~--~d~~v~i~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~dg~~l~s~~~Dg~v~ 1026 (1120)
                      ++  ..+.|..++...  +..  +..+..    .+.         -.... .++..        ++|.+.++=...+.|+
T Consensus       286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence            64  567899887653  221  111110    000         11233 45553        3455555555567898


Q ss_pred             EEEcCCcceeeeeCCCc--ccC--CC---CCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1027 VFSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1027 iwd~~~~~~~~~~~~~~--~~~--~g---~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      .++ .+|+.....-...  ...  .|   ....--.|..++++|+++.++++-...+.|+.++++
T Consensus       366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            888 4565443332100  000  01   001112577999998556666666666788887764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.14  E-value=0.0005  Score=77.77  Aligned_cols=250  Identities=8%  Similarity=0.018  Sum_probs=145.0

Q ss_pred             CCccEEEEccC--CCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEeec
Q 001224          825 EAVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRV  897 (1120)
Q Consensus       825 ~~v~~l~~s~d--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~  897 (1120)
                      .....++++|+  +..|.++. .+.|+.+|..++.... +.........+++++ +++++++....   . .+..++...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence            34678999984  44555555 5889999998766544 333455689999999 77755543321   1 133333222


Q ss_pred             cee-eEeecccccceEEEEEcc-CCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 DEV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 ~~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      +.. ...+. .......+++.+ +|.+.++-..++.|+.++..++.... .......  .   .....++|+|+|++|.+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEE
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEE
Confidence            111 01111 233456789999 67666666667889999887654311 1111111  1   12347999999996666


Q ss_pred             E--eCCeEEEEEcC--Cceee--ecccc----CC---------CCCCeeEEEE---------CCCCcEEEEEEcCCcEEE
Q 001224          976 V--HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCV 1027 (1120)
Q Consensus       976 ~--~d~~v~i~d~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~~~Dg~v~i 1027 (1120)
                      +  ..+.|..++..  ++...  ..+..    .+         .-.....+++         .++|.++++-...+.|+.
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            4  56789998765  23211  11110    01         1234677999         777777776666788999


Q ss_pred             EEcCCcceeeeeCCCc----ccCCC-C--CCCCccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1028 FSAANLKLRCRINPSA----YLPAG-V--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1028 wd~~~~~~~~~~~~~~----~~~~g-~--~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      ++. +|......-...    -...| .  ...--.|..++++|.++.++++-...+.|+.++++
T Consensus       370 ~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          370 LTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            984 565443322110    00011 0  01113477899996567777777777888888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00017  Score=87.11  Aligned_cols=259  Identities=12%  Similarity=0.048  Sum_probs=137.2

Q ss_pred             eeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCC-CeEEEEEecCCCcE
Q 001224          804 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNI  880 (1120)
Q Consensus       804 ~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~  880 (1120)
                      .+||+.+++..........+.....++++..+++.++.|+  +..+.+||..+.+-...-..+.. .-.+++..+ ++++
T Consensus       222 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~i  300 (656)
T 1k3i_A          222 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV  300 (656)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred             EEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeE
Confidence            4556555553322111111233345678889999999987  46799999876543222111111 123455666 7889


Q ss_pred             EEEEe-CC-----CcEEEEEeecceeeEee----cccccceEEEEEccCCCEEEEEeCCC---------CEEEEECCCcc
Q 001224          881 IAIGM-DD-----SSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWE  941 (1120)
Q Consensus       881 lasg~-~d-----g~v~vwd~~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~v~iWd~~~~~  941 (1120)
                      ++.|+ .+     ..+.+||..+++-...-    ......-....+..++..++.++.||         .+..||..+..
T Consensus       301 yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          301 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            99988 44     47999998775422210    00000000112234555556665554         46778877643


Q ss_pred             cccceeeeccCCC---CCCCCCCcEEEEcc-CCcEEEEE-eCC-----------eEEEEEcCCceeeeccccCCC-CCCe
Q 001224          942 KQKNRFLQIPTGR---TPTAQSDTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPI 1004 (1120)
Q Consensus       942 ~~~~~~~~~~~~~---~~~~~~i~~~~fsp-dg~~la~~-~d~-----------~v~i~d~~~~~~~~~~~~~~h-~~~v 1004 (1120)
                      ..  .........   ......-.++.|.. +++++++| .++           .+.+||..+............ ...-
T Consensus       381 w~--~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~  458 (656)
T 1k3i_A          381 DV--KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF  458 (656)
T ss_dssp             EE--EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS
T ss_pred             ee--ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc
Confidence            21  111111100   00001224455543 67777774 321           688888887665433200111 2233


Q ss_pred             eEEEECCCCcEEEEEEcC-----------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224         1005 THATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus      1005 ~~l~~s~dg~~l~s~~~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      .+++..|||++++.|+.+           ..+.+||..+.+-... ..   .+...    ...-.+...| |+++++.|+
T Consensus       459 ~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~-~~---~~~~R----~~hs~a~ll~-dg~v~v~GG  529 (656)
T 1k3i_A          459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP---NSIVR----VYHSISLLLP-DGRVFNGGG  529 (656)
T ss_dssp             CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC---CSSCC----CTTEEEEECT-TSCEEEEEC
T ss_pred             CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec-CC---CCCcc----ccccHhhcCC-CcEEEecCC
Confidence            456778899999999865           4689999988765432 11   11110    1111234456 689999998


Q ss_pred             C
Q 001224         1074 S 1074 (1120)
Q Consensus      1074 ~ 1074 (1120)
                      .
T Consensus       530 ~  530 (656)
T 1k3i_A          530 G  530 (656)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.0013  Score=73.20  Aligned_cols=217  Identities=10%  Similarity=-0.031  Sum_probs=129.9

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ....+.....+..++|++.+..|+.+-...+.|..+++..+....                   ++.........+++.+
T Consensus       108 ~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~  168 (386)
T 3v65_B          108 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDW  168 (386)
T ss_dssp             CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEET
T ss_pred             EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEe
Confidence            334444556789999999877777777778899999988664322                   1111223456789998


Q ss_pred             CCCeEE-EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEeecc
Q 001224          437 DGSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGH  514 (1120)
Q Consensus       437 dg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h  514 (1120)
                      .+..|. +-...+.|.+.++++.....   .+.........+++.|.+.. ++++-... +.|...++............
T Consensus       169 ~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~  244 (386)
T 3v65_B          169 VHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTH  244 (386)
T ss_dssp             TTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred             CCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECC
Confidence            655554 44556788888887654221   22333456789999998775 34444444 78888887644333333333


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      ......+++++.. +.+.++-+..+.|..+|++.......+.........++                     + ..+..
T Consensus       245 ~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gia---------------------v-~~~~l  301 (386)
T 3v65_B          245 LFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT---------------------V-FEDSL  301 (386)
T ss_dssp             CSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEE---------------------E-ETTEE
T ss_pred             CCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEE---------------------E-ECCEE
Confidence            3456778886543 24455555667888888765332222222222223333                     3 12234


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEe
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      +++-...+.|..++..+|+.+..+.
T Consensus       302 y~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          302 YWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEeeCCCCeEEEEECCCCcceEEEc
Confidence            4555567788888876776666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.00062  Score=75.96  Aligned_cols=206  Identities=10%  Similarity=-0.020  Sum_probs=131.9

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                      ...+..++|++.+..|....  .+.|..+++........+.........+++++.+++++++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            34578899998777777665  6889999988665444343333456788999845666666666778888887644333


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  977 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~  977 (1120)
                      ..+........+|++.|++..|..+.. . +.|...+++....  ..... ...     .....++++|++..|..+  .
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~-~~~-----~~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD-THL-----FWPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC-SSC-----SCEEEEEEEGGGTEEEEEETT
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE-CCC-----CCeeeEEEeCCCCEEEEEECC
Confidence            333334456789999987766655543 3 5677777765321  11111 111     234789999877766664  5


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+.|..+|+...... .+.. ........|++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus       267 ~~~I~~~d~dG~~~~-~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          267 HHVIERANLDGSHRK-AVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TTEEEEECTTSCSCE-EEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCeeE-EEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            678999998754332 2221 22456788888 345555555567889999977887776665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.08  E-value=0.0023  Score=70.16  Aligned_cols=216  Identities=10%  Similarity=-0.035  Sum_probs=128.9

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ....+.....+..++|++.+..|+.+-...+.|..+++..+....                   +..........+++.+
T Consensus        65 ~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~  125 (349)
T 3v64_C           65 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDW  125 (349)
T ss_dssp             EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEET
T ss_pred             eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-------------------EEeCCCCCccEEEEec
Confidence            334444556789999999877777777778899999988654322                   1111223457899998


Q ss_pred             CCCeE-EEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCC-CcEEEEECCCCceeEEe-ec
Q 001224          437 DGSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIF-EG  513 (1120)
Q Consensus       437 dg~~l-as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~-~~  513 (1120)
                      .+..| ++-...+.|.+.+.++.....   .+...-.....+++.|.+.. ++++-... +.|...++.. .....+ ..
T Consensus       126 ~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG-~~~~~~~~~  200 (349)
T 3v64_C          126 VHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDG-SGRRIIADT  200 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTS-CSCEESCCS
T ss_pred             CCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCC-CCcEEEEEC
Confidence            65555 444556789999988654221   22233456789999997775 44444444 7888888654 333333 22


Q ss_pred             cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          514 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       514 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      .......+++++.. +.+.++-...+.|..+|++.......+.........+++                      ..+.
T Consensus       201 ~~~~PnGla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav----------------------~~~~  257 (349)
T 3v64_C          201 HLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV----------------------FEDS  257 (349)
T ss_dssp             SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE----------------------ETTE
T ss_pred             CCCCcceEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE----------------------ECCE
Confidence            33456778886543 344555555678988888653322222222222233333                      1223


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEe
Q 001224          594 RFLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      .+++-...+.|..++..+|+....+.
T Consensus       258 ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          258 LYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEecCCCCeEEEEEccCCCccEEec
Confidence            34444566777777766666555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.05  E-value=0.0046  Score=66.73  Aligned_cols=224  Identities=11%  Similarity=0.034  Sum_probs=125.8

Q ss_pred             CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccCC---ceee
Q 001224          387 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR  462 (1120)
Q Consensus       387 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~~---~~~~  462 (1120)
                      ..|+..|+.+++....                   + ........++|+++++.|..+ ..++.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            6788889887654321                   1 123467899999976666555 45688999998862   2121


Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecC-CeE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI  541 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i  541 (1120)
                      .  .+...-.....+++.+.+.. ++++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222345688999876665 4566667889999997654433333333345677887543 33344443333 677


Q ss_pred             EEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEec
Q 001224          542 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDA  620 (1120)
Q Consensus       542 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  620 (1120)
                      ...+++.................                     +++++++..|+.+ +..+.|..+|++..........
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~g---------------------la~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~  204 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNG---------------------ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED  204 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEE---------------------EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEEcCCCCCeEEEEECCCCCceE---------------------EEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence            77776532211111112223334                     4455444445544 4567899999874333222222


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          621 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       621 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      .........+++. .+.++++-...+.|..++..++
T Consensus       205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            2222335677775 3555555556778888887666

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.04  E-value=0.0027  Score=71.03  Aligned_cols=208  Identities=6%  Similarity=-0.042  Sum_probs=132.6

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ...+..++|++.+..|....  .+.|+.+++...    .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999998777777765  578999998752    222333334456889999984566666666678899998875


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeC--CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      ......+........+|++.|.+.+|.....  .+.|...+++.....  ....  .+    ......+++++++..|..
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~----l~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN----IQWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC----CCceEEEEEEeCCCEEEE
Confidence            5433334434455789999997666665542  367888888763221  1111  11    124588999998877777


Q ss_pred             E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +  ..+.|..+|+....................|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            5  5678999998754433222221223456677773 33445555566889999988887776654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.00  E-value=0.012  Score=63.76  Aligned_cols=192  Identities=13%  Similarity=0.049  Sum_probs=111.7

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEE-EEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE-Ee--ecce
Q 001224          825 EAVPCFALSKNDSYVMSASGGKIS-LFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY-NV--RVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~-vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw-d~--~~~~  899 (1120)
                      ..+..+.+.++++.++++.++.|. -.|  .++.-. ........+..+++.+ ++.+++++. +|.++.- |-  .+.+
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~  197 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE  197 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence            346678877778777777666542 222  222221 2233456789999999 788887664 4555443 31  2233


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  979 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~  979 (1120)
                      .+.  ......+..+++.+++..++ ++.+|.+++++.+.++.  ...+...  .......+..+++.+++..++++.++
T Consensus       198 ~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          198 PHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             EEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             ECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCC
Confidence            332  23456788999999887665 45578777765332221  0111111  00111246888999999988888888


Q ss_pred             eEEEEEcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEE
Q 001224          980 QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1029 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd 1029 (1120)
                      .+ .+..+.++--..+.. ..+...+.++.|.++++ +++++.+|.|.-++
T Consensus       271 ~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          271 AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            77 444554543322221 12245688899986665 55566789777665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.96  E-value=0.0017  Score=68.94  Aligned_cols=196  Identities=9%  Similarity=0.151  Sum_probs=126.3

Q ss_pred             CCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCC----c---EEEEEe-C--CCcEEEEEee--cceee
Q 001224          835 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGM-D--DSSIQIYNVR--VDEVK  901 (1120)
Q Consensus       835 d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~-~--dg~v~vwd~~--~~~~~  901 (1120)
                      ...+++... .+.+.+||+ +++.++.+..  +.++.+..-| +-    +   ++++.. .  +++|.+|++.  +++ +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            334444433 678999999 7888888863  5678887776 32    1   233333 3  5789999884  333 4


Q ss_pred             Eeecc------cc-cceEEEEE--ccC-CC-EEEEEeCCCCEEEEECCC---cccccceeeeccCCCCCCCCCCcEEEEc
Q 001224          902 SKLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFH  967 (1120)
Q Consensus       902 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~v~iWd~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~fs  967 (1120)
                      ..+..      .. ..+..+|+  ++. ++ +++....+|.+..|++..   +.. ..+.+..+...    ..+..++..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvD  188 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAAD  188 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEc
Confidence            44421      11 56777888  664 44 677888899999999843   212 22233333221    357889999


Q ss_pred             cCCcEEEEE-eCCeEEEEEcC-----CceeeeccccCCCCCCeeEEEE--CCCCc-EEEEEE-cCCcEEEEEcC-Cccee
Q 001224          968 QDQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1036 (1120)
Q Consensus       968 pdg~~la~~-~d~~v~i~d~~-----~~~~~~~~~~~~h~~~v~~l~~--s~dg~-~l~s~~-~Dg~v~iwd~~-~~~~~ 1036 (1120)
                      +...+|.++ .+..|..|+.+     +++.+..+....-...+..|++  .++++ ||++.+ .+.+..|||.. +.+.+
T Consensus       189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            988888887 55567777754     3455544432222347888888  56666 777666 56799999996 78888


Q ss_pred             eeeC
Q 001224         1037 CRIN 1040 (1120)
Q Consensus      1037 ~~~~ 1040 (1120)
                      ..+.
T Consensus       269 g~f~  272 (355)
T 3amr_A          269 ADFR  272 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.94  E-value=0.00034  Score=84.50  Aligned_cols=242  Identities=12%  Similarity=0.030  Sum_probs=137.9

Q ss_pred             EEEEcc-CCCEEEEEe-CC-----------cEEEEEcCCCce--eeeecC-CCCCeEEEEEecCCCcEEEEEe-CCCcEE
Q 001224          829 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKT--MATFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ  891 (1120)
Q Consensus       829 ~l~~s~-d~~~l~~~s-dg-----------~i~vwd~~~~~~--~~~~~~-~~~~i~~l~~sp~d~~~lasg~-~dg~v~  891 (1120)
                      ++++.+ +++.++.|+ +.           .+.+||..+++.  +..+.. +.....++++.+ +++++++|+ .+..++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            567777 888888876 21           488999887653  222322 233344577778 889999988 455899


Q ss_pred             EEEeecceee--EeecccccceEEEEEccCCCEEEEEe-CC-----CCEEEEECCCccccccee---eeccCCCCCCCCC
Q 001224          892 IYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQS  960 (1120)
Q Consensus       892 vwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s-~D-----g~v~iWd~~~~~~~~~~~---~~~~~~~~~~~~~  960 (1120)
                      +||..+++-.  ..+..... -.++++.++|++++.|+ .+     ..+.+||..+.+-.....   .......      
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------  341 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------  341 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC------
T ss_pred             EecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc------
Confidence            9998876432  22222111 12455667999999998 44     468999998754211000   0000000      


Q ss_pred             CcEEEEccCCcEEEE----------EeCCeEEEEEcCCceeeeccccCC-------CCCCeeEEEEC-CCCcEEEEEEcC
Q 001224          961 DTRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLD 1022 (1120)
Q Consensus       961 i~~~~fspdg~~la~----------~~d~~v~i~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~~~D 1022 (1120)
                       ...++..+++.++.          +....+..||..+...........       ....-.++.|. .++++++.|+.+
T Consensus       342 -~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~  420 (656)
T 1k3i_A          342 -KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  420 (656)
T ss_dssp             -TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             -ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence             00112233333333          234567889988765433221110       01123444553 478888888854


Q ss_pred             C-----------cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----------CcEEE
Q 001224         1023 A-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHV 1080 (1120)
Q Consensus      1023 g-----------~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----------g~v~v 1080 (1120)
                      +           .|.+||..+..-....  ....+...    .. -+++..| |+++++.|+.+           ..+.+
T Consensus       421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R----~~-~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~  492 (656)
T 1k3i_A          421 DYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFAR----TF-HTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEI  492 (656)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCC----BS-CEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred             CCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCc----cc-CCeEECC-CCCEEEECCcccCcCcCCCCcccceEE
Confidence            3           6888888877654332  01122221    11 1445566 58899999865           56899


Q ss_pred             EecCCCC
Q 001224         1081 FEPLESE 1087 (1120)
Q Consensus      1081 W~~~~~~ 1087 (1120)
                      ||+.+.+
T Consensus       493 ydp~t~~  499 (656)
T 1k3i_A          493 YVPEQDT  499 (656)
T ss_dssp             EEGGGTE
T ss_pred             EcCCCCc
Confidence            9998755

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=0.0034  Score=70.92  Aligned_cols=255  Identities=11%  Similarity=0.087  Sum_probs=136.4

Q ss_pred             CCceEEEEec-CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          365 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       365 ~~v~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      .....|+|+| ++..|+++-. .+.|+.+|+.+++...                    +.........|+|+++|++|.+
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII  195 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence            4678999998 4554455444 3889999998765432                    1223456889999999996666


Q ss_pred             EECC----C-eEEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEeec-ccc
Q 001224          444 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA  516 (1120)
Q Consensus       444 ~~~d----g-~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~  516 (1120)
                      +...    . .+.+.+.. +.... ...+. .......++++| +|.  ++++-..++.|..++..++........ ...
T Consensus       196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            6542    2 33334433 32221 11222 123467788999 555  566666778999999887664222221 123


Q ss_pred             CeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCC----ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEc--
Q 001224          517 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD--  589 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~--  589 (1120)
                      .-..++|++  +++ ++++-...+.|..++.+....    ...+......-   .+ .+|. .....-..+...+++.  
T Consensus       271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~---g~-~dg~-~~~a~~~~P~~gv~v~~~  343 (430)
T 3tc9_A          271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK---DW-VDGV-GKKARMHAPRQGTFVKNP  343 (430)
T ss_dssp             CCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB---CC-BCEE-GGGCBBSSEEEEEEEECG
T ss_pred             cceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC---CC-CCCC-CcceEeCCCcceEEEccc
Confidence            456788754  446 445555678898887764211    11111100000   00 0000 0000000111134442  


Q ss_pred             ------CCCCEEEEEeCCCeEEEEECCCCceeEEEec---------CC------CCCCcCeEEEcCC-CCEEEEEECCCc
Q 001224          590 ------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTNDNG  647 (1120)
Q Consensus       590 ------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~dg~  647 (1120)
                            +++..+++-...+.|+.++. +|........         .+      .......++++++ +.++++-..++.
T Consensus       344 ~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  422 (430)
T 3tc9_A          344 AYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR  422 (430)
T ss_dssp             GGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             cccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence                  34555555556778888883 4543333221         00      0224568999995 555555555677


Q ss_pred             EEEEEc
Q 001224          648 IKILAT  653 (1120)
Q Consensus       648 i~iwd~  653 (1120)
                      |+.+++
T Consensus       423 Ir~i~~  428 (430)
T 3tc9_A          423 IRKIGY  428 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            887765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.86  E-value=0.0031  Score=71.21  Aligned_cols=253  Identities=13%  Similarity=0.124  Sum_probs=136.7

Q ss_pred             CCceEEEEecC--CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          365 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       365 ~~v~~v~~spd--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      .....|+|+|+  +..|+++ ...+.|+.+|..+++...                    +.........++|+++|++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            35679999995  3334444 333899999998776543                    222345689999999999444


Q ss_pred             EEECC---Ce-EEEEEccCCceeeeeeeecccccCeEEEEEcC-CCCceEEEEecCCCcEEEEECCCCceeEEe-ec-cc
Q 001224          443 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE  515 (1120)
Q Consensus       443 s~~~d---g~-v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~-h~  515 (1120)
                      +....   .. +...+...+....  ..+. .-.....+++.| +|.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            43311   22 3333333322110  0111 223456788999 565  5566667788999998877763333 21 11


Q ss_pred             cCeEEEeeccCCCce-EEEEEecCCeEEEEecCCCCCc----eeeeCC-CCceeEEEEcCCCCeEEecccccceeEEEE-
Q 001224          516 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSR----VDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF-  588 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~-  588 (1120)
                      ..-..+++++  ++. +.++-...+.|+.++.+.....    ..+... ...    .+ .+|.  .....-.....+++ 
T Consensus       273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~-~dg~--~~~a~~~~P~giav~  343 (433)
T 4hw6_A          273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GW-VDGM--GTGARLWGPNQGIFV  343 (433)
T ss_dssp             SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC----CC-BCEE--GGGSBCSSEEEEEEE
T ss_pred             CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC----cc-CCCc--ccceEEcCCccEEEE
Confidence            2234577754  445 4445555688998887632111    111110 000    00 0000  00000012334666 


Q ss_pred             --------cCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC----------------CCCcCeEEEc-CCCCEEEEEE
Q 001224          589 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST  643 (1120)
Q Consensus       589 --------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~  643 (1120)
                              +++++.+++-...+.|+.++. +|. +..+.+...                ......++++ ++|.++++-.
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             ccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence                    566666666667788888885 453 333322211                1235578888 5666665555


Q ss_pred             CCCcEEEEEcc
Q 001224          644 NDNGIKILATS  654 (1120)
Q Consensus       644 ~dg~i~iwd~~  654 (1120)
                      .++.|+.++++
T Consensus       422 ~n~rIr~i~~e  432 (433)
T 4hw6_A          422 DNHRVRKIAPE  432 (433)
T ss_dssp             GGTEEEEEEEC
T ss_pred             CCCEEEEEecC
Confidence            66778877653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.85  E-value=0.0028  Score=68.27  Aligned_cols=228  Identities=11%  Similarity=0.021  Sum_probs=139.4

Q ss_pred             EEEEEeCCcEEEEEcCCCce-eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee-EeecccccceEEEE
Q 001224          838 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA  915 (1120)
Q Consensus       838 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~  915 (1120)
                      +|+.+....|+.+++..... ...+......+.+++|++.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            45555567799999886531 11111122357789999855666666667788999988765321 22222234567889


Q ss_pred             EccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEe---CCeEEEEEcCCcee
Q 001224          916 FSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC  991 (1120)
Q Consensus       916 ~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~---d~~v~i~d~~~~~~  991 (1120)
                      +.+.+. +.++-...+.|.+++++....   ..+.....     .....+++.|.+..|..+.   .+.|..+++.....
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~l~~~~~-----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLR---KVLFWQEL-----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSC-----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcE---EEEEeCCC-----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            987544 445555677899999876322   11111111     2458899999766665542   46788888764322


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEE
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1070 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~ 1070 (1120)
                       ..+.. ..-.....|+|+++++.|+.+. ..+.|..+|++.......+.       +   ..-.|..+++..  +.+++
T Consensus       158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~lyw  223 (318)
T 3sov_A          158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DILYW  223 (318)
T ss_dssp             -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEEEE
T ss_pred             -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEEEE
Confidence             22221 1134678999999877776664 45789999987543322221       1   112345677753  46677


Q ss_pred             EEeCCCcEEEEecCCCC
Q 001224         1071 LGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1071 s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +-...+.|..++..+|+
T Consensus       224 td~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          224 TDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EETTTTEEEEEETTTCC
T ss_pred             EecCCCeEEEEECCCCC
Confidence            77777899999987777

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.82  E-value=0.00021  Score=86.32  Aligned_cols=207  Identities=6%  Similarity=-0.046  Sum_probs=125.7

Q ss_pred             CCccEEEEccCCCEEEEEe--CCcEEEEEcCC----CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  898 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  898 (1120)
                      ..+..++|++.+..|....  .+.|+.+++.+    ......+.........|++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4567889998888877775  57899999875    22222222222345678888645666666566789999997754


Q ss_pred             eeeEeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          899 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       899 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      .....+.........|++.|++.+|..+.. . +.|.+.+++....  ..... ...     .....|+|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~l-----~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence            433333333345678999987665554443 2 6777777765221  11111 111     235789999987666654


Q ss_pred             --eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          977 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       977 --~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                        ..+.|..+++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              567899999875433222211112234455666443 444455566889999999998887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.81  E-value=0.013  Score=65.32  Aligned_cols=227  Identities=10%  Similarity=0.010  Sum_probs=129.0

Q ss_pred             CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEccCCceee-e
Q 001224          386 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGGDEVR-Q  463 (1120)
Q Consensus       386 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~~~~~~~~-~  463 (1120)
                      ...|+..++.......                    +......+..|+|++.+..|..+ ...+.|..+++.+..... .
T Consensus        91 ~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~  150 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY  150 (400)
T ss_dssp             TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred             cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence            3788888887654332                    22234578999999976666655 456789889887632100 0


Q ss_pred             eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEec-CCeEE
Q 001224          464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIK  542 (1120)
Q Consensus       464 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~  542 (1120)
                      ...+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+.. +.+.++-.. .+.|.
T Consensus       151 ~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~  228 (400)
T 3p5b_L          151 DTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK  228 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEE
T ss_pred             eEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEE
Confidence            1122223456788999986665 55666677899999987655444444344456778876543 334444322 36777


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecC
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDAD  621 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  621 (1120)
                      ..+++...........-.....++++                     +++..|+.+ ...+.|..+|++...........
T Consensus       229 ~~~~dG~~~~~~~~~~l~~P~glavd---------------------~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          229 KGGLNGVDIYSLVTENIQWPNGITLD---------------------LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEE---------------------TTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred             EEeCCCCccEEEEECCCCceEEEEEE---------------------eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence            77776433222222222334444444                     444445554 45678999998654433333322


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      ........+++. .+.++++-...+.|..++..++
T Consensus       288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            222334566663 3445555556778888886666

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0056  Score=69.07  Aligned_cols=253  Identities=8%  Similarity=0.006  Sum_probs=145.2

Q ss_pred             CccEEEEcc-CCCEEEEEe--CCcEEEEEcCCCceeeeecCC---CCCeEEEEE-------ecCCCcEEEEEeCCC-c--
Q 001224          826 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS-S--  889 (1120)
Q Consensus       826 ~v~~l~~s~-d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg-~--  889 (1120)
                      ....|+|+| +...|.++.  .+.|++.|++++.........   ......++|       ++ +++.|+++...+ .  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467899998 455555554  367999999876665444322   235899999       99 777555555443 2  


Q ss_pred             ----EEEEEeec-ceee-----EeecccccceEEEEEccC-CCEEEEEeCCCCEEEEECC-------Cccc------c--
Q 001224          890 ----IQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q--  943 (1120)
Q Consensus       890 ----v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~-------~~~~------~--  943 (1120)
                          |.+++... ++..     ..+.. .....+++++|+ +.++++-..++.|..+|++       ++..      .  
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence                66665443 2221     12221 123457889995 5555566677889999987       4432      0  


Q ss_pred             --cceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--Cceee--eccc----cCCC---------CC
Q 001224          944 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA 1002 (1120)
Q Consensus       944 --~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~--~~~~~--~~~~----~~~h---------~~ 1002 (1120)
                        ..........     .....++|+|+|++|.++  ....|+.++..  ++...  ..+.    ..++         -.
T Consensus       298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence              0112222221     235799999999965554  56788886543  33210  1111    1111         12


Q ss_pred             Cee-EEEEC-------CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcc-------c----CCC---CCCCCccceEEE
Q 001224         1003 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-------L----PAG---VSSSNVHPLVIA 1060 (1120)
Q Consensus      1003 ~v~-~l~~s-------~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~-------~----~~g---~~~~~v~~~~i~ 1060 (1120)
                      ... .++..       ++|.++++=.....|+.++ .+|... .+.....       .    ..|   ....--.|..|+
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            344 45554       4566666666778899998 566433 3321100       0    011   011113477899


Q ss_pred             ecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1061 AHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1061 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++++++.++++=.....|+.+++....
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            998436666766677889999887655

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.75  E-value=0.0086  Score=72.59  Aligned_cols=207  Identities=7%  Similarity=-0.055  Sum_probs=128.5

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCC----ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ...+..+++++.+..|....  .+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            45577899998777776665  578999998752    222333334456788999984556666666778999999875


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEeC-C-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      ......+........+|++.|.+.+|..+.. . +.|.+.+++....  ...+   ...   ......|++++.+..|..
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv---~~~---l~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLV---TEN---IQWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEE---CSS---CSCEEEEEEETTTTEEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEE---eCC---CCCceEEEEecCCCeEEE
Confidence            4433333334456889999998666665543 2 6688888776322  1111   111   124588999987777766


Q ss_pred             E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +  ....|..+++..............-....+|++.  +.+|+.+. ..+.|...+..+|+.+..+.
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            4  5568999998655443333221223345667763  34555444 55788888887876665553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.73  E-value=0.012  Score=63.27  Aligned_cols=210  Identities=10%  Similarity=0.005  Sum_probs=123.3

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE-EE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV  443 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as  443 (1120)
                      ..+.+++|++.+..|+.+-...+.|..+++..+.....                  ++...-.....+++.+.+..| ++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~   96 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT   96 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence            46779999997776777777788999999876532110                  011122356789999855544 45


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe-eccccCeEEEe
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC  522 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~  522 (1120)
                      -...+.|.+++.++.....   .+.........+++.|.+..+|+.-.+..+.|...++.. .....+ ...-..-..++
T Consensus        97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A           97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEE
T ss_pred             ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEE
Confidence            4566889999988653221   122344567899999977653332223467888888653 333333 22234457788


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      +++.. +.+.++-+..+.|..+|++.................++                     +. .+..+.+-...+
T Consensus       173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla---------------------v~-~~~lywtd~~~~  229 (318)
T 3sov_A          173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT---------------------LF-EDILYWTDWSTH  229 (318)
T ss_dssp             EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE---------------------EE-TTEEEEEETTTT
T ss_pred             EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE---------------------Ee-CCEEEEEecCCC
Confidence            86533 34445555678898888864332222211122222333                     22 112344555677


Q ss_pred             eEEEEECCCCceeEEEe
Q 001224          603 SIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~  619 (1120)
                      .|..++..+|+....+.
T Consensus       230 ~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          230 SILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTTCCSCEEEE
T ss_pred             eEEEEECCCCCceEEEe
Confidence            88888887777655554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.0064  Score=68.60  Aligned_cols=254  Identities=8%  Similarity=0.020  Sum_probs=139.0

Q ss_pred             ccEEEEEEcC-CCceEEEecc-CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEE---
Q 001224          758 TKISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---  832 (1120)
Q Consensus       758 ~~i~~l~~s~-~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~---  832 (1120)
                      .....++|+| ++..|+.+.. .+.|++.|+                      .++.+....-.+.........++|   
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~  196 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKK  196 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCC
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeec
Confidence            3567889998 3444555544 355555554                      333222211111012345788999   


Q ss_pred             ----ccCCCEEEEEe-CC-c------EEEEEcCC-Ccee-----eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          833 ----SKNDSYVMSAS-GG-K------ISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       833 ----s~d~~~l~~~s-dg-~------i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                          +++|++|+++. .+ .      |.+++... +...     ..+. .......++++|+++.++++-..++.|+.+|
T Consensus       197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d  275 (496)
T 3kya_A          197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLD  275 (496)
T ss_dssp             BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred             ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence                99999777776 32 2      66665443 2221     1221 1123467889996667777777888999999


Q ss_pred             ee-------ccee-----------eEee-c-ccccceEEEEEccCCCEE-EEEeCCCCEEEEECCCcccc--cceeeecc
Q 001224          895 VR-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQ--KNRFLQIP  951 (1120)
Q Consensus       895 ~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd~~~~~~~--~~~~~~~~  951 (1120)
                      +.       ++..           ...+ . +....-..|+|+|+|++| ++-...+.|+.++.+.....  ....+.-.
T Consensus       276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            97       4443           1121 1 122345789999999964 44455677888665432110  00111111


Q ss_pred             ---CCCCC------CCCCCc-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCceeeeccccC------------C--
Q 001224          952 ---TGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--  999 (1120)
Q Consensus       952 ---~~~~~------~~~~i~-~~~fs-------pdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~------------~--  999 (1120)
                         .+...      ...... .++..       ++|.+.++ .....|+.++ .++. +.++...            +  
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCC
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccC
Confidence               11110      001223 34444       45665555 4678899998 4453 3233211            1  


Q ss_pred             --------CCCCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCccee
Q 001224         1000 --------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1036 (1120)
Q Consensus      1000 --------h~~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~ 1036 (1120)
                              .-.....|+++++ |.++++=.....|+.++++.....
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                    1234778999987 666665556678998888765554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.57  E-value=0.024  Score=68.71  Aligned_cols=174  Identities=6%  Similarity=-0.103  Sum_probs=106.1

Q ss_pred             eeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC
Q 001224          357 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  436 (1120)
Q Consensus       357 ~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  436 (1120)
                      ...++.....+.+|+|++.+..|+.+-...+.|+.+++.........               ..++.........|++.+
T Consensus       416 ~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~---------------~~vi~~~l~~P~GLAvD~  480 (791)
T 3m0c_C          416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------DTVISRDIQAPDGLAVDW  480 (791)
T ss_dssp             CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------EEEECSSCSCCCEEEEET
T ss_pred             ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce---------------eEEEecCCCCcceeeeee
Confidence            34445556778899999977767777777788998888753210000               001222344677899998


Q ss_pred             CCCeEEEE-ECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          437 DGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       437 dg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      .++.|..+ ...+.|.+.++++.....   .+...-.....|++.|.+..+|++-.+..+.|.+.++........+....
T Consensus       481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~---l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          481 IHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             cCCcEEEEecCCCeEEEEeCCCCeEEE---EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence            77655554 556889999998654322   12233456889999998775444333444789999876444433333334


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCC
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  549 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  549 (1120)
                      .....|++.+.. +.+.++-...+.|...+++..
T Consensus       558 ~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          558 QWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             SCEEEEEEETTT-TEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEecCC-CeEEEEeCCCCcEEEEecCCC
Confidence            567778876543 334444445677888887653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.48  E-value=0.013  Score=62.18  Aligned_cols=190  Identities=12%  Similarity=0.133  Sum_probs=117.4

Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccC----CC---EEE-EEeC--CCCEEEEECCCccccccee
Q 001224          878 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRF  947 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~-s~s~--Dg~v~iWd~~~~~~~~~~~  947 (1120)
                      ..+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+    |+   +++ +.-.  +++|.+|+++.....    
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence            345555566788999999 8888888864  56777776653    22   223 3333  578999988532211    


Q ss_pred             eeccCCC--C--CCCCCCcEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCceeeeccccCCCCCCeeEEEECC
Q 001224          948 LQIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSC 1011 (1120)
Q Consensus       948 ~~~~~~~--~--~~~~~i~~~~f--spd-g~-~la~-~~d~~v~i~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~ 1011 (1120)
                      +......  .  .....+..+|+  +|. ++ ++++ ..++.+..|++       .+.+.++.+..   .+.+..+...+
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd  189 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADD  189 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEET
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcC
Confidence            2222110  0  00135677888  774 54 3444 57899999988       34567777765   45788999999


Q ss_pred             CCcEEEEEEcCCcEEEEEcC-----CcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEe-CCCcEEEEecC
Q 001224         1012 DSQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1084 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~v~iwd~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~-~Dg~v~vW~~~ 1084 (1120)
                      ...+|+.+-+|.-|..++..     +++++..+.      .++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence            99999999999766666654     345555443      12111124433343344 344 555555 67899999986

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.46  E-value=0.19  Score=54.40  Aligned_cols=236  Identities=14%  Similarity=0.147  Sum_probs=152.9

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEee
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKL  904 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l  904 (1120)
                      ...+.-++|..+.+|.-...++.+||+++.+.+..+.-. ..|.-=.|-.  .+.|+..+ +..|+-|++.. ....+.+
T Consensus        67 ~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           67 SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             CCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             ccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhe
Confidence            345677889999898888889999999998888776633 3566666664  34566554 56899999974 3455556


Q ss_pred             cccc----cceEEEEEccCCCEEEEEeC-------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC---
Q 001224          905 KGHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---  970 (1120)
Q Consensus       905 ~~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg---  970 (1120)
                      .-|.    ..|..-..++|.+|++..|-       .|.+.+|.++.+      .-+..+||..     .-..+-.+|   
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~  211 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAE  211 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC------CEEEECCSEE-----EEEEEECTTCSS
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc------ccchheeeee-----eeEEEecCCCCC
Confidence            5543    45777778899999875442       367889998873      3445555532     112222222   


Q ss_pred             --cEEEEEeC----CeEEEEEcCCc---------eeeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          971 --IHFLVVHE----TQLAIFETTKL---------ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       971 --~~la~~~d----~~v~i~d~~~~---------~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                        ..++.+..    ++++|-++...         +.+..+. ++.-.+-.-++..|+.-..++..+.-|.|++||+.|+.
T Consensus       212 ~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          212 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence              23333422    68999888542         1111112 22235556788888888888889999999999999999


Q ss_pred             eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1035 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1035 ~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+.+-.    +.    ...++  ..+.... ..=++.....|.|.--.+.+..
T Consensus       292 ~i~~nr----Is----~~~iF--~t~~~~~-~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          292 CIYMNR----IS----GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEEE----CC----SSCEE--EEEEETT-TTEEEEEETTCEEEEEEECTTT
T ss_pred             eeeeec----cc----CCceE--EecccCC-CCcEEEEccCceEEEEEEcccc
Confidence            998755    22    22244  3333332 3345555588888777776654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.41  E-value=0.073  Score=58.09  Aligned_cols=232  Identities=11%  Similarity=0.101  Sum_probs=124.4

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCc-eeeeec---CCCCCeEEEEEecC---CCcEEEEEeC---C----CcE
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI  890 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v  890 (1120)
                      .....++|.|||+++++-.+|.|++++. +++ .+..+.   ........|+++|+   ++.+.++-..   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3467899999998666655899999974 443 222221   12356899999993   3555444332   3    567


Q ss_pred             EEEEeecc-------ee-eEeecc-cccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCcccc-----
Q 001224          891 QIYNVRVD-------EV-KSKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ-----  943 (1120)
Q Consensus       891 ~vwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~~~-----  943 (1120)
                      ..|+....       +. +..+.. .......|+|.|||.+.++.+..             |.|.-.+.+..-..     
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776543       11 111221 11124679999999877775432             23433333321000     


Q ss_pred             cceeeeccCCCCCCCCCCcEEEEcc-CCcEEEE--EeCC--eEEEEEcCCcee----------------eeccccCCCCC
Q 001224          944 KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLEC----------------VKQWVPRESSA 1002 (1120)
Q Consensus       944 ~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~--~~d~--~v~i~d~~~~~~----------------~~~~~~~~h~~ 1002 (1120)
                      .....  ..++    .....++|+| +|.+.++  +.+.  .|.+..  .+.-                ...+.......
T Consensus       188 ~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~  259 (354)
T 3a9g_A          188 NSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETW  259 (354)
T ss_dssp             TCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred             CCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence            00111  1122    1357899999 6776666  2222  343332  2220                00011101134


Q ss_pred             CeeEEEEC-------CCCcEEEEEEcCCcEEEEEcCCc-ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224         1003 PITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus      1003 ~v~~l~~s-------~dg~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      .+..++|.       .+|.++++....+.|...++... +.....   .++. +   ..-.+..+++.| ||.+.++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~---~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-N---VFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence            67888884       57777777666778888888753 332111   1111 1   113456899999 676666654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.40  E-value=0.034  Score=60.77  Aligned_cols=232  Identities=13%  Similarity=0.088  Sum_probs=119.8

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCce--eeeec---CCCCCeEEEEEecCC----CcEEEEEeCC-----CcE
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSI  890 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v  890 (1120)
                      .....++|.|||+++++-.+|.|++++  +++.  +..+.   ........|+|+| +    +.+.++-...     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence            346789999999966665589999998  3332  22221   1245689999999 5    4444444332     678


Q ss_pred             EEEEeecc-----e-eeEeec---ccccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCccc------
Q 001224          891 QIYNVRVD-----E-VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEK------  942 (1120)
Q Consensus       891 ~vwd~~~~-----~-~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~~------  942 (1120)
                      ..|+...+     + .+..+.   +.......|+|.|||.+.++.+..             |.|.-++.+..-.      
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            88887643     1 122233   111123689999999877765432             3344444432000      


Q ss_pred             ----ccceeeeccCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeE------EEEEcCCcee----------------eec
Q 001224          943 ----QKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQL------AIFETTKLEC----------------VKQ  994 (1120)
Q Consensus       943 ----~~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~~-~d~~v------~i~d~~~~~~----------------~~~  994 (1120)
                          ......  ..++    .....++|+| +|.+.++- ....+      .|.-+..+.-                ...
T Consensus       188 ~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          188 GRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                000010  0111    1246789999 67766662 22221      2332232320                000


Q ss_pred             cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee-eeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEe
Q 001224          995 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1073 (1120)
Q Consensus       995 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~ 1073 (1120)
                      +.. .+......++| .+|.++++....+.|...+++...... ......++. .    .-.+..+++.| ||.++++..
T Consensus       262 ~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~----~~rp~~v~~~p-dG~lyv~~~  333 (352)
T 2ism_A          262 YFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G----FGRLREVQVGP-DGALYVTTS  333 (352)
T ss_dssp             EEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S----SCCEEEEEECT-TSCEEEEEC
T ss_pred             Eec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c----CCCeeEEEECC-CCcEEEEEe
Confidence            111 12335677888 567766666566778877776543210 000011111 1    12456899998 576665553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.39  E-value=0.001  Score=80.22  Aligned_cols=223  Identities=6%  Similarity=-0.101  Sum_probs=121.2

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ....++.....+..|+|++++..|+++-...+.|..+++.+...... .              ..++.........|++.
T Consensus       397 ~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~--------------~~~i~~~~~~P~glavD  461 (699)
T 1n7d_A          397 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-Y--------------DTVISRDIQAPDGLAVD  461 (699)
T ss_dssp             CEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-C--------------CCBCCSCC--CCCEECC
T ss_pred             cceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-e--------------EEEEeCCCCCcceEEEE
Confidence            34444445567889999998876666656678899998875110000 0              00111112235568888


Q ss_pred             CCCC-eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224          436 PDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  514 (1120)
Q Consensus       436 pdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  514 (1120)
                      +.+. ++++-...+.|.+.++.+.....   .+.........|++.|.+..+|++-.+..+.|.+.++........+...
T Consensus       462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          462 WIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             CSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred             eeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence            6544 44444556789999988654222   1222234567889999777533322223378888876533222222222


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCC--CCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ......|++.+.. +.+.++-+..+.|..++++.......+...  ......                     +++..+ 
T Consensus       539 l~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g---------------------lavd~~-  595 (699)
T 1n7d_A          539 IQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS---------------------LAVFED-  595 (699)
T ss_dssp             CSSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC---------------------CEEETT-
T ss_pred             CCCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE---------------------eEEECC-
Confidence            2334567775543 345555556778988888643222111110  011111                     222222 


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEe
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      ..+++....+.|..++..+++.+..+.
T Consensus       596 ~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          596 KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            234455567889999988888776664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.37  E-value=0.027  Score=59.29  Aligned_cols=203  Identities=11%  Similarity=0.063  Sum_probs=123.3

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeee-ecC----CC--CCeEEEEE---ecCCCcEEEEEeC-----
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD-----  886 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---sp~d~~~lasg~~-----  886 (1120)
                      ..-..+++|.+....+..++  .++|..|+...+..... +..    ..  ..+..|.|   .| +++++++...     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence            33456789988666666666  89999999976544333 222    11  13578999   68 6888886442     


Q ss_pred             --------CCcEEEEEee---cceeeEeec--ccc-----------cceEEEEEccCCCEEEEEeCC-CCEEEEECCCcc
Q 001224          887 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE  941 (1120)
Q Consensus       887 --------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~~~~  941 (1120)
                              +..|..||+.   +++.+....  ...           .....++..++|+..++++.- +.|...+.+.. 
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence                    6789999999   777664433  211           247899999999999988877 76665555542 


Q ss_pred             cccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccC--C---CCCCeeEE-EECCCCc
Q 001224          942 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--E---SSAPITHA-TFSCDSQ 1014 (1120)
Q Consensus       942 ~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~--~---h~~~v~~l-~~s~dg~ 1014 (1120)
                      ......+.....  ......+.++++|+|..|++. ..+.+..+|+.+-... .+...  +   .......| ..-.+|+
T Consensus       170 ~~~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          170 TVSTFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             CEEEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             EEeeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence            111111111111  111346799999999988884 5889999998843220 11111  1   11223343 3334777


Q ss_pred             E-EEEEEcCCcEEEEEcC
Q 001224         1015 L-VYACFLDATVCVFSAA 1031 (1120)
Q Consensus      1015 ~-l~s~~~Dg~v~iwd~~ 1031 (1120)
                      . |++.+..+.+.+.+.+
T Consensus       247 vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEEEEETTEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEECCC
Confidence            7 4455556655555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.18  E-value=0.14  Score=55.79  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  439 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~  439 (1120)
                      .-...+.|+|.|||+ ++++ ..+|.|.+++  +++.....     ++.         +..........|+|+||   +.
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence            345678999999998 4544 5669999998  44321100     000         11222456889999998   55


Q ss_pred             eEEEEEC-C-----CeEEEEEccCCce--eeeee-eec---ccccCeEEEEEcCCCCceEEEEe
Q 001224          440 LFGVAYS-R-----HIVQIYSYHGGDE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC  491 (1120)
Q Consensus       440 ~las~~~-d-----g~v~iwd~~~~~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~  491 (1120)
                      +|..+.. .     +.|..|+...+..  .+... .+.   +.......++|.|||.  ++++.
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            5555433 2     6788888775421  11111 122   1111336899999996  44443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.15  E-value=0.099  Score=57.07  Aligned_cols=241  Identities=11%  Similarity=0.090  Sum_probs=126.2

Q ss_pred             CccEEEEccCCC-EEEEEeCCcEEEEEcCCCcee---eee----cCCCCCeEEEEEecC---CCcEEEEEeC-------C
Q 001224          826 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D  887 (1120)
Q Consensus       826 ~v~~l~~s~d~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d  887 (1120)
                      ....++|.|+|+ ++++-..|.|++++.. +...   ..+    .........++++|+   ++.+.++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999999 6655558999999854 3221   111    112345789999993   3544444332       2


Q ss_pred             CcEEEEEeecc-------eee-Eeec-----ccccceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCcc
Q 001224          888 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE  941 (1120)
Q Consensus       888 g~v~vwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~  941 (1120)
                      ..|..|++..+       +.+ ..+.     .|.  -..|+|.|||.+.++.+..             |.|.-.+.+..-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            35666666432       111 1121     132  3579999999766665432             345555544310


Q ss_pred             cc----------cceeeeccCCCCCCCCCCcEEEEcc-CCcEEEEE--eCCeEEEEEcCCceee----------------
Q 001224          942 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECV----------------  992 (1120)
Q Consensus       942 ~~----------~~~~~~~~~~~~~~~~~i~~~~fsp-dg~~la~~--~d~~v~i~d~~~~~~~----------------  992 (1120)
                      ..          ......  .++    .....++|+| +|.+.++-  .++.=.|.-+..+.-.                
T Consensus       176 p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            00          000110  111    1357899999 67666662  2222223222222110                


Q ss_pred             --------eccccC----CCCCCeeEEEECC-------CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCC
Q 001224          993 --------KQWVPR----ESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1053 (1120)
Q Consensus       993 --------~~~~~~----~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 1053 (1120)
                              ..+...    .+...+..++|..       +|+++++....+.|...++..++......   ++. +   ..
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~  322 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RG  322 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GC
T ss_pred             CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CC
Confidence                    000000    1234577788864       57777776677888888887665443221   111 1   11


Q ss_pred             ccceEEEecCCCCCEEEEEeCCCcEEEEecC
Q 001224         1054 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1054 v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      -.+..+++.| ||.++++.. ++.=+||++.
T Consensus       323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred             CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence            2466899999 677655433 2333566653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.04  E-value=0.52  Score=51.22  Aligned_cols=109  Identities=19%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  439 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~  439 (1120)
                      .-...+.|+|.|||+ |+++ ..+|.|.+++ .+++... ..+.              +..........|+|+|+   +.
T Consensus        27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~-~~~~--------------v~~~g~~g~~gia~~pdf~~~g   88 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLV-ASFD--------------VANVGEAGLLGLALHPEFPKKS   88 (354)
T ss_dssp             SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEE-EECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEe-eccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence            345688999999998 4444 5669999997 3444111 0000              11122346889999998   55


Q ss_pred             eEEEEEC----C----CeEEEEEccCC--ce--eeeee-eec-ccccCeEEEEEcCCCCceEEEEe
Q 001224          440 LFGVAYS----R----HIVQIYSYHGG--DE--VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC  491 (1120)
Q Consensus       440 ~las~~~----d----g~v~iwd~~~~--~~--~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~  491 (1120)
                      +|..+..    +    ..|..|+...+  ..  .+.+. .+. +.......|+|.|||.  ++++.
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~  152 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT  152 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence            5555433    3    56777877654  11  11111 121 1111346799999997  44443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.99  E-value=0.57  Score=50.76  Aligned_cols=249  Identities=8%  Similarity=0.074  Sum_probs=153.5

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      +.-.+|..+ ++|.=. ..++.|+|+++.+++....+                    ...|..=.|-.+ +.|+..+ +.
T Consensus        70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lVT-~t  125 (494)
T 1bpo_A           70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN  125 (494)
T ss_dssp             EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEEC-SS
T ss_pred             eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEEc-CC
Confidence            455677777 455443 58999999999888765332                    224555555433 3444443 56


Q ss_pred             eEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEeeccccCe
Q 001224          449 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      .|+-|++++.....+  .+..|.    ..|..-..+++.+. ++++|-      -.|.+.+|..+.+ .-+.+.||.+..
T Consensus       126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence            699999986433222  333332    36777788899886 333332      3467889996544 457788888777


Q ss_pred             EEEeeccCCCce-EEEEEec---CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          519 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       519 ~~~~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      ..+.+....... .++.+..   .+.+++-++.....-.  ..-......+.|.|+..       .+.-..+.+++.-..
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--~~f~kk~vdv~fppe~~-------~DFPvamqvs~kygv  272 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV  272 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--CCCCCEEEECCCCTTST-------TCCEEEEEEETTTTE
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--CCccceeeeeeCCcccc-------cCceeEEEecccCCE
Confidence            666543222222 3333333   2788888886531100  11122344555666543       223445667777778


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +...+.-|.|++||+.++.++..-.....  .|...+...+..-++.....|.|.-..++..
T Consensus       273 iyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            89999999999999999999987765433  4554555555555666668888877777655

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.98  E-value=0.15  Score=54.31  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=120.1

Q ss_pred             EEEEEe---CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEeecce--eeEeecc
Q 001224          838 YVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLKG  906 (1120)
Q Consensus       838 ~l~~~s---dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~--~~~~l~~  906 (1120)
                      .++.|+   ...+.+||..+.+-.  ..+........++.  - ++++++.|+.+    ..+.+||..+.+  .+..+..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            444554   256999998875432  22222222222222  3 67788888765    568888887754  3333322


Q ss_pred             cccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e--
Q 001224          907 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--  977 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~--  977 (1120)
                      ....-.++.+  +++.++.|+.+      ..+.+||..+.+-.   .+.....  +  ..-.+++. -++++++.| .  
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~~-~~~~iyv~GG~~~  160 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH---TKPSMLT--Q--RCSHGMVE-ANGLIYVCGGSLG  160 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ETTEEEEECCEES
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE---eCCCCcC--C--cceeEEEE-ECCEEEEECCCCC
Confidence            2222222222  67777888765      45888998875421   1111111  1  11122222 366666663 2  


Q ss_pred             -------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCccc
Q 001224          978 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1045 (1120)
Q Consensus       978 -------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~ 1045 (1120)
                             -..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+     ..+.+||..+.+-...-.    .
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~  234 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----M  234 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----C
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----C
Confidence                   3458899998875443322111 111112222 267777777654     358999998876543211    2


Q ss_pred             CCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCC
Q 001224         1046 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1046 ~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~~~~~~~ 1093 (1120)
                      |.....     .+++..  ++.+++.|+.+     ..+.+||+.+.+  |...
T Consensus       235 p~~r~~-----~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~  278 (306)
T 3ii7_A          235 PWKGVT-----VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK--WVAN  278 (306)
T ss_dssp             SCCBSC-----CEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEE
T ss_pred             CCCccc-----eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeC
Confidence            221101     123333  46788888865     467888887755  6553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.90  E-value=0.019  Score=60.35  Aligned_cols=166  Identities=11%  Similarity=0.043  Sum_probs=105.1

Q ss_pred             ceEEEEEccC-CCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC---CCCCCCcEEEE---ccCCcEEEEEe-----
Q 001224          910 RITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH-----  977 (1120)
Q Consensus       910 ~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~f---spdg~~la~~~-----  977 (1120)
                      ---++.|.+. +.++++.-..++|..|+...+...   .+ ...+..   .....+..+.+   .|+++++++..     
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~---~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF---NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE---EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE---EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3446889774 445555557999999998754321   12 222211   11123478899   68888888643     


Q ss_pred             ---------CCeEEEEEcC---CceeeeccccCC-----------CCCCeeEEEECCCCcEEEEEEcC-CcEEEEEcCCc
Q 001224          978 ---------ETQLAIFETT---KLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFLD-ATVCVFSAANL 1033 (1120)
Q Consensus       978 ---------d~~v~i~d~~---~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~D-g~v~iwd~~~~ 1033 (1120)
                               +..|..||+.   +++.+.......           -......++..++|+..++++.- +.|...+.+..
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                     5779999999   776654332211           01347899999999998888887 77776666544


Q ss_pred             ceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCC
Q 001224         1034 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1034 ~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      .......  . .+....  ..-+..|+++| |+++|++...+|.|..+|+..
T Consensus       170 ~~~~~~~--~-~~~~~~--~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAW--E-SGNGGQ--RPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEE--C-CCCSSS--CCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             EEeeeee--c-CCCccc--ccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence            3222111  0 111111  12234899999 688888887799999999883

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.86  E-value=0.091  Score=55.97  Aligned_cols=221  Identities=10%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeecce-----eeEeecccccceE
Q 001224          845 GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT  912 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~  912 (1120)
                      ..+.+||..+.+-..  .+....... +++ .. ++++++.|+.+     ..+.+||..+.+     .+..+......-.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEE-EE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccc-cEE-EE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            358899987654322  122111112 222 23 67788888765     368899987644     3333322222222


Q ss_pred             EEEEccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC-----CeE
Q 001224          913 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL  981 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d-----~~v  981 (1120)
                      ++.+  +++.++.|+.++     .+.+||..+.+-..   +......    ..-..++ .-+++.++.| .+     ..+
T Consensus       108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~----r~~~~~~-~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---LGDMQTA----REGAGLV-VASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---EEECSSC----CBSCEEE-EETTEEEEECCBCSSCBCCCE
T ss_pred             EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---CCCCCCC----cccceEE-EECCEEEEECCCCCCcccceE
Confidence            2222  677777777553     47788887754222   2111111    1112222 2366666664 32     468


Q ss_pred             EEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          982 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       982 ~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                      .+||..+.+-...-........-..+.  -++++++.|+.+     ..+.+||..+.+-...-.    .|.....   . 
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~---~-  247 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCY---V-  247 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBS---C-
T ss_pred             EEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccc---e-
Confidence            999998876543321111111122222  267777878764     468999998886554321    2221101   1 


Q ss_pred             eEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCC
Q 001224         1057 LVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1057 ~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~ 1093 (1120)
                       +++..  ++.+++.|+.++     .+.+||+.+.+  |...
T Consensus       248 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~  284 (301)
T 2vpj_A          248 -GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVV  284 (301)
T ss_dssp             -EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEE
T ss_pred             -eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEc
Confidence             23333  467888887663     56778877654  6543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.78  E-value=0.25  Score=52.46  Aligned_cols=230  Identities=12%  Similarity=0.116  Sum_probs=119.1

Q ss_pred             CCEEEEEe-C----CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce--ee
Q 001224          836 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VK  901 (1120)
Q Consensus       836 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~--~~  901 (1120)
                      +..++.|+ +    ..+.+||..+.+-...  +......- +++. - ++++++.|+.++     .+.+||..+.+  .+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34455554 2    4588899876543221  22111111 2222 2 677888887553     58888887654  23


Q ss_pred             EeecccccceEEEEEccCCCEEEEEeCCC-----CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          902 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      ..+......-.++.+  +++.++.|+.++     .+.+||+.+.+-.   .+.....  +  ..-.+++. -+++.++.|
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~~-~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNT--R--RSSVGVGV-VGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ETTEEEEEC
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCC--c--ccCceEEE-ECCEEEEEe
Confidence            323222222222222  677778887664     4677887764321   1111111  1  11122222 356666663


Q ss_pred             -e-------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCc
Q 001224          977 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1043 (1120)
Q Consensus       977 -~-------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~ 1043 (1120)
                       .       -..+.+||..+.+-...-........-..+.  -++++++.|+.+     ..+.+||..+.+-...-.   
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---  237 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---  237 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence             2       2358899998875443321111111122222  267888888765     369999998876553321   


Q ss_pred             ccCCCCCCCCccceEEEecCCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCC
Q 001224         1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~ 1093 (1120)
                       .+......     +++..  ++.+++.|+.++     .+.+||+.+.+  |...
T Consensus       238 -~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~  282 (302)
T 2xn4_A          238 -MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVV  282 (302)
T ss_dssp             -CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEEC
T ss_pred             -CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEEC
Confidence             22111011     23333  467888888764     48888888765  6543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.61  E-value=0.24  Score=52.54  Aligned_cols=188  Identities=9%  Similarity=0.031  Sum_probs=99.6

Q ss_pred             cCCCEEEEEe-C-----CcEEEEEcCCCc-----eeeeecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeec
Q 001224          834 KNDSYVMSAS-G-----GKISLFNMMTFK-----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV  897 (1120)
Q Consensus       834 ~d~~~l~~~s-d-----g~i~vwd~~~~~-----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~  897 (1120)
                      .+++.++.|+ +     ..+.+||..+.+     .+..+........++ . . ++++++.|+.++     .+.+||+.+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT-T-L-GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE-E-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE-E-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence            3566666665 3     358999987755     222222222222222 2 2 677888887543     588888776


Q ss_pred             ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      .+  .+..+......-.++.  -+++.++.|+.+     ..+.+||+.+.+-.   .+.....  +  ..-..++ .-++
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~--r~~~~~~-~~~~  207 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWT---NVTPMAT--K--RSGAGVA-LLND  207 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEE---EECCCSS--C--CBSCEEE-EETT
T ss_pred             CeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEE---eCCCCCc--c--cccceEE-EECC
Confidence            43  3333322222112222  267777888765     35888998775422   1111111  1  1112222 2356


Q ss_pred             cEEEEE-e-----CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224          971 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus       971 ~~la~~-~-----d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
                      +.++.| .     ...+.+||..+.+-...-...........+.  -++++++.|+.+     ..|.+||..+.+-.
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            666664 3     2469999998876543322111111122222  277787878765     35788888876544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.50  E-value=0.12  Score=56.11  Aligned_cols=108  Identities=11%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             EEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecce------
Q 001224          830 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------  899 (1120)
Q Consensus       830 l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~------  899 (1120)
                      ...+.+|..++.+.++.||.-++.....-+.+...    ...|..+..+| +|++||..+ +..|.|-.+..+.      
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence            45567888898888999999998754444444432    23688899999 999999876 5588998887321      


Q ss_pred             ------eeEeecc------cccceEEEEEccC---CCEEEEEeCCCCEEEEECCC
Q 001224          900 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  939 (1120)
Q Consensus       900 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~v~iWd~~~  939 (1120)
                            ....+.-      ...+|..+.|+|-   +..|++-..|++|++||+..
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                  0112211      3567999999986   46899999999999999987

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.50  E-value=0.65  Score=52.34  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             CCccEEEEccCCCEEEEEeC-CcEEEEEcCCCcee--eeecC------CCCCeEEEEEecC---CCcEEEEEeC------
Q 001224          825 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------  886 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~------  886 (1120)
                      .....++|.|+|+++++-.. +.|++++..++...  ..+..      .......|+|+|+   ++.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999998887765 47988886555432  22221      2456789999994   3444444332      


Q ss_pred             ------CCcEEEEEeecc-------eee-Eeecc-cccceEEEEEccCCCEEEEEeC
Q 001224          887 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA  928 (1120)
Q Consensus       887 ------dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~  928 (1120)
                            ...|.-|++..+       +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235666665431       111 11221 1123678999999998887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.43  E-value=0.16  Score=63.49  Aligned_cols=237  Identities=13%  Similarity=0.142  Sum_probs=142.3

Q ss_pred             ccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEeec
Q 001224          827 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK  905 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~  905 (1120)
                      ..+..++|..+.+|.-...++.|||+.+.+.+..+.- ...|.-=.|-.  .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus        68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             chhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence            3456678888888887788899999998777766553 33566666664  44565554 56899999964 23444454


Q ss_pred             cc----ccceEEEEEccCCCEEEEEe-------CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEE---ccCCc
Q 001224          906 GH----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQI  971 (1120)
Q Consensus       906 ~h----~~~V~~l~~s~d~~~l~s~s-------~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f---spdg~  971 (1120)
                      -|    ...|..-..+++.+|++..|       -.|.+.+|+++.+      ..+...||....   ..+..   .+...
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~~F---~~~~~~~~~~~~~  214 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAASF---AQFKMEGNAEEST  214 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHhhh---heeccCCCCCCce
Confidence            44    45677778889999987544       3478889988873      234444543211   11111   11122


Q ss_pred             EEEEEe----CCeEEEEEcCCc---e------eeeccc-cCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceee
Q 001224          972 HFLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1037 (1120)
Q Consensus       972 ~la~~~----d~~v~i~d~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~ 1037 (1120)
                      .++.+.    .+.++|-++...   .      .+..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.
T Consensus       215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence            333232    267888887543   1      111111 11124445567778877788888889999999999999986


Q ss_pred             eeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1038 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1038 ~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .-.    +.    +..|+  ..+.....+. ++.....|.|.--.+.+..
T Consensus       295 ~~r----is----~~~iF--~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          295 MNR----IS----GETIF--VTAPHEATAG-IIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             hcc----cc----CCceE--EeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence            544    11    12233  2222322233 3344467777666666544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.38  E-value=1  Score=48.08  Aligned_cols=223  Identities=9%  Similarity=0.078  Sum_probs=114.6

Q ss_pred             CcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEeecce--eeEeecccccc
Q 001224          845 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDE--VKSKLKGHSKR  910 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~v~vwd~~~~~--~~~~l~~h~~~  910 (1120)
                      ..+.+||..+.+-.. .+..........+... ++++++.|+.     .      ..+.+||..+++  .+..+......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            678999988765432 2222222333333344 7778888873     1      127778877654  22222211111


Q ss_pred             eEEEEEccCCCEEEEEeCC--------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e-C--
Q 001224          911 ITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--  978 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~D--------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-d--  978 (1120)
                      -..+.+  +++.++.|+.+        ..+.+||..+.+-.   .+.....  +   .....+..-+++.++.| . +  
T Consensus        92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~--~---r~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY--V---VYGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS--C---CBSCEEEEETTEEEEECCBCTTS
T ss_pred             eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC--c---ccceeEEEECCEEEEEeCCCCCC
Confidence            122222  56777777743        35888898875321   1111111  1   11222223566666664 3 2  


Q ss_pred             ---CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCcceeeeeCCCcccCCCCC
Q 001224          979 ---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGVS 1050 (1120)
Q Consensus       979 ---~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~~~~~~~~~~~~~~~g~~ 1050 (1120)
                         ..+.+||..+.+-...-........-..+.  -++++++.|+.++     .+.+||..+.+-...-.    .|....
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~  235 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQERS  235 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCCB
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCccc
Confidence               468999998875443322111111112222  2778888887654     58899998876554321    222111


Q ss_pred             CCCccceEEEecCCCCCEEEEEeCCC--------------cEEEEecCCCCCCCCCC
Q 001224         1051 SSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1051 ~~~v~~~~i~~~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~~~~~~~ 1093 (1120)
                      ..     +++..  ++.+++.|+.++              .+.+||+.+.+  |...
T Consensus       236 ~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~  283 (315)
T 4asc_A          236 SL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV  283 (315)
T ss_dssp             SC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred             ce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence            11     23333  467888887642              36677776654  6544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.34  E-value=0.51  Score=50.23  Aligned_cols=232  Identities=12%  Similarity=0.079  Sum_probs=120.4

Q ss_pred             cCCCEEEEEe-C----CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeC----C-----CcEEEEEeec
Q 001224          834 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV  897 (1120)
Q Consensus       834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~  897 (1120)
                      -++..++.|+ +    ..+.+||..+.+-...  +....... +++. . ++++++.|+.    +     ..+.+||..+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3556666665 2    4689999876543221  22111112 2222 2 6778887775    2     3688888876


Q ss_pred             ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      .+  .+..+......-.++.+  +++.++.|+.+     ..+.+||..+.+-..   +.....  +  ..-.+++.. ++
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~--r~~~~~~~~-~~  169 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT--R--RIGVGVAVL-NR  169 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS--C--CBSCEEEEE-TT
T ss_pred             CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc--c--ccceEEEEE-CC
Confidence            54  22222222222222223  67777777754     358888887754221   111111  0  111222222 66


Q ss_pred             cEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeee
Q 001224          971 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1039 (1120)
Q Consensus       971 ~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~ 1039 (1120)
                      ++++.| .+     ..+.+||..+.+-...-........-..+.+  ++++++.|+.+     ..+.+||+.+.+-...-
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            666664 32     4689999987765433221111112222233  77777878765     46999999887655321


Q ss_pred             CCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCC
Q 001224         1040 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1040 ~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~~~~~~~ 1093 (1120)
                      .    .+.....   .  +++..  ++.+++.|+.+     ..+.+||+.+.+  |...
T Consensus       248 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~  293 (308)
T 1zgk_A          248 P----MKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEV  293 (308)
T ss_dssp             C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEE
T ss_pred             C----CCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eeec
Confidence            1    2221101   1  23333  46788888755     357788887654  6543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.27  E-value=0.41  Score=50.91  Aligned_cols=189  Identities=10%  Similarity=0.050  Sum_probs=100.5

Q ss_pred             cCCCEEEEEe-C----CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEeecce-
Q 001224          834 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE-  899 (1120)
Q Consensus       834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~-  899 (1120)
                      -+++.++.|+ +    ..+.+||..+.+-..  .+........++.  - ++++++.|+.+      ..+.+||..+.+ 
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            3666666665 3    568899988754322  2221112222222  2 67788888765      468899987754 


Q ss_pred             -eeEeecccccceEEEEEccCCCEEEEEeC---------CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          900 -VKSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       900 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                       .+..+......-.++.  -++++++.|+.         -..+.+||..+.+-.   .+.....  +  ..-..++. -+
T Consensus       131 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~--~--r~~~~~~~-~~  200 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIE--A--RKNHGLVF-VK  200 (306)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSS--C--CBSCEEEE-ET
T ss_pred             EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccc--h--hhcceEEE-EC
Confidence             2222222111112222  26677777764         244788998875321   1211111  0  11122222 26


Q ss_pred             CcEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceee
Q 001224          970 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRC 1037 (1120)
Q Consensus       970 g~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~ 1037 (1120)
                      +++++.| .+     ..+.+||..+.+-...-...........+.+  ++++++.|+.+     ..+.+||..+.+-..
T Consensus       201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            6666663 22     4689999988754433221111122223333  77888888754     468999998876543

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.24  E-value=0.0035  Score=50.55  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=33.0

Q ss_pred             CCcchHHHHHHHHHHHhhcChHHHHHHHHHhcCCCc
Q 001224            1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF   36 (1120)
Q Consensus         1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~   36 (1120)
                      |+....||..||..||.|.||..||-+|++||++.-
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            778899999999999999999999999999999864

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.18  E-value=0.054  Score=58.63  Aligned_cols=126  Identities=17%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEe-----ec--eeeeccCCCCcccccccccCCCCceEEEEEcC-
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----RN--FKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  436 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-  436 (1120)
                      +.|..+..||+|++|.+.|  +.+|.|-.+..+.....     ..  .+.|.+..        .......+|..+.|+| 
T Consensus        66 ~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl  135 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK  135 (452)
T ss_dssp             CTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred             CceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence            4788999999999644443  36888888874432211     00  11122211        0112467899999999 


Q ss_pred             --CCCeEEEEECCCeEEEEEccCCceeee-------eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          437 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       437 --dg~~las~~~dg~v~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                        .|..|++-..|+.|++||+........       .+.+......|.+++|..++-.+|+++....|.|+-.
T Consensus       136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              567899999999999999986331110       1112223356888889887776666666666666543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.03  E-value=1.3  Score=47.97  Aligned_cols=113  Identities=13%  Similarity=0.202  Sum_probs=59.8

Q ss_pred             CCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CCeE
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF  441 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~l  441 (1120)
                      ...+.|+|.|||++|+ ++...|.|.+++.. ++...  .+  -++.        .+..........|+|+||   +.+|
T Consensus        18 ~~P~~i~~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~--~~--~~~~--------~v~~~g~~g~~gia~~pdf~~~g~l   83 (353)
T 2g8s_A           18 DHPWALAFLPDNHGML-ITLRGGELRHWQAG-KGLSA--PL--SGVP--------DVWAHGQGGLLDVVLAPDFAQSRRI   83 (353)
T ss_dssp             SSEEEEEECSTTCCEE-EEETTTEEEEEETT-TEECC--CC--BSCC--------CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred             CCcEEEEEcCCCCEEE-EEeCCceEEEEeCC-Cceee--Ee--cCCc--------ccccCCCCCceeEEECCCCCCCCEE
Confidence            4678999999998534 44567999999853 32110  00  0000        012223446789999996   5555


Q ss_pred             EEEE-C-------CCeEEEEEccCC--ce--eeeee-eec---ccccCeEEEEEcCCCCceEEEEec
Q 001224          442 GVAY-S-------RHIVQIYSYHGG--DE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG  492 (1120)
Q Consensus       442 as~~-~-------dg~v~iwd~~~~--~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~s  492 (1120)
                      ..+. .       ...|..|++..+  ..  .+.+. .+.   .....-..++|.|||. +|+.+|.
T Consensus        84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd  149 (353)
T 2g8s_A           84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE  149 (353)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred             EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence            5442 2       235666666543  11  11111 111   0011235799999995 3444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.00  E-value=0.43  Score=51.40  Aligned_cols=185  Identities=11%  Similarity=0.021  Sum_probs=93.2

Q ss_pred             ceEEEEEcCCCCeEEEEE------------CCCeEEEEEccC--Cceeeeeeeecc-----cccCeEEEEEcC--CCCce
Q 001224          428 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHG--GDEVRQHLEIDA-----HVGGVNDIAFSH--PNKQL  486 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~------------~dg~v~iwd~~~--~~~~~~~~~l~~-----h~~~V~~v~~s~--d~~~~  486 (1120)
                      ..-.++..|+|..+++++            .+|.|.++|.++  ++.. .. .+.+     .......+.+.+  ++...
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-EL-EIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-EC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            345566788876655552            689999999984  3322 11 2333     234667777765  45421


Q ss_pred             EEEEecC--CCcEEEEECCCCce----eEEeecc-ccCeEEEeeccCCCceEEEEEec---C--------------CeEE
Q 001224          487 CVITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK  542 (1120)
Q Consensus       487 ~l~s~s~--d~~i~vwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d--------------g~i~  542 (1120)
                      ++++-..  +.+|.+|++..+..    +.++.+. -...+.+.+.  ++|.+.++...   |              |.|.
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            3333222  56788888765322    2333332 1335566653  34455555431   1              2232


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCC-Ccee--EEE
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDS-VQLL--TSI  618 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~--~~~  618 (1120)
                      .+|.  .+ ...+...-                     ..-+.++++||++.|+.+ +..+.|+.|++.. +...  ..+
T Consensus       207 r~d~--~~-~~~~~~~l---------------------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~  262 (355)
T 3sre_A          207 YYSP--ND-VRVVAEGF---------------------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL  262 (355)
T ss_dssp             EECT--TC-CEEEEEEE---------------------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEC--Ce-EEEeecCC---------------------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence            2222  11 11111111                     123446666666666555 4578899999863 3321  222


Q ss_pred             ecCCCCCCcCeEEEcC-CCCEEEEEE
Q 001224          619 DADGGLPASPRIRFNK-DGCLLAVST  643 (1120)
Q Consensus       619 ~~~~~~~~v~~~~~s~-~~~~l~~~~  643 (1120)
                      ...   ...-.+++.+ +|++.+++.
T Consensus       263 ~~~---g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          263 SFD---TLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             ECS---SEEEEEEECTTTCCEEEEEE
T ss_pred             eCC---CCCceEEEeCCCCcEEEEec
Confidence            211   2345577777 477666554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.75  E-value=1.1  Score=47.44  Aligned_cols=187  Identities=11%  Similarity=0.082  Sum_probs=97.8

Q ss_pred             CCCEEEEEe-C-----CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEeecce--
Q 001224          835 NDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--  899 (1120)
Q Consensus       835 d~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~--  899 (1120)
                      +++.++.|+ +     ..+.+||..+.+-..  .+........++ . - ++++++.|+.++     .+.+||+.+.+  
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-V-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-E-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-E-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            666666665 3     358899987654322  222111122222 2 2 677888887654     47788876643  


Q ss_pred             eeEeecccccceEEEEEccCCCEEEEEeCC-------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          900 VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       900 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      .+..+......-.++.  -+++.++.|+.+       ..+.+||+.+.+-.   .+.....  +  ..-.+++ .-++++
T Consensus       138 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~--~--r~~~~~~-~~~~~i  207 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT---YIAEMST--R--RSGAGVG-VLNNLL  207 (302)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEE---EECCCSS--C--CBSCEEE-EETTEE
T ss_pred             ecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE---ECCCCcc--c--cccccEE-EECCEE
Confidence            2322322222222222  266777777653       34888998775321   1111111  1  1112222 235666


Q ss_pred             EEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCccee
Q 001224          973 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1036 (1120)
Q Consensus       973 la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~~~~ 1036 (1120)
                      ++.| .+     ..+.+||..+.+-...-........-..+.  -++++++.|+.++     .|.+||..+.+-.
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            6664 33     469999998875443221111111112222  3778888887654     4899999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.051  Score=58.07  Aligned_cols=199  Identities=7%  Similarity=0.024  Sum_probs=108.9

Q ss_pred             cEEEEEeCCCcEEEEEeecceeeEeeccc-ccceEEEEE---ccCCCEEEEE-eCCCCEEEEECCCcccccceeeeccCC
Q 001224          879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF---SHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG  953 (1120)
Q Consensus       879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~l~s~-s~Dg~v~iWd~~~~~~~~~~~~~~~~~  953 (1120)
                      .++++++.||.|+-+|..+|+.+..+... ..++....-   ..++..++.. +.||.|..++..+|.......+...-.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999988887654 122222110   0123334333 589999999988875432211111111


Q ss_pred             CCCCCCCCcEEEE------------ccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCC-----eeEEEEC-----C
Q 001224          954 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 1011 (1120)
Q Consensus       954 ~~~~~~~i~~~~f------------spdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~ 1011 (1120)
                             ...+..            +.+|..++.+.++.+...|+.+|+.+..+....-...     ..|....     .
T Consensus        91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence                   011221            1344444447999999999999999988764321111     1111111     1


Q ss_pred             CCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 001224         1012 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1090 (1120)
                      .+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. .....+. |+.+ +.++.||.|...|..+|+..|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245677788788888777 5564 33332222211110 00000 0000111 3455 557889999999999888888

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.72  E-value=0.96  Score=48.23  Aligned_cols=193  Identities=13%  Similarity=0.102  Sum_probs=98.4

Q ss_pred             EEccCCCEEEEEe-----CC-------cEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC--------C
Q 001224          831 ALSKNDSYVMSAS-----GG-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD--------S  888 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-----dg-------~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d--------g  888 (1120)
                      +...+++.++.|+     ++       .+.+||..+.+-..  .+....... +++..  ++++++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence            3345677777665     11       27788887654321  122111111 22222  66777877743        3


Q ss_pred             cEEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeC-C-----CCEEEEECCCcccccceeeeccCCCCCCCCC
Q 001224          889 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  960 (1120)
Q Consensus       889 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~  960 (1120)
                      .+.+||..+.+  .+..+......-.++.  -+++.++.|+. +     ..+.+||..+.+-..   +....  .+  ..
T Consensus       118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p--~~--r~  188 (315)
T 4asc_A          118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQ--TA--RS  188 (315)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCS--SC--CB
T ss_pred             eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCC--Cc--hh
Confidence            58899987653  3333322221112222  36677777776 2     358889988753221   11111  11  11


Q ss_pred             CcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----------
Q 001224          961 DTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1023 (1120)
Q Consensus       961 i~~~~fspdg~~la~~-~d~-----~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------- 1023 (1120)
                      -..++ .-++++++.| .++     .+.+||..+.+-...-...........+.  -++++++.|+.++           
T Consensus       189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~  265 (315)
T 4asc_A          189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPT  265 (315)
T ss_dssp             SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred             ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCcccccc
Confidence            12222 2366666664 332     58899998875443322111111122222  2677777777642           


Q ss_pred             ---cEEEEEcCCcceeee
Q 001224         1024 ---TVCVFSAANLKLRCR 1038 (1120)
Q Consensus      1024 ---~v~iwd~~~~~~~~~ 1038 (1120)
                         .|.+||..+.+-...
T Consensus       266 ~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          266 ELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEEEETTTTEEEEE
T ss_pred             ccCcEEEecCCCChhhhh
Confidence               478889888765544

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.62  E-value=0.0084  Score=47.97  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHhccc
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF   60 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~   60 (1120)
                      ++|+.+-|++||..+||.+++.+|.+|.|+..+  ...-.+-+|+-.|..++++-.++
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI   67 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   67 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence            578999999999999999999999999998875  22234557788887776665554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.60  E-value=3.1  Score=44.54  Aligned_cols=100  Identities=11%  Similarity=0.117  Sum_probs=59.8

Q ss_pred             CccEEEEccCCCEEEEEe--CCcEEEEEcCCCce------------------eeeecCCCCCeEEEEEecCCCcEEEEEe
Q 001224          826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------------MATFMPPPPAATFLAFHPQDNNIIAIGM  885 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~  885 (1120)
                      ....++|+|+|.+.++-.  ++.=.|--+..+..                  +..+..+......++|.  ++.++....
T Consensus       203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l  280 (347)
T 3das_A          203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGL  280 (347)
T ss_dssp             BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEES
T ss_pred             CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccc
Confidence            356799999887666543  33222222222111                  12222222356788887  466777667


Q ss_pred             CCCcEEEEEeeccee----eEeecccccceEEEEEccCCCEEEEEe
Q 001224          886 DDSSIQIYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSG  927 (1120)
Q Consensus       886 ~dg~v~vwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s  927 (1120)
                      ..+.|....+.....    ...+.+....+..|+..|||.++++.+
T Consensus       281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            777787777765432    223455557899999999998776644

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=95.53  E-value=0.022  Score=52.94  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=58.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccCCC
Q 001224           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD  135 (1120)
Q Consensus        65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~  135 (1120)
                      ..++.+ ++|+|+.|.||||+..|+..+|..|+.+.-.-+.....+.++.|+.+....++.+++....+..
T Consensus        46 k~EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~  115 (156)
T 2nxp_A           46 RAELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT  115 (156)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCG
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHh
Confidence            346666 9999999999999999999999999997766666667899999999988888877676666644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.53  E-value=0.66  Score=50.59  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CCCEEEEEe--CCcEEEEEcCC----Cceeeeec-CCCCCeEEEEEecCCCcEEEEEeC-C---------CcEEEEEeec
Q 001224          835 NDSYVMSAS--GGKISLFNMMT----FKTMATFM-PPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRV  897 (1120)
Q Consensus       835 d~~~l~~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~  897 (1120)
                      +++.++.|+  ...+.++|..+    +..+..+. ...... +++. - ++++++.|+. +         ..+.+||..+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            666667776  46799999863    22222222 111122 2222 2 6778887776 2         3688899876


Q ss_pred             ce--eeEeecccccceEEEEEccCCCEEEEEeCC
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD  929 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  929 (1120)
                      .+  .+..+. ........+...++++++.|+.+
T Consensus        96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred             CcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence            53  222222 01111111222577888888865

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.36  E-value=2.9  Score=44.44  Aligned_cols=222  Identities=12%  Similarity=0.086  Sum_probs=111.2

Q ss_pred             CcEEEEEcCCCceee-eecCCCCCeEEEEEecCCCcEEEEEeC----CC-------cEEEEEeecce--eeEeecccccc
Q 001224          845 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDE--VKSKLKGHSKR  910 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~--~~~~l~~h~~~  910 (1120)
                      ..+..||..+.+-.. .+..........+... ++.+++.|+.    ++       .+.+||..+.+  .+..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            348889988765433 1221122222333344 7788888873    12       17778876643  22222221111


Q ss_pred             eEEEEEccCCCEEEEEeCC-------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e-C---
Q 001224          911 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E---  978 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~D-------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-d---  978 (1120)
                      -..+.+  +++.++.|+.+       ..+.+||..+.+-.   .+......    ..-.+++. .++++++.| . +   
T Consensus       103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---EVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE---EECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred             cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe---ECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence            222222  66777777764       24777888764321   11111110    01122222 566666664 2 2   


Q ss_pred             --CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          979 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       979 --~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                        ..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+     ..+.+||..+.+-...-.    .|.....
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~  246 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQERSS  246 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCCBS
T ss_pred             ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcccc
Confidence              358999998876443321111 111122222 267777777654     357889988876543211    2222111


Q ss_pred             CCccceEEEecCCCCCEEEEEeCC--------------CcEEEEecCCCCCCCCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1092 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~D--------------g~v~vW~~~~~~~~~~~ 1092 (1120)
                      .     +++..  ++.+++.|+.+              ..+.++|+.+.+  |..
T Consensus       247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~  292 (318)
T 2woz_A          247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG  292 (318)
T ss_dssp             C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred             e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence            1     23333  46788887764              357778877654  554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.29  E-value=1  Score=47.84  Aligned_cols=187  Identities=10%  Similarity=0.066  Sum_probs=97.4

Q ss_pred             CCCEEEEEeC----------CcEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001224          835 NDSYVMSASG----------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  897 (1120)
Q Consensus       835 d~~~l~~~sd----------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~  897 (1120)
                      +++.++.|+.          ..+.+||..+.+-..  .+........++.+   ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5666665542          458899987654322  22211122222222   67788877644     3688888876


Q ss_pred             ce--eeEeecccccceEEEEEccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          898 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       898 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      .+  .+..+......-.++.+  ++++++.|+.+     ..+.+||+.+.+-..   +.....  +  ..-.+++.. ++
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~--~--r~~~~~~~~-~~  216 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNT--I--RSGAGVCVL-HN  216 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSS--C--CBSCEEEEE-TT
T ss_pred             CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCC--c--cccceEEEE-CC
Confidence            53  22222222222222233  67777777765     458889987754221   111111  1  111223222 66


Q ss_pred             cEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCccee
Q 001224          971 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1036 (1120)
Q Consensus       971 ~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~ 1036 (1120)
                      ++++.| .+     ..+.+||+.+.+-...-...........+.  -++++++.|+.+     ..|.+||..+.+-.
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            666664 32     569999998876543322111111122222  267777877754     35788888877654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.21  E-value=1.4  Score=47.90  Aligned_cols=59  Identities=10%  Similarity=-0.071  Sum_probs=31.5

Q ss_pred             eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC------cEEEEEcCCcceeeeeC
Q 001224          980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg------~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+.+||+.+.+-...-........-.  +...++++++.|+.++      .|.++++++++.+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            57789988765333211111111112  2334788888888653      46667898888886655

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.00  E-value=2.1  Score=45.57  Aligned_cols=193  Identities=9%  Similarity=0.024  Sum_probs=96.8

Q ss_pred             EEccCCCEEEEEe-C----C-------cEEEEEcCCCceee--eecCCCCCeEEEEEecCCCcEEEEEeCC-------Cc
Q 001224          831 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SS  889 (1120)
Q Consensus       831 ~~s~d~~~l~~~s-d----g-------~i~vwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~  889 (1120)
                      +...+++.++.|+ .    +       .+.+||..+.+-..  .+....... +++..  ++++++.|+.+       ..
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccce
Confidence            3445677777765 1    1       16778877654322  222111122 22222  56788888754       24


Q ss_pred             EEEEEeecce--eeEeecccccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCC
Q 001224          890 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  961 (1120)
Q Consensus       890 v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i  961 (1120)
                      +.+||..+.+  .+..+......-.++.  .++++++.|+.+      ..+.+||..+.+-.   .+....  .+  ..-
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p--~~--r~~  199 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMK--TP--RSM  199 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCS--SC--CBS
T ss_pred             EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCC--CC--ccc
Confidence            7788877643  2222221111111222  467777777642      35889998875421   111111  11  111


Q ss_pred             cEEEEccCCcEEEEE-eC-----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-------------
Q 001224          962 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1022 (1120)
Q Consensus       962 ~~~~fspdg~~la~~-~d-----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------------- 1022 (1120)
                      ..++. -+++.++.| .+     ..+.+||..+.+-...-........- +++ .-++++++.|+.+             
T Consensus       200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~  276 (318)
T 2woz_A          200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTE  276 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred             ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-EECCEEEEECCeeccCCCCceeccce
Confidence            23332 356666664 22     35789998877544322111111111 222 2367777777754             


Q ss_pred             -CcEEEEEcCCcceeee
Q 001224         1023 -ATVCVFSAANLKLRCR 1038 (1120)
Q Consensus      1023 -g~v~iwd~~~~~~~~~ 1038 (1120)
                       ..+.+||..+.+-...
T Consensus       277 ~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          277 VNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCEEEEETTTTEEEEE
T ss_pred             eeeEEEEeCCCCEehhh
Confidence             3588889888766544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.99  E-value=0.18  Score=49.26  Aligned_cols=146  Identities=13%  Similarity=0.021  Sum_probs=83.2

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCC--------eEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      ..++.++|+|+|.+.++ .+|.++-.+..+.....-+. ....        -.++.|.| ++.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence            36779999999998777 88887777664422211111 0112        37899999 8888777  56988877753


Q ss_pred             cceee------Eee-cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce--eeeccCCCCCCCCCCcEEEEc
Q 001224          897 VDEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFH  967 (1120)
Q Consensus       897 ~~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~fs  967 (1120)
                      +...-      ..+ .+-=..+..|.|.|+|.+.+..  |+.+.-+...++......  ....-.+..   ..-+.+.|.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~  190 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFS  190 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEEC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEEC
Confidence            31110      011 1111467899999999887766  776543332221110000  000000000   123456799


Q ss_pred             cCCcEEEEEeCCeE
Q 001224          968 QDQIHFLVVHETQL  981 (1120)
Q Consensus       968 pdg~~la~~~d~~v  981 (1120)
                      ++|.+.++. ++.+
T Consensus       191 ~~G~l~~v~-~g~~  203 (236)
T 1tl2_A          191 SVGTLFGVQ-GGKF  203 (236)
T ss_dssp             TTSCEEEEE-TTEE
T ss_pred             CCCcEEEEe-CCeE
Confidence            999888877 6643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.24  Score=52.91  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCC--CcccccccccCCCCceEEEEEcCCCCeEEEE-ECCCeEEEEEc
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSY  455 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~dg~v~iwd~  455 (1120)
                      +++.++.||.|.-.|.++|+.+-+       ....  .....   ..+...       ..++..++.. +.||.|..++.
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~-------~~~~~~~p~~~---~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~   74 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWS-------IEPENFQPLIE---IQEPSR-------LETYETLIIEPFGDGNIYYFNA   74 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEE-------ECGGGSCCSEE---CCCSCT-------TTSSEEEEECCSTTTEEEEEET
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEE-------ecCCccCCcEE---ecCCcc-------ccCCcEEEEEECCCCEEEEEEC
Confidence            689999999999999999997654       2211  00000   001110       0133333333 57899999998


Q ss_pred             cCCceeeeeeeecc--cccCeEE---EEE------cCCCCceEEEEecCCCcEEEEECCCCceeEEeec
Q 001224          456 HGGDEVRQHLEIDA--HVGGVND---IAF------SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  513 (1120)
Q Consensus       456 ~~~~~~~~~~~l~~--h~~~V~~---v~~------s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  513 (1120)
                      .+|..... ..+..  ...++..   ...      +.++   .+++|+.++.+...|+.+|+.+..+..
T Consensus        75 ~~G~~~~~-~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           75 HQGLQKLP-LSIRQLVSTSPLHLKTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTEEEEEE-EEHHHHHTTCSEEEECC----------CCE---EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CCCcEEee-eccccceeccccccCCCceeecccccccCC---EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            87753321 12111  1112221   000      1233   589999999999999999999998863

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.92  E-value=0.08  Score=51.67  Aligned_cols=146  Identities=12%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             CeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc--------eEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          867 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       867 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .+..++|+| ++.+.++  .+|.++-.+..+.+. ..+.+-...        -.++.|.++|.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            577999999 8987777  677766666544211 111111112        368999999988887  56888777653


Q ss_pred             Cccccccee--eeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeec-----cccCCCCCCeeEEEECC
Q 001224          939 GWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-----WVPRESSAPITHATFSC 1011 (1120)
Q Consensus       939 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~-----~~~~~h~~~v~~l~~s~ 1011 (1120)
                      +.......-  ...-.+.   -..+..+.|.|+|.+.++. |+.+.-....+.....-     ......-..-..+.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~g---w~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGG---WSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSS---GGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCC---CCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            322211100  0000100   0256899999999999998 88864433332211100     01111122344566888


Q ss_pred             CCcEEEEEEcCCc
Q 001224         1012 DSQLVYACFLDAT 1024 (1120)
Q Consensus      1012 dg~~l~s~~~Dg~ 1024 (1120)
                      +|.+.++.  +|.
T Consensus       192 ~G~l~~v~--~g~  202 (236)
T 1tl2_A          192 VGTLFGVQ--GGK  202 (236)
T ss_dssp             TSCEEEEE--TTE
T ss_pred             CCcEEEEe--CCe
Confidence            88776655  663

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=94.92  E-value=0.016  Score=52.46  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             cccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        66 ~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      .++.+ ++|+|+.|.||||+..|..++|..|+.+.-.-+... .+.++.|+.+....++.+++....+
T Consensus        28 ~EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~f   93 (138)
T 2j4b_A           28 NDLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTF   93 (138)
T ss_dssp             HHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHH
Confidence            36666 999999999999999999999999999776666666 8889999988888877766655444

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=94.66  E-value=0.014  Score=53.41  Aligned_cols=67  Identities=18%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      ..++.+ ++|+|+.|.||||+..| .++|..|+.+.-.-+...+.+.++.|+.+....++.+++....+
T Consensus        29 k~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~f   95 (148)
T 2j49_A           29 KPELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAF   95 (148)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHH
Confidence            446667 99999999999999999 99999999976655555466778888887777777666555444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.66  E-value=3.4  Score=43.41  Aligned_cols=175  Identities=11%  Similarity=0.066  Sum_probs=97.1

Q ss_pred             EccCCCEEEEEe---CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC--------------CcEEEEE
Q 001224          832 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN  894 (1120)
Q Consensus       832 ~s~d~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd  894 (1120)
                      |+.++.+|....   ++.|...+..... ...+..    -.+--+++ ++.+|+.....              ..|+..+
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            345777777664   4667777765433 333331    22445678 66777666543              3566666


Q ss_pred             eecceeeEeecccccceEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcE
Q 001224          895 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  972 (1120)
Q Consensus       895 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~  972 (1120)
                      +..++. ..+...    .+..|++++++|+-..  .++.-.||.+........++...         .+  .+|+++|+.
T Consensus        95 ~dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~---------~~--~~~~~~g~~  158 (302)
T 3s25_A           95 RNGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH---------YL--FTCNTSDRY  158 (302)
T ss_dssp             TTSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS---------CC--CCSEEETTE
T ss_pred             CCCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC---------Cc--eEeeEECCE
Confidence            555432 223221    1236788999988765  34545555444322212222211         11  346889998


Q ss_pred             EEEEe--CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC--cEEEEEcCCcc
Q 001224          973 FLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVCVFSAANLK 1034 (1120)
Q Consensus       973 la~~~--d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg--~v~iwd~~~~~ 1034 (1120)
                      |.-..  ...|.+-++..+.....+.     +... ..+.|++++|+-...++  .|..-+++...
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            88764  4578888877665543322     1222 34669999988766443  46555666554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.39  E-value=6.4  Score=42.01  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC---CC
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  439 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~  439 (1120)
                      .-...+.|+|.|||+ ++++-...|.|++++..+++......+             ..+..........|+|+||   +.
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence            346788999999998 566655589999998766553211000             0022334567899999995   44


Q ss_pred             eEEEE-E--CCCeEEEEEccCCc----e---eeeee-eec-ccccCeEEEEEcCCCCceEEEEe
Q 001224          440 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC  491 (1120)
Q Consensus       440 ~las~-~--~dg~v~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~  491 (1120)
                      +|... +  .++.|.-|.+..+.    .   .+.+. .+. +....-..|+|.|||.  ++++.
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~  157 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT  157 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence            44443 2  34556667665521    1   11111 121 1112346799999997  44543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.27  E-value=1.4  Score=55.31  Aligned_cols=212  Identities=9%  Similarity=0.097  Sum_probs=122.6

Q ss_pred             EEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          370 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       370 v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      .-.+|..+ ++|.=. ..++.|+|+++...+....+                    ..+|.-=.|-.+. .|+..+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~~a  126 (1630)
T 1xi4_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  126 (1630)
T ss_pred             hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCC-eeEEEc-CCe
Confidence            33566666 455433 57899999998876654221                    2345555554433 344333 456


Q ss_pred             EEEEEccCCceeeeeeeeccc----ccCeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEeeccccCeE
Q 001224          450 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY  519 (1120)
Q Consensus       450 v~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~~h~~~v~  519 (1120)
                      |.-|++.+.....  ..+..|    ...|..-.-+++.+. ++++|-      -.|.+.+|..+.+ .-+.+.||.+...
T Consensus       127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~  202 (1630)
T 1xi4_A          127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (1630)
T ss_pred             EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence            9999997533221  123333    346777788888886 333332      4578888986544 3456677776655


Q ss_pred             EEeeccCCCceEEEE-Eec---CCeEEEEecCCC-CCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          520 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s-~~~---dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      .+.....+....|++ +..   .+.+++-++... ....   .-......+.|.|+..       ......+..++.-..
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV  272 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence            444322222122332 221   268888888653 1111   1112234455555432       123345666777778


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEe
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSID  619 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~  619 (1120)
                      +...+.-|.|.++|+.|+.++..-.
T Consensus       273 iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEEEecCceEEEEecccchhhhhcc
Confidence            8889999999999999998876554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.20  E-value=9.1  Score=43.00  Aligned_cols=102  Identities=16%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCce-------------eeeecCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS  888 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg  888 (1120)
                      ......+.++|||+++++++  +.++.++|+.....             ..... -.-.....+|.+ +|....+-.-|.
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS  399 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS  399 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence            34455789999999999988  78999999874211             11222 234578899999 786666777999


Q ss_pred             cEEEEEeecc----------eeeEeecccccceEEEEE------ccCCCEEEEEeC
Q 001224          889 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSGA  928 (1120)
Q Consensus       889 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s~  928 (1120)
                      .|.-|++...          ..+..+.-|-.+ -.+.-      .+||++|++...
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence            9999999764          455666655443 22332      478999998753

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.01  E-value=3.9  Score=45.97  Aligned_cols=110  Identities=10%  Similarity=0.085  Sum_probs=62.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCC--CCCCCCcEEEEccC---CcEEEEE--e----
Q 001224          909 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H----  977 (1120)
Q Consensus       909 ~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~fspd---g~~la~~--~----  977 (1120)
                      ...++|+|.|||+++++-...+.|++++..++...  ..........  ........++|+||   +.+|.++  .    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            45679999999998877554456888876544321  1222221110  11245678999995   5555442  2    


Q ss_pred             --------CCeEEEEEcCCc-------eeee-ccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224          978 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       978 --------d~~v~i~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                              ...|.-|+...+       +.+. .+. .........|+|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence                    235555655322       1111 121 121234789999999997776553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.59  E-value=12  Score=42.16  Aligned_cols=195  Identities=13%  Similarity=0.146  Sum_probs=112.0

Q ss_pred             cCCCEEEEEe--CCcEEEEEcCCCceeeeecC-CCCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001224          834 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI  892 (1120)
Q Consensus       834 ~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v  892 (1120)
                      .||+|+....  +.+|...+++..++-+.+.- ....+..+.|-  | +..|++.+++       ||..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            4889999987  57788899988887655432 34567888886  5 6667776663       3321         11


Q ss_pred             EEe---ecceeeEeecccccceEEEEEccCCCEEEEEeCCC---------------CEEEEECCC-------cccccce-
Q 001224          893 YNV---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDG-------WEKQKNR-  946 (1120)
Q Consensus       893 wd~---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~v~iWd~~~-------~~~~~~~-  946 (1120)
                      |..   .+.+....+.- .+..-.+...++|++.++.+...               -+.++++..       |+..... 
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            111   11111111100 11222344566777777665532               244555332       1110000 


Q ss_pred             -eeeccCCCC------------CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCcee-------------eeccccC
Q 001224          947 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR  998 (1120)
Q Consensus       947 -~~~~~~~~~------------~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~-------------~~~~~~~  998 (1120)
                       -....++..            +...+...+.++|||++++++  .+.++.++|..+...             .....  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence             001111111            111345788999999999995  567899999885321             11221  


Q ss_pred             CCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224          999 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       999 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                       -.......+|.++|.-..+-..|..|.-|++...
T Consensus       376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence             1456788999999955555568999999999764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.40  E-value=3.8  Score=49.06  Aligned_cols=197  Identities=10%  Similarity=0.068  Sum_probs=105.0

Q ss_pred             cCCCEEEEEe-C----CcEEEEEcCCCceeeee--------cCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001224          834 KNDSYVMSAS-G----GKISLFNMMTFKTMATF--------MPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN  894 (1120)
Q Consensus       834 ~d~~~l~~~s-d----g~i~vwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd  894 (1120)
                      .++..++.|+ +    ..+.+||..+.+-...-        ......-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            5666777765 3    35889998765433222        11112233444433 567788887543      578888


Q ss_pred             eecc--eeeEeecccccceEEEEEccCCCEEEEEeCCC--CEEEEECCCcccccceeeeccCCCCC-CCCCCcEEEEccC
Q 001224          895 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTP-TAQSDTRVQFHQD  969 (1120)
Q Consensus       895 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~fspd  969 (1120)
                      ..+.  +.+..+......- +++...+++.++.||.++  .+.+||..+..-.   .+.. .+..+ ....-..+++..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~---~~~~-~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK---DVTP-KDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEE---ECCC-SSGGGGSCCBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceE---EccC-CCCCCCcccceeEEEEeCC
Confidence            8774  3333332211111 222223788888888765  6889998875421   1111 00000 0012234566665


Q ss_pred             -CcEEEEE-e--C-----CeEEEEEcCCce------eeeccccCCCCCCeeEEEECCCCcEEEEEEcC--------CcEE
Q 001224          970 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1026 (1120)
Q Consensus       970 -g~~la~~-~--d-----~~v~i~d~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g~v~ 1026 (1120)
                       ++.++.| .  +     ..+.+||+.+..      .............-.+++...++++++.|+.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             6666664 3  2     358899998876      11111100011111233333347888888743        4599


Q ss_pred             EEEcCCccee
Q 001224         1027 VFSAANLKLR 1036 (1120)
Q Consensus      1027 iwd~~~~~~~ 1036 (1120)
                      +||..+.+-.
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988765

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.08  E-value=16  Score=39.92  Aligned_cols=261  Identities=10%  Similarity=0.053  Sum_probs=119.0

Q ss_pred             CCCccEEEEcc--CCCEEEEEeCC----cEEEEEc--CCCceeee---ecC--------CCCCeEEEEEecCC-CcEEEE
Q 001224          824 EEAVPCFALSK--NDSYVMSASGG----KISLFNM--MTFKTMAT---FMP--------PPPAATFLAFHPQD-NNIIAI  883 (1120)
Q Consensus       824 ~~~v~~l~~s~--d~~~l~~~sdg----~i~vwd~--~~~~~~~~---~~~--------~~~~i~~l~~sp~d-~~~las  883 (1120)
                      ...|.+|++.|  .+...+.+..|    .|...+-  .+++.+..   +..        ....|.+++++|.+ ...|.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            45688999998  55555555454    3443321  12222211   111        11247789998743 445555


Q ss_pred             EeCCCcEEEEEee--cceeeEeecc----------------cccceEEEEEccC-CCEEEEEeCCCCEEEEECCCccccc
Q 001224          884 GMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQK  944 (1120)
Q Consensus       884 g~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~  944 (1120)
                      ++..+.|...+-.  +.+.+..+..                ....|.+|.+.|. ...|..+..++.|...+ +.++ . 
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~-t-  210 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT-D-  210 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS-S-
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC-C-
Confidence            6556655544211  1222211111                1235788999873 34444444444343332 2221 1 


Q ss_pred             ceeeec-cCC-CCC-----CCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceeeeccccCCCC---CCeeEEEECC-C
Q 001224          945 NRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC-D 1012 (1120)
Q Consensus       945 ~~~~~~-~~~-~~~-----~~~~i~~~~fspd-g~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~---~~v~~l~~s~-d 1012 (1120)
                      ...... ... ..+     ....+..+++.|+ ...|.++..+.|...+-. ++....+......   ..+.++++.| +
T Consensus       211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~  289 (394)
T 3b7f_A          211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD  289 (394)
T ss_dssp             CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred             ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence            111111 000 000     0124678899986 355666656666555422 2222222210001   3467788876 3


Q ss_pred             CcEEEEEEc-----------CCcEEEEEcCC-cceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE
Q 001224         1013 SQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1080 (1120)
Q Consensus      1013 g~~l~s~~~-----------Dg~v~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v 1080 (1120)
                      ...|.++..           ++...||.... |+.-..+.  .-+|....-..+....++++|.++..|+.++.++.|  
T Consensus       290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l--  365 (394)
T 3b7f_A          290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI--  365 (394)
T ss_dssp             TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE--
T ss_pred             CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE--
Confidence            344444432           33345665544 33333332  112321100011112578888666667777766654  


Q ss_pred             EecCCCCCCCCC
Q 001224         1081 FEPLESEGKWGV 1092 (1120)
Q Consensus      1081 W~~~~~~~~~~~ 1092 (1120)
                      |.-..+..+|..
T Consensus       366 ~~S~D~G~tW~~  377 (394)
T 3b7f_A          366 WASADEGEHWQC  377 (394)
T ss_dssp             EEESSTTSBCEE
T ss_pred             EEECCCCCCceE
Confidence            444454456654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.47  E-value=15  Score=38.36  Aligned_cols=111  Identities=9%  Similarity=0.105  Sum_probs=66.1

Q ss_pred             EEEEecCCCeEEEEEeCC-------------CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          369 SMDFHPVQQTLLLVGTNV-------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      +--++++|++|..+...+             ..|+..++..++...                    +...    .+..|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence            456789999977777654             356666766654322                    1111    123788


Q ss_pred             CCCCeEEEEE--CCC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEe
Q 001224          436 PDGSLFGVAY--SRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  511 (1120)
Q Consensus       436 pdg~~las~~--~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~  511 (1120)
                      +++++|+-..  .++  .|..-++++.. .+   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999999876  344  45555665433 22   2333322    467888986 3334445678888887766544433


Q ss_pred             e
Q 001224          512 E  512 (1120)
Q Consensus       512 ~  512 (1120)
                      .
T Consensus       184 ~  184 (302)
T 3s25_A          184 D  184 (302)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.14  E-value=11  Score=38.99  Aligned_cols=224  Identities=13%  Similarity=0.062  Sum_probs=115.3

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  904 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  904 (1120)
                      ..|..++.... ..++.. ||.|+.|-....-.+..-......|..++...  ...++. . ||.|+.|-......+..-
T Consensus        24 ~~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           24 SGVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SSCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            35667776543 233333 88899997654322221111223577777653  344554 4 999999986542211111


Q ss_pred             cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001224          905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  984 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~  984 (1120)
                      ..-...|..++...+.  .+.-. ||.|..|-......... ...       ....|..++...+...+ .. |+.|..|
T Consensus        98 ~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~~~~~-l~-~G~v~~w  164 (282)
T 3qhy_B           98 AEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVYTALA-VK-NGGVIAW  164 (282)
T ss_dssp             GGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred             cccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence            1112467777776443  33334 89999997655322110 000       01235555544333222 23 7889888


Q ss_pred             EcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCC
Q 001224          985 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1064 (1120)
Q Consensus       985 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~ 1064 (1120)
                      -......+....  .-...|..|+-..+.. ++.  .||.|+.|-....-.+.       .|.. ....+.  .++.-. 
T Consensus       165 G~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-  228 (282)
T 3qhy_B          165 GDNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-  228 (282)
T ss_dssp             ECCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS-
T ss_pred             cCCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC-
Confidence            765433322111  1134677777644333 333  59999999765432221       1100 011133  555443 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCC
Q 001224         1065 EPNEFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1065 d~~~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                       ...++..  ||.|+.|--...
T Consensus       229 -~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          229 -WYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             -SCEEEEE--TTEEEEESTTCC
T ss_pred             -CEEEEEE--CCEEEEecCCCC
Confidence             2344444  999999986653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=89.91  E-value=23  Score=37.85  Aligned_cols=165  Identities=12%  Similarity=0.156  Sum_probs=91.6

Q ss_pred             CCCceEEEEecCCCeEEEEEe-------------CCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      ......++..|+|.  +.+++             .+|.|.++|..+..... ..+.+-...          +....-...
T Consensus        49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~----------~~~~~f~Ph  115 (355)
T 3sre_A           49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNT----------LDISSFNPH  115 (355)
T ss_dssp             CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSS----------CCGGGCCEE
T ss_pred             CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCC----------CCcCceeee
Confidence            34667788899885  44444             68999999987432111 112111000          001123455


Q ss_pred             EEEEcC--CCC-eEEEE-EC--CCeEEEEEccCC-ceeeeeeeeccc-ccCeEEEEEcCCCCceEEEEec----------
Q 001224          431 RVIWSP--DGS-LFGVA-YS--RHIVQIYSYHGG-DEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG----------  492 (1120)
Q Consensus       431 ~l~~sp--dg~-~las~-~~--dg~v~iwd~~~~-~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~s----------  492 (1120)
                      .+.+.+  +|. +|.++ ..  +.+|.+|+++.+ .......++.+. -...+.+++.++|.  +.++..          
T Consensus       116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred             eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence            666655  454 44444 22  568889888754 223333344443 23678999999998  566643          


Q ss_pred             -------CCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEE-ecCCeEEEEecCC
Q 001224          493 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDN  548 (1120)
Q Consensus       493 -------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~  548 (1120)
                             ..|.|..+|.  ++. ..+...-..-+.++|++  |++.|+.+ +..+.|..|++..
T Consensus       194 ~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISP--DGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred             chhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECC--CCCEEEEEeCCCCeEEEEEECC
Confidence                   1234444443  433 23322334567788865  44555554 4578999999874

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.79  E-value=23  Score=36.54  Aligned_cols=221  Identities=14%  Similarity=0.092  Sum_probs=108.8

Q ss_pred             CceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  445 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  445 (1120)
                      .|..|+-...-  .++. . ||.|..|-......+..             +.      .....|..|+...+-..++  .
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p~------~~~~~i~~ia~G~~hs~~l--~   79 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------PA------ATQSGVDAIAAGNYHSLAL--K   79 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------CG------GGGSCCCEEEECSSEEEEE--E
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------Cc------cCCCCEEEEEeCCCEEEEE--E
Confidence            45555554432  2444 4 89999997654332210             00      0112567777654433333  4


Q ss_pred             CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeecc
Q 001224          446 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  525 (1120)
Q Consensus       446 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  525 (1120)
                       ||.|..|-.....++...   ..-...|..|+...+..  +++  . ||.|..|-......+-.-......|..++.  
T Consensus        80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~--  148 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG--  148 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--
T ss_pred             -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--
Confidence             899999977654333211   11134688777665433  233  3 899999986542222111112345666653  


Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEE
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  605 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  605 (1120)
                       .....++ -. ||.|..|-.......-.-......|..                     ++...  .+.++- .||.|+
T Consensus       149 -G~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~---------------------i~~G~--~hs~al-~~G~v~  201 (282)
T 3qhy_B          149 -GVYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDD---------------------VAGGI--FHSLAL-KDGKVI  201 (282)
T ss_dssp             -CSSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEE---------------------EEECS--SEEEEE-ETTEEE
T ss_pred             -ccCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEE---------------------EEecC--CEEEEE-ECCeEE
Confidence             2223333 33 799999976554332110000112222                     22222  223333 589999


Q ss_pred             EEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001224          606 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  654 (1120)
Q Consensus       606 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  654 (1120)
                      .|-......+..-.  .....|..++....... +. . ||.+..|-..
T Consensus       202 ~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h~~-al-~-~g~v~~wG~n  245 (282)
T 3qhy_B          202 AWGDNRYKQTTVPT--EALSGVSAIASGEWYSL-AL-K-NGKVIAWGSS  245 (282)
T ss_dssp             EEECCTTSTTCCCG--GGGSSCCEEEECSSCEE-EE-E-TTEEEEESTT
T ss_pred             EEECCCCCCCCCCc--ccCCCceEEEcCCCEEE-EE-E-CCEEEEecCC
Confidence            99754322221100  01124666665544333 33 3 8999999543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.55  E-value=12  Score=44.77  Aligned_cols=198  Identities=11%  Similarity=0.048  Sum_probs=103.3

Q ss_pred             CCcEEEEEeCC----CcEEEEEeecce--eeE-e-----ecccccceEEEEEccCCCEEEEEeCCC------CEEEEECC
Q 001224          877 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD  938 (1120)
Q Consensus       877 d~~~lasg~~d----g~v~vwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iWd~~  938 (1120)
                      ++.+++.|+.+    ..+.+||..+++  .+. .     +......-.++.+..+++.++.||.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            66777777753    368888887653  222 1     111111122233322777888887643      47788888


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceeeeccc---cCCCCCCeeEEEECCC
Q 001224          939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1012 (1120)
Q Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~--~v~i~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1012 (1120)
                      +.+-..   +....  .  ...-.+++.-.+++.++.| .++  .+.+||..+..-...-.   .......-.++.+..+
T Consensus       477 t~~W~~---~~~~p--~--~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          477 TREWSM---IKSLS--H--TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTEEEE---CCCCS--B--CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCcEEE---CCCCC--C--CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            743211   11111  0  1122334443477777774 322  79999998876443321   0011222233555555


Q ss_pred             -CcEEEEEEc--C-----CcEEEEEcCCcce-----eeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCC----
Q 001224         1013 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1075 (1120)
Q Consensus      1013 -g~~l~s~~~--D-----g~v~iwd~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~D---- 1075 (1120)
                       +++++.|+.  +     ..+.+||+.+.+-     -..+......+.      ... +++... ++.+++.|+.+    
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R------~~~-~~~~~~-~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR------YGS-QIKYIT-PRKLLIVGGTSPSGL  621 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC------BSC-EEEEEE-TTEEEEECCBCSSCC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc------ccc-eEEEeC-CCEEEEECCccCCCC
Confidence             777777775  2     3589999988872     111111000110      010 222222 26788888753    


Q ss_pred             ----CcEEEEecCCCCCCCC
Q 001224         1076 ----GGVHVFEPLESEGKWG 1091 (1120)
Q Consensus      1076 ----g~v~vW~~~~~~~~~~ 1091 (1120)
                          ..+.++|+.+.+  |.
T Consensus       622 ~~~~~~v~~yd~~t~~--W~  639 (695)
T 2zwa_A          622 FDRTNSIISLDPLSET--LT  639 (695)
T ss_dssp             CCTTTSEEEEETTTTE--EE
T ss_pred             CCCCCeEEEEECCCCe--EE
Confidence                468889988765  65

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=84.01  E-value=15  Score=41.17  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=61.6

Q ss_pred             cceEEEEEccCCC-EEEEEeCCCCEEEEECCCcccccceeeeccCCCC-----CCCCCCcEEEEccC----CcEEEE-Ee
Q 001224          909 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH  977 (1120)
Q Consensus       909 ~~V~~l~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~fspd----g~~la~-~~  977 (1120)
                      ..-++|+|.|||. .|+.+...|.|++++.+.... ............     ........++|+|+    +.+.++ +.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3467899999996 455556789999997543211 111111111100     01245688999997    443333 32


Q ss_pred             C------------CeEEEEEcCC----------ceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC
Q 001224          978 E------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1023 (1120)
Q Consensus       978 d------------~~v~i~d~~~----------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1023 (1120)
                      +            ..|.-|.+..          .+.+..+...........|+|.|||.+.++.+..+
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1            1344455532          12222222112223468999999998777666443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.10  E-value=54  Score=35.23  Aligned_cols=155  Identities=8%  Similarity=0.081  Sum_probs=87.5

Q ss_pred             cEEEEEcCCC--ceeeeecC------CCCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEeecceeeEeecccccc
Q 001224          846 KISLFNMMTF--KTMATFMP------PPPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSKR  910 (1120)
Q Consensus       846 ~i~vwd~~~~--~~~~~~~~------~~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~  910 (1120)
                      +|.+||+.+.  +.++++.-      ....+..+++.   |.   ++.++.... ..+-|.|+|+.+++.-+.+..+   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~---  200 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT---  200 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence            5777888877  77766532      13457888887   21   134444444 4678999999998876655321   


Q ss_pred             eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----CcEEEEEeCCeEEEEEc
Q 001224          911 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFET  986 (1120)
Q Consensus       911 V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----g~~la~~~d~~v~i~d~  986 (1120)
                           |.|+.....+.  +|.-.-|.                      ..+..+++||+    ++.|..+.-..-++|.+
T Consensus       201 -----~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V  251 (381)
T 3q6k_A          201 -----FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV  251 (381)
T ss_dssp             -----GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred             -----CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence                 34542111111  23222221                      25688899988    77877754444455554


Q ss_pred             CCce--------eeeccccCCCCCCeeEEEEC-CCCcEEEEEEcCCcEEEEEcCC
Q 001224          987 TKLE--------CVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1032 (1120)
Q Consensus       987 ~~~~--------~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~iwd~~~ 1032 (1120)
                      .+.-        .+..+-..+-...-..+++. .+|.++++--....|..|+..+
T Consensus       252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            4321        11111111111233456675 6777777777788999999875

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=82.14  E-value=89  Score=37.04  Aligned_cols=192  Identities=14%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             EEccCCCEEEEEe--C----CcEEEEEcCCCceeee-ecCCCC--------CeEEEEEecCCCcEEEEEe----------
Q 001224          831 ALSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM----------  885 (1120)
Q Consensus       831 ~~s~d~~~l~~~s--d----g~i~vwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~----------  885 (1120)
                      +++||+++++.+-  +    ..++++|+.+++.+.. +. ...        ....++|.. +..++++..          
T Consensus       136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~~~~  213 (711)
T 4hvt_A          136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEITSSL  213 (711)
T ss_dssp             ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBCTTS
T ss_pred             ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcCcCC
Confidence            3889999888752  2    3599999999877632 22 111        113457774 444554321          


Q ss_pred             CCCcEEEEEeecc--eeeEeecccccce-EEEEEccCCCE-----EEEEeCC---CCEEEEECCCcccccceeeeccCCC
Q 001224          886 DDSSIQIYNVRVD--EVKSKLKGHSKRI-TGLAFSHALNV-----LVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGR  954 (1120)
Q Consensus       886 ~dg~v~vwd~~~~--~~~~~l~~h~~~V-~~l~~s~d~~~-----l~s~s~D---g~v~iWd~~~~~~~~~~~~~~~~~~  954 (1120)
                      ....|+.|.+-+.  +-...+.+....+ .+...++++++     +++.+.+   ..+.+.+.+....   ...+.... 
T Consensus       214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~-  289 (711)
T 4hvt_A          214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL---KLQKINMP-  289 (711)
T ss_dssp             SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC---EEEECCSC-
T ss_pred             CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC---cceEeecC-
Confidence            1246888877553  2223344333333 34555677663     4554423   3345555543111   11111111 


Q ss_pred             CCCCCCCcEEEEccCCcEEEEE-----------eCCeEEEEEcCCce-------eeeccccCCCCCCeeEEEECCCCcEE
Q 001224          955 TPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLV 1016 (1120)
Q Consensus       955 ~~~~~~i~~~~fspdg~~la~~-----------~d~~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l 1016 (1120)
                      .     -..+..+.++.+++..           ..+.|.+.++.+..       ....+........+..+.+..+ .++
T Consensus       290 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~  363 (711)
T 4hvt_A          290 S-----DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF  363 (711)
T ss_dssp             T-----TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred             C-----cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence            0     1223455666666632           35678899987642       1222222233557888999876 567


Q ss_pred             EEEEcCCc--EEEEEcCCcc
Q 001224         1017 YACFLDAT--VCVFSAANLK 1034 (1120)
Q Consensus      1017 ~s~~~Dg~--v~iwd~~~~~ 1034 (1120)
                      ++...++.  ++++++.+++
T Consensus       364 ~~~~~~~~~~l~~~~~~~g~  383 (711)
T 4hvt_A          364 LATYDNVVAKVVTFTLENEQ  383 (711)
T ss_dssp             EEEEETTEEEEEEECEETTE
T ss_pred             EEEEECCEEEEEEEECCCCc
Confidence            77777765  6777776665

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=80.27  E-value=70  Score=34.66  Aligned_cols=207  Identities=10%  Similarity=0.035  Sum_probs=91.6

Q ss_pred             CcEEEEEeCCCcEEEEEeec-ceeeEee--cccccceEEEEEcc--CCCEEEEEeCCC----CEEEEECCCcccccceee
Q 001224          878 NNIIAIGMDDSSIQIYNVRV-DEVKSKL--KGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRFL  948 (1120)
Q Consensus       878 ~~~lasg~~dg~v~vwd~~~-~~~~~~l--~~h~~~V~~l~~s~--d~~~l~s~s~Dg----~v~iWd~~~~~~~~~~~~  948 (1120)
                      ...|.+|+..| +.+++... ++.-...  ......|.+|++.|  ++.+.+. +..|    .|... .+.++.  ...+
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s-~D~G~t--W~~~   96 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRS-DDGGGN--WTEA   96 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEE-SSTTSC--CEEC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEe-CCCCCC--ceEC
Confidence            34566677777 55555432 2211111  12235699999998  4555544 3343    23322 222221  1111


Q ss_pred             eccCCCCC--------CCCCCcEEEEcc---CCcEEEEEeCCeEEEEEcC--Cceeeecccc--------------CCCC
Q 001224          949 QIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETT--KLECVKQWVP--------------RESS 1001 (1120)
Q Consensus       949 ~~~~~~~~--------~~~~i~~~~fsp---dg~~la~~~d~~v~i~d~~--~~~~~~~~~~--------------~~h~ 1001 (1120)
                      ....+...        ....|.++++.|   .+.+.+.+..+.|...+-.  +-+.+.....              ....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~  176 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDG  176 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCC
Confidence            11100000        012466788886   3455554566665544321  1122211100              0123


Q ss_pred             CCeeEEEECCC-CcEEEEEEcCCcEEEEEcCCcceeeeeCC---CcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCc
Q 001224         1002 APITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1077 (1120)
Q Consensus      1002 ~~v~~l~~s~d-g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~ 1077 (1120)
                      ..|.+|.+.|. ...|+.+..++.|...+ +.|+.-..+..   ..++|.........+..++++|.++..|..+...| 
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence            46889999883 44455555555444432 22332222210   11122110000011237888886667777776544 


Q ss_pred             EEEEecCCCCCCCCCC
Q 001224         1078 VHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1078 v~vW~~~~~~~~~~~~ 1093 (1120)
                        ||....+..+|...
T Consensus       255 --l~~s~D~G~tW~~~  268 (394)
T 3b7f_A          255 --IYRMDRREGVWKRI  268 (394)
T ss_dssp             --EEEEETTTTEEECG
T ss_pred             --EEEeCCCCCcceEC
Confidence              44444444555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1120
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 6e-18
 Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)

Query: 323 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 382
           ++L    +P +    ++ +      + P ++   + ++L+  S    + F       L  
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79

Query: 383 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 442
           G N     ++ V S   LV R             L  +      + +  V +SPDG    
Sbjct: 80  GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 443 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 465
                 +++I+                                          D      
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 518
            +   +          P     +     D+ ++VWD+  G       ++     GH+  V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 578
           YSV        Q + S +LD  +K W   N  ++ D + P      + Y           
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313

Query: 579 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 634
                  V         L+   D  + FWD  S   L  +         +  +       
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 635 DGCLLAVSTNDNGIKI 650
           +  + A  + D   +I
Sbjct: 367 EYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-13
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 424
               ++   P     +  G+    + +W+  +              G     L +     
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250

Query: 425 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 473
            G   SV  V+++ DG           V++++    +        ++             
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 474 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 529
           V  +A +  ++   +++   D+ +  WD  +G    + +GH   V SV   +  ++    
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 530 QFIFSTALDGKIKAW 544
               + + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 824 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 870
           +++V     +++   V+S S    + L+N+      +    P                  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 871 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 924
           +A    ++  I  G  D  +  ++ +       L+GH   +  +A ++        NV  
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 925 SSGADSQLCVWS 936
           +   D +  +W 
Sbjct: 373 TGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 792  NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 851
            +  GK  A+ A         I     V      E              + +  G  ++  
Sbjct: 130  SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 852  M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 903
              +     +  +      T +A  P D   IA G  D ++++++        R+D     
Sbjct: 190  WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 904  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 961
              GH   +  + F+     +VS   D  + +W+      + +           T      
Sbjct: 250  GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 962  --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 1014
                V   Q+  + L   +   +  ++      +       +S    A    ++   +  
Sbjct: 310  FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 1015 LVYACFLDATVCVFS 1029
            +      D    ++ 
Sbjct: 370  VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 9e-09
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 433 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 488
           +   DG           V+++    G  V     ++     H   V  + F+   + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269

Query: 489 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 538
           ++   D+++K+W+  N   +   +   +    V     ++           ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 539 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 598
             +  W   +    +  +       ++A +                        N F   
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374

Query: 599 GDDFSIKFWDMDSV 612
             D   + W    +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)

Query: 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 424
            S  S+ F       ++ G+    + LW + +                 +          
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306

Query: 425 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 480
               V  V  + +            V  +    G+ +     +  H   V  +A +    
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363

Query: 481 -HPNKQLCVITCGDDKTIKVWD 501
             P   +   T   D   ++W 
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)

Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 513
           H   V  + FS+  + L     G +KT +V+  ++G+                       
Sbjct: 61  HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 514 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 571
              +  + SVC     + +F+ + A D  I+ W  +N    +  +   +   ++ Y   G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 572 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 610
            +   G   R++                      V           A   D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 611 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665
           +  L+  +D++       +     + F +DG  +   + D  +K+    +      +   
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 716
            +     T    K  +  ++         +G  DR            ++ + G    V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 717 LADVK--------PRITEESNDKS-KVWKLTEL 740
           +A                 S D   ++WK  ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 406 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 463
           K+WD+  G C               +N + + P+G+ F         +++      E+  
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 464 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
           +   D  + G+  ++FS   + L  +   DD    VWDA    +  +  GH+  V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 524 HHKENIQFIFSTALDGKIKAW 544
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-15
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 777 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 836
           +  +  L     T    SG   AS   +LW    G+      T +  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 837 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 893
           +   + S     ++            +        T ++F      ++  G DD +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 894 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
           +    +    L GH  R++ L  +     + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 1e-14
 Identities = 50/332 (15%), Positives = 99/332 (29%), Gaps = 49/332 (14%)

Query: 344 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 399
           SQ  +  + + +      RTL    +   +M +    + LL+  +  G + +W+  +  +
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNK 89

Query: 400 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 459
           +     +   +  C+       V   G+     I++       V  SR +     Y    
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 460 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 498
                 +I    G      +     Q                        ++   D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 499 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 558
           +WD   G  +  F GHE+ + ++C     N     + + D   + +        + Y   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 559 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 618
              C   +                   V F  +    LA  DDF+   WD         +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 619 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
                  +   +    DG  +A  + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)

Query: 873  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 932
                D  +   G  D+S ++++VR    +    GH   I  + F    N   +   D+  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 933  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 991
             ++     ++                   T V F +     L  ++     +++  K + 
Sbjct: 251  RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 992  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1029
                        ++    + D   V     D+ + +++
Sbjct: 305  AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 9e-10
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            V  +  +PD  LF         +++    G   +       H   +N I F        
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
             T  DD T +++D     +   +               ++ + + +   D     W   
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
                          + +  + DG                             D  +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339

Query: 608 D 608
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 1e-14
 Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)

Query: 630 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 689
           + F+    ++  ++ D  IK+     G    RT +   +  S    +   +   +++ +A
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79

Query: 690 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 749
                         + ++ G + +V S++ +       S  + K  K+ E+      ++ 
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 750 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 809
                              G  I + +++    +W     E  +  +    V   +    
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192

Query: 810 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 868
                 +  +  +           K   +++S S    I ++++ T   + T +      
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 869 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 928
             + FH      I    DD ++++++ +       L  H   +T L F      +V+   
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 929 DSQLCVW 935
           D  + VW
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
           +  H   V  + F      +  ++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 578
             +    S  +  K+  +        +          ++        + S D T      
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 579 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 627
           +           +  + +V+ +       +  +D +++ W + + +    +     +   
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 628 PRIRFNKDGCLLAVSTNDNGIKILATSDG 656
             I +  +    ++S         +   G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            V  V++   G           ++++ Y     ++    ++AH   V  + F      + 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304

Query: 488 VITCGDDKTIKVWD 501
            +T   D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 5e-08
 Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            V RVI+ P  S+   A     ++++ Y  GD  R    +  H   V DI+F H  K L 
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
             +      +  +      +      H     S+ P+       I S + D  IK W   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131

Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 604
                  +     W   +  + DGT        +++ V    T + +            I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 664
            +    S   ++          S   +  K G  L   + D  IK+   S G   L T  
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244

Query: 665 N 665
            
Sbjct: 245 G 245

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 7e-08
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 828 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 876
                +++ + + S S    + ++ + T +  A           +++ P+          
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 877 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 927
                        +  G  D +I++++V        L GH   + G+ F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 928 ADSQLCVWSSDGWEKQK 944
            D  L VW        K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 869  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 928
            T + FHP   +++    +D++I++++    + +  LKGH+  +  ++F H+  +L S  A
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 929  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 988
            D  + +W   G+E  +          + +   +        +   + + E Q        
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131

Query: 989  LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040
                           +     + D  L+ +C  D TV V+  A  + +  + 
Sbjct: 132  -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 901  KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 960
            K  L GH   +T + F    +V+VS+  D+ + VW  +        F +   G T + Q 
Sbjct: 10   KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64

Query: 961  DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1020
             +     +           +L  F+                  ++  +   +   + +  
Sbjct: 65   ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 1021 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1061
             D T+ ++                    V  +    L+ + 
Sbjct: 121  RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 4e-13
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 869  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 926
            +  A++  D   IAI  ++  + IY    ++     +LK H+ ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 927  GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 986
            G D    VW+  G   +    +          +     +               +  FE 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126

Query: 987  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1044
                 V + + +   + +    +  +S L+ A   D    +FSA   ++  R  P+ +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 9e-12
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            ++   W+ D +   +  + H V IY   G   V+ H E+  H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            +TCG D+   VW       +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582
                   +   +   +   S D           S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)

Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 645
             ++  + +     ++  +  ++    + +   +          + +  D   +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 646 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 705
               +                   A+R    +         + +   +           V
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 706 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 759
                     ++  +              + K +++         +         +    
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191

Query: 760 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 819
                 ++S   +  +  +A      W   +              L      + +    +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241

Query: 820 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
           ++ P   +         S V +       LF   +     +F          +       
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297

Query: 880 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 935
                  D                   H   ++ ++         +   ++G D  + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 936 SSDGWEKQ 943
                E  
Sbjct: 357 DVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 367 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 426
            +          LL  G+      ++    +E         W        L        G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 486
             V+ V +S +GS          V +        V       +    +  + F   +   
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256

Query: 487 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 546
            ++  G D    ++   + A +  F G            +          LD K  +   
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313

Query: 547 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 606
              G+ +D        + ++  + G                     ++F   G D  +  
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355

Query: 607 WDMDSVQ 613
           WD+ S++
Sbjct: 356 WDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 458 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 508
           G           H   V+ I+     K  C    T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-11
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)

Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 526
           +  H   V          ++  ++  DD T+KVW A  G       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 527 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 573
             I       L                                 G+             +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 633
                      V        R ++   DF +K WD ++   L ++        +      
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184

Query: 634 KDGCLLAVSTNDNGIKI 650
            DG  +   + D  I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 6e-10
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)

Query: 333 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 392
           +  GH+     SQ          T        +            T  +   ++ +  + 
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 393 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 452
                  L + + +        M   AA+          V  + D  +  V        +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170

Query: 453 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512
           ++  G       L+ D                   V++   D +I+VWD   G   +   
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 572
           GH++    +          + S   D  +K W           + P +  + +       
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265

Query: 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 629
                              KN  + + DD ++K WD+ +   ++ L ++++ G      R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 630 IRFNKDGCLLAVSTNDNGIKI 650
           IR +    + AV + +   + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 403 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 462
            + +VWD+   +      +    G            ++     +   V+I+    G  ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 517
                + H   V  + F+       VIT  DD T+K+WD   G            G    
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 518 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 547
           V+ +   +          + +G  + K  + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 819 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 878
           T +  +       L  ++  V   +   + ++++ T + + T   P    + +     + 
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 879 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 929
           N +    DD ++++++++  E    L      G    +  +  S+   V      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 930 SQLCVWSSD 938
           ++L V   D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)

Query: 872  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 931
                   N I  G DD+++++++    +    L GH+  +                 D+ 
Sbjct: 22   CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69

Query: 932  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 991
            +   S+D   K  N              S  R     ++       +  L +++    +C
Sbjct: 70   IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 992  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051
            +   +   ++              V +   D  V V+          +            
Sbjct: 130  LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175

Query: 1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1081
               H   + +   +      G  D  + V+
Sbjct: 176  ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 6e-10
 Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 516
            AH   +  ++  +       ++C  D  +KVWD      +   +            H  
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576
            V          +  + +T+  G +  +         D      +       +D  +   
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120

Query: 577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 631
            F     G        +R +A     +   W       +S  L  +      L  +    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 632 FNKDGCLLAVSTNDNGIKILATSDG 656
                   +V  ++ G+     ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 5e-07
 Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)

Query: 507 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
           K +I      + H+A ++SV   +     F  S + DG +K W    L +    +     
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 619
                                L  ++ D  +   +A       + F+ +    +    I 
Sbjct: 57  F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 620 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 677
               L  S   + +        S +      L      G   +  F   A +++  + N 
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167

Query: 678 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 736
            PT+                 +   ++ S    +    S+    +  I    N+ +    
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210

Query: 737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 796
                 P      +      +  I  + F+  G+ +     +          TE      
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 797 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 856
           + +               ++ V                 ++   +   GK+  +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 857 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 912
            + T              LA     +++   G+ D                +K   K   
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366

Query: 913 GLAFSHALNVLVSSGADSQLCVWSSDG 939
               +     L     D  +  +   G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-06
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)

Query: 334 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 393
                 S+S +  +S   +L  TV   +       S+D     + L+  G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211

Query: 394 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 453
           + +   L     +   +   +            +       +  G +             
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 454 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 513
                   +  L   AH   V  ++F+   +   + + G D  ++ WD     +      
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329

Query: 514 HEAPVYSVC 522
           H   +    
Sbjct: 330 HCDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 1e-05
 Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)

Query: 584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 643
            +       +  ++   D  +K WD   +      D         +   +    L A+  
Sbjct: 16  DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74

Query: 644 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 700
           +   + ++AT+   G +   R             +           +  A    A     
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 701 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760
            +  +    + G       +           S     +   E        +  +  AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820
                  S   ++A   N   +      T R                  S I  +N +  
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236

Query: 821 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 872
                     A++ + +     +  +      +        + +              L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 873 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 928
           F+      +     D  ++ ++V+  E  + L  H   I      LA     + L   G 
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354

Query: 929 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 969
                V+     +K     +      +      D  +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)

Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 527
           HV  +  I        L   T      +  +  T   +       +  +           
Sbjct: 65  HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 528 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 576
                          + +T + G    W +         +         + + +   T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178

Query: 577 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 609
                S      D ++   +A G ++ +++  ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 7e-10
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 528
           H   ++ I   + +  +  +  G +    +++  +G             ++SV    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 529 IQFIFSTALDGKIKAWLYD 547
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)

Query: 461 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 520
           V Q   +  H+  V        N    VIT  DDK I+V+D+ N        GH+  V++
Sbjct: 2   VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 580
           +   H      + S               GS                             
Sbjct: 59  LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

Query: 581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 638
                +         +    D ++  W +     +     +   P            +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 8e-07
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 850 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 908
                      F       + +      +NI+  G ++    IYN+R  + V + +   +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324

Query: 909 KRITGLAFSHALNVLVSSGADSQLCVWSSD 938
            +I  + F     ++ +   D Q  +   D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            ++N +  G DD  I++Y+    +   +L GH   +  L ++H   +LVS   D  + VW 
Sbjct: 22   EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 937  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
                           T R          ++   +       +  L +++  K   V    
Sbjct: 81   IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 997  PRESSAPITHATFSCDSQLVYACFLDATVC 1026
                   + H        +       A+V 
Sbjct: 136  EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 462 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 520
           R  L+ I         +     + Q  +++   D TIK+WD      + I  GH   V  
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 573
           +    +  I     + +                  EA              ++       
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 574 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 624
                      +        V   D      ++A  D +IK W+  + + + +++     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 625 PASPRIRFNKDGCLLAVSTNDNGIKI 650
                        L+   ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 473 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 532
           G          +   V++   D TI++WD   GA   + EGH      +    + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231

Query: 533 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 592
            S A DGKIK W  D + +       G  C          RT      R   + QFD  +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277

Query: 593 NRFLAAGDDFSIKFWD 608
            + +++  D +I  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 815 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 873
           T +   +          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 874 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 924
              DN  I  G  D  I+++++                 L  HS R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281

Query: 925 SSGADSQLCVW 935
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 465
           ++WD+   +      L    G          D            ++++      + R   
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 466 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 501
                  +  H G V  + F    +   +++   D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 877  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
            D+  I  G+ D++I+I++    E K  L GH+  +  L +   + +             S
Sbjct: 24   DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72

Query: 937  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 996
            SD   +  +                       + +      +  +A+++      +    
Sbjct: 73   SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 997  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056
                           D + + +   D T+ V++ +  +              V + N H 
Sbjct: 133  VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-------------VRTLNGHK 178

Query: 1057 LVIAAHPQEPNEFALGLSDGGVHVFE 1082
              IA           G SD  + +++
Sbjct: 179  RGIACLQYRDRLVVSGSSDNTIRLWD 204

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            +  + + P G    V      V++   +         ++  H   V  + F++  K   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
            ++ G D  +  W    GA  +      + V S      +  ++I + + D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)

Query: 806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 865
                 +     +   +    +          ++             +            
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265

Query: 866 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 925
                L F             D+ +  +         +    S  +     S     +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 926 SGADSQLCVWS 936
              D +  V+ 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 49/314 (15%)

Query: 359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GACSMP 416
            TLN G    ++      + +               G +        KVWD+       P
Sbjct: 46  NTLNHGEVVCAVTISNPTRHVY-------------TGGK-----GCVKVWDISHPGNKSP 87

Query: 417 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 476
           +      +    +      PDG    V      + I+         +     +       
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 477 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 536
                        + G+     + +     +  + +       + C     +   +++  
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV----------- 585
           LD  +++W          ++       ++ Y   G     G    ++ V           
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 586 ---------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 636
                    ++F      F++ G D  +  W       +        + +      + D 
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS---CDISVDD 318

Query: 637 CLLAVSTNDNGIKI 650
             +   + D    +
Sbjct: 319 KYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 491
           + ++  G  F      +++  +    G  + Q          V     S  +K +  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324

Query: 492 GDDKTIKVWD 501
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)

Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 529
               +  + +    + L V       +       N   +Y    HE+ V S+   +    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278

Query: 530 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
            +  ST  D  + AW     G+ +          +   S D                   
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318

Query: 590 TTKNRFLAAGDDFSIKFWD 608
                 +    D     ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 5e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 470 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 528
           H   +  ++ S   K L   +   +  I  WD + G    +F + H   +  +    K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 529 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 569
           +  +     D  +K       G         +  +     A
Sbjct: 69  LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
           WSPD          + V +++ +   +    ++    +  VN + + +      +++ G 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288

Query: 494 DKTIKVWD 501
           D  IK W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 481 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 538
                + + T   D ++ VW+    +     I   H     +      E    I S   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289

Query: 539 GKIKAW 544
             IK W
Sbjct: 290 SNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 899 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944
            +     GH+K IT L+ S     L S+ A+  +  W        +
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 8e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 847 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 904
                               A         DN  +A G  D+S+ ++N+        +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 905 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 936
             H+              +VS+G DS +  W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 2e-08
 Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)

Query: 369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 428
            +   P +  LL             + S +  +     V+     +  +           
Sbjct: 16  DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58

Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 467
           +    +  +  L     +     +     G    Q L                       
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 468 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 503
                                   +++   V +  F+       +I   ++  ++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 504 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 561
                          Y +       +  +    +++DG++    +D+ G   +     + 
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235

Query: 562 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 621
                +  +   T   +   S   ++F         AG D  I  W++ + + + +    
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290

Query: 622 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
                   ++      +L ++T+D+  K 
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 463 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 518
           Q ++I  A    ++DI        L  +    D ++ V+     AK         ++ P+
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 519 YSVCPHHKENIQFIFST 535
                    ++Q    T
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)

Query: 429 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 476
            +  +   +   +  +     V +  +    +             R +L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 477 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 535
           I FS  +K L   T G D  I  W+     K   F   +E  V  +          +   
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 536 ALDGKIKAW 544
             D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)

Query: 428 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 487
            ++ +   P  SL  +      + +Y +    +    L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71

Query: 488 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 547
            I  G  +   +     G+  +    +      +C   K     + + + DG I+     
Sbjct: 72  -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 548 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 607
           N G  V          T   +   T                    +R +   ++  ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175

Query: 608 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 665
            +   +       + GL    R      K+    A S+ D  + +    D      + + 
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 666 LAYDASRTSENSKPTISPISAAA 688
            A+   R +        P+++  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 39/376 (10%), Positives = 76/376 (20%), Gaps = 37/376 (9%)

Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 644
                     +      ++   D+ S  +  S          P       D     V  N
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59

Query: 645 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 704
             G       D  +        +             ISP      A        +    +
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 705 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 764
                         + KP  T     +  +                              
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151

Query: 765 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 824
             + G+  +A        +   + T                         +     S   
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210

Query: 825 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 884
                           +         ++ T KT            F       +      
Sbjct: 211 -YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY- 268

Query: 885 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944
              + +  Y+++  ++             +AF    + L   G  + L V++ D  EK K
Sbjct: 269 GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Query: 945 NRFLQIPTGRTPTAQS 960
           N  +++P G   T   
Sbjct: 328 N--IKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)

Query: 358 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 417
           +  +     P +    P  +T  ++  + GDI   ++ + +     N             
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

Query: 418 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 477
             A+   P         +P   L      +               + +        V  +
Sbjct: 93  SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 478 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 531
             +              +     K        N  ++          +       E    
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 532 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 591
                     +     +L             T     AD T  Y              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261

Query: 592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 651
           K+     G    +  +D+   +L+ + +          + F+K G  L +    N + + 
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318

Query: 652 ATSDG 656
                
Sbjct: 319 NPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 5e-06
 Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)

Query: 364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 423
           G S  S    P     +    N           +   +    +V+               
Sbjct: 88  GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142

Query: 424 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 466
            P   V  +  + DGSL+      + + + +          +  R+             +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 467 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 525
              H   +        + +    T          D  T       F       ++     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 585
           K+  Q         ++  +        +           +A+   G + Y          
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307

Query: 586 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623
                        G    +  ++ D+++ + +I   GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)

Query: 327 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 386
           V ++  +  G  +           +      T  L   +        P         +  
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 387 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 437
            +  +    +R +   ++             DL       Q             +    D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263

Query: 438 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 497
            +   +    + +  Y       ++              +AF     +L     G    +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315

Query: 498 KVWDATNGAK 507
            V++     K
Sbjct: 316 AVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 22/193 (11%), Positives = 42/193 (21%), Gaps = 20/193 (10%)

Query: 477 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 535
            A    ++ +  I       + V D  +    +      +    +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 536 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 589
              G I            +          GR   + A S DG   Y              
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109

Query: 590 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 649
           T +           ++ +          +           +R   DG  L V+  D    
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKM 168

Query: 650 ILATSDGIRLLRT 662
            + T      L  
Sbjct: 169 DVKTGKYTVALPL 181

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 9e-08
 Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)

Query: 365 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 424
           +    + + P    +                  +   +R     D G   +P        
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 425 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 477
               V  V +SP               V ++ +    E          E     G ++DI
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 478 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 537
           ++    ++LCV+  G D         +G       GH   + +        ++ +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 538 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 592
              +         S  D        +   + +S D                    +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 593 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 630
                                  +F   G D +I+ WD+ + + +     D     + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 631 RF--NKDGCLLAVSTNDNGIKI 650
                 +G ++++S  D  +  
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 487 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 544
              T G D TI+VWD T     +++  +  +     V      N   I S +LDG +  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 857 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 908
           ++   +PP P+      T L++ P  N I       + ++  +    +V    +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 909 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 966
             +T + FS       L S     ++ VW     ++  +  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 967 HQDQIHFLVVH 977
             +     VV 
Sbjct: 124 DFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)

Query: 295 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 352
           PT  ++ YP G S  +    R +   D    PV    V FTGH  S   +  FS  +   
Sbjct: 27  PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 353 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 404
                     V           +     V+    ++   + DI     G R       R+
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 405 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 464
                +   S      +           +                V  Y           
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 465 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 524
                    V D+ FS  + +  +    D K       +    +YI +  E     +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 525 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582
              + Q   +   D  I+ W         +   +        +   A G           
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307

Query: 583 LGVVQFDTTKNRFLAAGDDFSIKFWDM 609
                      R ++   D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 850 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 909
                F         P      A    D+   A    D++I++++V   +   K     +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 910 RITGLAFSHAL---NVLVSSGADSQLCVW 935
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)

Query: 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 415
           T+T+ ++       M   P ++ L +       +  + +   +  +    +         
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80

Query: 416 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 475
                       S+  +     G    V          +          +++   + G +
Sbjct: 81  ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131

Query: 476 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 535
               S  N+ L V     D+      + +G            V    P H      +F  
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186

Query: 536 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 595
                      ++     + + P      +         +   R  +   +  D  ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245

Query: 596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 652
                   I  + +     + S +        PR    +  G  L  +    + I +  
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 4e-07
 Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)

Query: 589 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 648
           D      +   D   I   D DS +++  ID  G        R +  G  L V   D  I
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85

Query: 649 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 703
            ++         +  E      +R+ E+             A A           +    
Sbjct: 86  DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 704 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 760
              +      V +     + +      S++  +     + +      + +  +NL  T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 820
               F   G       S+  + +     + + +   +       L               
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 821 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880
            +P+           D  + S  G          +K +A        + F+  HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 881 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 920
                         S+ +++++  + K ++   +         KR+    ++        
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378

Query: 921 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 953
           +V       S L V      + +   K+  L  PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 6e-05
 Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)

Query: 351 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 409
            ++ ++    +     P           L  V   + G I L +  S++  +++      
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60

Query: 410 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 467
                           G +V+    S  G    V      + +         +V +    
Sbjct: 61  ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 468 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 527
                  +         +  +          + D      + I       V +   H + 
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587
            +  I ++    +    + +  G  +          T+           G          
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213

Query: 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 623
           +D++   F+ A ++ +         + L+++   G 
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 457 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 516
           G DEV + +    H  G+  +  +       +I+   D  I  W +++       + H  
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 517 PVYSVCPHHKENIQFIFS 534
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 850 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 908
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 909 KRITGLAFSHALNVLVSSGADSQLCVWS 936
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 491
                +  L         + IYS     ++ + L   AH  GVN++ +  P+    +++ 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275

Query: 492 GDDKTIKVWD 501
           G D  IK W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 898 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 942
           DEV   + GH+K IT L  +     L+S   D ++  WSS    +
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)

Query: 592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 650
           ++  LA      +   D + + +   I      P          G +   +      +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 651 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 710
           +    G  L R   +   +  ++   +  +    + A   +     L         +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 711 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 765
           + +  S         +      + D SK++ L          +  L E+          +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 766 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 822
                  +     +  ++       R + + +               +G M   +V   +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 882
                     +K  ++        +  F++    ++    P P +   +     D + + 
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295

Query: 883 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 915
           +G     +  Y+    E K ++         LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 411
            ++    +  S       P  +TL +  + V            R+ L + +         
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 412 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 468
           A       A  +D          +      +   V            +   +V       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 469 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 527
              G +    ++                +   D   G          +   +S   +  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 587
              F         ++++  +   + +          ++  S DG+  +            
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295

Query: 588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 635
                      G    +  +D ++++    +D  G      AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)

Query: 406 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 464
            V D    ++  +   + D G +    + +P G +     ++   +       G+ + + 
Sbjct: 14  VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 465 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 523
                     +    +  P+ +   I     +           +  +++           
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 524 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 575
             ++     ++         G+    +    G+ V+ +    W        D    +   
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 617
           +     +          +          +   D+++ ++                     
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 618 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 656
                        D +         LP S   +  + DG  + +      +        
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)

Query: 337 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 396
            S  +   +     +    T+       S        P    +     + G +      +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 397 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 453
           R+ +   +   +  G  +M L+   +       + V     + + +      + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 454 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 507
                  +++             +  S     +     G    +  +DA    K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)

Query: 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 414
             +  +    S P  +   P       +   V      E G  +   +            
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 415 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 474
                  ++   +  +  +     + +  A  + ++  Y            ++      +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317

Query: 475 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 506
            D+  S   K +  +   DD  I  +      
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)

Query: 352 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 410
           D+  T    + +      +      +   + GT  GD +G+++  + +            
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 411 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 448
                                           + +     +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 449 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 504
             +   Y         +E            +D A +       +            D   
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 564
               +      +  + +                          N   +            
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 565 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 624
                  +            V         +  A +   +  +D+ + ++    +    L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 625 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 656
             S       D   + V  +D  I        
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)

Query: 866  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 925
            P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3    PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 926  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 985
             G      +   D    +  +F +                       F ++         
Sbjct: 60   HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 986  TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1041
            T      +  +     S      A            ++   + V+     K+      
Sbjct: 120  TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)

Query: 594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 651
             +A          D+    +L     +       R     D  +  +     G  + I 
Sbjct: 16  DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71

Query: 652 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 711
               G             A     N K  +                 +     V      
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127

Query: 712 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 771
             +                  K                    ++   KI      NS + 
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 831
             A  +++ +L +   R+   S  +   + + ++   P  I +     +          +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 891
            +                 +   ++ +          +                +   + 
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301

Query: 892 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 944
            Y+V+      K+      +T L  S     ++    D ++  +  +  E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)

Query: 434 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 492
           +SP DG L     SR    I    G   ++           +  +      K   +    
Sbjct: 10  FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 493 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 552
           +   + ++D   G K   FE +   V+++          + +   +              
Sbjct: 64  EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 553 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 612
                      T++ ++                      K+         +I  +DM+  
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169

Query: 613 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 672
           +      A           F+ D   L   +  +                          
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 673 TSENSKPTISPISAAAAAA 691
               +   + P S  + A 
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)

Query: 426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 483
           G +V+    S  G    V      V +      +   V +                   +
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 484 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 543
           K              + D      + I             H +  +  I ++    +   
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 544 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 601
            + +      VDY       TT   +            R L     D +   F+ AA   
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228

Query: 602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635
             +   D    +L+   D  G  P   R      
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 796 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 855
           + +  V       P+  M   D+               +N   V     G+I+L +  T+
Sbjct: 8   RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52

Query: 856 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 914
           +          A             + +   D  + + ++ + E  +  +         +
Sbjct: 53  EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 915 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 965
             S          +  +    Q  +   +  E +K +  +  T        + RV 
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)

Query: 472 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 531
           G    +  + P         G   ++      +     I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 532 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 567
             S  + G ++ W        +    P         
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 868 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 927
           A  L   P   + I      S +    V           HS + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 928 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 973
               + +W +          + + +G       D+  +        
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 487 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 543
            + +   DKTIK+W+      +         E     +        Q + S + +G I  
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307

Query: 544 W 544
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 7e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 851 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 909
               F+  +        + F      D   IA    D +I+I+NV   +V+  +   ++ 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 910 RITGLAFSHALNVLVSSGADSQLCVWSSD 938
               L        LVS  A+  +   + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)

Query: 403 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 462
            +     +          +  +          SP G           V+I+       + 
Sbjct: 38  TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 522
           +   I    G V DI++   +K++  +  G ++   V+    G       G    + SV 
Sbjct: 95  KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 582
                  + I  +  +                 E      +             G     
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 583 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 615
           +     D TK                            +  +A  D +IK W++ ++++ 
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 616 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
            +I     +    ++        L   + +  I  
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 30/261 (11%), Positives = 57/261 (21%), Gaps = 12/261 (4%)

Query: 259 TVTHPAVSGGAIGLGSPSIPAGTSLSHSALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIG 318
             T       A      + P  TSL+           +               KR   + 
Sbjct: 89  LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148

Query: 319 ISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT 378
               I                    +       ++  T               +      
Sbjct: 149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 208

Query: 379 LLLVGTNVGDIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVI 433
           L+   T  G I   ++ S +   L   +         G      Q          +   +
Sbjct: 209 LVWP-TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--L 265

Query: 434 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 493
                  +    +   V +     G+ + +          ++ I  S   K L       
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTG 321

Query: 494 DKTIKVWDATNGAKQYIFEGH 514
           DKT+ + DA +G +       
Sbjct: 322 DKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)

Query: 425 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 474
            G  +   + + DGS    A +             V+++              DA    V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 475 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
                  + +   K L          + V D    A + + +  +               
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160

Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 584
             F    DG +    +   G+                    AYS    R         + 
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219

Query: 585 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 641
            +   +   +FL A +  +                +                        
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275

Query: 642 STNDNGIKILATSDGIRLLRTFE 664
            T    + +L    G   L  FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)

Query: 415 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 474
           + +       P       +   DGSL  VA+             +     +        +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTE-------GTPEITHTEVFHPEDEFLI 197

Query: 475 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 532
           N  A+S    +L   T      I   D ++G  +++   E       +         Q  
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 533 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 575
           +                           + D   G R+     G    ++  S D     
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 576 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 635
                              +  +  D ++   D +S + L S++  G  P    I     
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354

Query: 636 G 636
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)

Query: 544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 603
           ++ D    RV     G +      + DG+                 T  +R         
Sbjct: 31  FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79

Query: 604 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 663
           ++ +D  ++     I                D     V T                L   
Sbjct: 80  VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116

Query: 664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 723
                    +   +   +     A                 +     +       D    
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171

Query: 724 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 783
                 + +     TE+  P     +  P               S  A   +       +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218

Query: 784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 843
            +   +  ++          +  +              +         + + D +    +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 844 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 902
              + + +  T + +A F         +     +   + A+   D ++ I++    E   
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337

Query: 903 KLKGHSKRITGLAFS 917
            +         +  +
Sbjct: 338 SVNQLGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 355 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 407
             VT T+  GS+PM     P    + +   +  D+ + +  +   +              
Sbjct: 22  NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81

Query: 408 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 452
                                +     A     G S   +  SPDG    V  +      
Sbjct: 82  SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141

Query: 453 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 512
                   V   + +     G+               +        V +           
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196

Query: 513 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 572
             EA    +  + +    ++ +        + +             G     +A + DG 
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256

Query: 573 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 618
           + Y                    +A     ++   D  +  +  ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 427 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 486
            S   V      +                 G +++   + +         IA + P+ + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257

Query: 487 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 517
             +      T+ V D             + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 430 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 489
           + ++            +       +   G          ++    + I  +         
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331

Query: 490 TCGDDKTIKVWDATNGAKQYIFEGHEAP 517
                + + ++DA +   Q   E  + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)

Query: 425 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 470
            G  ++  +    GS F +A   ++R         V+++       +           + 
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 471 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 530
              V+ I     +  L +                 +   + +                  
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177

Query: 531 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 590
               +     + A       +                +     + Q  +    G++ +  
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 591 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 650
             +                           +        +   K+   + + T ++    
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 651 LATSDGIRLLRT 662
           LA ++    +  
Sbjct: 290 LAAAENTSSVTA 301

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)

Query: 814 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872
              +  D      V    A  K  ++          +      +      P P     L 
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264

Query: 873 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 921
             P     IA G    ++ +  + ++D++          I              F    N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324

Query: 922 VLVSSGADSQLCVWSSDGWEKQ 943
              +   DSQ+C W+     K 
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1120
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.03
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.87
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.87
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.79
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.69
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.16
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.54
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.52
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.43
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.4
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.39
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.36
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.19
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.18
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.17
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.11
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.04
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.89
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.5
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.48
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.96
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	95.35
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.61
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.54
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	93.14
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.22
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	91.02
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.95
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.45
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.43
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	84.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.62

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-35  Score=326.28  Aligned_cols=305  Identities=18%  Similarity=0.319  Sum_probs=255.1

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEe
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  545 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  545 (1120)
                      +|+||.+.|++|+|+|+++  +|+||+.||+|+|||+.+++++.++.+|...|.+++|++  ++.++++++.++.+.+|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccccccccccccc
Confidence            6899999999999999999  799999999999999999999999999999999999854  557999999999999999


Q ss_pred             cCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCC
Q 001224          546 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  625 (1120)
Q Consensus       546 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  625 (1120)
                      .........+..+...+..+.+++++                     +.+++++.|+.+++||+.+++.+..+..+..  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--  144 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--  144 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred             ccccccccccccccccceeeeccCCC---------------------ceEEeeccCcceeEeecccceeeeEEccCCC--
Confidence            88776666666665555555555554                     5899999999999999999999999886644  


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001224          626 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  705 (1120)
Q Consensus       626 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1120)
                      .+.+++|++++.+|++++.|+.|++|+..++ .....+                                          
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~------------------------------------------  181 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL------------------------------------------  181 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEE------------------------------------------
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEE------------------------------------------
Confidence            6889999999999999999999999998765 221111                                          


Q ss_pred             ccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          706 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       706 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                                                                      .++...+..+.++|++........        
T Consensus       182 ------------------------------------------------~~~~~~i~~~~~~~~~~~~~~~~~--------  205 (317)
T d1vyhc1         182 ------------------------------------------------REHRHVVECISWAPESSYSSISEA--------  205 (317)
T ss_dssp             ------------------------------------------------CCCSSCEEEEEECCSCGGGGGGGC--------
T ss_pred             ------------------------------------------------ecCCCCceEEEEeeccccceeecc--------
Confidence                                                            124566778888877653221111        


Q ss_pred             ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC
Q 001224          786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  864 (1120)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~  864 (1120)
                                                             ..........++.++++++ |+.|++||+.+++.+.++.+|
T Consensus       206 ---------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         206 ---------------------------------------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             ---------------------------------------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ---------------------------------------ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence                                                   1122233445677888888 999999999999999999999


Q ss_pred             CCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          865 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       865 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                      ...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 899999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=324.90  Aligned_cols=293  Identities=13%  Similarity=0.168  Sum_probs=240.1

Q ss_pred             ceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          356 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       356 ~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      +..++++|...|+||+|||+|++ ||+|+ ||.|+|||+.++.....              .......+|.+.|.+++|+
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s  106 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred             eEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence            45677789999999999999995 88887 89999999987654321              1111356799999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      |||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|.
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  183 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            99999999999999999999865432 2336778999999999999999  79999999999999999999999999999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEE
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  595 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l  595 (1120)
                      ..|.+++|++  ++..+++++.|+.|++||+++.+....+. +..                     .+.+++++|+++++
T Consensus       184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~---------------------~i~~l~~~~~~~~l  239 (337)
T d1gxra_         184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS---------------------QIFSLGYCPTGEWL  239 (337)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS---------------------CEEEEEECTTSSEE
T ss_pred             cccccccccc--cccccccccccccccccccccceeecccc-ccc---------------------ceEEEEEccccccc
Confidence            9999999864  45799999999999999998765443322 223                     44555566666789


Q ss_pred             EEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCC
Q 001224          596 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  675 (1120)
Q Consensus       596 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  675 (1120)
                      ++++.|+.+++||+.+++.....   .+...|.+++|+|++++|++++.||.|++||..++. .+..             
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~-------------  302 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQ-------------  302 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEE-------------
T ss_pred             ceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEE-------------
Confidence            99999999999999988765443   334579999999999999999999999999987662 1110             


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcc
Q 001224          676 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  755 (1120)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  755 (1120)
                                                                                                    ..
T Consensus       303 ------------------------------------------------------------------------------~~  304 (337)
T d1gxra_         303 ------------------------------------------------------------------------------SK  304 (337)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          11


Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeee
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKW  786 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~  786 (1120)
                      |...|.+++|+|++++|++++.||.|+|||+
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            5678999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=317.34  Aligned_cols=306  Identities=16%  Similarity=0.314  Sum_probs=263.1

Q ss_pred             eeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          359 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       359 ~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      .+.+|.+.|++|+|+|+++ +|++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG   71 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeeccc
Confidence            4557999999999999999 599999999999999999987763                   77899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      .++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            999999999999999999877544   5778999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE
Q 001224          519 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       519 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      .+++|++  ++.+|++++.|+.|++|++........+..+...+..+.++|++......... ..........+..++++
T Consensus       147 ~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         147 RMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred             eeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEec
Confidence            9999854  55799999999999999999999888999999999999999988643332222 23334455667889999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCC
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  678 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1120)
                      +.|+.|++||+.+++++..+..|.  ..|.+++|+|++++|++|+.||.|++||+.++ +.+..+               
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~---------------  285 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL---------------  285 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE---------------
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEE---------------
Confidence            999999999999999999998664  47999999999999999999999999998766 222222               


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccc
Q 001224          679 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  758 (1120)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~  758 (1120)
                                                                                                 .+|..
T Consensus       286 ---------------------------------------------------------------------------~~h~~  290 (317)
T d1vyhc1         286 ---------------------------------------------------------------------------NAHEH  290 (317)
T ss_dssp             ---------------------------------------------------------------------------ECCSS
T ss_pred             ---------------------------------------------------------------------------cCCCC
Confidence                                                                                       12677


Q ss_pred             cEEEEEEcCCCceEEEeccCceEEEee
Q 001224          759 KISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       759 ~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      .|.+++|+|++++|++++.||.|++||
T Consensus       291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         291 FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            899999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-34  Score=322.91  Aligned_cols=328  Identities=18%  Similarity=0.263  Sum_probs=251.0

Q ss_pred             EEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCce
Q 001224          381 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE  460 (1120)
Q Consensus       381 a~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~  460 (1120)
                      ..+..++.+.+|+....+.... .+.              ...+|.+.|+||+|||||++||+|+ |++|+|||+.+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~-~l~--------------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~   95 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDV-ELH--------------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL   95 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEE-EEE--------------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred             cccCCCCcEEEeCCCCCcceee-eeE--------------eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence            3566778889999876554321 100              1236999999999999999999987 89999999998876


Q ss_pred             eeee---------------eeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeecc
Q 001224          461 VRQH---------------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  525 (1120)
Q Consensus       461 ~~~~---------------~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  525 (1120)
                      +...               ....+|...|++++|+|+++  +|++|+.||.|++||...++.+..+.+|...|.++++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (388)
T d1erja_          96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP  173 (388)
T ss_dssp             EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc
Confidence            5422               12235777899999999999  799999999999999999999999999999999999865


Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEE
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  605 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  605 (1120)
                        ++..+++++.++.+++||............+...                     +....+.+++++|++++.||.|+
T Consensus       174 --~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~~~~d~~i~  230 (388)
T d1erja_         174 --SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV---------------------TTVAVSPGDGKYIAAGSLDRAVR  230 (388)
T ss_dssp             --TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---------------------EEEEECSTTCCEEEEEETTSCEE
T ss_pred             --ccccccccccceeeeeeecccccccccccccccc---------------------ccccccCCCCCeEEEEcCCCeEE
Confidence              4578999999999999999875544433333222                     22233344567899999999999


Q ss_pred             EEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCC
Q 001224          606 FWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  680 (1120)
Q Consensus       606 iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1120)
                      +||..++.....+...     .+...|.+++|+|++++|++++.||.|++||+.++.... ....               
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~---------------  294 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DSKT---------------  294 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------------
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc-cccc---------------
Confidence            9999999887776422     234578999999999999999999999999987652110 0000               


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccE
Q 001224          681 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  760 (1120)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i  760 (1120)
                                                                                                 .    
T Consensus       295 ---------------------------------------------------------------------------~----  295 (388)
T d1erja_         295 ---------------------------------------------------------------------------P----  295 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------c----
Confidence                                                                                       0    


Q ss_pred             EEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE
Q 001224          761 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  840 (1120)
Q Consensus       761 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  840 (1120)
                            ..+.         ....+                                    ..|...|.+++|+|++++|+
T Consensus       296 ------~~~~---------~~~~~------------------------------------~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         296 ------NSGT---------CEVTY------------------------------------IGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             ---------C---------EEEEE------------------------------------ECCSSCEEEEEECGGGCEEE
T ss_pred             ------cccc---------eeeec------------------------------------ccccceEEEEEECCCCCEEE
Confidence                  0000         00000                                    01778899999999999999


Q ss_pred             EEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEE------ecCCCcEEEEEeCCCcEEEEEee
Q 001224          841 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF------HPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       841 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~------sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      +|+ ||.|++||+.+++++.++.+|.+.|+++++      +| ++.+||+|+.||+|+||+++
T Consensus       325 sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            998 899999999999999999999999999985      56 78999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=319.49  Aligned_cols=282  Identities=12%  Similarity=0.172  Sum_probs=239.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      |...|.+++|+|+|++|++++ ||.|+|||+......                  .....  ....+|...|.+++|+||
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~--~~~~~h~~~I~~v~~s~d  108 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQ--LDCLNRDNYIRSCKLLPD  108 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEE--EECSCTTSBEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEE--eeecCCCCcEEEEEEcCC
Confidence            889999999999999999987 889999998542110                  00111  111238899999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCC--ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE
Q 001224          836 DSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  912 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  912 (1120)
                      +++|++++ ||.|++||+...  +....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|+
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEeeccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999998 999999998743  45667788999999999999 899999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCcee
Q 001224          913 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  991 (1120)
Q Consensus       913 ~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~  991 (1120)
                      +++|++++..+++++.|+.|++||+.+++..     .... +.   ..|.+++|+|++.++++ +.|+.+++||+.+++.
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~-----~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~  258 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQL-----QQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEE-----EEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             cccccccccccccccccccccccccccceee-----cccc-cc---cceEEEEEcccccccceecccccccccccccccc
Confidence            9999999999999999999999999886532     2222 11   47899999999999998 4889999999999887


Q ss_pred             eeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          992 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       992 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                      ...   ..|...|++++|+|+|++|++|+.||.|++||+.+++.+..+.        | ...|.  +++|+| |+++|++
T Consensus       259 ~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~-~~~v~--~~~~s~-d~~~l~t  323 (337)
T d1gxra_         259 YQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------E-SSSVL--SCDISV-DDKYIVT  323 (337)
T ss_dssp             EEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--------C-SSCEE--EEEECT-TSCEEEE
T ss_pred             ccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc--------C-CCCEE--EEEEeC-CCCEEEE
Confidence            643   3789999999999999999999999999999999999987654        2 22255  899999 6899999


Q ss_pred             EeCCCcEEEEec
Q 001224         1072 GLSDGGVHVFEP 1083 (1120)
Q Consensus      1072 ~~~Dg~v~vW~~ 1083 (1120)
                      |+.||+|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-34  Score=318.67  Aligned_cols=342  Identities=18%  Similarity=0.289  Sum_probs=251.3

Q ss_pred             cccCCCCce-EEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          421 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       421 ~l~~h~~~V-~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      +|.||...| +|++  +||++||+|+.||+|+|||+.+++.+.   ++.+|.+.|++++|+|++   +|++|+.|++|++
T Consensus         7 tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence            588999886 5555  568999999999999999999998665   788999999999999864   5999999999999


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccc
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  579 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~  579 (1120)
                      |++...++......+............+++.++++++.|+.|++||+.................................
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            99999998887766655555554445677789999999999999999876554433222211111111111111122222


Q ss_pred             ccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224          580 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  659 (1120)
Q Consensus       580 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  659 (1120)
                      ........+.++++.++++..|+.|++||+.+++.+.....+.  ..+.++.|+|++.++++++.|+.|++|+..++ ..
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~  235 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-EL  235 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTC-CE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccc--cccccccccccceeeecccccceEEeeecccc-cc
Confidence            2233345566778899999999999999999999888877554  36888999999999999999999999997655 11


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                      ...+                                                                            
T Consensus       236 ~~~~----------------------------------------------------------------------------  239 (355)
T d1nexb2         236 MYTL----------------------------------------------------------------------------  239 (355)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (355)
T d1nexb2         240 --------------------------------------------------------------------------------  239 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEE-EecCCCcEEEEEeCCCcEEEEEeec
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA-FHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~-~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                       .+|...|.+++++  +++|++++ ||.|++||+.++...  +..|...+.+++ +++ ++++|++|+ ||.|+|||+++
T Consensus       240 -~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~t  312 (355)
T d1nexb2         240 -QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS  312 (355)
T ss_dssp             -CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred             -ccccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcC-CCCEEEEEe-CCEEEEEECCC
Confidence             0156667777775  45788887 888999988876543  334555566554 555 777777665 89999999999


Q ss_pred             ceeeE-eecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          898 DEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       898 ~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ++++. .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus       313 g~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         313 GKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99875 57889999999999986 57888999999877754

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-33  Score=307.95  Aligned_cols=254  Identities=16%  Similarity=0.191  Sum_probs=211.5

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +.+.+.+++++|+|+. ++.++ ++.|.+||+.+++...                   ++.+|...|++++|+|+|++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence            4567788999999996 56554 5789999999887665                   4788999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC--CCcEEEEECCCCceeEEeeccccCeEE
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS  520 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~h~~~v~~  520 (1120)
                      +|+.||+|+|||+.++.... ...+.+|.+.|.+++|+|+++  ++++++.  ++.++||++++++.+..+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeecccccc-ccccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            99999999999999887542 235788999999999999999  5777764  567999999999999999999999999


Q ss_pred             EeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeC
Q 001224          521 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  600 (1120)
Q Consensus       521 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  600 (1120)
                      ++|+++.+ ..+++|+.||.|++||+++.+....+..|...|.++.++|++                     +++++++.
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~---------------------~~l~~~~~  209 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFASTGG  209 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEEET
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccccCccc---------------------cccccccc
Confidence            99976543 368899999999999999877666666666666666555555                     58999999


Q ss_pred             CCeEEEEECCCCceeEEEecC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          601 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       601 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                      |+.|++||..++..+..+...     +|...|.+++|+|++++|++|+.||.|++||+.++ ++++.+
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l  276 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTI  276 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence            999999999999888777532     23457999999999999999999999999999887 444444

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-33  Score=307.20  Aligned_cols=284  Identities=13%  Similarity=0.132  Sum_probs=232.1

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      +.+....++++|+|+.++.++ ++.+.+|++..                      +..... +.  +|...|++++|+|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~--~H~~~v~~~~~sp~   69 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YT--EHSHQTTVAKTSPS   69 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-EC--CCSSCEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-Ec--CCCCCEEEEEEeCC
Confidence            344566789999999888775 55688887632                      222211 22  38999999999999


Q ss_pred             CCEEEEEe-CCcEEEEEcCCCcee--eeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeEeecccccc
Q 001224          836 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSKR  910 (1120)
Q Consensus       836 ~~~l~~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~~  910 (1120)
                      |++|++|+ ||+|++||+.+....  ..+..|...|.+++|+| ++++|++++.  +..++||++.+++....+.+|...
T Consensus        70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999999 999999999887644  55788999999999999 8889988875  456999999999999999999999


Q ss_pred             eEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001224          911 ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK  988 (1120)
Q Consensus       911 V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~  988 (1120)
                      |++++|+|++++ |++|+.|+.|++||+++++     ......+|.   ..|.+++|+|++++++++ .|+.|++||..+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccceeeecccccccccccccccccc-----ccccccccc---ccccccccCcccccccccccccccccccccc
Confidence            999999999885 8899999999999999854     344445554   379999999999999985 799999999999


Q ss_pred             ceeeecccc-----CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecC
Q 001224          989 LECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1063 (1120)
Q Consensus       989 ~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p 1063 (1120)
                      +.....+..     .+|.+.|++++|+|++++|++|+.||.|+|||+.+++++..+....       ......+++.|+ 
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-------~~~~~~~~~~~~-  292 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-------RIEDQQLGIIWT-  292 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------SGGGCEEEEEEC-
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-------CccceEEEEEec-
Confidence            887766542     3588999999999999999999999999999999999998876211       111233355554 


Q ss_pred             CCCCEEEEEeCCCcEEEEecC
Q 001224         1064 QEPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1064 ~d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                        ++.|++++.||.|++||++
T Consensus       293 --~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 --KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             --SSCEEEEETTCCEEEEETT
T ss_pred             --CCEEEEEECCCEEEEEeCC
Confidence              5689999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=317.99  Aligned_cols=329  Identities=16%  Similarity=0.262  Sum_probs=246.6

Q ss_pred             EEEECCCeEEEEEccCCceee-eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee--------
Q 001224          442 GVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--------  512 (1120)
Q Consensus       442 as~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--------  512 (1120)
                      ..+..++.+.+|+....+.+. ......+|.+.|++|+|+|||+  +|++|+ |++|+|||+.+++.+..+.        
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence            356677888999977655432 1223346999999999999999  788887 8999999999998887664        


Q ss_pred             ----------ccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          513 ----------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       513 ----------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                                +|...|.+++|++  ++++|++|+.||.|++||....+.......|...|.++.+++++           
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~--~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------  175 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-----------  175 (388)
T ss_dssp             ----------CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----------
T ss_pred             ccccccccccCCCCCEEEEEECC--CCCcceeccccccccccccccccccccccccccccccccccccc-----------
Confidence                      4566799999865  56899999999999999999877777777776666666666655           


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCcchhhh
Q 001224          583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLR  661 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  661 (1120)
                                ..+++++.++.+++||..+.........+..   ..++.+.+ ++.+|++++.||.|++|+..++. ...
T Consensus       176 ----------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~  241 (388)
T d1erja_         176 ----------DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVE  241 (388)
T ss_dssp             ----------SEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             ----------ccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeecccCc-cce
Confidence                      4789999999999999999888777765433   44555555 89999999999999999987762 111


Q ss_pred             hcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCC
Q 001224          662 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  741 (1120)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~  741 (1120)
                      .+....                                                                          
T Consensus       242 ~~~~~~--------------------------------------------------------------------------  247 (388)
T d1erja_         242 RLDSEN--------------------------------------------------------------------------  247 (388)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eecccc--------------------------------------------------------------------------
Confidence            110000                                                                          


Q ss_pred             CCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCC
Q 001224          742 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  821 (1120)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~  821 (1120)
                               ....+|...|.+++|+|+++.+++++.||.+++|++...                      ....      
T Consensus       248 ---------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~------  290 (388)
T d1erja_         248 ---------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA----------------------NNKS------  290 (388)
T ss_dssp             ------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------------------------
T ss_pred             ---------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC----------------------cccc------
Confidence                     000225667777777777777777777777777765211                      0000      


Q ss_pred             CCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001224          822 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       822 ~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  901 (1120)
                             ...                   ....+........|...|++++|+| ++++|++|+.||.|++||+.+++++
T Consensus       291 -------~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         291 -------DSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             ----------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             -------ccc-------------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEE
Confidence                   000                   0011233445556888999999999 8999999999999999999999999


Q ss_pred             EeecccccceEEEEE------ccCCCEEEEEeCCCCEEEEECC
Q 001224          902 SKLKGHSKRITGLAF------SHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~------s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      ..+.+|.+.|+++++      +|++.+||||+.||+|+||+++
T Consensus       344 ~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999975      5789999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-33  Score=311.29  Aligned_cols=345  Identities=17%  Similarity=0.209  Sum_probs=253.1

Q ss_pred             eeecccccCe-EEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEE
Q 001224          465 LEIDAHVGGV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  543 (1120)
Q Consensus       465 ~~l~~h~~~V-~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  543 (1120)
                      .+|+||.+.| +|++|  +++  +|+||+.||+|+|||+.+++++.++.+|.+.|.+++|+++   .+|++|+.|++|++
T Consensus         6 ~tL~GH~~~vitc~~~--~~~--~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~---~~l~s~s~D~~i~i   78 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT---TEEEEEETTCCEEE
T ss_pred             EEECCcCCCcEEEEEE--CCC--EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC---CEEEEEeccccccc
Confidence            4689998876 66665  567  7999999999999999999999999999999999998642   47888888888888


Q ss_pred             EecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCC
Q 001224          544 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  623 (1120)
Q Consensus       544 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  623 (1120)
                      |+.....                                                               ..........
T Consensus        79 w~~~~~~---------------------------------------------------------------~~~~~~~~~~   95 (355)
T d1nexb2          79 WDIKKGC---------------------------------------------------------------CTHVFEGHNS   95 (355)
T ss_dssp             EETTTTE---------------------------------------------------------------EEEEECCCSS
T ss_pred             ccccccc---------------------------------------------------------------cccccccccc
Confidence            8765422                                                               1111111111


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001224          624 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  703 (1120)
Q Consensus       624 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1120)
                      ........+++++.++++++.|+.|++|++.+... .........                                   
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~~~-----------------------------------  139 (355)
T d1nexb2          96 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEHD-----------------------------------  139 (355)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------C-----------------------------------
T ss_pred             cccccccccccccceeeeecCCCcEEEEEccCCce-eccccccce-----------------------------------
Confidence            11234466778899999999999999999876621 111100000                                   


Q ss_pred             ccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEE
Q 001224          704 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  783 (1120)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v  783 (1120)
                                                  ..                            .....+...       ...+..
T Consensus       140 ----------------------------~~----------------------------~~~~~~~~~-------~~~~~~  156 (355)
T d1nexb2         140 ----------------------------YP----------------------------LVFHTPEEN-------PYFVGV  156 (355)
T ss_dssp             ----------------------------CC----------------------------EEESCTTTC-------TTEEEE
T ss_pred             ----------------------------ec----------------------------cceeccccc-------cceeee
Confidence                                        00                            000000000       000000


Q ss_pred             eeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeec
Q 001224          784 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       784 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~  862 (1120)
                      ..                                    .|...+  ..+.+++++++++. |+.|++||+.+++.+....
T Consensus       157 ~~------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~  198 (355)
T d1nexb2         157 LR------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS  198 (355)
T ss_dssp             EE------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ee------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeeee
Confidence            00                                    023333  34556788999988 8999999999999999999


Q ss_pred             CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCccc
Q 001224          863 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  942 (1120)
Q Consensus       863 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~  942 (1120)
                      ++...+.++.|+| ++.++++++.||.|++||+.++..+..+.+|...|++++|+  +++|++++.||+|++||+.+...
T Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~  275 (355)
T d1nexb2         199 GHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR  275 (355)
T ss_dssp             CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccce
Confidence            9999999999999 89999999999999999999999999999999999999996  57999999999999999987543


Q ss_pred             ccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC
Q 001224          943 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1022 (1120)
Q Consensus       943 ~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1022 (1120)
                          .+..   |..  ......++++++.+++++.|+.|++||+++++++.... .+|..+|.+++|+|+ .++++++.|
T Consensus       276 ----~~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         276 ----KFSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             ----EEEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             ----eccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECC
Confidence                2222   211  12233467889999999999999999999999886533 378999999999987 578889999


Q ss_pred             CcEEEEEc
Q 001224         1023 ATVCVFSA 1030 (1120)
Q Consensus      1023 g~v~iwd~ 1030 (1120)
                      |.++||.+
T Consensus       345 g~~~l~~~  352 (355)
T d1nexb2         345 GQSFLEIL  352 (355)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-32  Score=299.26  Aligned_cols=286  Identities=14%  Similarity=0.186  Sum_probs=236.7

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      +|.||.++|++++|+|++++||+|+.||+|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~  124 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence            488999999999999999999999999999999999998665   6788999999999999999  79999999999999


Q ss_pred             ECCCC----ceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          501 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       501 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      +....    .....+.+|............   ..+.....|.....|.................               
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  186 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGD---------------  186 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSC---------------
T ss_pred             cccccccccccceecccccccccccccccc---ccccccccccccccccccccccccccccccee---------------
Confidence            97754    345667788877766554322   46888888999998887765444444433333               


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                            +....+.+.+..+++++.|+.|++||+.+++.+..+..|.  ..|.+++|+|++++|++|+.||.|++|++...
T Consensus       187 ------~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~--~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         187 ------VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ------EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ------EeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence                  3444555555689999999999999999999999988664  47999999999999999999999999997654


Q ss_pred             chhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeee
Q 001224          657 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  736 (1120)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~  736 (1120)
                      .. ...                                                                          
T Consensus       259 ~~-~~~--------------------------------------------------------------------------  263 (340)
T d1tbga_         259 QE-LMT--------------------------------------------------------------------------  263 (340)
T ss_dssp             EE-EEE--------------------------------------------------------------------------
T ss_pred             cc-ccc--------------------------------------------------------------------------
Confidence            10 000                                                                          


Q ss_pred             cccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccc
Q 001224          737 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  816 (1120)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~  816 (1120)
                                                                     +.                               
T Consensus       264 -----------------------------------------------~~-------------------------------  265 (340)
T d1tbga_         264 -----------------------------------------------YS-------------------------------  265 (340)
T ss_dssp             -----------------------------------------------EC-------------------------------
T ss_pred             -----------------------------------------------cc-------------------------------
Confidence                                                           00                               


Q ss_pred             cCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001224          817 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  894 (1120)
Q Consensus       817 ~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  894 (1120)
                       .  ..+...+.+++|+|++++|++|+ ||.|++||+.+++.+.++.+|...|++++|+| ++++||+|+.||.|+|||
T Consensus       266 -~--~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 -H--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -C--TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             -c--ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence             0  01456688899999999999998 89999999999999999999999999999999 899999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=308.39  Aligned_cols=263  Identities=12%  Similarity=0.074  Sum_probs=205.8

Q ss_pred             CCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEE
Q 001224          364 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  443 (1120)
Q Consensus       364 ~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  443 (1120)
                      .++|+|++|||||+ +||+|+.||.|+|||+.+++.....                 .+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            37899999999999 5999999999999999887643321                 37799999999999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee----EEeeccccCeE
Q 001224          444 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  519 (1120)
Q Consensus       444 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~  519 (1120)
                      |+.|++|+|||+.++... ....+.+|...|.+++|+|+++  .+++|+.|++|++|++......    ....+|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999987643 3445778999999999999999  7999999999999998876543    34457889999


Q ss_pred             EEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEec-ccccceeEEEEcCCCCEEEEE
Q 001224          520 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA  598 (1120)
Q Consensus       520 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~~~i~~~~~~~~~~~l~~~  598 (1120)
                      +++|++  ++.+|++|+.|++|++|+...............    ....+.+...... .+...+..++|+|++++|+++
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW----GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT----BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCccccccccccc----cccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence            999865  568999999999999999876433221111000    0001112122221 223467788889998999999


Q ss_pred             eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          599 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       599 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +.|+.|++||+.+++.+..+..+..  .|.+++|+|++++|++| .|+.+++|.....
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             ccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            9999999999999999999886644  79999999999887765 4777777766543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-32  Score=304.84  Aligned_cols=307  Identities=15%  Similarity=0.193  Sum_probs=227.7

Q ss_pred             CCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCC
Q 001224          426 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  505 (1120)
Q Consensus       426 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~  505 (1120)
                      .++|+|++|||||++||+|+.||.|+|||+++++. .....+.+|.+.|.+++|+|+++  +|++|+.|++|+|||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence            46899999999999999999999999999998763 34557899999999999999999  7999999999999999877


Q ss_pred             cee--EEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          506 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       506 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      ...  ..+.+|...|.+++|++  +++.|++++.|++|++|++.......                              
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~------------------------------  131 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWW------------------------------  131 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEE------------------------------
T ss_pred             cccccccccccccccccccccc--ccccceeecccCcceeeeeecccccc------------------------------
Confidence            644  44567788888888754  44678888888888887665321110                              


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhc
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  663 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  663 (1120)
                                                     ........+...|.+++|+|++++|++|+.|++|++|+..... .....
T Consensus       132 -------------------------------~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~-~~~~~  179 (371)
T d1k8kc_         132 -------------------------------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERP  179 (371)
T ss_dssp             -------------------------------EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCC
T ss_pred             -------------------------------cccccccccccccccccccccccceeccccCcEEEEEeeccCc-ccccc
Confidence                                           0001111223468899999999999999999999999976541 10000


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCC
Q 001224          664 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~  743 (1120)
                      .                                                                   ...|+..     
T Consensus       180 ~-------------------------------------------------------------------~~~~~~~-----  187 (371)
T d1k8kc_         180 A-------------------------------------------------------------------PTPWGSK-----  187 (371)
T ss_dssp             C-------------------------------------------------------------------CBTTBSC-----
T ss_pred             c-------------------------------------------------------------------ccccccc-----
Confidence            0                                                                   0000000     


Q ss_pred             ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224          744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  823 (1120)
Q Consensus       744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~  823 (1120)
                                            .+.+..+.                                             ....|
T Consensus       188 ----------------------~~~~~~~~---------------------------------------------~~~~~  200 (371)
T d1k8kc_         188 ----------------------MPFGELMF---------------------------------------------ESSSS  200 (371)
T ss_dssp             ----------------------CCTTCEEE---------------------------------------------ECCCC
T ss_pred             ----------------------ccceeeee---------------------------------------------eccCc
Confidence                                  00010000                                             00127


Q ss_pred             CCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc--ee
Q 001224          824 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EV  900 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~  900 (1120)
                      ...|.+++|+|++++|++++ |+.|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|.....  ..
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceE
Confidence            78899999999999999998 89999999999999999999999999999999 888888665 777777765432  11


Q ss_pred             eE---------------------------------------eecccccceEEEEEccCC----CEEEEEeCCCCEEEEEC
Q 001224          901 KS---------------------------------------KLKGHSKRITGLAFSHAL----NVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       901 ~~---------------------------------------~l~~h~~~V~~l~~s~d~----~~l~s~s~Dg~v~iWd~  937 (1120)
                      ..                                       ....|.+.|+++++.+.+    ..++|+|.||.|+|||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence            00                                       001388899999998754    36899999999999999


Q ss_pred             CCc
Q 001224          938 DGW  940 (1120)
Q Consensus       938 ~~~  940 (1120)
                      ++.
T Consensus       359 ~~~  361 (371)
T d1k8kc_         359 RSL  361 (371)
T ss_dssp             HHH
T ss_pred             CcC
Confidence            763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-31  Score=296.46  Aligned_cols=317  Identities=19%  Similarity=0.292  Sum_probs=247.8

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      ++.||.+.|.+ +++++|++||||+.||+|+|||+.+++.+.   ++.+|.+.|.+++|+++    +|++|+.|+.+++|
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence            58899999865 477789999999999999999999998765   78899999999999874    69999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      +............+...+......  .  ..+..+..|+.+.+|+..+......+........                 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-----------------  141 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-----------------  141 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-----------------
T ss_pred             ccccccceecccccceeEeeeecc--c--ccccccccceeEEEeecccccceeeeecccccce-----------------
Confidence            999888887777777777665532  2  4688899999999999987665544433322111                 


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                            ...+....+++++.|+.|++||......+..+..+.    .....+++++.++++++.||.|++||+..+ +.+
T Consensus       142 ------~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~  210 (342)
T d2ovrb2         142 ------CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCI  210 (342)
T ss_dssp             ------EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             ------eeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eee
Confidence                  122233468899999999999999998888887553    345666778999999999999999997654 110


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                      ..+                                                                             
T Consensus       211 ~~~-----------------------------------------------------------------------------  213 (342)
T d2ovrb2         211 HTL-----------------------------------------------------------------------------  213 (342)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             eEe-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (342)
T d2ovrb2         214 --------------------------------------------------------------------------------  213 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  896 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  896 (1120)
                      ..|...+.+++++  ++++++++ |+.|++||+...+....+..   |...+.++.++   ++++++|+.||.|++||+.
T Consensus       214 ~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             cccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence            0144445555544  45888887 88999999888777766654   44556666665   4699999999999999999


Q ss_pred             cceeeEeec-----ccccceEEEEEccCCCEEEEEeCCCC----EEEEECCC
Q 001224          897 VDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  939 (1120)
Q Consensus       897 ~~~~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~----v~iWd~~~  939 (1120)
                      +++++..+.     +|.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999887763     68889999999999999999999996    99999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-31  Score=295.86  Aligned_cols=292  Identities=20%  Similarity=0.316  Sum_probs=245.2

Q ss_pred             eeeec-cCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          357 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       357 ~~~~~-~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      ..+++ +|.+.|++|+|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~  106 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYA  106 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEEC
T ss_pred             eeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEee
Confidence            44444 5999999999999999 599999999999999999988763                   67799999999999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCcee-eeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecc
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  514 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h  514 (1120)
                      |+++++++|+.|+.+++|+....... .....+.+|...........+.   .++....|.....|+............+
T Consensus       107 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             TTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred             ccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence            99999999999999999998765432 2334577888877777766654   4788888999999999888888888888


Q ss_pred             ccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCE
Q 001224          515 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  594 (1120)
Q Consensus       515 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~  594 (1120)
                      ...+....+.+  .+.++++++.|+.|++||+++......+..|...|.+++|+|++                     ++
T Consensus       184 ~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~---------------------~~  240 (340)
T d1tbga_         184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---------------------NA  240 (340)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SE
T ss_pred             ceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC---------------------CE
Confidence            88888877644  44789999999999999999887777777777766666666655                     48


Q ss_pred             EEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccC
Q 001224          595 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  674 (1120)
Q Consensus       595 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  674 (1120)
                      |++++.||.|++||+.....+..+....+...+.+++|+|++++|++|+.||.|++||+.++ +.+..+           
T Consensus       241 l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~-----------  308 (340)
T d1tbga_         241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL-----------  308 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEE-----------
T ss_pred             EEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEE-----------
Confidence            99999999999999999998888876666677999999999999999999999999998766 222221           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCc
Q 001224          675 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  754 (1120)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  754 (1120)
                                                                                                     .
T Consensus       309 -------------------------------------------------------------------------------~  309 (340)
T d1tbga_         309 -------------------------------------------------------------------------------A  309 (340)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           2


Q ss_pred             cccccEEEEEEcCCCceEEEeccCceEEEee
Q 001224          755 LRATKISRLIFTNSGNAILALASNAIHLLWK  785 (1120)
Q Consensus       755 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~  785 (1120)
                      +|...|.+++|+|++.+|++++.||.|++||
T Consensus       310 ~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            3778899999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.2e-31  Score=287.89  Aligned_cols=294  Identities=15%  Similarity=0.146  Sum_probs=225.6

Q ss_pred             CceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhh
Q 001224          612 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA  691 (1120)
Q Consensus       612 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1120)
                      |+..+.+.+|.  ..|++++|+|++++|++|+.||+|++||+.++ +..+.+.                           
T Consensus         2 g~~~~~~~GH~--~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~---------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP---------------------------   51 (299)
T ss_dssp             TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred             CccceEcCCCC--CCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence            45667777664  48999999999999999999999999998776 2211110                           


Q ss_pred             hhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCce
Q 001224          692 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  771 (1120)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  771 (1120)
                                                                                    ..|...|.+++|+|++. 
T Consensus        52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~-   68 (299)
T d1nr0a2          52 --------------------------------------------------------------DVHATMITGIKTTSKGD-   68 (299)
T ss_dssp             --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred             --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence                                                                          23678899999999997 


Q ss_pred             EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEE
Q 001224          772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  851 (1120)
Q Consensus       772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd  851 (1120)
                      +++++.|+.+++|+........                 ....     ...+...+.++++++++++++++.++.+++|+
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~-----------------~~~~-----~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~  126 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDS-----------------SKAV-----ANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  126 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCT-----------------TSCC-----EEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eecccceeeEEEeccCCccccc-----------------cccc-----cccccccccccccccccccccccccccccccc
Confidence            6677788999999864321100                 0000     01256778899999999999999899999999


Q ss_pred             cCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE-eecccccceEEEEEccCCCEEEEEeCCC
Q 001224          852 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS  930 (1120)
Q Consensus       852 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  930 (1120)
                      ...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus       127 ~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         127 HGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             TTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            543  22222  344688999999 89999999999999999999877544 3457899999999999999999999999


Q ss_pred             CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceeeeccccCCC-CCCeeEEE
Q 001224          931 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES-SAPITHAT 1008 (1120)
Q Consensus       931 ~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d~~v~i~d~~~~~~~~~~~~~~h-~~~v~~l~ 1008 (1120)
                      .|++||+.++....  ......+|.   ..|++++|+|++.+|+++ .|+.|++||+.++..........| ...|.++.
T Consensus       202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence            99999998754321  223334444   479999999999999995 889999999998765544443344 45566665


Q ss_pred             ECCCCcEEEEEEcCCcEEEEEcC
Q 001224         1009 FSCDSQLVYACFLDATVCVFSAA 1031 (1120)
Q Consensus      1009 ~s~dg~~l~s~~~Dg~v~iwd~~ 1031 (1120)
                       ++++++|++|+.||+|++||+.
T Consensus       277 -~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         277 -WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EEETTEEEEEETTSCEEEEECC
T ss_pred             -ECCCCEEEEEeCCCEEEEEecc
Confidence             5677899999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-30  Score=289.91  Aligned_cols=325  Identities=19%  Similarity=0.261  Sum_probs=245.9

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      ....|+||.+.|.+ +++++|+  +|+||+.||+|+|||+.+++++.++.+|.+.|.+++|++    .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            44478999999865 4666788  799999999999999999999999999999999999854    3899999999999


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  622 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  622 (1120)
                      +|+................+.....                       ....+..+..|+.+.+|+..+++....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  137 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHL-----------------------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV  137 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             ccccccccceecccccceeEeeeec-----------------------ccccccccccceeEEEeecccccceeeeeccc
Confidence            9998765544433333332222221                       22457888999999999999988877776432


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001224          623 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  702 (1120)
Q Consensus       623 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1120)
                          .....+.+....+++++.|+.|++||.... .....+.                                      
T Consensus       138 ----~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~--------------------------------------  174 (342)
T d2ovrb2         138 ----AAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQ--------------------------------------  174 (342)
T ss_dssp             ----SCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEEC--------------------------------------
T ss_pred             ----ccceeeccccceeeeecCCCeEEEeecccc-eeeEEEc--------------------------------------
Confidence                233455566777888888888888886443 0000000                                      


Q ss_pred             cccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEE
Q 001224          703 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  782 (1120)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  782 (1120)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (342)
T d2ovrb2         175 --------------------------------------------------------------------------------  174 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeee
Q 001224          783 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF  861 (1120)
Q Consensus       783 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~  861 (1120)
                                                             +|..  ....+++++.++++++ ||.|++||+..++.+..+
T Consensus       175 ---------------------------------------~~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~  213 (342)
T d2ovrb2         175 ---------------------------------------GHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL  213 (342)
T ss_dssp             ---------------------------------------CCSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ---------------------------------------Cccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEe
Confidence                                                   0222  2334455788899988 999999999999999999


Q ss_pred             cCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc---cccceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          862 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       862 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      .+|...+.++++++   ++|++|+.||.|++||+...+....+.+   |...+.++.+  +++++++|+.||+|++||++
T Consensus       214 ~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         214 TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             cccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            99999999988865   5999999999999999998877777654   5566666666  46799999999999999998


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEE
Q 001224          939 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1018 (1120)
Q Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1018 (1120)
                      +++....     .                                         ......+|...|++++|+|++.+|++
T Consensus       289 tg~~i~~-----~-----------------------------------------~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         289 TGEFIRN-----L-----------------------------------------VTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEE-----E-----------------------------------------EECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCCEEEE-----E-----------------------------------------ecccCCCCCCCEEEEEECCCCCEEEE
Confidence            8542110     0                                         00112257888999999999999999


Q ss_pred             EEcCCc----EEEEEcCC
Q 001224         1019 CFLDAT----VCVFSAAN 1032 (1120)
Q Consensus      1019 ~~~Dg~----v~iwd~~~ 1032 (1120)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999986    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-30  Score=282.22  Aligned_cols=281  Identities=16%  Similarity=0.229  Sum_probs=206.0

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCeEEEeeccCCCceEEEEEecCCeEEEE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  544 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  544 (1120)
                      .+.||.+.|++++|+||++  +|+||+.||+|++||+.+++++..+. +|...|.+++|+++  +. +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEEEe
Confidence            6899999999999999999  79999999999999999999998884 68999999999654  33 6677789999999


Q ss_pred             ecCCCCCc---eeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 001224          545 LYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  621 (1120)
Q Consensus       545 d~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  621 (1120)
                      +.......   .....+...+..+++++                     ++..++ ++.++.+++|+...  ...... .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------------~g~~~~-~~~~~~i~~~~~~~--~~~~~~-~  136 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSA---------------------DGDIAV-AACYKHIAIYSHGK--LTEVPI-S  136 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECT---------------------TSSCEE-EEESSEEEEEETTE--EEEEEC-S
T ss_pred             ccCCcccccccccccccccccccccccc---------------------cccccc-cccccccccccccc--cccccc-c
Confidence            98653321   11122233344444444                     444444 44567889998542  222222 1


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                         ..+.+++|+|+++++++|+.||.|++||+.++. ...                                        
T Consensus       137 ---~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-~~~----------------------------------------  172 (299)
T d1nr0a2         137 ---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSE----------------------------------------  172 (299)
T ss_dssp             ---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEE----------------------------------------
T ss_pred             ---ccccccccccccccccccccccccccccccccc-ccc----------------------------------------
Confidence               246788999999999999999999999875441 000                                        


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                                                +                     
T Consensus       173 ----------------------------------------------------------~---------------------  173 (299)
T d1nr0a2         173 ----------------------------------------------------------V---------------------  173 (299)
T ss_dssp             ----------------------------------------------------------E---------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCcee--
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--  858 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~--  858 (1120)
                      .                                   .  ..|...|.+++|+|+++++++++ |+.|++||+.++...  
T Consensus       174 ~-----------------------------------~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         174 K-----------------------------------T--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             E-----------------------------------E--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             c-----------------------------------c--ccccccccccccccccccccccccccccccccccccccccc
Confidence            0                                   0  00566677788888888888877 788888888765543  


Q ss_pred             -eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceee--Eeeccc-ccceEEEEEccCCCEEEEEeCCCCEEE
Q 001224          859 -ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-SKRITGLAFSHALNVLVSSGADSQLCV  934 (1120)
Q Consensus       859 -~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~i  934 (1120)
                       ..+..|...|++++|+| ++++|++|+.||.|++||+.+++..  .....| ...|.++.| +++++|++++.|++|++
T Consensus       217 ~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence             34567889999999999 8999999999999999999876433  233334 455666655 56789999999999999


Q ss_pred             EECC
Q 001224          935 WSSD  938 (1120)
Q Consensus       935 Wd~~  938 (1120)
                      ||+.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.8e-29  Score=272.36  Aligned_cols=256  Identities=15%  Similarity=0.208  Sum_probs=192.2

Q ss_pred             CCceEEEEecCCCeEEEEEeCC-CcEEEEecCCCceeEeeceeeeccCCCCcccccccccCC-CCceEEEEEcC--CCCe
Q 001224          365 SSPMSMDFHPVQQTLLLVGTNV-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGSL  440 (1120)
Q Consensus       365 ~~v~~v~~spdg~~lla~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~  440 (1120)
                      ..+++++|+|+|+. ++.++.+ ..|+.||....+....                 ..+.+| ...|++++|+|  +|++
T Consensus        18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence            45789999999996 5655543 3456666543322110                 024566 57899999998  6789


Q ss_pred             EEEEECCCeEEEEEccCCceeee-----eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccc
Q 001224          441 FGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  515 (1120)
Q Consensus       441 las~~~dg~v~iwd~~~~~~~~~-----~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~  515 (1120)
                      ||+|+.||+|+|||+..++....     ...+..|.++|.+++|+++++.+..++++.++.+++|++.+++++..+.+|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            99999999999999986653321     1235678899999999999995333444568899999999999999999999


Q ss_pred             cCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee---CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCC
Q 001224          516 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  592 (1120)
Q Consensus       516 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~  592 (1120)
                      ..|.+++|++..+ ..+++++.|+.+++||....+......   .+...|.+++|+|++                    +
T Consensus       160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~--------------------~  218 (325)
T d1pgua1         160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS--------------------G  218 (325)
T ss_dssp             SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------C
T ss_pred             ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc--------------------c
Confidence            9999999976543 467889999999999987654433322   233445555555543                    3


Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEc---CCCCEEEEEECCCcEEEEEccCcchhhhh
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLRT  662 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  662 (1120)
                      .++++++.||.|++||+++++.+..+..|..  .+.++.|+   |+|++|++++.|+.|++||+.++ +.++.
T Consensus       219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~  288 (325)
T d1pgua1         219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQK  288 (325)
T ss_dssp             CEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred             eeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence            6789999999999999999999999886644  45556665   78999999999999999999877 44433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-29  Score=275.48  Aligned_cols=287  Identities=14%  Similarity=0.149  Sum_probs=217.2

Q ss_pred             ccEEEEEEcCCCceEEEeccCc-eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC-CCCccEEEEcc-
Q 001224          758 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-EEAVPCFALSK-  834 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~-~~~v~~l~~s~-  834 (1120)
                      ..+.+++|+|++..++.++.+. .++.|+.....                    ..... .+.  +| ...|++++|+| 
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~~-~~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPVV-QFT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSEE-EEC--TTTTSCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccceE-EEe--CCCCCCEEEEEEeeC
Confidence            4557889999999988876553 34555431110                    00010 111  24 56799999997 


Q ss_pred             -CCCEEEEEe-CCcEEEEEcCCCcee--------eeecCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeE
Q 001224          835 -NDSYVMSAS-GGKISLFNMMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       835 -d~~~l~~~s-dg~i~vwd~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~  902 (1120)
                       ++++|++|+ ||+|++||+..++..        ..+..|.++|.+++|++ ++++|++++.  ++.+++|+..+++++.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 999999998754433        23456888999999999 8888877654  6789999999999999


Q ss_pred             eecccccceEEEEEccCCCE-EEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC-CcEEEE-EeCC
Q 001224          903 KLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHET  979 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd-g~~la~-~~d~  979 (1120)
                      .+.+|...|++++|+|++.+ +++++.|+.+++||+...+..  .......++.   ..|.+++|+|+ +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS--ASDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE--EEECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccc--eecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999875 678999999999999875432  2222233333   47899999997 678887 5899


Q ss_pred             eEEEEEcCCceeeeccccCCCCCCeeEEEEC---CCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          980 QLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                      .|++||+.+++++..+.  +|..++.++.|+   |||++|++++.|+.|+|||+.+++++..+.....      ...+..
T Consensus       229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~  300 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQ  300 (325)
T ss_dssp             CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCE
T ss_pred             ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCeE
Confidence            99999999999988876  667777666665   7899999999999999999999999987762111      111333


Q ss_pred             eEEEecCCCCCEEEEEeCCCcEEEEec
Q 001224         1057 LVIAAHPQEPNEFALGLSDGGVHVFEP 1083 (1120)
Q Consensus      1057 ~~i~~~p~d~~~l~s~~~Dg~v~vW~~ 1083 (1120)
                      +++.+.+  ..+|++++.||.|+|||+
T Consensus       301 ~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEEECC--CCEEEEEECCCEEEEEEC
Confidence            3455544  468999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-27  Score=256.33  Aligned_cols=269  Identities=18%  Similarity=0.263  Sum_probs=207.8

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      ...+|.||.++|++++|+|      |+||+.||+|++||+.++     ..+|...|.++++.+.   ..+++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC---CeEEEEeeccccc
Confidence            3447999999999999975      799999999999998764     3579999999997532   4689999999999


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  622 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  622 (1120)
                      +|++....       ....+..+++.+++                     . ++..+.++.+.+|+..+++.+..+....
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDG---------------------F-TAVLTNDDDLLILQSFTGDIIKSVRLNS  121 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSS---------------------E-EEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccccccc-------cccceeeeeeccCC---------------------c-eEEEeecccceeeeccceeeeeeccccc
Confidence            99875421       11223334444443                     3 4455667789999999999888887442


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          623 GLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       623 ~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                           ...++++++..+++++.++ .+++|++.+..... .                                       
T Consensus       122 -----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~-~---------------------------------------  156 (287)
T d1pgua2         122 -----PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-D---------------------------------------  156 (287)
T ss_dssp             -----CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-E---------------------------------------
T ss_pred             -----eeeeeeccCcceeeeccccceeeeeeccccceee-e---------------------------------------
Confidence                 3467788888888888765 68888864330000 0                                       


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (287)
T d1pgua2         157 --------------------------------------------------------------------------------  156 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceee-
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-  859 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~-  859 (1120)
                          +                               .  ..+...+++++|+|++++|++|+ ||.|++||+.+++... 
T Consensus       157 ----~-------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         157 ----L-------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             ----C-------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ----e-------------------------------e--eccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence                0                               0  01556688889999999999988 8999999998877654 


Q ss_pred             eecCCCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEeec-ceeeEeecccccceEEEEEccCCCEEEEEeCC
Q 001224          860 TFMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  929 (1120)
Q Consensus       860 ~~~~~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  929 (1120)
                      .+.+|...|.+++|+|.         ++.+||+|+.|+.|+|||+.+ .+.+..+.+|.+.|++++|+|++ .|++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            46789999999999872         356899999999999999976 56778889999999999999986 68999999


Q ss_pred             CCEEEEEC
Q 001224          930 SQLCVWSS  937 (1120)
Q Consensus       930 g~v~iWd~  937 (1120)
                      ++|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.6e-27  Score=261.01  Aligned_cols=328  Identities=13%  Similarity=0.094  Sum_probs=229.7

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      ++.+|.+.|++|+|||++++||+|+.||+|+|||++++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            57899999999999999999999999999999999877654444445579999999999998765 79999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ++..+........+...+....+.. .+...+++++.|+.+++||++..........+..               .....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~---------------~~~~~  148 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---------------SNNTK  148 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC---------------SSSSS
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccc---------------ccccc
Confidence            9999888877766555544333322 2336899999999999999876443332211100               00011


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEec-CCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCcch
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIR  658 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~  658 (1120)
                      .......+.+.++.+++++.|+.|++||+........... ......+.+..+. .++..+++++.||.+.+|+......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            1233455566667899999999999999987664332211 1112234455554 4788999999999999998765411


Q ss_pred             hhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecc
Q 001224          659 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  738 (1120)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~  738 (1120)
                      .......                                                                     +.  
T Consensus       229 ~~~~~~~---------------------------------------------------------------------~~--  237 (342)
T d1yfqa_         229 DYNSSKR---------------------------------------------------------------------FA--  237 (342)
T ss_dssp             STTCTTC---------------------------------------------------------------------EE--
T ss_pred             eeecccc---------------------------------------------------------------------ce--
Confidence            1000000                                                                     00  


Q ss_pred             cCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccC
Q 001224          739 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  818 (1120)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~  818 (1120)
                                                                ...+..                      .        .
T Consensus       238 ------------------------------------------~~~~~~----------------------~--------~  245 (342)
T d1yfqa_         238 ------------------------------------------FRCHRL----------------------N--------L  245 (342)
T ss_dssp             ------------------------------------------EECCCC----------------------C--------T
T ss_pred             ------------------------------------------eeeeee----------------------c--------c
Confidence                                                      000000                      0        0


Q ss_pred             CCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          819 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       819 ~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ....|...+.+++|+|++++|++|+ ||.|++||+.+++.+..+..+ ..+..++|+| ++++||+|+.|+.+++|... 
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~-  322 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI-  322 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS-
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee-
Confidence            0112677899999999999999999 999999999999998887643 3566788899 88899999999888877532 


Q ss_pred             ceeeEeecccccceEEE
Q 001224          898 DEVKSKLKGHSKRITGL  914 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l  914 (1120)
                         ...+..|...|..+
T Consensus       323 ---~~~~~~~~~~i~~~  336 (342)
T d1yfqa_         323 ---DQTIELNASSIYII  336 (342)
T ss_dssp             ---CTTSCCCCCEEEEE
T ss_pred             ---CCCccCCCCeEEEE
Confidence               23455566666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=261.07  Aligned_cols=185  Identities=16%  Similarity=0.214  Sum_probs=140.2

Q ss_pred             CCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee------ecCCCCCeEEEEEecCCCcEEEEEeCCCc---EEE
Q 001224          823 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT------FMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI  892 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~------~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~v  892 (1120)
                      +...+.+++|+|++ +|++|+ |++|++||+.+++.+..      +.+|...|++++|+| ++++|++|+.|++   |++
T Consensus       183 ~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         183 PSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeee
Confidence            55668899999998 888888 89999999998877654      456889999999999 9999999999874   899


Q ss_pred             EEeecceeeEee-------------cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCC-
Q 001224          893 YNVRVDEVKSKL-------------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA-  958 (1120)
Q Consensus       893 wd~~~~~~~~~l-------------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~-  958 (1120)
                      ||+.+++.+..+             .+|.+.|++|+|+||+++|+|++.|++|+|||+++++     ++..+.+|.... 
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~-----~~~~l~gH~~~v~  335 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-----RITTLNMHCDDIE  335 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCGGGCS
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC-----EEEEECCcCCccc
Confidence            999998877766             3799999999999999999999999999999999965     455556665411 


Q ss_pred             CCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEc
Q 001224          959 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1030 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~ 1030 (1120)
                      .....++|+|++..++++..  ..++.+..+.....              .....+.|++++.|+.|++|.-
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         336 IEEDILAVDEHGDSLAEPGV--FDVKFLKKGWRSGM--------------GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SGGGCCCBCTTSCBCSSCCE--EEEEEECTTTSBST--------------TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCccEEEECCCCCEEEEccc--ceEEECccCceecc--------------ccCCCCEEEEEEcCCeEEEEeC
Confidence            12346889999988765321  22222222211100              0123456889999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.6e-27  Score=264.58  Aligned_cols=347  Identities=10%  Similarity=0.076  Sum_probs=228.1

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCcee---eeeeeecccccCeEEEE------EcCCCCceEEEEe
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIA------FSHPNKQLCVITC  491 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~v~------~s~d~~~~~l~s~  491 (1120)
                      ...+|.+.|.++++++  ++|+||+.|++|+|||..+.+..   ........|...+..+.      .+.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            4789999999999874  69999999999999998765421   11112234444433322      222222 268899


Q ss_pred             cCCCcEEEEECCCCceeEEe----------eccccCeEEEeeccCC---CceEEEEEecCCeEEEEecCCCCCce-eeeC
Q 001224          492 GDDKTIKVWDATNGAKQYIF----------EGHEAPVYSVCPHHKE---NIQFIFSTALDGKIKAWLYDNLGSRV-DYEA  557 (1120)
Q Consensus       492 s~d~~i~vwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~  557 (1120)
                      +.||.|++|++........+          ..+...+..+++.+..   .+.++++++.||++++|++....... ....
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999997654332111          1244567777776543   25789999999999999986543221 1111


Q ss_pred             CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecC----CCCCCcCeEEEc
Q 001224          558 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN  633 (1120)
Q Consensus       558 ~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s  633 (1120)
                      +......+....    .........+.+++++|++ +|++|+.||.|++||+.+++++..+...    +|...|.+++|+
T Consensus       166 ~~~~~~~~~~~~----~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTV----ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEE----CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccce----ecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence            111111111000    0001122346678888886 7999999999999999999988776532    345689999999


Q ss_pred             CCCCEEEEEECCCc---EEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC
Q 001224          634 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM  710 (1120)
Q Consensus       634 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1120)
                      |||++|++|+.|++   |++||+.++ .....+......                                         
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~-----------------------------------------  278 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS-----------------------------------------  278 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccc-eeeeeecccccc-----------------------------------------
Confidence            99999999999875   899998776 222211100000                                         


Q ss_pred             CCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccc
Q 001224          711 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  790 (1120)
Q Consensus       711 ~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~  790 (1120)
                                                                                .                     
T Consensus       279 ----------------------------------------------------------~---------------------  279 (393)
T d1sq9a_         279 ----------------------------------------------------------S---------------------  279 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             cCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeE
Q 001224          791 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  869 (1120)
Q Consensus       791 ~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~  869 (1120)
                                            .....+  .+|...|++++|+||+++|++++ |++|++||+.+++++.++.+|...|.
T Consensus       280 ----------------------~~~~~~--~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         280 ----------------------QASLGE--FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             --------------------------CC--BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ----------------------cceeee--ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence                                  000001  13899999999999999999999 99999999999999999999988775


Q ss_pred             ----EEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEE
Q 001224          870 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  936 (1120)
Q Consensus       870 ----~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  936 (1120)
                          .++|+| ++..+++++   ...++.+..+..        ..    ........|++++.|+.|++|.
T Consensus       336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGWR--------SG----MGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTTS--------BS----TTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCccEEEECC-CCCEEEEcc---cceEEECccCce--------ec----cccCCCCEEEEEEcCCeEEEEe
Confidence                588999 777776443   222222222210        00    0012245689999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.8e-26  Score=243.76  Aligned_cols=276  Identities=21%  Similarity=0.310  Sum_probs=206.4

Q ss_pred             eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          463 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       463 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      ......+|...|+|++|  ||+  +|+||+.||+|+|||+.+++++.++.+|.+.|.+++|    ++++|++|+.|+.|+
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i~   78 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVR   78 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEE
T ss_pred             EEeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeeccccccccc
Confidence            34456678899998775  677  7999999999999999999999999999999999886    346999999999999


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cC
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-AD  621 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~  621 (1120)
                      +|++................                       ....+....++++..++.+.+|+..+........ ..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAV-----------------------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV  135 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCE-----------------------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred             cccccccccccccccccccc-----------------------ccccccccceeecccccceeEeecccccccccccccc
Confidence            99998765544433322211                       2223334568999999999999998766433222 22


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001224          622 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  701 (1120)
Q Consensus       622 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1120)
                      .+...+..+.+  ....+++++.|+.|++||..++ +....+.                                     
T Consensus       136 ~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~-------------------------------------  175 (293)
T d1p22a2         136 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN-------------------------------------  175 (293)
T ss_dssp             CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE-------------------------------------
T ss_pred             cccccccccee--cccccccccCCCceeeecCCCC-cEEEEEc-------------------------------------
Confidence            23334444444  4567788888899999987654 1110000                                     


Q ss_pred             ccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceE
Q 001224          702 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  781 (1120)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  781 (1120)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (293)
T d1p22a2         176 --------------------------------------------------------------------------------  175 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeee
Q 001224          782 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT  860 (1120)
Q Consensus       782 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~  860 (1120)
                                                              ++...+..+.+  ++.++++++ ||.|++||+.+...+..
T Consensus       176 ----------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  213 (293)
T d1p22a2         176 ----------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV  213 (293)
T ss_dssp             ----------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ----------------------------------------ccccccccccC--CCCeEEEecCCCEEEEEecccceeeee
Confidence                                                    02233333433  456788877 89999999999999999


Q ss_pred             ecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc---------eeeEeecccccceEEEEEccCCCEEEEEeCCCC
Q 001224          861 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ  931 (1120)
Q Consensus       861 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~  931 (1120)
                      +.++...+.++  ++ ++.+|++|+.||.|++||+.+.         ..+..+.+|.+.|++++|  |+.+|+|++.||+
T Consensus       214 ~~~~~~~v~~~--~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~  288 (293)
T d1p22a2         214 LEGHEELVRCI--RF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  288 (293)
T ss_dssp             ECCCSSCEEEE--EC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             ecccceeeeec--cc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence            98888877654  45 6789999999999999998653         356788999999999999  5678999999999


Q ss_pred             EEEEE
Q 001224          932 LCVWS  936 (1120)
Q Consensus       932 v~iWd  936 (1120)
                      |+|||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.8e-26  Score=249.17  Aligned_cols=276  Identities=10%  Similarity=0.066  Sum_probs=205.3

Q ss_pred             cccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          421 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       421 ~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      ++.||..+|++++|+|    |++|+.||+|++||+.++        ..+|...|.+++|++++.   +++++.|++|++|
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w   72 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN   72 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence            5899999999999998    999999999999998763        357999999999998765   7999999999999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ++...+       ....+..+++.  +++..++ .+.++.+.+|+.........+....                     
T Consensus        73 ~~~~~~-------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  121 (287)
T d1pgua2          73 GITKHE-------FGSQPKVASAN--NDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNS---------------------  121 (287)
T ss_dssp             TEEEEE-------CSSCEEEEEEC--SSSEEEE-EETTSEEEEEETTTCCEEEEEECSS---------------------
T ss_pred             cccccc-------cccceeeeeec--cCCceEE-Eeecccceeeeccceeeeeeccccc---------------------
Confidence            965422       23345566654  4444444 4556778889887765544433221                     


Q ss_pred             cceeEEEEcCCCCEEEEEeCC-CeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  659 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  659 (1120)
                         ...+++++++.+++++.+ +.+++|++...+....+.. .+...+.+++|+|++.+|++|+.||.|++||+.++...
T Consensus       122 ---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         122 ---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ---CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ---eeeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeecccccc
Confidence               122344455567777765 5799999987666555543 23346899999999999999999999999998765211


Q ss_pred             hhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeeccc
Q 001224          660 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  739 (1120)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~  739 (1120)
                      ...+                                                                            
T Consensus       198 ~~~~----------------------------------------------------------------------------  201 (287)
T d1pgua2         198 TSRW----------------------------------------------------------------------------  201 (287)
T ss_dssp             ECCS----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             CCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCC
Q 001224          740 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  819 (1120)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~  819 (1120)
                                    .+|...|.+++|+|++...                                               
T Consensus       202 --------------~~h~~~v~~~~~~p~~~~~-----------------------------------------------  220 (287)
T d1pgua2         202 --------------AFRTSKINAISWKPAEKGA-----------------------------------------------  220 (287)
T ss_dssp             --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred             --------------cccccccceeeeccccccc-----------------------------------------------
Confidence                          2367788899998877521                                               


Q ss_pred             CCCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCC-CceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          820 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       820 ~~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                                ..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus       221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence                      22345778999999 99999999976 556777889999999999999 66 5788999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=2.4e-26  Score=263.24  Aligned_cols=364  Identities=9%  Similarity=0.008  Sum_probs=243.1

Q ss_pred             EEecCCCe-EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCe
Q 001224          371 DFHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  449 (1120)
Q Consensus       371 ~~spdg~~-lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~  449 (1120)
                      .++.|.+. ++++.+.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|++++.|++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~   84 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR   84 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence            35555443 457788899999999999998874                   4444 36999999999999999999999


Q ss_pred             EEEEEccCCceee--eeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCC
Q 001224          450 VQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  527 (1120)
Q Consensus       450 v~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  527 (1120)
                      |++||+.+++...  ......+|.+.+.+++|+|||++ +++++..++.+++||..++.++..+.+|...+..+.+.+.+
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            9999999887432  22334567888899999999996 45677789999999999999999998887777666654443


Q ss_pred             CceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CCCeEEE
Q 001224          528 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKF  606 (1120)
Q Consensus       528 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  606 (1120)
                      . ...+..+.|+...+|.......+............+...+.+         ..+..+.++|++++++++. .+..+.+
T Consensus       164 ~-~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~a~~~~~~~~~  233 (426)
T d1hzua2         164 R-VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA---------PFLADGGWDSSHRYFMTAANNSNKVAV  233 (426)
T ss_dssp             C-EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC---------SSEEEEEECTTSCEEEEEETTCSEEEE
T ss_pred             c-eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC---------CccEeeeECCCCcEEEeeeecccceee
Confidence            3 345555666666655544433332222222222222222222         2566677777777777765 6778999


Q ss_pred             EECCCCceeEEEecCCCCCCcCeEEEcCCCCE-EE--EEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCccc
Q 001224          607 WDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LA--VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  683 (1120)
Q Consensus       607 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1120)
                      |+..+++.+................+...+.. +.  ....++.+.+|+.....                          
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~--------------------------  287 (426)
T d1hzua2         234 IDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------------------------  287 (426)
T ss_dssp             EETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT--------------------------
T ss_pred             eecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc--------------------------
Confidence            99999998888775544333444444433321 11  12234555555432220                          


Q ss_pred             chhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEE
Q 001224          684 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  763 (1120)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l  763 (1120)
                                                                      +.+|+                           
T Consensus       288 ------------------------------------------------~~~~~---------------------------  292 (426)
T d1hzua2         288 ------------------------------------------------HPQYA---------------------------  292 (426)
T ss_dssp             ------------------------------------------------CTTTB---------------------------
T ss_pred             ------------------------------------------------ccccc---------------------------
Confidence                                                            00000                           


Q ss_pred             EEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEE--
Q 001224          764 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS--  841 (1120)
Q Consensus       764 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~--  841 (1120)
                                                                     ++.. ..+.  +|...+..++|+||++++++  
T Consensus       293 -----------------------------------------------~~~~-~~l~--g~~~~v~~v~~sPdg~~l~v~~  322 (426)
T d1hzua2         293 -----------------------------------------------WKKV-AELQ--GQGGGSLFIKTHPKSSHLYVDT  322 (426)
T ss_dssp             -----------------------------------------------TSEE-EEEE--CSSSCCCCEECCTTCSEEEECC
T ss_pred             -----------------------------------------------ceEe-EEEe--cCCCceeEEEcCCCCceEEEee
Confidence                                                           0000 0011  16677788888888888885  


Q ss_pred             -----Ee-CCcEEEEEcCCCceeeee---------cCCCCCeEEEEEecCCCcEEE-EE----eCCCcEEEEEeecceee
Q 001224          842 -----AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIA-IG----MDDSSIQIYNVRVDEVK  901 (1120)
Q Consensus       842 -----~s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~sp~d~~~la-sg----~~dg~v~vwd~~~~~~~  901 (1120)
                           +. +++|+|||+.+++...++         ..+...+.+++||| ||++++ ++    +.+|.|+|||..+++..
T Consensus       323 ~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         323 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             cCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence                 33 688999999998876554         23566799999999 787664 33    35788999999999999


Q ss_pred             EeecccccceEEEEEccCCCEE
Q 001224          902 SKLKGHSKRITGLAFSHALNVL  923 (1120)
Q Consensus       902 ~~l~~h~~~V~~l~~s~d~~~l  923 (1120)
                      ..+.++.      .++|+|++-
T Consensus       402 ~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         402 AVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEECCTT------CCSEEEEEE
T ss_pred             EEECCCC------ccCCCceEe
Confidence            9888774      345777664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-25  Score=238.87  Aligned_cols=235  Identities=18%  Similarity=0.297  Sum_probs=184.8

Q ss_pred             eccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCC
Q 001224          360 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  439 (1120)
Q Consensus       360 ~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  439 (1120)
                      ..+|...|+|++  +||+ +||+|+.||+|+|||+.+++.+.                   .+.+|.+.|++++|  +++
T Consensus        11 ~~~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~   66 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DER   66 (293)
T ss_dssp             CCSSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSS
T ss_pred             cCCCCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--ccc
Confidence            335888999875  5788 59999999999999999998876                   37899999999887  678


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce---eEEeecccc
Q 001224          440 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEA  516 (1120)
Q Consensus       440 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~h~~  516 (1120)
                      +|++|+.|+.|++|++..+....   ....+....  ..+.+...  .++++..++.+++||......   ...+..|..
T Consensus        67 ~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (293)
T d1p22a2          67 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAV--LHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  139 (293)
T ss_dssp             EEEEEETTSCEEEEESSSCCEEE---EECCCCSCE--EEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             eeecccccccccccccccccccc---ccccccccc--cccccccc--ceeecccccceeEeecccccccccccccccccc
Confidence            99999999999999999987554   233333322  33444455  589999999999999987654   445667888


Q ss_pred             CeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEE
Q 001224          517 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  596 (1120)
Q Consensus       517 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~  596 (1120)
                      .|..+.+..    ..+++++.|+.|++||+.+.+....+..+...+..+.++                       +..++
T Consensus       140 ~v~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~  192 (293)
T d1p22a2         140 AVNVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVV  192 (293)
T ss_dssp             CEEEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEE
T ss_pred             ccccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC-----------------------CCeEE
Confidence            888777532    478899999999999999887777666665555444432                       34799


Q ss_pred             EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCc
Q 001224          597 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  656 (1120)
Q Consensus       597 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  656 (1120)
                      +++.||.|++||+.+...+.....+..  .+  ..+++++.+|++|+.||.|++||+...
T Consensus       193 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         193 SGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             EecCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence            999999999999999999888875543  33  456778999999999999999998654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=8.6e-27  Score=260.81  Aligned_cols=344  Identities=14%  Similarity=0.076  Sum_probs=230.0

Q ss_pred             eEEEEec-CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC
Q 001224          368 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  446 (1120)
Q Consensus       368 ~~v~~sp-dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  446 (1120)
                      ..-.||| ||++ +|+++ +|.|+|||+.++..+.                     .+|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 9996 66665 5899999998877653                     258999999999999999998776


Q ss_pred             CC--eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeec
Q 001224          447 RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  524 (1120)
Q Consensus       447 dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  524 (1120)
                      +.  .|++||.++++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            53  7999999998754    3778999999999999999  79999999999999999999999999898888888885


Q ss_pred             cCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeE
Q 001224          525 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  604 (1120)
Q Consensus       525 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  604 (1120)
                      +  +|++|+.++.++..                                                     .+.+..++.+
T Consensus       137 p--dg~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~  161 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAI  161 (360)
T ss_dssp             T--TSCEEEEEEEECSS-----------------------------------------------------TTCSCCEEEE
T ss_pred             c--ceeeeeeecccccc-----------------------------------------------------ceeeccccce
Confidence            4  55677765432221                                                     1223445678


Q ss_pred             EEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccc
Q 001224          605 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  684 (1120)
Q Consensus       605 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1120)
                      ++||+.+++.......   ...+..++|+|||++|++++.++.+.+|+...........    ......      .+.. 
T Consensus       162 ~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~----~~~~~~------~~~~-  227 (360)
T d1k32a3         162 HVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV----SKPFVI------PLIP-  227 (360)
T ss_dssp             EEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC----BEEEEE------ESST-
T ss_pred             eeeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEcccccccceeeccc----cceEEE------eccc-
Confidence            9999988776554432   2357789999999999999999999999875441111000    000000      0000 


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCC---cceeeecccCCCCccceeeccCCccccccEE
Q 001224          685 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND---KSKVWKLTELSEPNQCRSLRLPENLRATKIS  761 (1120)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~  761 (1120)
                                              .......+.+++..+.++..+.   ..++|.+....  .....+    ..+...+.
T Consensus       228 ------------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~  277 (360)
T d1k32a3         228 ------------------------GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMI----IPLESSIL  277 (360)
T ss_dssp             ------------------------TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEE----EECSSEEE
T ss_pred             ------------------------CccccceECCCcCcccccceeecccccceeecccCc--CceeEe----eecCCCce
Confidence                                    0001122233344433333221   12344332110  111111    01223333


Q ss_pred             EEEEcCC---CceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCE
Q 001224          762 RLIFTNS---GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  838 (1120)
Q Consensus       762 ~l~~s~~---g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~  838 (1120)
                      .+.+...   +.++++++.++.+++||+                      .+++...       +...|.+++|||||++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~----------------------~~~~~~~-------~~~~v~~~~~SpDG~~  328 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDV----------------------KTRKVTE-------VKNNLTDLRLSADRKT  328 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEET----------------------TTCCEEE-------EEEEEEEEEECTTSCE
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEEC----------------------CCCeEEE-------ecCCcCEEEECCCCCE
Confidence            3333333   334566666777877775                      3333221       4556899999999999


Q ss_pred             EEEEe-CCcEEEEEcCCCceeeeecCCCCCe
Q 001224          839 VMSAS-GGKISLFNMMTFKTMATFMPPPPAA  868 (1120)
Q Consensus       839 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i  868 (1120)
                      |++++ ||.|++||+++++...++..+..++
T Consensus       329 l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         329 VMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             EEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             EEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            99999 8999999999998888876555443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2e-25  Score=254.39  Aligned_cols=355  Identities=14%  Similarity=0.096  Sum_probs=247.7

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEEccCC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  458 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~  458 (1120)
                      ++++.+.||+|.|||.++++.+..                   +..| ..+..++|||||++|++++.|++|++||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            568999999999999999999875                   3334 36999999999999999999999999999887


Q ss_pred             ce--eeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeecccc-----------CeEEEeecc
Q 001224          459 DE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----------PVYSVCPHH  525 (1120)
Q Consensus       459 ~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----------~v~~~~~~~  525 (1120)
                      +.  ...+....+|.+.+.+.+|+|||++ ++++++.++.|++||..+++++..+..|..           ....+.+++
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            63  2333344567788888999999995 468899999999999999999988765543           344455544


Q ss_pred             CCCceEEEEEecCCeEEEEecCCCCCceeee-CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CCCe
Q 001224          526 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFS  603 (1120)
Q Consensus       526 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  603 (1120)
                      +.. .++++...++.|.+||..+.+...... .....+                     ..++++|+|+++++++ .++.
T Consensus       173 dg~-~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~---------------------~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         173 YRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFL---------------------HDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             SSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSE---------------------EEEEECTTSCEEEEEEGGGTE
T ss_pred             CCC-EEEEEEccCCeEEEEEccCCCcceEEEEcccCcc---------------------ccceECCCCCEEEEeccccce
Confidence            322 345667778999999987654332211 122233                     4455555555666655 5678


Q ss_pred             EEEEECCCCceeEEEecCC---CCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCcchhhhhcccccccccccCCCCCC
Q 001224          604 IKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  679 (1120)
Q Consensus       604 i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1120)
                      +.++|..+++.+..+....   +........+...+...++.. .++.+.+|+.....                      
T Consensus       231 v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----------------------  288 (432)
T d1qksa2         231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----------------------  288 (432)
T ss_dssp             EEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----------------------
T ss_pred             EEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc----------------------
Confidence            9999999988887775332   111222233333343333332 25556666532210                      


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCcccccc
Q 001224          680 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  759 (1120)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  759 (1120)
                                                                                             .  ..+...
T Consensus       289 -----------------------------------------------------------------------~--~~~~~~  295 (432)
T d1qksa2         289 -----------------------------------------------------------------------H--PDNAWK  295 (432)
T ss_dssp             -----------------------------------------------------------------------C--TTTBTS
T ss_pred             -----------------------------------------------------------------------c--cccccE
Confidence                                                                                   0  114456


Q ss_pred             EEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEE
Q 001224          760 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  839 (1120)
Q Consensus       760 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l  839 (1120)
                      +....+++++..+++++.+...++|.....                               ..|.....++++ ||++.+
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------------------------------~~~~~~~~sv~v-pDg~~l  343 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATL-------------------------------NPEAEISGSVAV-FDIKAM  343 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTT-------------------------------CSSHHHHTCEEE-EEGGGC
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccC-------------------------------CCCCCeeeEEEE-Eechhh
Confidence            777888999888888888888888865211                               013333445665 999999


Q ss_pred             EEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe-----CCCcEEEEEeecceeeEeeccc
Q 001224          840 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH  907 (1120)
Q Consensus       840 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-----~dg~v~vwd~~~~~~~~~l~~h  907 (1120)
                      ++++ |+.+++|++.++..   +..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       344 a~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         344 TGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             CCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            9999 89999999865533   335677899999999 888775553     4688999999999988888764

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-25  Score=247.67  Aligned_cols=310  Identities=10%  Similarity=-0.006  Sum_probs=213.4

Q ss_pred             eecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE---EeeccccCeEEEeeccCCCceEEEEEecCCeEE
Q 001224          466 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  542 (1120)
Q Consensus       466 ~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  542 (1120)
                      .+++|++.|++|+|+|+++  +|++|+.||+|+|||+.++....   ...+|.++|.+++|++.. +.+|++|+.||.|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~-~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC-CCEEEEccccccee
Confidence            5779999999999999999  79999999999999998765433   334699999999997643 47899999999999


Q ss_pred             EEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEE----
Q 001224          543 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI----  618 (1120)
Q Consensus       543 iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----  618 (1120)
                      +|++...........+....                    .....+.++...+++++.++.+++||++++......    
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANL--------------------GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCS--------------------CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             eeeccccccccccccccccc--------------------ccccccccccccccccccccccceeeccccccceeeeccc
Confidence            99998766655444333222                    222333445568999999999999998755433222    


Q ss_pred             ecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001224          619 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  698 (1120)
Q Consensus       619 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1120)
                      ..+..........+.+++..+++++.|+.|++|++...... .....                                 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~---------------------------------  188 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIE---------------------------------  188 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-CCEEE---------------------------------
T ss_pred             ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc-ceeee---------------------------------
Confidence            22222233456778889999999999999999998765211 10000                                 


Q ss_pred             cccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEE-EcCCCceEEEecc
Q 001224          699 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI-FTNSGNAILALAS  777 (1120)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~s~~g~~l~~~~~  777 (1120)
                                                           .                 ......+.... +..++..+++++.
T Consensus       189 -------------------------------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         189 -------------------------------------E-----------------SGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             -------------------------------------E-----------------CSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             -------------------------------------e-----------------cccccceeeeEeecCCCCEEEeecC
Confidence                                                 0                 00112223333 3445666777888


Q ss_pred             CceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeCCcEEEEEcCCCce
Q 001224          778 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT  857 (1120)
Q Consensus       778 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~  857 (1120)
                      +|.+.+|++.....                      ..       .....                    ..+.  ....
T Consensus       215 dg~~~v~~~~~~~~----------------------~~-------~~~~~--------------------~~~~--~~~~  243 (342)
T d1yfqa_         215 DGRVAVEFFDDQGD----------------------DY-------NSSKR--------------------FAFR--CHRL  243 (342)
T ss_dssp             TSEEEEEECCTTCC----------------------ST-------TCTTC--------------------EEEE--CCCC
T ss_pred             CCeEEEEEecCCcc----------------------ee-------ecccc--------------------ceee--eeee
Confidence            88888876521100                      00       00000                    0000  0111


Q ss_pred             eeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEEC
Q 001224          858 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  937 (1120)
Q Consensus       858 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~  937 (1120)
                      ......|...|++++|+| ++++||+|+.||.|++||+.+++.+..+..+ ..+..++|+|++++|++++.|+++++|..
T Consensus       244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            122345677899999999 8999999999999999999999998888643 34556788899999999999998888865


Q ss_pred             CC
Q 001224          938 DG  939 (1120)
Q Consensus       938 ~~  939 (1120)
                      ..
T Consensus       322 ~~  323 (342)
T d1yfqa_         322 ID  323 (342)
T ss_dssp             SC
T ss_pred             eC
Confidence            43

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=5.3e-25  Score=250.87  Aligned_cols=361  Identities=9%  Similarity=0.016  Sum_probs=249.7

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCcee--EEee--
Q 001224          437 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFE--  512 (1120)
Q Consensus       437 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~--~~~~--  512 (1120)
                      +.-++++.+.||+|.|||.++++.++   .+..| ..+..++|||||+  ++++++.|+.|++||+.+++..  ..+.  
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            33345788899999999999999877   45555 3699999999999  6888999999999999887643  3332  


Q ss_pred             -ccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcC
Q 001224          513 -GHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  590 (1120)
Q Consensus       513 -~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~  590 (1120)
                       +|.+.+.+..|  ++||++| ++++.+++|++||..+.+....+..+...+....+.+++.          ...+.+++
T Consensus       105 ~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~s~  172 (432)
T d1qksa2         105 SEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR----------VAAILASH  172 (432)
T ss_dssp             SEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC----------EEEEEECS
T ss_pred             CCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc----------eeEEEECC
Confidence             45455555554  5667765 7788899999999999888887777665555556666653          44567788


Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEccCcchhhhhcccccc
Q 001224          591 TKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLAY  668 (1120)
Q Consensus       591 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~  668 (1120)
                      ++..++ +...++.|.+||..+++.........+ ..+..++|+|||+++++++.+ +.+.++|..++ +....+.....
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~  250 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQ  250 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSS
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCcc
Confidence            887764 566789999999988775543332221 247789999999988887764 57778887665 22221110000


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcccee
Q 001224          669 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  748 (1120)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~  748 (1120)
                                                                                                      
T Consensus       251 --------------------------------------------------------------------------------  250 (432)
T d1qksa2         251 --------------------------------------------------------------------------------  250 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCCccccccEEEEEEcCCCceEEEec-cCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCc
Q 001224          749 LRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  827 (1120)
Q Consensus       749 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v  827 (1120)
                           ..+........+...+....+.. .++.+.+|...                      ...     ..  .+...+
T Consensus       251 -----~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~----------------------~~~-----~~--~~~~~v  296 (432)
T d1qksa2         251 -----TPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD----------------------PEG-----HP--DNAWKI  296 (432)
T ss_dssp             -----SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC----------------------TTT-----CT--TTBTSE
T ss_pred             -----ccccCcccceecCCCCceecccccCCceEEecccc----------------------ccc-----cc--ccccEE
Confidence                 00111122223333333232222 25667776541                      111     11  156678


Q ss_pred             cEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224          828 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  906 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  906 (1120)
                      ....+++++..+++++ +++.++|+..+..      .|.....++++ | |++.|++++.|+.+++|++.++.   .+..
T Consensus       297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l~~  365 (432)
T d1qksa2         297 LDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GITE  365 (432)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TCCS
T ss_pred             EEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEeccccccc---ccCC
Confidence            8899999999999988 8999999876533      23333345555 8 89999999999999999987664   3346


Q ss_pred             cccceEEEEEccCCCEEEEEe-----CCCCEEEEECCCccc
Q 001224          907 HSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK  942 (1120)
Q Consensus       907 h~~~V~~l~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~  942 (1120)
                      |...|.+++|||||++|+...     .++.|+|||..+.+.
T Consensus       366 ~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         366 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            778899999999999885443     468899999999654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1e-25  Score=251.88  Aligned_cols=283  Identities=9%  Similarity=0.009  Sum_probs=207.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCc--eEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          756 RATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                      |...|.+++|+|||+.|++++.+.  .+++|+.                      .++....  +.  .|...+.+++|+
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~----------------------~~~~~~~--~~--~~~~~v~~~~~s   94 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY----------------------RTGKAEK--FE--ENLGNVFAMGVD   94 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET----------------------TTCCEEE--CC--CCCCSEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC----------------------CCCcEEE--ee--CCCceEEeeeec
Confidence            667899999999999998877653  6777765                      3443332  22  388899999999


Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEe----------CCCcEEEEEeecceeeE
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~  902 (1120)
                      |||++|++++ ++.+++|++.+++....+..|...+.+++|+| |+++||.+.          .++.+++|++.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            9999999998 89999999999999999998999999999999 899998654          34569999998877544


Q ss_pred             eecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce--eeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC-
Q 001224          903 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-  978 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d-  978 (1120)
                       +..|...+..++|+|||++|++++.|+.+.+|+..........  .......+.   ..+..+.|++++..++.+ .+ 
T Consensus       174 -~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~  249 (360)
T d1k32a3         174 -ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL  249 (360)
T ss_dssp             -CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred             -ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence             4457778899999999999999999999999997664321110  011111111   234556778888776653 11 


Q ss_pred             ----CeEEEEEcCCceeeeccccCCCCCCeeEEEECCC---CcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCC
Q 001224          979 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1051 (1120)
Q Consensus       979 ----~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~ 1051 (1120)
                          ..+..++...+......   .+.+.+..+.+.++   +.++++++.++.|++||+.+++.....        +   
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~---  315 (360)
T d1k32a3         250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------N---  315 (360)
T ss_dssp             TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--------E---
T ss_pred             cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec--------C---
Confidence                22444444444433222   23445555555544   446888889999999999998764221        1   


Q ss_pred             CCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1052 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1052 ~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                       .+.  +++|+| ||++|++++.||.|++|++.+++
T Consensus       316 -~v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         316 -NLT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             -EEE--EEEECT-TSCEEEEEETTSCEEEEESSCTT
T ss_pred             -CcC--EEEECC-CCCEEEEEECCCeEEEEECCCCC
Confidence             144  899999 79999999999999999999988

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.3e-23  Score=240.34  Aligned_cols=361  Identities=9%  Similarity=0.025  Sum_probs=238.3

Q ss_pred             EEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee
Q 001224          477 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  556 (1120)
Q Consensus       477 v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  556 (1120)
                      +.++.|.+.+++++.+.||+|+|||+.+++.+.++..|. .+..++|+  +||+++++++.|++|++||+.+.+......
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS--PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC--CCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence            457777777678999999999999999999999999774 58889985  577899999999999999999877554322


Q ss_pred             -----CCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeEEEecCCCCCCcCeE
Q 001224          557 -----APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI  630 (1120)
Q Consensus       557 -----~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  630 (1120)
                           .+...+.+++|                     +|||+++++ +..++.+++||..++.++..+..+..  .+...
T Consensus       101 i~~~~~~~~~~~s~~~---------------------spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~  157 (426)
T d1hzua2         101 IKIGIEARSVESSKFK---------------------GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQ  157 (426)
T ss_dssp             EECCSEEEEEEECCST---------------------TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSC
T ss_pred             EeCCCCCcceEEeeee---------------------cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--Cccce
Confidence                 12222233334                     445556644 56899999999999999888876543  45667


Q ss_pred             EEcCCCCEE-EEEECCCcEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCC
Q 001224          631 RFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG  709 (1120)
Q Consensus       631 ~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1120)
                      .+.+++... ++++.|+...++.....                                                     
T Consensus       158 ~~~~~~~~~~i~~s~d~~~~~~~~~~~-----------------------------------------------------  184 (426)
T d1hzua2         158 TYHPEPRVAAIIASHEHPEFIVNVKET-----------------------------------------------------  184 (426)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTT-----------------------------------------------------
T ss_pred             eecCCCceeEEEECCCCCEEEEecCCC-----------------------------------------------------
Confidence            777777643 45555666555543221                                                     


Q ss_pred             CCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeeccc
Q 001224          710 MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  789 (1120)
Q Consensus       710 ~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~  789 (1120)
                                          +.+.+++...                             +.         .+.+..    
T Consensus       185 --------------------~~i~~~~~~~-----------------------------~~---------~~~~~~----  202 (426)
T d1hzua2         185 --------------------GKVLLVNYKD-----------------------------ID---------NLTVTS----  202 (426)
T ss_dssp             --------------------TEEEEEECSS-----------------------------SS---------SCEEEE----
T ss_pred             --------------------CeEEEEEecc-----------------------------cc---------ceeeEE----
Confidence                                0111111100                             00         000000    


Q ss_pred             ccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCC--C
Q 001224          790 ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPP--P  865 (1120)
Q Consensus       790 ~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~--~  865 (1120)
                                                     .++...+..++++|++++++++.  +..+.+++..+++.+......  .
T Consensus       203 -------------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (426)
T d1hzua2         203 -------------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  251 (426)
T ss_dssp             -------------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC
T ss_pred             -------------------------------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc
Confidence                                           01445567788888888887776  467888888888776655322  2


Q ss_pred             CCeEEEEEecCCCcEE--EEEeCCCcEEEEEeec-------ceeeEeecccccceEEEEEccCCCEEEE-------EeCC
Q 001224          866 PAATFLAFHPQDNNII--AIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-------SGAD  929 (1120)
Q Consensus       866 ~~i~~l~~sp~d~~~l--asg~~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~s~D  929 (1120)
                      .......+.......+  +..+.|+.+.+|+...       ++....+.+|...+.+++|+||+++|++       ++.|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~  331 (426)
T d1hzua2         252 HPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS  331 (426)
T ss_dssp             CCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHH
T ss_pred             cccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccC
Confidence            2223333333122222  2233567777777543       4778889999999999999999999994       5668


Q ss_pred             CCEEEEECCCccccccee-eeccCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceeeeccccCCCCC
Q 001224          930 SQLCVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSA 1002 (1120)
Q Consensus       930 g~v~iWd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~fspdg~~la~~------~d~~v~i~d~~~~~~~~~~~~~~h~~ 1002 (1120)
                      ++|+|||+.+++...... .....++......+.+++|||||++++++      .++.|+|||..+++....+.  ++. 
T Consensus       332 ~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~-  408 (426)
T d1hzua2         332 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR-  408 (426)
T ss_dssp             TCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT-
T ss_pred             CEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC-
Confidence            999999999876543211 11111122222468889999999987542      46789999999999887765  222 


Q ss_pred             CeeEEEECCCCcEEE
Q 001224         1003 PITHATFSCDSQLVY 1017 (1120)
Q Consensus      1003 ~v~~l~~s~dg~~l~ 1017 (1120)
                           .++|+|+|-+
T Consensus       409 -----~~tp~Gk~~~  418 (426)
T d1hzua2         409 -----LITPTGKFNV  418 (426)
T ss_dssp             -----CCSEEEEEEH
T ss_pred             -----ccCCCceEeE
Confidence                 4478888743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=7.1e-21  Score=209.76  Aligned_cols=293  Identities=11%  Similarity=0.075  Sum_probs=190.6

Q ss_pred             CEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEE-EEECCCcEEEEEccCcchhhhhccccccccc
Q 001224          593 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS  671 (1120)
Q Consensus       593 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  671 (1120)
                      +++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +....+..+..   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~---   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTP---   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBT---
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCC---
Confidence            479999999999999999999999998765555678999999999875 5667899999999887 33322221100   


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeecc
Q 001224          672 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  751 (1120)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~  751 (1120)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (337)
T d1pbyb_          78 --------------------------------------------------------------------------------   77 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEE
Q 001224          752 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  831 (1120)
Q Consensus       752 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~  831 (1120)
                        ..+...+..++|+|+++.++++..+.....|...                                            
T Consensus        78 --~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~--------------------------------------------  111 (337)
T d1pbyb_          78 --EERVKSLFGAALSPDGKTLAIYESPVRLELTHFE--------------------------------------------  111 (337)
T ss_dssp             --TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE--------------------------------------------
T ss_pred             --cccccceeeEEEcCCCcEEEEeecCCcceeeecc--------------------------------------------
Confidence              0012233457889999888877766544433221                                            


Q ss_pred             EccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-
Q 001224          832 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-  910 (1120)
Q Consensus       832 ~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-  910 (1120)
                                ..+..+.+||..+++....+.. ...+..++|+| |++++++++.  .+.+||..+++....+..+... 
T Consensus       112 ----------~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~  177 (337)
T d1pbyb_         112 ----------VQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEA  177 (337)
T ss_dssp             ----------ECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTT
T ss_pred             ----------ccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccc
Confidence                      1133445555555554444442 23344555555 4555544432  2444555554444443322110 


Q ss_pred             ----------------------eEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEcc
Q 001224          911 ----------------------ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  968 (1120)
Q Consensus       911 ----------------------V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fsp  968 (1120)
                                            +.......+......++.++.+.+|+..++.........    +.   ..+..+.++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~  250 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---VFYFSTAVNP  250 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECT
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---cceEEEEecc
Confidence                                  000111112222223344556888988876543222111    11   2567889999


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          969 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       969 dg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      ++.+++.+ ++.+++||+.+++.+..+.   +...+.+++|+|||++|++++.|+.|+|||..+++.+..++
T Consensus       251 ~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         251 AKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            99988765 6899999999999988875   35678999999999999999999999999999999999887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.3e-21  Score=212.47  Aligned_cols=325  Identities=10%  Similarity=0.012  Sum_probs=210.7

Q ss_pred             EEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeec-ccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          432 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       432 l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      ++|+++++||++++.|++|.+||+++++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999999998765   444 45667899999999996 457788899999999999999877


Q ss_pred             eeccccC------eEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEeccccccee
Q 001224          511 FEGHEAP------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  584 (1120)
Q Consensus       511 ~~~h~~~------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~  584 (1120)
                      +......      +..++|  ++||.+++.++.+.....                                         
T Consensus        78 ~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~-----------------------------------------  114 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLN-----------------------------------------  114 (346)
T ss_dssp             EESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred             ecccccccccCCceEEEEE--ecCCCEEEEEecCCccee-----------------------------------------
Confidence            7533221      222333  233334443332211110                                         


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc
Q 001224          585 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       585 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                                ......++.+.+|+..+++....+..+.....+..+.+++++.+++.+   +.+.+|+..++ .....+.
T Consensus       115 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~  180 (346)
T d1jmxb_         115 ----------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG-KYTVALP  180 (346)
T ss_dssp             ----------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC-CEEEEEC
T ss_pred             ----------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC-CEEEEEe
Confidence                      122345788999999887765444332222346667888888776643   56889998776 3333332


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee-eccCCCcceeeecccCCCC
Q 001224          665 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEP  743 (1120)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~  743 (1120)
                      .+...                                          ....+.+++..+. ....++.+.+++..     
T Consensus       181 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  213 (346)
T d1jmxb_         181 LRNWN------------------------------------------RKGYSAPDVLYFWPHQSPRHEFSMLYTI-----  213 (346)
T ss_dssp             STTCC------------------------------------------CTTBCCCBCCCCCCCCCTTCEEEEEEEE-----
T ss_pred             cCCCc------------------------------------------cceEEeccccEEEEEecCCCceEeeeee-----
Confidence            22111                                          0112223333332 22222333333221     


Q ss_pred             ccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCC
Q 001224          744 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  823 (1120)
Q Consensus       744 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~  823 (1120)
                                         ..+.+....+.++..++.+.+|++                      .++.........  +
T Consensus       214 -------------------~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~  250 (346)
T d1jmxb_         214 -------------------ARFKDDKQDPATADLLYGYLSVDL----------------------KTGKTHTQEFAD--L  250 (346)
T ss_dssp             -------------------EEC-------CCCEEEEEEEEEET----------------------TTCCEEEEEEEE--C
T ss_pred             -------------------eeeccCceeEeeccCCceEEEEEC----------------------CCCceEEEEeec--c
Confidence                               111222333344444555666654                      333332222222  6


Q ss_pred             CCCccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe
Q 001224          824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      ...+..+.+++++.+++...++.|++||..+++.+..+. +...+.+++|+| |+++|++|+.||.|+|||+.+++.+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            677888999999999998888899999999999888876 455799999999 899999999999999999999999988


Q ss_pred             eccccc
Q 001224          904 LKGHSK  909 (1120)
Q Consensus       904 l~~h~~  909 (1120)
                      ++.+.+
T Consensus       329 i~~p~g  334 (346)
T d1jmxb_         329 IKLPGG  334 (346)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            875443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.6e-20  Score=205.20  Aligned_cols=313  Identities=9%  Similarity=0.034  Sum_probs=206.4

Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCe
Q 001224          439 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       439 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      +|+++++.|++|.|||+++++.+..+ .+..+...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999999876532 23345567889999999995 44678889999999999999998887654332


Q ss_pred             -----EEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          519 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       519 -----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                           ..++|+  +++.+++++..+.....|                                                 
T Consensus        80 ~~~~~~~v~~s--~dg~~l~~~~~~~~~~~~-------------------------------------------------  108 (337)
T d1pbyb_          80 RVKSLFGAALS--PDGKTLAIYESPVRLELT-------------------------------------------------  108 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred             cccceeeEEEc--CCCcEEEEeecCCcceee-------------------------------------------------
Confidence                 234443  344555555443333222                                                 


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhccccccccccc
Q 001224          594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  673 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  673 (1120)
                        .....++.+.+||..+++....+....   .+.+++|+|||+++++++.  .+.+||..++ .....+..+....   
T Consensus       109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~---  177 (337)
T d1pbyb_         109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEA---  177 (337)
T ss_dssp             --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTT---
T ss_pred             --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCccc---
Confidence              123356789999999999988887543   4788999999999998864  5778998876 3333222211100   


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCC
Q 001224          674 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  753 (1120)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~  753 (1120)
                                                             ...+.+++..+.......                       
T Consensus       178 ---------------------------------------~~~~~~~~~~~~~~~~~~-----------------------  195 (337)
T d1pbyb_         178 ---------------------------------------ETYAQPDVLAVWNQHESS-----------------------  195 (337)
T ss_dssp             ---------------------------------------TTBCCCBCCCCCCCCTTT-----------------------
T ss_pred             ---------------------------------------cceecCCcceeecccccc-----------------------
Confidence                                                   000111111111111000                       


Q ss_pred             ccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEc
Q 001224          754 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  833 (1120)
Q Consensus       754 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s  833 (1120)
                        +...+.......+.........++.+.+|+.                      .++.........  +...+..++++
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~~~~~~~~~~~  249 (337)
T d1pbyb_         196 --GVMATPFYTARKDIDPADPTAYRTGLLTMDL----------------------ETGEMAMREVRI--MDVFYFSTAVN  249 (337)
T ss_dssp             --TEEEEEEEEEBTTSCTTSGGGEEEEEEEEET----------------------TTCCEEEEEEEE--CSSCEEEEEEC
T ss_pred             --ceeeeeeeeeeeccceeeecccCccEEEEEc----------------------CCCcEEEEEecC--CCcceEEEEec
Confidence              1111111122222222333333444555543                      344333222222  56677888999


Q ss_pred             cCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecc
Q 001224          834 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  906 (1120)
Q Consensus       834 ~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  906 (1120)
                      +++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.|+.|+|||..+++.+.+++-
T Consensus       250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         250 PAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999888655 6899999999999988876 566789999999 999999999999999999999998888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=1.1e-19  Score=196.45  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=152.2

Q ss_pred             ccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeEe
Q 001224          827 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSK  903 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~  903 (1120)
                      +..+++++++.++++..  ++.+.+|+..+++....+.. .....+++|+| +++.+ +++..++.+.+|+..+++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeee
Confidence            34567777777666554  57799999998888887774 45678999999 56554 5666788999999999988888


Q ss_pred             ecccccceEEEEEccCCCEEEEEeCC-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e---C
Q 001224          904 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H---E  978 (1120)
Q Consensus       904 l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~---d  978 (1120)
                      +..+ ..+..+++++++..+++++.+ +.+.+|+....+.     .......    ..+..++|++++..++++ .   +
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----IDTVKVE----AAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEECS----SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             cccC-CCceEEEeeccccceeeecccccccccccccceee-----eeccccc----CCcceeecccccccccccccccee
Confidence            7755 457889999999988877766 5566777666432     2222111    245789999999988763 2   3


Q ss_pred             CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEE-EEEEcCCcEEEEEcCCcceeeeeC
Q 001224          979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +.|.+||+.+++.+..+..   ...+.+++|||||++| ++++.|+.|+|||+.+++.+..+.
T Consensus       224 ~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            6799999999999887653   4578999999999987 566778999999999999998876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=8.7e-21  Score=209.94  Aligned_cols=331  Identities=9%  Similarity=-0.015  Sum_probs=219.6

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE-EECCCcEEEEEccCcchhhhhccc
Q 001224          587 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFEN  665 (1120)
Q Consensus       587 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~  665 (1120)
                      ++++++++|++++.++.|.+||+.+++.+.++..+.. ..+.+++|+|||+++++ +..++.|.+||+.++ +....+..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence            4667778999999999999999999999998875432 24679999999998755 457899999999887 33222211


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCcc
Q 001224          666 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  745 (1120)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~  745 (1120)
                      ....                                                                            
T Consensus        81 ~~~~----------------------------------------------------------------------------   84 (346)
T d1jmxb_          81 SSVP----------------------------------------------------------------------------   84 (346)
T ss_dssp             CCST----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCC
Q 001224          746 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  825 (1120)
Q Consensus       746 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~  825 (1120)
                              ..+...+..++|+|||+.++++..+.....|....          ....+.+|+..++...... .......
T Consensus        85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~-~~~~~~~  145 (346)
T d1jmxb_          85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPV-RTFPMPR  145 (346)
T ss_dssp             --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCS-EEEECCS
T ss_pred             --------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEE-EeeeccC
Confidence                    00122334578889998887776543322221110          0011233443443322110 0011234


Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .+..+.++++++.++.  ++.+.+|++.+++.+..+..+. ....+.++|+...+++.+..++.+.+++..         
T Consensus       146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  213 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI---------  213 (346)
T ss_dssp             SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE---------
T ss_pred             ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeee---------
Confidence            5666777788876654  4568999999999888877543 456677888333344444555566655432         


Q ss_pred             ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001224          906 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  985 (1120)
Q Consensus       906 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d  985 (1120)
                              ..+......++++..++.+.+|++.++......    ...+.   ..+..+.+++++.+++...++.|.+||
T Consensus       214 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d  278 (346)
T d1jmxb_         214 --------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----FADLT---ELYFTGLRSPKDPNQIYGVLNRLAKYD  278 (346)
T ss_dssp             --------EEC-------CCCEEEEEEEEEETTTCCEEEEE----EEECS---SCEEEEEECSSCTTEEEEEESEEEEEE
T ss_pred             --------eeeccCceeEeeccCCceEEEEECCCCceEEEE----eeccc---ceeEEEEEeCCCCEEEEecCCeEEEEE
Confidence                    122334455666777788999999886543221    11121   256788999999999888788999999


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCC
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1048 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g 1048 (1120)
                      ..+++.+..+..   ...+.+++|||||++|++++.|+.|+|||+.+++.+..++    +|.|
T Consensus       279 ~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~----~p~g  334 (346)
T d1jmxb_         279 LKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK----LPGG  334 (346)
T ss_dssp             TTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE----CSSS
T ss_pred             CCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE----CCCC
Confidence            999999887653   4579999999999999999999999999999999999988    6665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=3.2e-19  Score=192.86  Aligned_cols=227  Identities=15%  Similarity=0.146  Sum_probs=167.1

Q ss_pred             eEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE-EEECCCeEEEEEcc
Q 001224          378 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYH  456 (1120)
Q Consensus       378 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-s~~~dg~v~iwd~~  456 (1120)
                      |+.++++.|++|.|||+++++.+.+.+                    ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            567788899999999999998876421                    224578999999999885 56678999999999


Q ss_pred             CCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe
Q 001224          457 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  536 (1120)
Q Consensus       457 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  536 (1120)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ ....+++++++.. ..++++.
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~  135 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN  135 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence            998765   455554 5789999999996 6677888899999999999999888755 4556677755432 3445666


Q ss_pred             cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEe-CCCeEEEEECCCCcee
Q 001224          537 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLL  615 (1120)
Q Consensus       537 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  615 (1120)
                      .++.+.+|+..+......+..+. .+..+.                     ++|++..+++++ .++.+.+|+....+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGR-SPKGIA---------------------VTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCS-SEEEEE---------------------ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccceeeeeccccceeeecccCC-CceEEE---------------------eeccccceeeecccccccccccccceeee
Confidence            78899999998766555444332 233444                     444445666655 4577888888888777


Q ss_pred             EEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccCc
Q 001224          616 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDG  656 (1120)
Q Consensus       616 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~  656 (1120)
                      .......   .+..++|++++..++++..+   +.|++||..++
T Consensus       194 ~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         194 DTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ecccccC---CcceeeccccccccccccccceeeeeeeeecCCC
Confidence            7766443   36789999999988766543   56888876554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=3.7e-18  Score=190.93  Aligned_cols=331  Identities=9%  Similarity=0.002  Sum_probs=214.6

Q ss_pred             cCCCCceEEEEecCCCeEEEEE----eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCC
Q 001224          362 NQGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  437 (1120)
Q Consensus       362 ~h~~~v~~v~~spdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  437 (1120)
                      .+..++.+++++|||++++++.    +.++.|.+||.++++.+.+                   +..+..  ..++||||
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS   76 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence            3778899999999999865552    2346799999999998864                   223332  36999999


Q ss_pred             CCeEEEEE----------CCCeEEEEEccCCceeeeeeeecccccC-------eEEEEEcCCCCceEEEEecCCCcEEEE
Q 001224          438 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGG-------VNDIAFSHPNKQLCVITCGDDKTIKVW  500 (1120)
Q Consensus       438 g~~las~~----------~dg~v~iwd~~~~~~~~~~~~l~~h~~~-------V~~v~~s~d~~~~~l~s~s~d~~i~vw  500 (1120)
                      |++|++++          .++.|.+||..+++.+.   .+..+...       ...+.|+++++.+++.....++.+.+|
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            99999875          35789999999998765   33333332       255899999997666666777889999


Q ss_pred             ECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          501 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       501 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      +...++......    ...++.++++.. ..+++.+.|+.+.+|+................        .+.       .
T Consensus       154 ~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~  213 (373)
T d2madh_         154 VQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT--------AAQ-------N  213 (373)
T ss_pred             eccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccc--------cCc-------c
Confidence            988877665443    345566655543 46678889999999998876554433221100        000       0


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhh
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  660 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  660 (1120)
                      .......+++++ .++..+.++.+.+|+..++...................+.                           
T Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  265 (373)
T d2madh_         214 LLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWR---------------------------  265 (373)
T ss_pred             ceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeec---------------------------
Confidence            011122233332 3556667788888887655432221111000000000000                           


Q ss_pred             hhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccC
Q 001224          661 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  740 (1120)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~  740 (1120)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (373)
T d2madh_         266 --------------------------------------------------------------------------------  265 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccceeeccCCccccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCC
Q 001224          741 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  820 (1120)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~  820 (1120)
                                      ......+++++++..++..                                             
T Consensus       266 ----------------~~~~~~~~~~~d~~~~~~~---------------------------------------------  284 (373)
T d2madh_         266 ----------------PGGWQQVAYLKSSDGIYLL---------------------------------------------  284 (373)
T ss_pred             ----------------cCcceeeEEecCCCeEEEe---------------------------------------------
Confidence                            0111223444444432211                                             


Q ss_pred             CCCCCCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEeec
Q 001224          821 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       821 ~~~~~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~  897 (1120)
                                  ..++..++... ++.+.+||..+++.+..+. +...+.+++|+| ||+  ++++++.|+.|+|||+.+
T Consensus       285 ------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         285 ------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ------------cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCC
Confidence                        12333444444 7889999999999888876 566799999999 776  457889999999999999


Q ss_pred             ceeeEeecccccceEEEEEccC
Q 001224          898 DEVKSKLKGHSKRITGLAFSHA  919 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d  919 (1120)
                      ++.+..+.++....+.|++.++
T Consensus       351 g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEECCCCCCCcEEEEecC
Confidence            9999999988888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.9e-17  Score=183.57  Aligned_cols=245  Identities=10%  Similarity=-0.018  Sum_probs=146.3

Q ss_pred             CceEEEEecCCCeEEEEE----eCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          366 SPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+.+                   +..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence            344456789999865553    3356799999999988764                   2222  33479999999999


Q ss_pred             EEEE----------CCCeEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCce
Q 001224          442 GVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  507 (1120)
Q Consensus       442 as~~----------~dg~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~  507 (1120)
                      ++++          .|+.|++||..+++.+........+.    .....++|+++++.++++..+.+..+.+||..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8753          47899999999998766432222222    234568999999975555667788999999999999


Q ss_pred             eEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEE
Q 001224          508 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  587 (1120)
Q Consensus       508 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~  587 (1120)
                      +..+..+..... ..  ...  ...++.+.|+...++..................               .....+....
T Consensus       142 ~~~~~~~~~~~~-~~--~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  201 (355)
T d2bbkh_         142 KRMLDVPDCYHI-FP--TAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---------------EDEFLINHPA  201 (355)
T ss_dssp             EEEEECCSEEEE-EE--EET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCSC---------------TTSCBCSCCE
T ss_pred             eeEEecCCcceE-ee--cCC--cceEEEcCCCCEEEEEecCCCeEEEEecccccc---------------eecceeeecc
Confidence            988875443221 11  111  234555566666666554433322221111000               0011222334


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001224          588 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  651 (1120)
Q Consensus       588 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  651 (1120)
                      +.+++..++.++.++.+++|++..+..........+........+.|++...+..+.|+....+
T Consensus       202 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence            5555667889999999999999887643221111111122233344455444445555544444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=4.6e-16  Score=173.59  Aligned_cols=307  Identities=8%  Similarity=-0.065  Sum_probs=202.8

Q ss_pred             ceeEEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC----------CC
Q 001224          582 SLGVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DN  646 (1120)
Q Consensus       582 ~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg  646 (1120)
                      ++..++++|+++.++..     +..+.|.+||..+++.+..+..+.    ...++|+|||++|+++..          ++
T Consensus        22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccce
Confidence            34444445555555543     345679999999999999887443    346999999999998754          46


Q ss_pred             cEEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeec
Q 001224          647 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  726 (1120)
Q Consensus       647 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  726 (1120)
                      .|.+||..++ +....+..+....                                                    ..  
T Consensus        98 ~v~v~D~~t~-~~~~~~~~~~~~~----------------------------------------------------~~--  122 (373)
T d2madh_          98 YVEVFDPVTF-LPIADIELPDAPR----------------------------------------------------FD--  122 (373)
T ss_pred             EEEEEECCCC-cEEEEEecCCcce----------------------------------------------------eE--
Confidence            7888888776 3322221111100                                                    00  


Q ss_pred             cCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc--CceEEEeeecccccCCCCccccccCce
Q 001224          727 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQ  804 (1120)
Q Consensus       727 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~  804 (1120)
                                                   -......+.|+++++.++....  ++.+.+|+.                  
T Consensus       123 -----------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~------------------  155 (373)
T d2madh_         123 -----------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ------------------  155 (373)
T ss_pred             -----------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeec------------------
Confidence                                         0011234678888876655443  344555543                  


Q ss_pred             eecCCCCCcccccCCCCCCCCCccEEEEccCCCEEE-EEe-CCcEEEEEcCCCceeeeecCC------CCCeEEEEEecC
Q 001224          805 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQ  876 (1120)
Q Consensus       805 ~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~  876 (1120)
                          ..+....       +.....++.++|+++.++ +.+ |+++.+|+...+........+      ......+.+++ 
T Consensus       156 ----~~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (373)
T d2madh_         156 ----GGSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-  223 (373)
T ss_pred             ----cCCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-
Confidence                3333222       344567889999998765 444 899999999988776654322      22234455655 


Q ss_pred             CCcEEEEEeCCCcEEEEEeeccee--eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCC
Q 001224          877 DNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR  954 (1120)
Q Consensus       877 d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~  954 (1120)
                      ++. ++..+.++.+++|+..++..  ...+..+......+.+.|.+...+..+.|+....+-                  
T Consensus       224 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------------  284 (373)
T d2madh_         224 SGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL------------------  284 (373)
T ss_pred             Cce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe------------------
Confidence            554 44566789999999887653  344455666667777777777777777676543332                  


Q ss_pred             CCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcE--EEEEEcCCcEEEEEcC
Q 001224          955 TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAA 1031 (1120)
Q Consensus       955 ~~~~~~i~~~~fspdg~~la~-~~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~--l~s~~~Dg~v~iwd~~ 1031 (1120)
                                  ..++..++. ..++.+.+||..+++.+..+.   +...+.+++|||||+.  +++++.|++|+|||+.
T Consensus       285 ------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         285 ------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             ------------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence                        223333444 577899999999999988764   4667999999999984  4678899999999999


Q ss_pred             CcceeeeeC
Q 001224         1032 NLKLRCRIN 1040 (1120)
Q Consensus      1032 ~~~~~~~~~ 1040 (1120)
                      +++.+..+.
T Consensus       350 tg~~~~~~~  358 (373)
T d2madh_         350 AGDQDQSTV  358 (373)
T ss_pred             CCCEEEEEC
Confidence            999999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.7e-16  Score=173.88  Aligned_cols=287  Identities=10%  Similarity=0.107  Sum_probs=191.4

Q ss_pred             ceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEecc-CceEEEeeecccccCCCCccccc
Q 001224          722 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATAS  800 (1120)
Q Consensus       722 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~  800 (1120)
                      .+++++.+++|++|++.........+.+     .+...+..++|+|||++|++++. ++.|++|++.....         
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~---------   71 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---------   71 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---------
Confidence            4577788999999999864433333332     26678899999999999866554 79999998743211         


Q ss_pred             cCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeee--ecCCCCCeEEEEEecC
Q 001224          801 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQ  876 (1120)
Q Consensus       801 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~  876 (1120)
                                 .......  ..+...+..++|+|||+++++++  ++.|.+|+.........  ...+...+.++.++| 
T Consensus        72 -----------~~~~~~~--~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-  137 (333)
T d1ri6a_          72 -----------ALTFAAE--SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-  137 (333)
T ss_dssp             -----------CEEEEEE--EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-
T ss_pred             -----------cEEEeee--cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-
Confidence                       1000000  01445677899999999999987  57899998876554333  345667788999999 


Q ss_pred             CCcEEEEEe-CCCcEEEEEeecceeeE------eecccccceEEEEEccCCCEEEEEe-CCCCEEEEECCCcccccce--
Q 001224          877 DNNIIAIGM-DDSSIQIYNVRVDEVKS------KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNR--  946 (1120)
Q Consensus       877 d~~~lasg~-~dg~v~vwd~~~~~~~~------~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd~~~~~~~~~~--  946 (1120)
                      +++++++++ .+..|.+|+........      ....+......++|++++.+++... ..+...+|++.........  
T Consensus       138 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  217 (333)
T d1ri6a_         138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  217 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee
Confidence            777777666 45579999987643221      1123445568899999998876554 5567888887653322211  


Q ss_pred             eeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceeeeccc-cCCCCCCeeEEEECCCCcEEEEEEc-C
Q 001224          947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL-D 1022 (1120)
Q Consensus       947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~-D 1022 (1120)
                      .................+++++|++++++.  .++.+.+|++.......... ...+...+.+++|||||++|++++. +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             eeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            122222222222345678999999988874  56789999987654333222 1123566889999999999887765 5


Q ss_pred             CcEEEEE--cCCccee
Q 001224         1023 ATVCVFS--AANLKLR 1036 (1120)
Q Consensus      1023 g~v~iwd--~~~~~~~ 1036 (1120)
                      +.|+||+  ..+|++.
T Consensus       298 ~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         298 HHISVYEIVGEQGLLH  313 (333)
T ss_dssp             CEEEEEEEETTTTEEE
T ss_pred             CeEEEEEEECCCCcEE
Confidence            8899995  4677654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.5e-16  Score=171.28  Aligned_cols=285  Identities=11%  Similarity=0.139  Sum_probs=186.5

Q ss_pred             EEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEE
Q 001224          772 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISL  849 (1120)
Q Consensus       772 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~v  849 (1120)
                      +++++.++.|++|+++..                     +.+.....  ..+...+..++|+|||++|+++.  |+.|++
T Consensus         7 ~v~~~~~~~I~v~~~~~~---------------------~~l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE---------------------GALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT---------------------SCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCcEEEEEEcCC---------------------CCeEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence            466778899999998431                     11000000  12678899999999999997665  799999


Q ss_pred             EEcCCCceeeee---cCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEEeecceeeE--eecccccceEEEEEccCCCEE
Q 001224          850 FNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVL  923 (1120)
Q Consensus       850 wd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l  923 (1120)
                      |++.......++   ..+...+..++|+| ||++|++++. ++.|.+|+........  ....+...+.++.++||++++
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            999765433222   22345678899999 8888888774 6789999988765433  334567778899999999998


Q ss_pred             EEEeCC-CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceee----eccc
Q 001224          924 VSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV----KQWV  996 (1120)
Q Consensus       924 ~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~----~~~~  996 (1120)
                      ++++.+ ..+.+|+..................  .......++|++++.+++..  ..+...+|+.......    ....
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTV--EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECS--TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeee--cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence            877654 5689999877543322221111111  11245789999999998874  4567778876443211    1111


Q ss_pred             ----cCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEE
Q 001224          997 ----PRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1071 (1120)
Q Consensus       997 ----~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s 1071 (1120)
                          ..........+++++|+++++.+. .++.+.+|++........+.  ...+.+     ..+..++|+| ||++|++
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~p~~~a~sp-DGk~l~v  292 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE--GFQPTE-----TQPRGFNVDH-SGKYLIA  292 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE--EEEECS-----SSCCCEEECT-TSSEEEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE--EEeCCC-----CCeeEEEEeC-CCCEEEE
Confidence                112245677899999999876554 56789999987654433322  111111     2344799999 6888766


Q ss_pred             Ee-CCCcEEEEecCCCCCCC
Q 001224         1072 GL-SDGGVHVFEPLESEGKW 1090 (1120)
Q Consensus      1072 ~~-~Dg~v~vW~~~~~~~~~ 1090 (1120)
                      ++ .++.|.+|++....+.+
T Consensus       293 a~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         293 AGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ECTTTCEEEEEEEETTTTEE
T ss_pred             EECCCCeEEEEEEECCCCcE
Confidence            64 56899999876544333

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=6.4e-17  Score=179.20  Aligned_cols=201  Identities=9%  Similarity=-0.010  Sum_probs=126.3

Q ss_pred             ceEEEEEcCCCCeEEEEE-----CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEE--------ecCC
Q 001224          428 SVNRVIWSPDGSLFGVAY-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT--------CGDD  494 (1120)
Q Consensus       428 ~V~~l~~spdg~~las~~-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s--------~s~d  494 (1120)
                      ++...+.+|||+++++..     .+..|.+||..+++.+.   ++..+  .+..++|||||+.+++++        ++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            334446689999998764     45679999999998766   34444  344799999999744432        3457


Q ss_pred             CcEEEEECCCCceeEEeeccccC-------eEEEeeccCCCceEEEEE--ecCCeEEEEecCCCCCceeeeCCCCceeEE
Q 001224          495 KTIKVWDATNGAKQYIFEGHEAP-------VYSVCPHHKENIQFIFST--ALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  565 (1120)
Q Consensus       495 ~~i~vwd~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  565 (1120)
                      +.|++||+.+++.+..+..+...       ...++|+  +++.+++.+  +.+..+.+|+..+.+....+..+.....  
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  153 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI--  153 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE--
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEe--cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE--
Confidence            89999999999998887644332       2334564  445566555  4567899999987665554443321110  


Q ss_pred             EEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC
Q 001224          566 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  644 (1120)
Q Consensus       566 ~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  644 (1120)
                        .+          ......+.+++++..++.. ..++.+.+++..+...       .....+....+++++..++.++.
T Consensus       154 --~~----------~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T d2bbkh_         154 --FP----------TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------EDEFLINHPAYSQKAGRLVWPTY  214 (355)
T ss_dssp             --EE----------EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TTSCBCSCCEEETTTTEEEEEBT
T ss_pred             --ee----------cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------eecceeeeccccCCCCeEEEecC
Confidence              00          0122233444444444432 2344444444433321       12234566788888888999999


Q ss_pred             CCcEEEEEccCc
Q 001224          645 DNGIKILATSDG  656 (1120)
Q Consensus       645 dg~i~iwd~~~~  656 (1120)
                      ++.+++|+...+
T Consensus       215 ~~~~~v~~~~~~  226 (355)
T d2bbkh_         215 TGKIHQIDLSSG  226 (355)
T ss_dssp             TSEEEEEECTTS
T ss_pred             CCeEEEEecCCC
Confidence            999999998765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=1.3e-13  Score=158.70  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=94.2

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC--
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--  446 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~--  446 (1120)
                      .+.|.+|+++ +.  ..|+.|.+||+.+++....              +..+.+..|...|.++.|||||++||.++.  
T Consensus        21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            4679999984 55  3578999999999986532              112246678889999999999999998854  


Q ss_pred             -------CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee
Q 001224          447 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       447 -------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  512 (1120)
                             ++.+.|||+++++..    .+..|.+.+..+.|||||+.  +|.. .++.+.+|+..+++..+...
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~~--ia~~-~~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCS
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcce--eeEe-ecccceEEECCCCceeeeee
Confidence                   567899999998743    47789999999999999994  5554 46789999998887765443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.6e-13  Score=152.11  Aligned_cols=258  Identities=10%  Similarity=0.014  Sum_probs=166.2

Q ss_pred             ecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-----------CCcEEEEEcCCCceeeeecCCCC-------C
Q 001224          806 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------A  867 (1120)
Q Consensus       806 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~  867 (1120)
                      +|..+++.+....     ......++++|||++|++.+           |+.|++||..+++.+..+..+..       .
T Consensus        51 ~d~~~~~~~~~~~-----~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~  125 (368)
T d1mdah_          51 SCAGCGVTLGHSL-----GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EETTTTEEEEEEE-----ECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             EeCCCCcEEEEEe-----CCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCC
Confidence            3556666544321     11233689999999998754           45699999999998877654322       2


Q ss_pred             eEEEEEecCCCcEEEEEe-CCCcEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccce
Q 001224          868 ATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR  946 (1120)
Q Consensus       868 i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~  946 (1120)
                      ...++|+| ||++|+++. .++.+.+||+.+++.+..+..+.....   +......++..+.||++.+|++.........
T Consensus       126 p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         126 VHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             TTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             ccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            34689999 888887765 679999999999998888876554321   1122345666777888888877665432221


Q ss_pred             eeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCC----------CCCeeEEEECCCCcEE
Q 001224          947 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLV 1016 (1120)
Q Consensus       947 ~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l 1016 (1120)
                      ...  .........+....+.+++..+.. ..+.+.+++...+..........+          ......+++++++..+
T Consensus       202 ~~~--~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         202 VGA--QCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CCC--CSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eec--ccccccccceeecccccCcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence            111  111111134566777888765544 345566666655443322111111          1233458899999887


Q ss_pred             EEEEcC---------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC--EEEEEeCCCcEEEEecCC
Q 001224         1017 YACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN--EFALGLSDGGVHVFEPLE 1085 (1120)
Q Consensus      1017 ~s~~~D---------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~--~l~s~~~Dg~v~vW~~~~ 1085 (1120)
                      +....+         ..|.+||..+++.+..+.      .+     -.+.+++|+| |++  +++++..|+.|+|||..+
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~------~~-----~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------NG-----HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------EE-----EEECEEEECC-SSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEeEEec------CC-----CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCC
Confidence            765433         359999999999887765      11     1233799999 565  356777899999999999


Q ss_pred             CC
Q 001224         1086 SE 1087 (1120)
Q Consensus      1086 ~~ 1087 (1120)
                      ++
T Consensus       347 gk  348 (368)
T d1mdah_         347 DQ  348 (368)
T ss_dssp             CE
T ss_pred             CC
Confidence            98

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=6.5e-13  Score=147.09  Aligned_cols=270  Identities=10%  Similarity=-0.032  Sum_probs=173.1

Q ss_pred             CCCCceEEEEecCCCeEEEE--EeCCCc--EEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCC
Q 001224          363 QGSSPMSMDFHPVQQTLLLV--GTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  438 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~--g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  438 (1120)
                      +.+....++.+++++...++  ...+|+  |.+||..+++.+..                   ..++..+  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence            44555666778888853333  344454  67779999988764                   2333333  58999999


Q ss_pred             CeEEEEE----------CCCeEEEEEccCCceeeeeeeecc-----cccCeEEEEEcCCCCceEEEEecCCCcEEEEECC
Q 001224          439 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  503 (1120)
Q Consensus       439 ~~las~~----------~dg~v~iwd~~~~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~  503 (1120)
                      ++|++.+          .|+.|.+||..+++.+.... +..     .......++|+|||++ ++++...++.+.+||+.
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~-~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEET
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeeeec-CCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECC
Confidence            9999865          36789999999988765321 111     1122346899999996 33444568999999999


Q ss_pred             CCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeee------CCCCceeEEEEcCCCCeEEec
Q 001224          504 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE------APGRWCTTMAYSADGTRTYQG  577 (1120)
Q Consensus       504 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~~~~~  577 (1120)
                      +++.+..+..+......    +... ..++..+.||.+.+|++..........      .+...+....+.+++..++..
T Consensus       155 ~~~~~~~~~~~~~~~~~----~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         155 GASDDQLTKSASCFHIH----PGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             TTEEEEEEECSSCCCCE----EEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             CCcEeEEeeccCcceEc----cCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            99999888765543211    1222 356777788888888876654432211      111222333333433321111


Q ss_pred             c-------------------------------cccceeEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeEE
Q 001224          578 F-------------------------------RKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTS  617 (1120)
Q Consensus       578 ~-------------------------------~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~  617 (1120)
                      .                               .......+++++++..++....+         ..|.+||..+++.+..
T Consensus       230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~  309 (368)
T d1mdah_         230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP  309 (368)
T ss_dssp             SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC
T ss_pred             CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE
Confidence            0                               00112346778888877664322         3599999999998887


Q ss_pred             EecCCCCCCcCeEEEcCCCC-E-EEEEECCCcEEEEEccCcchhhhhcc
Q 001224          618 IDADGGLPASPRIRFNKDGC-L-LAVSTNDNGIKILATSDGIRLLRTFE  664 (1120)
Q Consensus       618 ~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~  664 (1120)
                      +....   .+.+++|+|||+ + ++++..++.|++||..++ +.++.+.
T Consensus       310 ~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         310 ISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             CEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             ecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence            76432   478899999997 3 456667899999999998 5555544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=8.2e-14  Score=151.86  Aligned_cols=248  Identities=10%  Similarity=-0.029  Sum_probs=154.2

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccC--------CCCccc-----ccccccCCCCceEEEEEcCCCCeEE
Q 001224          376 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG--------ACSMPL-----QAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       376 g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +-|.+++|+.+|.|.||++.+++.+.+.++  +...        ..+...     .......|........++|||++|.
T Consensus        10 e~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV--fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lf   87 (441)
T d1qnia2          10 EYYGFWSGGHQGEVRVLGVPSMRELMRIPV--FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF   87 (441)
T ss_dssp             SEEEEEECBTTCCEEEEEETTTEEEEEECS--SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEE
T ss_pred             CEEEEEeCCCCCcEEEEeCCCCcEEEEEEe--EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEE
Confidence            345688999999999999999998875432  2110        000000     0001223555677777889999997


Q ss_pred             EEE-CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCC-----------------cEEEEECCC
Q 001224          443 VAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----------------TIKVWDATN  504 (1120)
Q Consensus       443 s~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~-----------------~i~vwd~~~  504 (1120)
                      +.. .+.+|.++|+++++..+.. . -.+...+..++|+|||+..|++..+.+.                 .+..+|..+
T Consensus        88 V~d~~~~rVavIDl~t~k~~~ii-~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t  165 (441)
T d1qnia2          88 INDKANTRVARIRLDIMKTDKIT-H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET  165 (441)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE-E-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred             EEcCCCCEEEEEECCCCcEeeEE-e-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc
Confidence            764 6789999999998865422 2 2356789999999999986666555442                 235688888


Q ss_pred             CceeEEeeccccCeEEEeeccCCCceEEEEEecCC-eEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccce
Q 001224          505 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  583 (1120)
Q Consensus       505 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i  583 (1120)
                      .+....+.... ....+.++  ++|+++++.+.+. .+..++..+......+... .....+.                 
T Consensus       166 ~~v~~qI~v~~-~p~~v~~s--pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~-----------------  224 (441)
T d1qnia2         166 MDVAWQVIVDG-NLDNTDAD--YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAA-----------------  224 (441)
T ss_dssp             CSEEEEEEESS-CCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHH-----------------
T ss_pred             ceeeEEEecCC-CccceEEC--CCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEE-----------------
Confidence            88777665433 34556664  5557777776542 3322333222221111000 0011122                 


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEE-EECCCcEEEEEccCc
Q 001224          584 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG  656 (1120)
Q Consensus       584 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~  656 (1120)
                          +.|+|+++. .+.++.+.+++......+..+.....   ...+.++|||+++++ +..+++|.+||+.+.
T Consensus       225 ----~~~dGk~~~-v~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         225 ----AVKAGNFKT-IGDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             ----HHHTTCCBC-CTTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             ----EecCCCEEE-eCCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence                334444443 34567788888777777777765433   577999999998765 567899999998754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=6.4e-13  Score=144.72  Aligned_cols=316  Identities=10%  Similarity=0.065  Sum_probs=186.4

Q ss_pred             eEEEEecCCCcEEEEECCCCceeEEeec------------------------------cccCeEEEeeccCCCceEEEEE
Q 001224          486 LCVITCGDDKTIKVWDATNGAKQYIFEG------------------------------HEAPVYSVCPHHKENIQFIFST  535 (1120)
Q Consensus       486 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~~~l~s~  535 (1120)
                      ..++|++.+|.|+|||+.+++.++++..                              |......  ...++||++|+..
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~--t~gtpDGr~lfV~   89 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISM--TDGRYDGKYLFIN   89 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEE--ETTEEEEEEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcce--ecccCCCCEEEEE
Confidence            3688999999999999999998887632                              1111222  2234678888666


Q ss_pred             e-cCCeEEEEecCCCCCceeeeC-CCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001224          536 A-LDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  613 (1120)
Q Consensus       536 ~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  613 (1120)
                      . .+++|.++|+++.+....+.. ....+..++|+|+|+..+.......  .+.+..++..+..-.....+..+|..+.+
T Consensus        90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~--~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF--VIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS--CEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC--cccccCcccccccccccceEEeecCccce
Confidence            4 678999999999877666554 3567888899998874322111000  00011111000000001235668888888


Q ss_pred             eeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCc-EEEEEccCcchhhhhcccccccccccCCCCCCCcccchhhhHhhh
Q 001224          614 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  692 (1120)
Q Consensus       614 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1120)
                      ....+...+.   ...+.|+|+|+++++.+.+.. +..++..+. ...                                
T Consensus       168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~--------------------------------  211 (441)
T d1qnia2         168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR--------------------------------  211 (441)
T ss_dssp             EEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB--------------------------------
T ss_pred             eeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCc-ceE--------------------------------
Confidence            8777765543   678999999999998876532 111111111 000                                


Q ss_pred             hccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceE
Q 001224          693 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  772 (1120)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  772 (1120)
                                                           ..+.+.+..                      ..+.++++|+++
T Consensus       212 -------------------------------------d~i~v~n~p----------------------~~~~~~~dGk~~  232 (441)
T d1qnia2         212 -------------------------------------DWVVVFNVE----------------------RIAAAVKAGNFK  232 (441)
T ss_dssp             -------------------------------------CEEEEEEHH----------------------HHHHHHHTTCCB
T ss_pred             -------------------------------------EEEEeCCcc----------------------ceEEEecCCCEE
Confidence                                                 011111110                      012234555543


Q ss_pred             EEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe--CCcEEEE
Q 001224          773 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLF  850 (1120)
Q Consensus       773 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s--dg~i~vw  850 (1120)
                      .. +.++.+.++..                      .....+.. ++   -......++++|||+++++++  +++|.+|
T Consensus       233 ~v-~~~~v~vvd~~----------------------~~~~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~  285 (441)
T d1qnia2         233 TI-GDSKVPVVDGR----------------------GESEFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVI  285 (441)
T ss_dssp             CC-TTCCCCEEECS----------------------SSCSSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred             Ee-CCCCcEEEEcc----------------------cCCceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEE
Confidence            32 22334433322                      11111111 11   123356799999999988765  8999999


Q ss_pred             EcCCCcee--------eeecC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecc----------eeeEee-----
Q 001224          851 NMMTFKTM--------ATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----------EVKSKL-----  904 (1120)
Q Consensus       851 d~~~~~~~--------~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----------~~~~~l-----  904 (1120)
                      |+.+....        ..+.+   ..-.....+|++ ++..+.+.+.|..|..|++...          ..+..+     
T Consensus       286 d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~  364 (441)
T d1qnia2         286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ  364 (441)
T ss_dssp             EGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred             EeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence            98653211        11111   112346678999 8889999999999999998521          233333     


Q ss_pred             cccccceEEEEEccCCCEEEEEeC
Q 001224          905 KGHSKRITGLAFSHALNVLVSSGA  928 (1120)
Q Consensus       905 ~~h~~~V~~l~~s~d~~~l~s~s~  928 (1120)
                      .||...+.+.+++|||++|++++.
T Consensus       365 ~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         365 PGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CCCCccccccccCCCCcEEEecCc
Confidence            578888888999999999999954

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=1.2e-11  Score=141.75  Aligned_cols=303  Identities=8%  Similarity=0.020  Sum_probs=160.8

Q ss_pred             ccccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccC
Q 001224          756 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  835 (1120)
Q Consensus       756 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d  835 (1120)
                      +...|.++.|||||++|+.++..  .++|....           ...+.+||..++....  +..  +...+..+.||||
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~--~~~~r~s~-----------~~~~~l~d~~~~~~~~--l~~--~~~~~~~~~~SPD  122 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNY--VKQWRHSY-----------TASYDIYDLNKRQLIT--EER--IPNNTQWVTWSPV  122 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEE--EECSSSCE-----------EEEEEEEETTTTEECC--SSC--CCTTEEEEEECSS
T ss_pred             ccCccceeEECCCCCEEEEEECC--cceeeecc-----------CceEEEEECCCCcccc--ccc--CCccccccccccC
Confidence            44567889999999999887642  22221100           0112345556665433  222  7788999999999


Q ss_pred             CCEEEEEeCCcEEEEEcCCCceeeeecCC------------------CCCeEEEEEecCCCcEEEEEeCCCc-EEEEEe-
Q 001224          836 DSYVMSASGGKISLFNMMTFKTMATFMPP------------------PPAATFLAFHPQDNNIIAIGMDDSS-IQIYNV-  895 (1120)
Q Consensus       836 ~~~l~~~sdg~i~vwd~~~~~~~~~~~~~------------------~~~i~~l~~sp~d~~~lasg~~dg~-v~vwd~-  895 (1120)
                      |+++|...++.+++|+..+++..+....+                  .+....+.||| ||+.||....|.. |..|.+ 
T Consensus       123 G~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             TTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEE
T ss_pred             cceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEEEE
Confidence            99999999999999999988766543322                  22345688999 8999988765432 444433 


Q ss_pred             ----------------------------------ecceeeEee-----------cccccceEEEEEccCCCEEEEE-eCC
Q 001224          896 ----------------------------------RVDEVKSKL-----------KGHSKRITGLAFSHALNVLVSS-GAD  929 (1120)
Q Consensus       896 ----------------------------------~~~~~~~~l-----------~~h~~~V~~l~~s~d~~~l~s~-s~D  929 (1120)
                                                        .+++.....           ......+..+.|.+++..++.. ...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~  281 (470)
T d2bgra1         202 FYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI  281 (470)
T ss_dssp             ECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS
T ss_pred             eeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeecc
Confidence                                              222111110           0112335678888888766543 222


Q ss_pred             C---CEEEEEC--CCcccccce---eeeccCCCCCCCCCCcEEEEccCCc--EEEEE-eCCe--EEEEEcCCceeeeccc
Q 001224          930 S---QLCVWSS--DGWEKQKNR---FLQIPTGRTPTAQSDTRVQFHQDQI--HFLVV-HETQ--LAIFETTKLECVKQWV  996 (1120)
Q Consensus       930 g---~v~iWd~--~~~~~~~~~---~~~~~~~~~~~~~~i~~~~fspdg~--~la~~-~d~~--v~i~d~~~~~~~~~~~  996 (1120)
                      +   .+.++++  .++......   ...................+++++.  ++..+ .++.  |.+|+...+..... .
T Consensus       282 ~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~l-t  360 (470)
T d2bgra1         282 QNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI-T  360 (470)
T ss_dssp             TTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEES-C
T ss_pred             CCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeee-c
Confidence            2   2344444  333221110   0010100000000112234444443  33333 5554  55556554444332 2


Q ss_pred             cCCCCCCeeEEEECCCCcEE-EEEEcCC----c--EEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEE
Q 001224          997 PRESSAPITHATFSCDSQLV-YACFLDA----T--VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1069 (1120)
Q Consensus       997 ~~~h~~~v~~l~~s~dg~~l-~s~~~Dg----~--v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l 1069 (1120)
                        .+...|..+ +++|++.+ ++++.++    .  |+-.++..+.....+..  .+. +| ...+.  +++||| ||+++
T Consensus       361 --~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~--~~~-~~-~~~~~--s~~fSp-dgky~  430 (470)
T d2bgra1         361 --KGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSC--ELN-PE-RCQYY--SVSFSK-EAKYY  430 (470)
T ss_dssp             --CSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESST--TTS-TT-TBCBE--EEEECT-TSSEE
T ss_pred             --cCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecc--ccc-CC-CCCEE--EEEECC-CCCEE
Confidence              235567766 44455544 3443332    2  33335555444444431  111 11 22355  899999 68887


Q ss_pred             E---EEeCCCcEEEEecCCCC
Q 001224         1070 A---LGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1070 ~---s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      +   +|...-.+.+|+..+++
T Consensus       431 ~~~~s~~~~P~~~l~~~~~g~  451 (470)
T d2bgra1         431 QLRCSGPGLPLYTLHSSVNDK  451 (470)
T ss_dssp             EEEECSBSSCEEEEEETTTTE
T ss_pred             EEEecCCCCCeEEEEECCCCC
Confidence            6   33334468899988876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=3.6e-10  Score=123.50  Aligned_cols=255  Identities=9%  Similarity=0.068  Sum_probs=151.1

Q ss_pred             CCCCccEEEEccCCCEEEEEeCCcEEEEEcCCC-ceeeee-cCCCCCeEEEEEecCCCcE--EEEEe-CCCcEEEEEeec
Q 001224          823 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTF-KTMATF-MPPPPAATFLAFHPQDNNI--IAIGM-DDSSIQIYNVRV  897 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~-~~~~~~-~~~~~~i~~l~~sp~d~~~--lasg~-~dg~v~vwd~~~  897 (1120)
                      ....+..|+++++++++.+...+.+..|.+... ...... .........+++++ +++.  ++++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            455577899999999999888778888877532 222111 11233456778888 6663  33322 245665554421


Q ss_pred             -cee---------------eEe-ecccccceEEEEEccCCCEEEEEeC-CCCEEEEECCCccccc-ceeeeccCCCCCCC
Q 001224          898 -DEV---------------KSK-LKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPTGRTPTA  958 (1120)
Q Consensus       898 -~~~---------------~~~-l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~iWd~~~~~~~~-~~~~~~~~~~~~~~  958 (1120)
                       +..               ... -......+.++.|+|||++|++++. ...|.+|++....... .........    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence             100               000 1112234779999999998887764 3468888765432211 111111111    1


Q ss_pred             CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceeeecc-----cc------------CCCCCCeeEEEECCCCcEEEEE
Q 001224          959 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQW-----VP------------RESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus       959 ~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~~~~-----~~------------~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
                      ...+.++|+|+|+++.+.  .++.|.+|++.........     ..            ..+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            356899999999998874  5689999998765422111     00            0112345689999999999877


Q ss_pred             Ec-C-----CcEEEEEcCCcceeee-eCCCcccCCCCCCCCccceEEEecCCCCCEEEEE-eCCCcEEEEecCCCC
Q 001224         1020 FL-D-----ATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1020 ~~-D-----g~v~iwd~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~-~~Dg~v~vW~~~~~~ 1087 (1120)
                      .. +     +.|..|++.....+.. .........|     ..+..++++|.+|++|+++ ..++.|.||++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            53 1     2377788765332221 1111111222     3344799998668876555 677999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=1.6e-08  Score=107.10  Aligned_cols=248  Identities=14%  Similarity=0.080  Sum_probs=162.8

Q ss_pred             CCCCcceeeeccCCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceE
Q 001224          351 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  430 (1120)
Q Consensus       351 ~~~~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  430 (1120)
                      +..+.++...+.....+..++++|||+ |+++...+++|..|+.......                     +......+.
T Consensus        14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~   71 (302)
T d2p4oa1          14 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVS   71 (302)
T ss_dssp             CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEE
T ss_pred             cCCcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcc
Confidence            334556667777667899999999999 7889888999999986643222                     223456899


Q ss_pred             EEEEcCCCCeEEEEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEE
Q 001224          431 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  510 (1120)
Q Consensus       431 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~  510 (1120)
                      +++|++||+++++...++.+.+|+............-.......+.+++.+++.  ++++.+.++.+..+|...+.....
T Consensus        72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence            999999999999998888888888765432211111123445689999999998  788888889999999887754332


Q ss_pred             eec----------cccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          511 FEG----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       511 ~~~----------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ...          .......+.+  +. +.++++.+..+.|..++...........     +..              ..
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~--------------~~  207 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE-----IFV--------------EQ  207 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCE-----EEE--------------ES
T ss_pred             ecCCccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccc-----ccc--------------CC
Confidence            221          1122344443  23 2466666778888888776543221100     000              00


Q ss_pred             cceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEE---cCCCCEEEEEECC
Q 001224          581 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND  645 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  645 (1120)
                      .....++++++|+.+++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       208 ~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         208 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            122336777777777777788999999875 443333333333345788999   6788888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.03  E-value=3.5e-07  Score=99.22  Aligned_cols=160  Identities=13%  Similarity=0.146  Sum_probs=100.8

Q ss_pred             CccEEEEccCCCEEEEEe--CCcEEEEEcCCC-cee--eee--cCCCCCeEEEEEecCCCcEEE-EEeCCCcEEEEEeec
Q 001224          826 AVPCFALSKNDSYVMSAS--GGKISLFNMMTF-KTM--ATF--MPPPPAATFLAFHPQDNNIIA-IGMDDSSIQIYNVRV  897 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~-~~~--~~~--~~~~~~i~~l~~sp~d~~~la-sg~~dg~v~vwd~~~  897 (1120)
                      .+.+++|+|||+++++++  .+.|.+|+.... ...  ...  .........++|+| +++++. +...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            367899999999888887  456888876532 221  111  22345789999999 777664 455678999999876


Q ss_pred             ceeeEe-----ec--------------ccccceEEEEEccCCCEEEEEeC-C-----CCEEEEECCCcccccc-eeeecc
Q 001224          898 DEVKSK-----LK--------------GHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKN-RFLQIP  951 (1120)
Q Consensus       898 ~~~~~~-----l~--------------~h~~~V~~l~~s~d~~~l~s~s~-D-----g~v~iWd~~~~~~~~~-~~~~~~  951 (1120)
                      ++....     +.              .+......+.++|||++|+++.. +     +.|..|++........ ..+...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            532211     10              12223567899999999987643 2     2377777665322111 111111


Q ss_pred             CCCCCCCCCCcEEEEcc-CCcEEEEE--eCCeEEEEEcCCc
Q 001224          952 TGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKL  989 (1120)
Q Consensus       952 ~~~~~~~~~i~~~~fsp-dg~~la~~--~d~~v~i~d~~~~  989 (1120)
                      ...   ......++|+| +|++|+++  .++.|.+|++...
T Consensus       305 ~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            111   12347899998 89988885  6789999987644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=5.6e-08  Score=102.75  Aligned_cols=236  Identities=9%  Similarity=0.024  Sum_probs=151.1

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eE
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KS  902 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~  902 (1120)
                      ..+..++++|||+++++.. +++|+.|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3578899999999988877 78898888653 3 233444567899999999 889999988889999988765321 12


Q ss_pred             ee--cccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeec--cCCCCCCCCCCcEEEEccCCcEEEE--E
Q 001224          903 KL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQDQIHFLV--V  976 (1120)
Q Consensus       903 ~l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~fspdg~~la~--~  976 (1120)
                      .+  .........+++.++++++++.+.++.+..++...+..........  .............+.++  +..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            22  2244567899999999999998888888888877754221111000  00011111123344444  444444  4


Q ss_pred             eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccc
Q 001224          977 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1056 (1120)
Q Consensus       977 ~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 1056 (1120)
                      ..+.|..++..............+......++|++||+++++...++.|..++... +......    ..    .....+
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~----~~----~~~~~p  253 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ----AE----QGVIGS  253 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC----GG----GTCTTE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe----cC----CCCCCc
Confidence            67788888876654332221111234567899999999888888889999997654 3322222    11    111346


Q ss_pred             eEEEec---CCCCCEEEEEeCC
Q 001224         1057 LVIAAH---PQEPNEFALGLSD 1075 (1120)
Q Consensus      1057 ~~i~~~---p~d~~~l~s~~~D 1075 (1120)
                      .+++|.   + |++.|.+++..
T Consensus       254 t~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTT-TTTEEEEEECT
T ss_pred             eEEEEcCCCC-CCCEEEEECCC
Confidence            689994   4 67777766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=2.2e-07  Score=96.72  Aligned_cols=246  Identities=13%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             ccEEEEEEcCCCceEEEeccCceEEEeeecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCC
Q 001224          758 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  837 (1120)
Q Consensus       758 ~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~  837 (1120)
                      .....++++++|+.+++-..+..|++|+.+       +..+..     +. ..+.       ..+.......+++..+..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~-----~~-~~~~-------~~~~~~~p~~~~~~~~~~   82 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQ-----FG-ECGK-------RDSQLLYPNRVAVVRNSG   82 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEE-----EC-CBSS-------STTCBSSEEEEEEETTTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEE-----ec-ccCC-------Cccccccccccccccccc
Confidence            356789999999977776777888888742       211110     00 0000       001222344566555543


Q ss_pred             -EEEEEe--CCcEEEEEcCCCceeeeec-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEee--cccccce
Q 001224          838 -YVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRI  911 (1120)
Q Consensus       838 -~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~~~V  911 (1120)
                       ++++..  ++.|..++.. +.....+. ........+++.+ +++++++....+.+.+++. +++.+..+  ..+....
T Consensus        83 ~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_          83 DIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             EEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred             ccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeeccccccccccc
Confidence             444433  4678888764 55555553 2345678999998 8888887777778888874 45656655  3466678


Q ss_pred             EEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc
Q 001224          912 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL  989 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~  989 (1120)
                      ..+++.+++..+++....+.|.+||.....      +.... ..........+++.++|+.+++-  .+..|.+|+. +|
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~------~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G  231 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQY------LRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG  231 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTCCE------EEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred             ceeeeccceeEEeeeccccceeeeecCCce------eeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CC
Confidence            899999999999998889999999976521      11111 11112346889999999987773  3457999985 57


Q ss_pred             eeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcce
Q 001224          990 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1035 (1120)
Q Consensus       990 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~ 1035 (1120)
                      +.+..+...........|++.+||.+++ ++.+..|++|......+
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            7777765544456789999999997655 56789999999877644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1e-06  Score=98.48  Aligned_cols=377  Identities=11%  Similarity=0.098  Sum_probs=194.3

Q ss_pred             EEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC----
Q 001224          371 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS----  446 (1120)
Q Consensus       371 ~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----  446 (1120)
                      .|.+++.+ +. -..+|.|.+||+.+++.....     +.           ..-..-.+....|||||++++....    
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~-----~~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLI-----EG-----------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEE-----CT-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEE-----cC-----------ccccccccceeEECCCCCeEEEEEcccce
Confidence            47788874 33 355789999999988653210     00           0112235778899999999988743    


Q ss_pred             -----CCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEee-ccccCe--
Q 001224          447 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPV--  518 (1120)
Q Consensus       447 -----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v--  518 (1120)
                           .+.+.++|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                 5678999999887432 2222334456778999999996  33332 5678888887776654432 222222  


Q ss_pred             ---------------EEEeeccCCCceEEEEEec-CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccc
Q 001224          519 ---------------YSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  582 (1120)
Q Consensus       519 ---------------~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~  582 (1120)
                                     .++-|  ++||++|+.... +..|..+.+.....     .....+..+.+..-|.          
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~----------  223 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGS----------  223 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTS----------
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCC----------
Confidence                           23334  566677776653 33344443321100     0001112222211111          


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEEC-C---CcEEEEEcc
Q 001224          583 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN-D---NGIKILATS  654 (1120)
Q Consensus       583 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d---g~i~iwd~~  654 (1120)
                                 .    .....+.++|+.++..........    ....+..+.|++++++++.... +   ..+.++|..
T Consensus       224 -----------~----np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~  288 (465)
T d1xfda1         224 -----------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (465)
T ss_dssp             -----------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             -----------C----CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence                       0    011247778887665433222111    1113567899999987665433 2   256777887


Q ss_pred             CcchhhhhcccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCcccccCCCccee---eccCCCc
Q 001224          655 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI---TEESNDK  731 (1120)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~d~~  731 (1120)
                      ++ .....+.....                                    .+.........+.++++.++   ....+|.
T Consensus       289 tg-~~~~~~~e~~~------------------------------------~wv~~~~~~p~~~~dg~~~~fi~~se~~g~  331 (465)
T d1xfda1         289 TG-VCTKKHEDESE------------------------------------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (465)
T ss_dssp             TC-CEEEEEEEECS------------------------------------SCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CC-cEEEEEEEcCC------------------------------------ceEeccCCceeEccCCCeeEEEEeeeeccc
Confidence            77 32222221110                                    01111123344566666543   2223333


Q ss_pred             ceeeec--ccC---CCCccceeeccCCccccccEEE-EEEcCCCceEEEec-cC--ceEEEeeecccccCCCCccccccC
Q 001224          732 SKVWKL--TEL---SEPNQCRSLRLPENLRATKISR-LIFTNSGNAILALA-SN--AIHLLWKWQRTERNSSGKATASVA  802 (1120)
Q Consensus       732 i~vw~~--~~~---~~~~~~~~~~~~~~~~~~~i~~-l~~s~~g~~l~~~~-~d--g~i~vw~~~~~~~~~~~~~~~~~~  802 (1120)
                      -.+|.+  ...   ......+.++    ...-.|.. +.++.+++.|...+ .+  +.-.+|.+..              
T Consensus       332 ~~ly~~~~~~~~~~~~~~~~~~LT----~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l--------------  393 (465)
T d1xfda1         332 GKFYHITVSSSQPNSSNDNIQSIT----SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--------------  393 (465)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSC----CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--------------
T ss_pred             CceEEEEeccccccCCCceeEEec----cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC--------------
Confidence            333322  211   1111222222    12334444 36888877665433 32  3344555421              


Q ss_pred             ceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEeC----CcEEEEEcCCCceeeeec
Q 001224          803 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG----GKISLFNMMTFKTMATFM  862 (1120)
Q Consensus       803 ~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~sd----g~i~vwd~~~~~~~~~~~  862 (1120)
                         ......+++...+   .......++.|||++++++....    -.+.+++..+++.+..+.
T Consensus       394 ---~g~~~~~~lt~~~---~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         394 ---VGNFNRQCLSCDL---VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             ---STTCCCBCSSTTS---SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             ---CCCCcceeecccc---CCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence               1111111222111   13445679999999999996653    347888888888777664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=2.2e-07  Score=95.58  Aligned_cols=240  Identities=10%  Similarity=0.041  Sum_probs=153.2

Q ss_pred             CCCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001224          823 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  900 (1120)
Q Consensus       823 ~~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  900 (1120)
                      +......++++++|...++..  .+.+..++...................+++++ +++++++....+.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445578999999999766654  46777777654333222222233467899999 888888777777777766554444


Q ss_pred             eEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeCC
Q 001224          901 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  979 (1120)
Q Consensus       901 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d~  979 (1120)
                      +....+ .....++++.++++++++-..+..+..++......    ......+.    .....++++++|+++++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            433332 34578999999999888776667677777655321    11111111    24578999999998777 4677


Q ss_pred             eEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEE
Q 001224          980 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1059 (1120)
Q Consensus       980 ~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i 1059 (1120)
                      .|..++...........  ........|++.++|.++++....+.|..++........ +.      .   ...-.|..+
T Consensus       162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-~~------~---~~~~~P~~i  229 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------F---TGLNTPLAV  229 (260)
T ss_dssp             EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-CC------C---CSCCCEEEE
T ss_pred             cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-Ec------c---CCCCCeEEE
Confidence            89999987654433221  335667899999999988888778888888766543221 11      0   111245689


Q ss_pred             EecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1060 AAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1060 ~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ++++ +++++++-..++.|+  .+.+-+
T Consensus       230 ~~d~-~g~l~vad~~~~rI~--~i~~~~  254 (260)
T d1rwia_         230 AVDS-DRTVYVADRGNDRVV--KLTSLE  254 (260)
T ss_dssp             EECT-TCCEEEEEGGGTEEE--EECCCG
T ss_pred             EEeC-CCCEEEEECCCCEEE--EEeCCC
Confidence            9998 578777766666544  444433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.5e-07  Score=103.68  Aligned_cols=361  Identities=11%  Similarity=0.026  Sum_probs=186.1

Q ss_pred             ecCCeEEEEecCCCCCceeeeCC---CCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE---------eCCCe
Q 001224          536 ALDGKIKAWLYDNLGSRVDYEAP---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA---------GDDFS  603 (1120)
Q Consensus       536 ~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~---------~~dg~  603 (1120)
                      ..+|.|.+||+.+.+....+...   ...+....+||||                     ++++..         +..+.
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~---------------------~~vl~~~~~~~~~r~s~~~~   92 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR---------------------EYALFSYNVEPIYQHSYTGY   92 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS---------------------SEEEEEESCCCCSSSCCCSE
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC---------------------CeEEEEEcccceeEeecccc
Confidence            45678889988876654333221   1133344455555                     455443         33578


Q ss_pred             EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCcchhhhhcc-cccccccccCCCCCCCcc
Q 001224          604 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS  682 (1120)
Q Consensus       604 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  682 (1120)
                      +.++|+.++..............+....|||||+.+|-.. ++.|.+.+..++. ..+... +...              
T Consensus        93 ~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~~--------------  156 (465)
T d1xfda1          93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKEG--------------  156 (465)
T ss_dssp             EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBTT--------------
T ss_pred             EEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCcc--------------
Confidence            9999999887654433333334566789999999998776 4667777665542 111110 0000              


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCcccccCCCcceeeccCCCcceeeecccCCCCccceeeccCCccccccEEE
Q 001224          683 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  762 (1120)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~  762 (1120)
                                                             .+..|-.     -|-..+               .-...-.+
T Consensus       157 ---------------------------------------~i~nG~~-----d~vyee---------------e~~~~~~a  177 (465)
T d1xfda1         157 ---------------------------------------VIYNGLS-----DWLYEE---------------EILKTHIA  177 (465)
T ss_dssp             ---------------------------------------TEEEEEC-----CHHHHH---------------TTSSSSEE
T ss_pred             ---------------------------------------eeecccc-----chhhhh---------------hhccccce
Confidence                                                   0000000     000000               00011135


Q ss_pred             EEEcCCCceEEEeccC-ceEEEeeeccc--c---------cCCCCccccccCceeecCCCCCcccccCCCC---CCCCCc
Q 001224          763 LIFTNSGNAILALASN-AIHLLWKWQRT--E---------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---NPEEAV  827 (1120)
Q Consensus       763 l~~s~~g~~l~~~~~d-g~i~vw~~~~~--~---------~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~---~~~~~v  827 (1120)
                      +.|||||+.|+....| ..+..+.+...  .         ....+.......+.+++..++..........   ....-+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            6677777777766543 44444443211  0         1111222222344566665554322111110   122236


Q ss_pred             cEEEEccCCCEEEEEeC-----CcEEEEEcCCCceeeeecCCC-C----CeEEEEEecCCCcEEE---EEeCCC--cEEE
Q 001224          828 PCFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPPP-P----AATFLAFHPQDNNIIA---IGMDDS--SIQI  892 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~sd-----g~i~vwd~~~~~~~~~~~~~~-~----~i~~l~~sp~d~~~la---sg~~dg--~v~v  892 (1120)
                      ..+.|++++++++...+     ..|.++|..++++...+.... .    .-....|++ ||+.++   ....+|  .++.
T Consensus       258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEE
T ss_pred             eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEE
Confidence            77899999987776542     248889999887765443221 1    123467889 665332   222333  4444


Q ss_pred             EEee------cceeeEeecccccceEEE-EEccCCCEEE-EEeCCC--CEEEEECCCcccccceeeeccCCCCCCCCCCc
Q 001224          893 YNVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  962 (1120)
Q Consensus       893 wd~~------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~s~Dg--~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~  962 (1120)
                      .++.      .++.+..+....-.|..+ +|..+++.|. ++..++  .-.+|.+.........++......   .....
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~---~~~~~  413 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE---NCTYF  413 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS---SCCCC
T ss_pred             EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC---CCCEE
Confidence            4433      233445555445556665 6888877764 444432  334565543221112233221111   13567


Q ss_pred             EEEEccCCcEEEEEeC----CeEEEEEcCCceeeeccc
Q 001224          963 RVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV  996 (1120)
Q Consensus       963 ~~~fspdg~~la~~~d----~~v~i~d~~~~~~~~~~~  996 (1120)
                      .+.|||+|++++....    -.+.+++..+++.+..+.
T Consensus       414 ~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         414 SASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            9999999999987422    246677777776666553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=2.4e-07  Score=96.00  Aligned_cols=229  Identities=12%  Similarity=0.063  Sum_probs=134.5

Q ss_pred             CcceeeeccCCCCceEEEEecCCCeEEEEEeCCC--cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEE
Q 001224          354 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  431 (1120)
Q Consensus       354 ~~~~~~~~~h~~~v~~v~~spdg~~lla~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  431 (1120)
                      ..+...+..+...+..-+|||||++|+.+....+  .+.+.+..++....                    +..+.+.+..
T Consensus        28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~   87 (269)
T d2hqsa1          28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGA   87 (269)
T ss_dssp             SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEE
T ss_pred             CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeeccccc
Confidence            3445566677888999999999998666655544  35555665554432                    4557788999


Q ss_pred             EEEcCCCCeEEEEECC-CeEEEE--EccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCc--EEEEECCCCc
Q 001224          432 VIWSPDGSLFGVAYSR-HIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGA  506 (1120)
Q Consensus       432 l~~spdg~~las~~~d-g~v~iw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~--i~vwd~~~~~  506 (1120)
                      ..|||||+.++..... +...++  ........    ....+........+++++.. .+++...++.  |.+.++..+.
T Consensus        88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----ECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSC
T ss_pred             ceecCCCCeeeEeeecCCccceeecccccccce----eeeecccccccccccccccc-ceecccccCCceEeeeeccccc
Confidence            9999999999986543 333333  33332211    23334555666778888886 4555555554  5555655554


Q ss_pred             eeEEeeccccCeEEEeeccCCCceEEEEEec-CCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeE
Q 001224          507 KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  585 (1120)
Q Consensus       507 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~  585 (1120)
                      . ..+..+........|++  ++..++..+. .+...+|......................|+|||+             
T Consensus       163 ~-~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~-------------  226 (269)
T d2hqsa1         163 P-QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT-------------  226 (269)
T ss_dssp             C-EECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS-------------
T ss_pred             c-eeeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC-------------
Confidence            3 33333445555556644  4456655544 45555665554443333333334444555666665             


Q ss_pred             EEEcCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcC
Q 001224          586 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  634 (1120)
Q Consensus       586 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  634 (1120)
                              .|+-.+   ....|++++++.+.... +....  ..+...+|||
T Consensus       227 --------~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP  267 (269)
T d2hqsa1         227 --------MVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP  267 (269)
T ss_dssp             --------EEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred             --------EEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence                    454333   34568999998766543 33222  2466788887

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.87  E-value=1.1e-06  Score=92.56  Aligned_cols=257  Identities=14%  Similarity=0.083  Sum_probs=154.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEeC-------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEc
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  435 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  435 (1120)
                      .-.....++|.|+|+. +++...       +|+|..||..+++.......               ....-.+.-..++|.
T Consensus        16 ~~~g~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~   79 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCTTCEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred             CCCCCeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence            3455678899999994 544322       46799999988765431000               011111235789999


Q ss_pred             CCCCeEEEEECCCeEEEEEccCCceeeeeeeecccc-cCeEEEEEcCCCCceEEEEecC---------------CCcEEE
Q 001224          436 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKV  499 (1120)
Q Consensus       436 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~s~---------------d~~i~v  499 (1120)
                      ++|+.|+++...+.|...+.+++..........+.. ...+.+++.++|.  +.++-..               +|.|..
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~  157 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence            999988888877788889987764322111111111 1367899999998  5555321               233444


Q ss_pred             EECCCCceeEEeeccccCeEEEeeccCCCc---eEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEe
Q 001224          500 WDATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  576 (1120)
Q Consensus       500 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  576 (1120)
                      ++. .++...... ....-..++|+++.++   .+.++-+..+.|..||+.........        .+....      .
T Consensus       158 ~~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~~------~  221 (314)
T d1pjxa_         158 FTT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGHI------P  221 (314)
T ss_dssp             ECT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEEC------C
T ss_pred             Eee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEEc------c
Confidence            442 344333322 2333456777765543   23444566788888877643322110        000000      0


Q ss_pred             cccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccC
Q 001224          577 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSD  655 (1120)
Q Consensus       577 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~  655 (1120)
                      +........++++.+|+..++....+.|.+||.+.++.+..+....  ....+++|.||++.| ++.+.+|.|...++..
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            0011123457788888888888888999999999888777766443  257889999999855 4455678888777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=8.5e-07  Score=92.11  Aligned_cols=241  Identities=12%  Similarity=0.121  Sum_probs=162.4

Q ss_pred             CccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCC------CCCeEEEEEecCCCcEEEEE-eCCCcEEEEEeec
Q 001224          826 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRV  897 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~  897 (1120)
                      ....++++++|+.+++-. ++.|++||.+ ++.+..+...      ......+++..+.+.++++. +.++.|.+++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            467899999999777755 6889999965 6666655321      12345677766445555543 34456777764 4


Q ss_pred             ceeeEeec-ccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE
Q 001224          898 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  976 (1120)
Q Consensus       898 ~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~  976 (1120)
                      ++....+. .......++++.++|.++++....+.+.+++.+...      +...... ........+++.++|..+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~------~~~~g~~-~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV------LHKFGCS-KHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE------EEEEECT-TTCSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce------eeccccc-ccccccceeeeccceeEEeee
Confidence            55555553 345667889999999988887777878888765421      1111111 112356788999999887774


Q ss_pred             -eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEc-CCcEEEEEcCCcceeeeeCCCcccCCCCCCCCc
Q 001224          977 -HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1054 (1120)
Q Consensus       977 -~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 1054 (1120)
                       ..+.|++||.. ++.+..+...++......|++.++|+.+++-.. ++.|.+|+ .+|+++..+....        ...
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA  244 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence             67899999975 566666654455667899999999997776543 45799998 5688776664111        112


Q ss_pred             cceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1055 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1055 ~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      .+..++..| |+. |++++.++.|++|+.....
T Consensus       245 ~p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         245 QCFDVALMD-DGS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred             CEeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence            355788998 565 4556689999999987754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.86  E-value=2.3e-07  Score=95.36  Aligned_cols=241  Identities=9%  Similarity=0.030  Sum_probs=146.7

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      +......|+++++|..+++..+..+.|..++.........                  ...+ ......++++++|++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence            4456789999999995454455667788777665433221                  0111 22457789999999888


Q ss_pred             EEECCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEe
Q 001224          443 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  522 (1120)
Q Consensus       443 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  522 (1120)
                      +....+.+++++-.++..+.   .. .......++++.++++  ++++-.....+..++............-......++
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence            77777777776655544332   22 2235678999999998  566666667777777554433222112223445677


Q ss_pred             eccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCCC
Q 001224          523 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  602 (1120)
Q Consensus       523 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  602 (1120)
                      +.  +++..+++...++.|..++.+..............                     ...++++++|+.+++....+
T Consensus       147 ~~--~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~---------------------p~gi~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         147 VD--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA---------------------PWGIAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             EC--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS---------------------EEEEEECTTCCEEEEETTTT
T ss_pred             ec--CCCCEeeeccccccccccccccceeeeeeccccCC---------------------CccceeeeeeeeeeeecCCC
Confidence            64  45567777777888998887653322211111222                     33455566666677777788


Q ss_pred             eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001224          603 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  653 (1120)
Q Consensus       603 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  653 (1120)
                      .|..++..... ...+. .........++++++|.++++-..++.|+.++.
T Consensus       204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888765443 22222 222335678999999988877666777766543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.3e-06  Score=90.18  Aligned_cols=201  Identities=11%  Similarity=0.146  Sum_probs=109.8

Q ss_pred             cCCCCceEEEEEcCCCCeEEEEECCC---eEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEE
Q 001224          423 KDPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  499 (1120)
Q Consensus       423 ~~h~~~V~~l~~spdg~~las~~~dg---~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~v  499 (1120)
                      ..+...+..-+|||||++||......   .+.+.+..++...    .+..+.+.+....|+|+|+.+ +.....++...+
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~  109 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNL  109 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccce
Confidence            33566788999999999999875543   4666677776533    255677888999999999963 333333333333


Q ss_pred             --EECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE--ecCCCCCceeeeCCCCceeEEEEcCCCCeEE
Q 001224          500 --WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  575 (1120)
Q Consensus       500 --wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~  575 (1120)
                        +............ .........+....+ ..+++...+|...+|  ++..... ..............++|      
T Consensus       110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~sp------  180 (269)
T d2hqsa1         110 YVMDLASGQIRQVTD-GRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS------  180 (269)
T ss_dssp             EEEETTTCCEEECCC-CSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT------
T ss_pred             eecccccccceeeee-ccccccccccccccc-cceecccccCCceEeeeecccccc-eeeeccccccccccccc------
Confidence              3322333222222 333333334433332 345555555554444  4443222 12222223333444444      


Q ss_pred             ecccccceeEEEEcCCCCEEEEEe-CCCe--EEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECC---CcEE
Q 001224          576 QGFRKRSLGVVQFDTTKNRFLAAG-DDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIK  649 (1120)
Q Consensus       576 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~  649 (1120)
                                     ++..++..+ ..+.  +.+.+...+.. ..+. ..  .......|||||+.|+..+..   ..|.
T Consensus       181 ---------------dg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         181 ---------------DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-ST--FLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             ---------------TSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CS--SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ---------------ccceeEEEeecCCceeeeEeecccccc-eEee-cC--ccccceEECCCCCEEEEEEcCCCCcEEE
Confidence                           445566544 3344  44445544433 2222 22  235678999999998765543   4577


Q ss_pred             EEEccCc
Q 001224          650 ILATSDG  656 (1120)
Q Consensus       650 iwd~~~~  656 (1120)
                      ++++..+
T Consensus       242 ~~~~dg~  248 (269)
T d2hqsa1         242 LVSTDGR  248 (269)
T ss_dssp             EEETTSC
T ss_pred             EEECCCC
Confidence            8887655

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=3.1e-06  Score=89.55  Aligned_cols=234  Identities=12%  Similarity=0.089  Sum_probs=146.0

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCC--Cc--EEEEEeecce
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SS--IQIYNVRVDE  899 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--g~--v~vwd~~~~~  899 (1120)
                      ..+..++|.++|+..++-. +++|..|+..+......+.........+++++ ||+++++...+  ..  |...+..++.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            3456899999998666654 78899999887766665555566789999999 88887765432  23  4444433333


Q ss_pred             eeEeecc--cccceEEEEEccCCCEEEEEeCC------CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCc
Q 001224          900 VKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  971 (1120)
Q Consensus       900 ~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~  971 (1120)
                      .......  -......+++.++|++.++....      +.+..++.+....  .......       .....++|+||++
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~--~~~~~~~-------~~pnGia~s~dg~  189 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNI-------SVANGIALSTDEK  189 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEE-------SSEEEEEECTTSS
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee--EEEeecc-------ceeeeeeeccccc
Confidence            3222221  12346789999999877764322      2233333333211  1111111       1336799999998


Q ss_pred             EEEEE--eCCeEEEEEcCCce-ee---ec--cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCc
Q 001224          972 HFLVV--HETQLAIFETTKLE-CV---KQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1043 (1120)
Q Consensus       972 ~la~~--~d~~v~i~d~~~~~-~~---~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~ 1043 (1120)
                      .|.++  ..+.|..|++.... ..   ..  ............|++..+|++.++....+.|.+|| ..|+.+..+.   
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~---  265 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL---  265 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE---
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe---
Confidence            77664  67899999876431 11   10  01011123467899999999888888899999999 5789998887   


Q ss_pred             ccCCCCCCCCccceEEEecCCCCCEEEEEeC
Q 001224         1044 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1074 (1120)
Q Consensus      1044 ~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~ 1074 (1120)
                       +|.........+.+++|.|. ...+++...
T Consensus       266 -~P~~~~~~~~~~~~~~~~~~-~~~~~~t~~  294 (319)
T d2dg1a1         266 -IPGRDEGHMLRSTHPQFIPG-TNQLIICSN  294 (319)
T ss_dssp             -CTTGGGTCSCBCCEEEECTT-SCEEEEEEE
T ss_pred             -CCCcCCCcCceeeeEEEeCC-CCEEEEEcC
Confidence             34322222334558999984 555555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.69  E-value=2.9e-06  Score=89.34  Aligned_cols=241  Identities=15%  Similarity=0.136  Sum_probs=148.7

Q ss_pred             CccEEEEccCCCEEEEEe--------CCcEEEEEcCCCceeeeecCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          826 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~s--------dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                      ....++|.++|++.++..        +|+|..||..++.........    ......++|++ +++.|+++...+.|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            456789999999877643        367889998877654333221    22367899999 77777777766778888


Q ss_pred             EeecceeeEeecccc----cceEEEEEccCCCEEEEEeCC-------------CCEEEEECCCcccccceeeeccCCCCC
Q 001224          894 NVRVDEVKSKLKGHS----KRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKNRFLQIPTGRTP  956 (1120)
Q Consensus       894 d~~~~~~~~~l~~h~----~~V~~l~~s~d~~~l~s~s~D-------------g~v~iWd~~~~~~~~~~~~~~~~~~~~  956 (1120)
                      +...+..........    ...+.+++.++|.+.++-...             ..-++|.+...... .......     
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~-~~~~~~~-----  171 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAF-----  171 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEEEE-----
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce-eEeeCCc-----
Confidence            876543221111111    135779999999988874321             11234433321111 1111111     


Q ss_pred             CCCCCcEEEEccCCc----EEEEE--eCCeEEEEEcCCceeeec---c-c-cCCCCCCeeEEEECCCCcEEEEEEcCCcE
Q 001224          957 TAQSDTRVQFHQDQI----HFLVV--HETQLAIFETTKLECVKQ---W-V-PRESSAPITHATFSCDSQLVYACFLDATV 1025 (1120)
Q Consensus       957 ~~~~i~~~~fspdg~----~la~~--~d~~v~i~d~~~~~~~~~---~-~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v 1025 (1120)
                        .....++|+|++.    .|.++  ..+.|..||+.....+..   + . ...+......+++..+|++.++....+.|
T Consensus       172 --~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         172 --QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             --SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             --ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence              1235789998764    44443  667888888754322211   1 0 11123346789999999988887788999


Q ss_pred             EEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCC-EEEEEeCCCcEEEEecCCC
Q 001224         1026 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLES 1086 (1120)
Q Consensus      1026 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~-~l~s~~~Dg~v~vW~~~~~ 1086 (1120)
                      .+||.++++.+..+.    .+.      -.+..++|.| |++ ++++.+.+|.|...++...
T Consensus       250 ~~~dp~~g~~~~~i~----~p~------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIR----CPF------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEECTTCBSCSEEEE----CSS------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEeCCCCEEEEEEE----CCC------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCC
Confidence            999999888776665    221      2344799998 566 5566677787777776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.67  E-value=1.7e-05  Score=83.70  Aligned_cols=242  Identities=12%  Similarity=0.065  Sum_probs=148.2

Q ss_pred             CCCCceEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEE
Q 001224          363 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  442 (1120)
Q Consensus       363 h~~~v~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  442 (1120)
                      ....+..++|.++|+ |.++-...+.|.-|+.++++....                   ..........++|++||++++
T Consensus        38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred             CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEE
Confidence            345567899999998 788888889999999887654431                   223445678999999999888


Q ss_pred             EEECC----CeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecC------CCcEEEEECCCCceeEEee
Q 001224          443 VAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       443 s~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~  512 (1120)
                      +...+    +.+...+..++.... ...-..-....+.+++.++|.  +.++...      .+.+..++.. +..+..+.
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~  173 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII  173 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEe
Confidence            76432    334444555544222 111111123578899999998  4555322      1235555533 33333333


Q ss_pred             ccccCeEEEeeccCCCceEE-EEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCC
Q 001224          513 GHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  591 (1120)
Q Consensus       513 ~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~  591 (1120)
                      ..-.....++|+++  ++.| ++-+..+.|..|+++..........     ........        .......++++.+
T Consensus       174 ~~~~~pnGia~s~d--g~~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~~--------~~~~PdGl~vD~~  238 (319)
T d2dg1a1         174 QNISVANGIALSTD--EKVLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFT--------GHEGPDSCCIDSD  238 (319)
T ss_dssp             EEESSEEEEEECTT--SSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECC--------SSSEEEEEEEBTT
T ss_pred             eccceeeeeeeccc--cceEEEecccCCceEEEEEcCCCceecccc-----ceeeeccC--------CccceeeeeEcCC
Confidence            23344567888554  4444 5556688999998875432221100     00000000        0012345778888


Q ss_pred             CCEEEEEeCCCeEEEEECCCCceeEEEecCC----CCCCcCeEEEcCCCCEEEEEEC
Q 001224          592 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN  644 (1120)
Q Consensus       592 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~  644 (1120)
                      |+..++....+.|.+||. .|+.+..+....    +...+.+++|.+++..+++...
T Consensus       239 G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         239 DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            888888888999999996 688888776442    2335789999998877766654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=6.1e-05  Score=77.61  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=128.2

Q ss_pred             EEccC--CCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeC-CC-----cEEEEEeecceeeE
Q 001224          831 ALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS-----SIQIYNVRVDEVKS  902 (1120)
Q Consensus       831 ~~s~d--~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg-----~v~vwd~~~~~~~~  902 (1120)
                      .++||  |+.++..++|.|.+.|+.+++. +.+..+...+...+||| ||+.||.... ++     .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  9999988888999999998775 45555667789999999 8888886532 22     36777776666543


Q ss_pred             eec------ccccceEEEEEccCCCEEEEEeCCC------CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCC
Q 001224          903 KLK------GHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  970 (1120)
Q Consensus       903 ~l~------~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg  970 (1120)
                      ...      ..........|+|||+.|+......      .+...+...+.     ......+      ......+.+++
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~  151 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN-----FVPLNLG------PATHILFADGR  151 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE-----EEECCSC------SCSEEEEETTE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce-----eEEecCC------ccceeeecCCC
Confidence            211      1223456789999999998754321      23444444422     1111111      22334444444


Q ss_pred             cEEEEEe-C-----------CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC--CcEEEEEcCCccee
Q 001224          971 IHFLVVH-E-----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLR 1036 (1120)
Q Consensus       971 ~~la~~~-d-----------~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~iwd~~~~~~~ 1036 (1120)
                      ..++... +           ....+............   .+........++++.. +.....+  ..|+++|+.+++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~  227 (281)
T d1k32a2         152 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV---DMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR  227 (281)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE---CCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE
T ss_pred             eEEEeeccccceeeeeccCCcceeeeeccccceeecc---CCccccceeeeecccc-ceecccccccceEEEeCCCCceE
Confidence            4444321 1           11222222222222221   1233445555665532 2223233  35778888877665


Q ss_pred             eeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCC
Q 001224         1037 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1087 (1120)
Q Consensus      1037 ~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1087 (1120)
                      ....       +   ....  ...|+| ||+.|+.. .+|.|+++|+.+++
T Consensus       228 ~lt~-------~---~~~~--~~~~Sp-DG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         228 KHTS-------F---TDYY--PRHLNT-DGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             ECCC-------C---CSSC--EEEEEE-SSSCEEEE-ETTEEEEECTTTCC
T ss_pred             Eeec-------C---CCcc--cccCcC-CCCEEEEE-eCCEEEEEECCCCC
Confidence            3211       1   0122  246888 67777764 47899999999988

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=7.6e-05  Score=76.85  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             EEecC--CCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEEC-C
Q 001224          371 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R  447 (1120)
Q Consensus       371 ~~spd--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d  447 (1120)
                      ..|||  |++++.+.  +|.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46899  99866664  4678888999887643                    5567778999999999999997542 2


Q ss_pred             -----CeEEEEEccCCceeeeeee---ecccccCeEEEEEcCCCCc
Q 001224          448 -----HIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQ  485 (1120)
Q Consensus       448 -----g~v~iwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~d~~~  485 (1120)
                           ..|.+++..+++..+....   ...........+|+|||+.
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence                 2477778888765431100   1112235678899999995

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.16  E-value=0.001  Score=68.39  Aligned_cols=232  Identities=12%  Similarity=0.042  Sum_probs=145.6

Q ss_pred             eEEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECC
Q 001224          368 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  447 (1120)
Q Consensus       368 ~~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  447 (1120)
                      .+..|++....|..+--..+.|.-||.++++...      |.               ....+.++++.++|+++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEE-EeC
Confidence            4567888666567776677899999999886532      11               2346889999999987775 444


Q ss_pred             CeEEEEEccCCceeeeeeeeccc--ccCeEEEEEcCCCCceEEEEecC----CCcEEEEECCCCceeEEeeccccCeEEE
Q 001224          448 HIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSV  521 (1120)
Q Consensus       448 g~v~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~s~----d~~i~vwd~~~~~~~~~~~~h~~~v~~~  521 (1120)
                       -+.++|..+++.. .+......  ...++.+.+.|+|.  +.++...    .+.-.+|.+..++....+.. -..-..+
T Consensus        79 -gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 -GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             -EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             -ccEEeecccceee-EEeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence             4899999988743 22222221  23588999999998  4444322    23456777777765554433 2345667


Q ss_pred             eeccCCCceEEEEEecCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEEeCC
Q 001224          522 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  601 (1120)
Q Consensus       522 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  601 (1120)
                      +|+++.+ .++++-+..+.|..++++.......-   ..  . +.....       ...+....++++.+|+..++.-..
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~~--~-~~~~~~-------~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---KA--E-VFIDST-------GIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---CC--E-EEEECT-------TSSSEEEEEEECTTSCEEEEEETT
T ss_pred             eecCCCc-eEEEeecccceeeEeeeccccccccc---ce--E-EEeccC-------cccccccceEEcCCCCEEeeeeCC
Confidence            7755432 35566667788988887643221100   00  0 000000       011234556777788877777788


Q ss_pred             CeEEEEECCCCceeEEEecCCCCCCcCeEEEc-CCCCEEEEEE
Q 001224          602 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST  643 (1120)
Q Consensus       602 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  643 (1120)
                      +.|..||. .|+.+..+....  ..+++++|- +|.+.|++.+
T Consensus       220 g~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         220 GAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred             CceEEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEEEE
Confidence            89999996 688888887653  358899996 5766666544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.001  Score=68.34  Aligned_cols=220  Identities=7%  Similarity=0.023  Sum_probs=142.8

Q ss_pred             cEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224          828 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       828 ~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .+..|++....|.-..  .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .|.++|..+++......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            3566777555555544  688999999887643 333 345688999998 7877764 454 58899988886433221


Q ss_pred             --c--cccceEEEEEccCCCEEEEEeCC----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001224          906 --G--HSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  976 (1120)
Q Consensus       906 --~--h~~~V~~l~~s~d~~~l~s~s~D----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-  976 (1120)
                        .  ....++.+.+.++|++.++...+    +.-.+|.+..++..  ......       .....++|+++++.+..+ 
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~--~~~~~~-------~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT--KLFADI-------SIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE--EEEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEE--EEeecc-------CCcceeeecCCCceEEEee
Confidence              1  22357889999999877765432    34566766654321  111111       123689999999977764 


Q ss_pred             -eCCeEEEEEcCCce------eeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCC
Q 001224          977 -HETQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1049 (1120)
Q Consensus       977 -~d~~v~i~d~~~~~------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~ 1049 (1120)
                       ..+.|..|++....      ........+-.+....+++..+|.+.++.-..+.|..|| .+|+++..+.    +|.  
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~----lP~--  239 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE----VPG--  239 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE----CSC--
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec----CCC--
Confidence             56788888874321      111111122345688999999999888777788999999 5788998887    442  


Q ss_pred             CCCCccceEEEecCCCCCEEEEE
Q 001224         1050 SSSNVHPLVIAAHPQEPNEFALG 1072 (1120)
Q Consensus      1050 ~~~~v~~~~i~~~p~d~~~l~s~ 1072 (1120)
                          -.+.+++|-..|.+.|++.
T Consensus       240 ----~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         240 ----KQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             ----SBEEEEEEESTTSCEEEEE
T ss_pred             ----CceEEEEEeCCCCCEEEEE
Confidence                2355899975455655443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.89  E-value=0.0029  Score=65.55  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             ccEEEEccCCCEEEEEe--CCcEEEEEcCCCcee-----------eeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001224          827 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-----------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  893 (1120)
Q Consensus       827 v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  893 (1120)
                      ...+.++|||+++++++  +.++.|+|++.....           ..-....-....-+|+. .|.-..+-.-|..|.-|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEE
Confidence            45689999999999987  799999998632111           11111233467788988 67666667789999999


Q ss_pred             Eeecc----------eeeEeecccccceEEE------EEccCCCEEEEEeC
Q 001224          894 NVRVD----------EVKSKLKGHSKRITGL------AFSHALNVLVSSGA  928 (1120)
Q Consensus       894 d~~~~----------~~~~~l~~h~~~V~~l------~~s~d~~~l~s~s~  928 (1120)
                      ++...          ..+..+.-|-. +-.+      ...|||++|++...
T Consensus       356 ~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         356 NIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEecc
Confidence            98643          34445543332 1222      24689999998753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.58  E-value=0.011  Score=63.25  Aligned_cols=260  Identities=15%  Similarity=0.094  Sum_probs=134.1

Q ss_pred             ceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-C-CcEEEEEcCCCceeee--ecCCCCCeEEEEEecCCC
Q 001224          803 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDN  878 (1120)
Q Consensus       803 ~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-d-g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~  878 (1120)
                      +.+||+.++...........+.....+.++.++|++++.|. + ..+.+||..+..-...  +... ..-.+++..+ |+
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~-dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS-DG  131 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT-TS
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccc-ccccceeeec-CC
Confidence            34677777764332211112344455678889999999987 3 6799999886544322  2211 1234566667 88


Q ss_pred             cEEEEEeCC------CcEEEEEeecceeeE--eec-------cccc-----ceEEEEEccCCCEEEEEeCCCCEEEEECC
Q 001224          879 NIIAIGMDD------SSIQIYNVRVDEVKS--KLK-------GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSD  938 (1120)
Q Consensus       879 ~~lasg~~d------g~v~vwd~~~~~~~~--~l~-------~h~~-----~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~  938 (1120)
                      ++++.|+.+      ..+.+||..+.+-..  ...       .+..     .-..+...++|+.++.++.++.+.+++..
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence            899888753      368999987754211  110       0110     01112334577778877777777777776


Q ss_pred             CcccccceeeeccCCCCCCCCCCcEEEE-ccCCcEEEEE-eC--------CeEEEEEcCC---ce-eeeccccCCCCCCe
Q 001224          939 GWEKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVV-HE--------TQLAIFETTK---LE-CVKQWVPRESSAPI 1004 (1120)
Q Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f-spdg~~la~~-~d--------~~v~i~d~~~---~~-~~~~~~~~~h~~~v 1004 (1120)
                      +.....................-.++.+ ..+++.++.+ ..        ....+.+...   .. .......-.+...-
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  291 (387)
T d1k3ia3         212 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF  291 (387)
T ss_dssp             TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS
T ss_pred             cCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccccc
Confidence            6443221111111111110111123333 3467777664 21        1233333321   11 11111111123334


Q ss_pred             eEEEECCCCcEEEEEEcC-----------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEE-ecCCCCCEEEEE
Q 001224         1005 THATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA-AHPQEPNEFALG 1072 (1120)
Q Consensus      1005 ~~l~~s~dg~~l~s~~~D-----------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~-~~p~d~~~l~s~ 1072 (1120)
                      .+.+..+||++++.|+.+           .++.+||..+.+-... .........|        +.+ ..+ ||+.++.|
T Consensus       292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~~~~~R~~H--------s~a~l~~-dG~v~v~G  361 (387)
T d1k3ia3         292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NPNSIVRVYH--------SISLLLP-DGRVFNGG  361 (387)
T ss_dssp             CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CCCSSCCCTT--------EEEEECT-TSCEEEEE
T ss_pred             ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CCCCCcccce--------EEEEECC-CCEEEEEe
Confidence            456667899999988853           1578999888764322 1111111111        222 345 78999998


Q ss_pred             eC
Q 001224         1073 LS 1074 (1120)
Q Consensus      1073 ~~ 1074 (1120)
                      +.
T Consensus       362 G~  363 (387)
T d1k3ia3         362 GG  363 (387)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.011  Score=61.14  Aligned_cols=197  Identities=14%  Similarity=0.149  Sum_probs=123.2

Q ss_pred             EEEEc---cCCCEEEEEe--CCcEEEEEcCCCceeeeecC-CCCCeEEEEEecC-CCcEEEEEeCCC-------------
Q 001224          829 CFALS---KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDDS-------------  888 (1120)
Q Consensus       829 ~l~~s---~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~sp~-d~~~lasg~~dg-------------  888 (1120)
                      .+.+.   +||+++.+..  +++|.+.|+++.++.+.... ....+..+...++ ...|++.++++.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            44554   4899999987  68899999999988664432 3345666666541 345776666532             


Q ss_pred             -----cEEEEEeecceeeEeecccccceEEEEEccCCCEEEEEeCCCC---------------EEEEE------------
Q 001224          889 -----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ---------------LCVWS------------  936 (1120)
Q Consensus       889 -----~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~---------------v~iWd------------  936 (1120)
                           .+.++|..+.+....+.- ......+++++||+++++.+.+..               +.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 356778887776655543 234567899999999998775421               23333            


Q ss_pred             -----------CCCcccccceee-eccCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceeee--------c
Q 001224          937 -----------SDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--------Q  994 (1120)
Q Consensus       937 -----------~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~fspdg~~la~~--~d~~v~i~d~~~~~~~~--------~  994 (1120)
                                 ......  ...+ -.+.+     .....+.++|||++++++  -+..+.|+|+++.....        .
T Consensus       248 ~~eingV~VVD~~~~~~--~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             SEEETTEEEEECSGG----CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             cEEeCCceeecccccCC--cceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                       221100  0011 01111     234788999999999995  67899999997532210        0


Q ss_pred             ccc-CCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCc
Q 001224          995 WVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1033 (1120)
Q Consensus       995 ~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~ 1033 (1120)
                      ... ....-....-+|..+|.-..+-.-|..|.-|++...
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            000 012445667789888865555568999999998543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.049  Score=54.18  Aligned_cols=231  Identities=11%  Similarity=0.023  Sum_probs=127.4

Q ss_pred             EEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEE-CCCeEEEEEccC
Q 001224          379 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHG  457 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~dg~v~iwd~~~  457 (1120)
                      ||++-.  ..|+-.++.+.....                    +......+.+++|.+..++|.-.. .++.|.--++..
T Consensus         4 Ll~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~   61 (266)
T d1ijqa1           4 LFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (266)
T ss_dssp             EEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence            455433  458888887654322                    222445678999999888777664 456676666654


Q ss_pred             Cceeee-eeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEe
Q 001224          458 GDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  536 (1120)
Q Consensus       458 ~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  536 (1120)
                      ...... ...+......+..+++.+.+.. +..+-...+.|.+.++........+.........+++++. .|.+.++..
T Consensus        62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~  139 (266)
T d1ijqa1          62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW  139 (266)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence            221111 1112233356778999887776 4455567788999998876655555555566778887653 333443332


Q ss_pred             -cCCeEEEEecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCce
Q 001224          537 -LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL  614 (1120)
Q Consensus       537 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~  614 (1120)
                       ..+.|...+++................                     .+++++.++.|..+ ...+.|...++.....
T Consensus       140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~---------------------gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVDIYSLVTENIQWPN---------------------GITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEE---------------------EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcceeEeccCCCceecccccccceee---------------------EEEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence             234555555543322221111222233                     44555544455554 4567888888866554


Q ss_pred             eEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCc
Q 001224          615 LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDG  656 (1120)
Q Consensus       615 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  656 (1120)
                      ..............++++.  +..|... ..++.|...+..++
T Consensus       199 ~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         199 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            4444333332334456665  3444444 45677777776665

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.52  E-value=0.018  Score=64.67  Aligned_cols=83  Identities=14%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceE
Q 001224          979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1058 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 1058 (1120)
                      |.|.-+|+.+++.+-......   +..+=.++-.+.++++|+.||.++.+|.++|+.+-+++    ++.+....     -
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~----l~~~~~a~-----P  511 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK----MPSGGIGS-----P  511 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSCCCSC-----C
T ss_pred             ccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE----CCCCceec-----c
Confidence            578888888888775544321   11111122346678889999999999999999998887    44442222     2


Q ss_pred             EEecCCCCCEEEEEe
Q 001224         1059 IAAHPQEPNEFALGL 1073 (1120)
Q Consensus      1059 i~~~p~d~~~l~s~~ 1073 (1120)
                      +.|..+..+|+++..
T Consensus       512 ~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         512 MTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             eEEEECCEEEEEEEe
Confidence            455553334565544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=0.096  Score=58.78  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=53.7

Q ss_pred             CeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceE
Q 001224          979 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1058 (1120)
Q Consensus       979 ~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 1058 (1120)
                      |.+.-+|+.+++.+-.....   .++.+=.++..|.++++|+.||.++.+|..||+.+-+++    ++.+....     -
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~----~~~~~~~~-----P  533 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ----TGSGIVSP-----P  533 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSCCCSC-----C
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE----CCCCcccc-----C
Confidence            56788888888877655432   222222234567888889999999999999999998887    44442222     2


Q ss_pred             EEecCCCC-CEEEEE
Q 001224         1059 IAAHPQEP-NEFALG 1072 (1120)
Q Consensus      1059 i~~~p~d~-~~l~s~ 1072 (1120)
                      +.|.. || +|+++.
T Consensus       534 ~ty~~-~G~qYv~i~  547 (582)
T d1flga_         534 ITWEQ-DGEQYLGVT  547 (582)
T ss_dssp             EEEEE-TTEEEEEEE
T ss_pred             EEEEE-CCEEEEEEE
Confidence            45655 45 455544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.43  E-value=0.023  Score=64.06  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=49.3

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCC-E
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V  922 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-~  922 (1120)
                      |.|.-||+.+++.+-.... ......=.++- .+.+++.|+.||.++-+|..+|+.+.+++-.... -.-+.|..||+ |
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            4577888888877654431 11121112233 4567778999999999999999999877543221 11255666885 4


Q ss_pred             EEE
Q 001224          923 LVS  925 (1120)
Q Consensus       923 l~s  925 (1120)
                      ++.
T Consensus       531 vav  533 (596)
T d1w6sa_         531 VAI  533 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.054  Score=53.68  Aligned_cols=203  Identities=10%  Similarity=-0.031  Sum_probs=130.6

Q ss_pred             CCccEEEEccCCCEEEEEe--CCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE
Q 001224          825 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  902 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  902 (1120)
                      ..+.+++|....+.+....  ++.|+..++........+......+..+++....+++..+-...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            3467789998888888775  57799989876555444544445789999987455555555667799999987544333


Q ss_pred             eecccccceEEEEEccCCCEEEEEeCC-CCEEEE--ECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001224          903 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  977 (1120)
Q Consensus       903 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~iW--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~--~  977 (1120)
                      .+.........+++.|...+|.-.... +..+||  +++....  .....  .+.    .....+++.+.+..|..+  .
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~--~~~----~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQ--DNL----GLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEEC--TTC----SCEEEEEEETTTTEEEEEETT
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeee--ecc----cccceEEEeecCcEEEEEeCC
Confidence            333344678899999887777644332 344555  4444221  11111  111    245789999888777664  5


Q ss_pred             CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEE-cCCcEEEEEcCCcceeeeeC
Q 001224          978 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       978 d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      .+.|...++........+.  + .....+|++.  +.+|+... ..+.|...|..+++.+..+.
T Consensus       188 ~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            6789999987665443332  2 2235678774  45555554 56889999999998876654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.40  E-value=0.016  Score=64.98  Aligned_cols=149  Identities=11%  Similarity=0.035  Sum_probs=90.4

Q ss_pred             cEEEEEeecceeeEeecccccceEE---------EEEccCC---CEEEEEeCCCCEEEEECCCcccccceeeec------
Q 001224          889 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------  950 (1120)
Q Consensus       889 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~---~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~------  950 (1120)
                      .|.-.|+.+++.+..++.....++.         +....++   +.++.++.+|.+.++|-.+++.........      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            4566677788776655442222221         2222244   367788899999999999887543211100      


Q ss_pred             -----------cC-----------CCCCCCCCCcEEEEccCCcEEEE-Ee------------------------------
Q 001224          951 -----------PT-----------GRTPTAQSDTRVQFHQDQIHFLV-VH------------------------------  977 (1120)
Q Consensus       951 -----------~~-----------~~~~~~~~i~~~~fspdg~~la~-~~------------------------------  977 (1120)
                                 ..           ........-...+++|+..++.+ ..                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                       00           00000001135677888777765 22                              


Q ss_pred             ------CCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224          978 ------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       978 ------d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                            .+.+.-||+.+++.+-......+   ..+-.++-.|.++++|+.||.++.+|..+|+.+-+++
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                  14678889999988766554322   2222234457788889999999999999999998887

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.39  E-value=0.0025  Score=72.30  Aligned_cols=153  Identities=9%  Similarity=0.084  Sum_probs=85.9

Q ss_pred             cEEEEEeCCCcEEEEEeecceeeEeeccccc-----------------------------------ceEEEEEccCCCEE
Q 001224          879 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-----------------------------------RITGLAFSHALNVL  923 (1120)
Q Consensus       879 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-----------------------------------~V~~l~~s~d~~~l  923 (1120)
                      ..++.++.+|.++++|..+|+.+........                                   .-..++++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            4677788899999999988887654321100                                   01134677777777


Q ss_pred             EEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceeeeccccCCCCCC
Q 001224          924 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP 1003 (1120)
Q Consensus       924 ~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~~d~~v~i~d~~~~~~~~~~~~~~h~~~ 1003 (1120)
                      .....+....++.....+....     ..+............+ +++.-.....-|.+.-||+.+++.+-.....   .+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~---~p  478 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQA-----GPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SP  478 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCC-----CTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SS
T ss_pred             EeeccccceeeecccccccccC-----CCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC---CC
Confidence            7766666666665544321110     0000000000000000 0000000011246778888888887655432   12


Q ss_pred             eeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeeeeC
Q 001224         1004 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus      1004 v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      ..+=..+-.|.+|++|+.||.++.+|..+|+.+-.+.
T Consensus       479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            1111234468888899999999999999999998887

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.37  E-value=0.018  Score=64.75  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccce-EEEEEccCCC-E
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  922 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  922 (1120)
                      |.|.-||+.+++.+-..... .....-.++- .+.++++|+.||.++-+|..+|+.+..++-..... .-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            45778888888877654321 1111112233 45577889999999999999999998776432211 1256667885 5


Q ss_pred             EEEEe
Q 001224          923 LVSSG  927 (1120)
Q Consensus       923 l~s~s  927 (1120)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.046  Score=54.34  Aligned_cols=207  Identities=7%  Similarity=-0.056  Sum_probs=126.4

Q ss_pred             CCCccEEEEccCCCEEEEEe--CCcEEEEEcCCCc----eeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001224          824 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  897 (1120)
Q Consensus       824 ~~~v~~l~~s~d~~~l~~~s--dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  897 (1120)
                      ...+.+++|.+..+.+....  .+.|.-.++....    ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            44567899998888888775  4667766664321    11223333455778999874555555555667899999876


Q ss_pred             ceeeEeecccccceEEEEEccCCCEEEEEe--CCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          898 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       898 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      ......+........++++.|...+|.-..  ..+.|.-.+++....   ..+.....     .....+++.+.+..|..
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---~~l~~~~~-----~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENI-----QWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSC-----SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---eccccccc-----ceeeEEEeeccccEEEE
Confidence            655555555566788999998766665443  234455556655321   11111111     24578999998887777


Q ss_pred             E--eCCeEEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEE-EcCCcEEEEEcCCcceeeeeC
Q 001224          976 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRIN 1040 (1120)
Q Consensus       976 ~--~d~~v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~iwd~~~~~~~~~~~ 1040 (1120)
                      +  ..+.|...++...................+|++.  +.+|+.+ ..++.|+..+..++.....+.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            4  5678888888765443333322223456677775  4445544 456788888877776655444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.11  Score=50.48  Aligned_cols=229  Identities=14%  Similarity=0.152  Sum_probs=145.9

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeEee
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKL  904 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l  904 (1120)
                      ...+.-++|..+.||.-+..++.+||+++.+.++.+.- ...|.--.|-.  .+.|+..+ +..|+-|+++. ....+.+
T Consensus        64 ~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          64 SADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             CCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             chhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhh
Confidence            34567788999999988888999999999888887763 34576677764  45676665 55899999954 2455666


Q ss_pred             cccc----cceEEEEEccCCCEEEEEe---C----CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC----
Q 001224          905 KGHS----KRITGLAFSHALNVLVSSG---A----DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----  969 (1120)
Q Consensus       905 ~~h~----~~V~~l~~s~d~~~l~s~s---~----Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd----  969 (1120)
                      .-|.    ..|..-..+++.+|++..|   .    .|.+.+|..+..      .-+..+||..     .-..+--+    
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~  208 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAE  208 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSS
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC------cCccccceee-----eeEEEEcCCCCC
Confidence            5554    4577777889999987543   2    366889988873      3444555532     11122111    


Q ss_pred             CcEEEE-E----eCCeEEEEEcCCcee---------eec-cccCCCCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcc
Q 001224          970 QIHFLV-V----HETQLAIFETTKLEC---------VKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1034 (1120)
Q Consensus       970 g~~la~-~----~d~~v~i~d~~~~~~---------~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~ 1034 (1120)
                      ...|.+ +    ..++++|-++.....         +.. +.+..-.+-.-++..|+.-..++..+.-|.|++||+.|+.
T Consensus       209 ~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         209 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             CEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence            122332 3    225788888765211         111 1122335556788888888888889999999999999999


Q ss_pred             eeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEE
Q 001224         1035 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1080 (1120)
Q Consensus      1035 ~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~v 1080 (1120)
                      .+.+-+    ..    ...|+  ..+... +..=++....+|.|.-
T Consensus       289 ~i~~nR----Is----~~~iF--~~a~~~-~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         289 CIYMNR----IS----GETIF--VTAPHE-ATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEE----CC----SSCEE--EEEEET-TTTEEEEEETTSEEEE
T ss_pred             EEEEee----cC----CCceE--EeccCC-CCceEEEECCCCeEEE
Confidence            998755    21    22244  222333 2334555557777653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.1  Score=51.49  Aligned_cols=202  Identities=11%  Similarity=0.049  Sum_probs=116.4

Q ss_pred             CCCCceEEEEEcCCCCeEEEEE-CCCeEEEEEccCCceeeeeeeecccccCeEEEEEcCCCCceEEEEecCCCcEEEEEC
Q 001224          424 DPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  502 (1120)
Q Consensus       424 ~h~~~V~~l~~spdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~  502 (1120)
                      .+...+.+|+|.+..++|.-.. .++.|+..+++++....   .+......+.++++..-+.. +..+-...+.|.+.++
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence            3445688899998877777654 55778888888765332   23333457889999876765 4455566789999998


Q ss_pred             CCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEE--ecCCCCCceeeeCCCCceeEEEEcCCCCeEEecccc
Q 001224          503 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  580 (1120)
Q Consensus       503 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~  580 (1120)
                      ....+...+.........+++++.. |.++.+-...+..++|  +++...........-..                   
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~-------------------  168 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL-------------------  168 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC-------------------
T ss_pred             CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccc-------------------
Confidence            7655443344334567788876543 3333333222232333  34332222111111122                   


Q ss_pred             cceeEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCc
Q 001224          581 RSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDG  656 (1120)
Q Consensus       581 ~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  656 (1120)
                        ...+++++.++.|..+ ...+.|...++........+....   ...++++.  +..|... ...+.|...|..++
T Consensus       169 --P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         169 --PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             --EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             --cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence              2345555555556554 457788888886655444444322   23467765  3444444 45678888887766

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.18  E-value=0.047  Score=57.98  Aligned_cols=272  Identities=8%  Similarity=0.028  Sum_probs=136.0

Q ss_pred             CCCcceeeccCCC-----------cceeeecccCCCCccceeeccCCccccccEEEEEEcCCCceEEEeccC-ceEEEee
Q 001224          718 ADVKPRITEESND-----------KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWK  785 (1120)
Q Consensus       718 ~~~~~l~~~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~  785 (1120)
                      .+++.++.++.+.           .+.+||..+..-... ....   ..+..-....++.++|+.++.++.+ ..+.+||
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~---~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTV---TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEE---CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec-CCCC---CCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            4566666655321           256788776432211 1111   1122223356788999988888765 5788887


Q ss_pred             ecccccCCCCccccccCceeecCCCCCcccccCCCCCCCCCccEEEEccCCCEEEEEe-C------CcEEEEEcCCCcee
Q 001224          786 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTM  858 (1120)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~s-d------g~i~vwd~~~~~~~  858 (1120)
                      ..+..               |....         .......-.+.+..+||+.++.|+ +      ..+.+||..+.+-.
T Consensus       105 ~~~~~---------------w~~~~---------~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         105 SSSDS---------------WIPGP---------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             GGGTE---------------EEECC---------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CccCc---------------ccccc---------cccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            65432               21100         000222234677788999999886 2      35899998765422


Q ss_pred             eeec--------C-CC-----CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEe--ecc----cccce--EEEEE
Q 001224          859 ATFM--------P-PP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--LKG----HSKRI--TGLAF  916 (1120)
Q Consensus       859 ~~~~--------~-~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~--l~~----h~~~V--~~l~~  916 (1120)
                      ..-.        . +.     ..-..+...+ ++++++.|..++.+.+++..+......  ...    +....  .++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (387)
T d1k3ia3         161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  239 (387)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             ecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEe
Confidence            1100        0 00     0011122234 677777777777777777665432211  110    11111  12222


Q ss_pred             -ccCCCEEEEEeCCC--------CEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-eC--------
Q 001224          917 -SHALNVLVSSGADS--------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--------  978 (1120)
Q Consensus       917 -s~d~~~l~s~s~Dg--------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~d--------  978 (1120)
                       ..+++.++.|+...        ...+.++.............  ...+....-.+.+..+||++++++ .+        
T Consensus       240 ~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~  317 (387)
T d1k3ia3         240 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS--NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  317 (387)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT--TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             eccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec--cccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence             34667777776432        23333333221111111111  111111223466777899988884 22        


Q ss_pred             ---CeEEEEEcCCceeeeccccCCCCCCeeE-EEECCCCcEEEEEEc
Q 001224          979 ---TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQLVYACFL 1021 (1120)
Q Consensus       979 ---~~v~i~d~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l~s~~~ 1021 (1120)
                         ..+.+||..+.+-...-.. .+...-.+ ..+.+||+.|+.|+.
T Consensus       318 ~~~~~ve~Ydp~~~~W~~~~~~-~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         318 TPVFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SBCCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cEeceEEEEECCCCeEEECCCC-CCcccceEEEEECCCCEEEEEeCC
Confidence               1478999988764332111 11221222 346799999998874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.17  E-value=0.16  Score=56.97  Aligned_cols=123  Identities=14%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             EEEEEeCCCcEEEEec-CCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcC----CCCeEEEEECCCeEEEE
Q 001224          379 LLLVGTNVGDIGLWEV-GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----DGSLFGVAYSRHIVQIY  453 (1120)
Q Consensus       379 lla~g~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~las~~~dg~v~iw  453 (1120)
                      |.++++.++.|...|. ++|+.+-++..+.       ..... ........-+.+++.+    .+.+++.++.|+.|.-.
T Consensus        65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~-------~~~~~-~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Al  136 (596)
T d1w6sa_          65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-------NPAAR-AVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL  136 (596)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCC-------CGGGG-GGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred             EEEeeCCCCcEEEEeCCCCCCEEEEecCCC-------Ccccc-cccccccccceeEEecCCCCCceEEEEEeCCCCeEee
Confidence            3444444677777776 5788765432211       00000 0111111112344433    24578889999999999


Q ss_pred             EccCCceeeeeeeeccccc-CeEEEEEcCCCCceEEEEec------CCCcEEEEECCCCceeEEee
Q 001224          454 SYHGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFE  512 (1120)
Q Consensus       454 d~~~~~~~~~~~~l~~h~~-~V~~v~~s~d~~~~~l~s~s------~d~~i~vwd~~~~~~~~~~~  512 (1120)
                      |.++|+.+.....-..+.. .++.--.--++.   ++.+.      ..|.|+-+|+.+|+.+.++.
T Consensus       137 da~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         137 NAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ccccCceeccccccccccccccccCCcEECCe---EEEeeccccccccCceEEEECCCCcEEEEee
Confidence            9999987754321111111 111111111333   44443      34889999999999998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.13  E-value=0.14  Score=49.86  Aligned_cols=241  Identities=9%  Similarity=0.075  Sum_probs=145.1

Q ss_pred             EEEEecCCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCC
Q 001224          369 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  448 (1120)
Q Consensus       369 ~v~~spdg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg  448 (1120)
                      +.-.+|..+ +||.=+ ..++.|+|+++.+++....+                    ...|.-=.|-.+. .|+..+ +.
T Consensus        67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t  122 (327)
T d1utca2          67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN  122 (327)
T ss_dssp             EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SS
T ss_pred             hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CC
Confidence            455678887 455544 46899999999988875332                    2356666665443 444444 45


Q ss_pred             eEEEEEccCCceeeeeeeecccc----cCeEEEEEcCCCCceEEEEe------cCCCcEEEEECCCCceeEEeeccccCe
Q 001224          449 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAPV  518 (1120)
Q Consensus       449 ~v~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~------s~d~~i~vwd~~~~~~~~~~~~h~~~v  518 (1120)
                      .|+=|++++...  +.+.+..|.    ..|..-..+++.+. ++++|      +-.|.+.+|..+. +.-+.++||.+..
T Consensus       123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F  198 (327)
T d1utca2         123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF  198 (327)
T ss_dssp             EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE
T ss_pred             ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCE-EEEEeEecCCCceeEEEEEEEecc-CcCccccceeeee
Confidence            699999975442  222344443    36777788899886 33332      1236788998554 4457788888777


Q ss_pred             EEEeeccCCCce-EEEEEe---cCCeEEEEecCCCCC-ceeeeCCCCceeEEEEcCCCCeEEecccccceeEEEEcCCCC
Q 001224          519 YSVCPHHKENIQ-FIFSTA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  593 (1120)
Q Consensus       519 ~~~~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~i~~~~~~~~~~  593 (1120)
                      ..+.+....... .++.+.   ..+.+++-++..... ...   -......+-|.|+..       .+.-..+.+++.-.
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~---f~kk~vdi~fppea~-------~DFPvamqvs~kyg  268 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP---FPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD  268 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCC---CCCEEEECCCCTTCT-------TCCEEEEEEETTTT
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCC---CcceeEEEECCcccc-------CCcEEEEEeeccCC
Confidence            666543332222 333322   235788888765321 111   112233455666543       22344566677777


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001224          594 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  649 (1120)
Q Consensus       594 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  649 (1120)
                      .+...+.-|.|++||+.++.++..-.....  .|...+-..+..-+++....|.|.
T Consensus       269 iiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         269 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEE
Confidence            889999999999999999999887764433  344344444444444445666554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.11  E-value=0.055  Score=60.89  Aligned_cols=79  Identities=11%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccc-eEEEEEccCCC-E
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V  922 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-~  922 (1120)
                      |.|.-+|+.+++.+-....+.. +..-.++. .+.++++|+.||.++-+|..+|+.+..++-.... -.-+.|..||+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            6788889998888766553322 22112333 5667778999999999999999999887643221 12267778885 4


Q ss_pred             EEE
Q 001224          923 LVS  925 (1120)
Q Consensus       923 l~s  925 (1120)
                      ++.
T Consensus       544 v~i  546 (582)
T d1flga_         544 LGV  546 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.06  E-value=0.017  Score=65.05  Aligned_cols=78  Identities=10%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeecccccceE-EEEEccCCC-E
Q 001224          845 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALN-V  922 (1120)
Q Consensus       845 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~-~  922 (1120)
                      |.|.-||+.+++.+-..+.... ...=..+- .+.+|++|+.||.++.+|..+|+.+..++-..+... -+.|..||+ +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC-CCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5688888888888766543221 11112233 566788899999999999999999987754322111 155666886 4


Q ss_pred             EE
Q 001224          923 LV  924 (1120)
Q Consensus       923 l~  924 (1120)
                      ++
T Consensus       535 v~  536 (573)
T d1kb0a2         535 VS  536 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.04  E-value=0.057  Score=60.46  Aligned_cols=244  Identities=9%  Similarity=0.035  Sum_probs=135.1

Q ss_pred             EEEEEe-CCcEEEEEcCCCceeeeecCCC----CCeEEEEEecCCCcEEEEEe------CCCcEEEEEeecceeeEeecc
Q 001224          838 YVMSAS-GGKISLFNMMTFKTMATFMPPP----PAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKG  906 (1120)
Q Consensus       838 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~----~~i~~l~~sp~d~~~lasg~------~dg~v~vwd~~~~~~~~~l~~  906 (1120)
                      .++.++ |+.+.-.|.++++.+.......    ..++.--.-. ++.++ .+.      .+|.|+-+|+.+|+.+-++..
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEE-EeeccccccccCcEEEEECCCCcEEEEEec
Confidence            444555 8999999999998876543211    1122111112 44444 344      367899999999998876532


Q ss_pred             cc-------------------------------------cceE-EEEEccCCCEEEEEeC----------------CCCE
Q 001224          907 HS-------------------------------------KRIT-GLAFSHALNVLVSSGA----------------DSQL  932 (1120)
Q Consensus       907 h~-------------------------------------~~V~-~l~~s~d~~~l~s~s~----------------Dg~v  932 (1120)
                      ..                                     ..++ ..++.++...+..+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            10                                     1121 2345555555554433                2346


Q ss_pred             EEEECCCcccccceeeeccCCC-CCCCCCCcEEEEccCCcE---EEE-EeCCeEEEEEcCCceeeeccccCC--------
Q 001224          933 CVWSSDGWEKQKNRFLQIPTGR-TPTAQSDTRVQFHQDQIH---FLV-VHETQLAIFETTKLECVKQWVPRE--------  999 (1120)
Q Consensus       933 ~iWd~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fspdg~~---la~-~~d~~v~i~d~~~~~~~~~~~~~~--------  999 (1120)
                      .-.|+++++..........+.. ..............+|+.   ++. +.+|.+.++|..+|+.+.......        
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~  354 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccc
Confidence            6677777765322111111100 000112222233345542   222 488999999999998763321100        


Q ss_pred             ----------------------------CC-CCeeEEEECCCCcEEEEEEcC----------------------------
Q 001224         1000 ----------------------------SS-APITHATFSCDSQLVYACFLD---------------------------- 1022 (1120)
Q Consensus      1000 ----------------------------h~-~~v~~l~~s~dg~~l~s~~~D---------------------------- 1022 (1120)
                                                  +. ..-...+++|+..+++....+                            
T Consensus       355 ~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (571)
T d2ad6a1         355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccc
Confidence                                        00 001135677777776654432                            


Q ss_pred             ---------CcEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 001224         1023 ---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVP 1093 (1120)
Q Consensus      1023 ---------g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1093 (1120)
                               |.|.-+|+.+|+.+-+.......-.+         .++.   .+.++++|+.||.++.+|..+||..|+..
T Consensus       435 ~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g---------~l~T---agglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG---------TLYT---KGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB---------CEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc---------eeEe---cCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                     46778888888888765521111111         1222   25688899999999999999999888775


Q ss_pred             CC
Q 001224         1094 PP 1095 (1120)
Q Consensus      1094 ~p 1095 (1120)
                      -|
T Consensus       503 l~  504 (571)
T d2ad6a1         503 MP  504 (571)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.89  E-value=0.14  Score=54.89  Aligned_cols=247  Identities=11%  Similarity=0.043  Sum_probs=124.4

Q ss_pred             CceEEEEecCCCeEEEEEeCCC----cEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeE
Q 001224          366 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  441 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  441 (1120)
                      .+..+++|||+++++.+-+.+|    +|++.|+.+|+.+.. .+                 .  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence            3456688999998666665555    699999999987642 11                 0  1122568999999988


Q ss_pred             EEEECC----------------CeEEEEEccCCceeeeeeeeccc--ccCeEEEEEcCCCCceEEEEec-CCCcEEEE--
Q 001224          442 GVAYSR----------------HIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCG-DDKTIKVW--  500 (1120)
Q Consensus       442 as~~~d----------------g~v~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~s-~d~~i~vw--  500 (1120)
                      .-...+                ..|..|.+.+...- ....+...  ...+..+..+.+++.+++.+.. .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~-d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCccc-cccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765432                25777777765422 11123333  2346778889999963333332 23344444  


Q ss_pred             ECCCCc--------eeEEeeccccCeEEEeeccCCCceEEEEEec---CCeEEEEecCCCCCceeeeCCCCceeEEEEcC
Q 001224          501 DATNGA--------KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  569 (1120)
Q Consensus       501 d~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  569 (1120)
                      |+....        ....+......+..+..  .. +.+++....   ++.|...++.......         ....+.+
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~---------w~~vi~~  332 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESK---------WKVLVPE  332 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGG---------CEEEECC
T ss_pred             eCCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCcccc---------ceEEecc
Confidence            433221        11222222222222221  11 123332222   3455555554432110         0000111


Q ss_pred             CCCeEEecccccceeEEEEcCCCCEEEEEe-CCC--eEEEEECCCCceeEEEecCCCCCCcCeEEEcCCCCEEEEEEC--
Q 001224          570 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--  644 (1120)
Q Consensus       570 ~g~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--  644 (1120)
                               ....+..-.+...+++|+... .++  .|+++++.++..........  ..+..+...++...+.....  
T Consensus       333 ---------~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~  401 (430)
T d1qfma1         333 ---------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSF  401 (430)
T ss_dssp             ---------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECS
T ss_pred             ---------cCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCC
Confidence                     111122222222334565543 443  48889998887655543322  24444444555554443322  


Q ss_pred             --CCcEEEEEccCc
Q 001224          645 --DNGIKILATSDG  656 (1120)
Q Consensus       645 --dg~i~iwd~~~~  656 (1120)
                        -.++.-+|+.++
T Consensus       402 ~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         402 LSPGIIYHCDLTKE  415 (430)
T ss_dssp             SCCCEEEEEETTSS
T ss_pred             CCCCeEEEEECCCC
Confidence              367888888776

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.50  E-value=0.22  Score=53.32  Aligned_cols=245  Identities=15%  Similarity=0.116  Sum_probs=128.6

Q ss_pred             CCccEEEEccCCCEEEEEe--CC----cEEEEEcCCCceeee-ecCCCCCeEEEEEecCCCcEEEEEeCC----------
Q 001224          825 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD----------  887 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s--dg----~i~vwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d----------  887 (1120)
                      -.+...++|||+++++.+-  +|    .|+++|+.+++.+.. +.  ......++|++ |++.|+....+          
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            3345678899999999764  33    499999999987642 22  11235688999 66666544322          


Q ss_pred             ------CcEEEEEeecce--eeEeeccc--ccceEEEEEccCCCEEEEEe---CCCCEEEEECC--Cccccc---ceeee
Q 001224          888 ------SSIQIYNVRVDE--VKSKLKGH--SKRITGLAFSHALNVLVSSG---ADSQLCVWSSD--GWEKQK---NRFLQ  949 (1120)
Q Consensus       888 ------g~v~vwd~~~~~--~~~~l~~h--~~~V~~l~~s~d~~~l~s~s---~Dg~v~iWd~~--~~~~~~---~~~~~  949 (1120)
                            ..|+.+.+.+..  -...+...  ...+..+..+.|+++++...   .+....+|-++  ......   .....
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  257777766532  12233332  33466778899999876432   23445555443  211100   00011


Q ss_pred             ccCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceee--eccccCCCCCCeeEEEECCCCcEEEEE-EcC
Q 001224          950 IPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYAC-FLD 1022 (1120)
Q Consensus       950 ~~~~~~~~~~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~D 1022 (1120)
                      ......    .......+.++.+++..    .++.|...++......  ..+. ..+...+..-.++..+.+|+.. ..|
T Consensus       282 ~~~~~~----~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         282 LIDNFE----GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EECSSS----SCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eecccc----cceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEcC
Confidence            111110    11223333344444433    3456777776654321  2222 2344555544555555566544 455


Q ss_pred             C--cEEEEEcCCcceeeeeCCCcccCCCCCCCCccceEEEecCCCCCEEEEEeC---CCcEEEEecCCCC
Q 001224         1023 A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS---DGGVHVFEPLESE 1087 (1120)
Q Consensus      1023 g--~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~d~~~l~s~~~---Dg~v~vW~~~~~~ 1087 (1120)
                      +  .|++++..+++......    .+.+   . +.  .+...+.+..+.++.++   =.+++-+|+.+++
T Consensus       357 ~~~~l~v~~~~~~~~~~~~~----~~~~---s-v~--~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         357 VKNTLQLHDLATGALLKIFP----LEVG---S-VV--GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TEEEEEEEETTTCCEEEEEC----CCSS---E-EE--EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEeEEEEEECCCCcEEEecC----CCCc---e-Ee--eccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            4  48999999888765433    2222   1 22  34444433334433322   1678888888886

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00091  Score=49.88  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHhhcChHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHhccc
Q 001224            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGF   60 (1120)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~   60 (1120)
                      ++|+.+-|++||..+||.+++.+|.+|+++.++  ...-..-+|+-.|..++++-.++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKI   64 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV   64 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHH
Confidence            578999999999999999999999999998775  55556678888998887766554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.96  E-value=0.79  Score=46.49  Aligned_cols=200  Identities=9%  Similarity=0.140  Sum_probs=114.7

Q ss_pred             cCCCEEEEEe-CCcEEEEEcCCCceeeeecCCCCCeEEEEEec----C-CCcEEEEEe--CCC--cEEEEEeec-ceeeE
Q 001224          834 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGM--DDS--SIQIYNVRV-DEVKS  902 (1120)
Q Consensus       834 ~d~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp----~-d~~~lasg~--~dg--~v~vwd~~~-~~~~~  902 (1120)
                      |+..+++... .+.|++||+. |+.+..+.  .+.++.|..-.    . ...-+++++  .++  +|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3444555544 5569999985 77776664  35666665442    0 122344444  223  577888763 22333


Q ss_pred             eeccc-------ccceEEEEE--ccC-CC-EEEEEeCCCCEEEEECCCccc--ccceeeeccCCCCCCCCCCcEEEEccC
Q 001224          903 KLKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD  969 (1120)
Q Consensus       903 ~l~~h-------~~~V~~l~~--s~d-~~-~l~s~s~Dg~v~iWd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~fspd  969 (1120)
                      .+...       ...+..+|+  ++. |. +++....+|.+..|.+.....  .....+..+...    ..+..|++.++
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence            33221       124778887  554 44 456777889999887743221  122223333221    35789999999


Q ss_pred             CcEEEEE-eCCeEEEEEcCC-----ceeeeccccCCCCCCeeEEEEC--CCCc-EEEEEE-cCCcEEEEEcCC-cceeee
Q 001224          970 QIHFLVV-HETQLAIFETTK-----LECVKQWVPRESSAPITHATFS--CDSQ-LVYACF-LDATVCVFSAAN-LKLRCR 1038 (1120)
Q Consensus       970 g~~la~~-~d~~v~i~d~~~-----~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~-~Dg~v~iwd~~~-~~~~~~ 1038 (1120)
                      ...|.++ .+..+..+++..     ...+...........+-.|+.-  .++. ||++.+ .|.+..|||..+ .+.+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            8888887 445666666542     1222222211236678888753  3333 555444 568899999876 477766


Q ss_pred             eC
Q 001224         1039 IN 1040 (1120)
Q Consensus      1039 ~~ 1040 (1120)
                      +.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.014  Score=51.46  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccCCC
Q 001224           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD  135 (1120)
Q Consensus        65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~  135 (1120)
                      ..++.. ++|+++-+.||||+..|+..+|..|+.+.-.-+...+.+.++.|+.+....++.+++....++.
T Consensus        39 K~EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~  108 (149)
T d2nxpa1          39 RAELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT  108 (149)
T ss_dssp             HHHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCG
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhC
Confidence            336666 9999999999999999999999999998776677778899999999998888887776655543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.02  E-value=4.5  Score=42.64  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=60.6

Q ss_pred             CCccEEEEccCCCEEEEEe-CCcEEEEEcCCCceee--eec------CCCCCeEEEEEecC--CCcEEEEE-e------C
Q 001224          825 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA--TFM------PPPPAATFLAFHPQ--DNNIIAIG-M------D  886 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s-dg~i~vwd~~~~~~~~--~~~------~~~~~i~~l~~sp~--d~~~lasg-~------~  886 (1120)
                      ...++|+|.|||+++++-. .|+|++++..+++...  .+.      .-......|+|+|+  ...+|... +      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4577999999999998886 7999999987765432  211      12346789999983  12333322 1      0


Q ss_pred             C----C--cEEEEEeecce--------eeEee---cccccceEEEEEccCCCEEEEEeC
Q 001224          887 D----S--SIQIYNVRVDE--------VKSKL---KGHSKRITGLAFSHALNVLVSSGA  928 (1120)
Q Consensus       887 d----g--~v~vwd~~~~~--------~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~  928 (1120)
                      +    .  .|..+......        .+..+   ..|.  ...|.|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence            1    1  13333332211        11111   1243  468999999988887764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.94  E-value=3.5  Score=41.55  Aligned_cols=72  Identities=8%  Similarity=0.038  Sum_probs=45.6

Q ss_pred             CCccEEEEccCCCEEEEEe----C------------CcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEE-EEEeCC
Q 001224          825 EAVPCFALSKNDSYVMSAS----G------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDD  887 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~s----d------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~d  887 (1120)
                      .....+++..++.++++-.    +            +...+|....++...... .-...+.++++| |+++| ++-+..
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~-d~~~lyVa~t~~  227 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISP-DGKYVYIAELLA  227 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECT-TSSEEEEEEGGG
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECC-CCCEEEEEeCCC
Confidence            4467888888998888732    1            123445444433322222 234588999999 66555 555667


Q ss_pred             CcEEEEEeecc
Q 001224          888 SSIQIYNVRVD  898 (1120)
Q Consensus       888 g~v~vwd~~~~  898 (1120)
                      +.|++|++...
T Consensus       228 ~~i~~y~~~~~  238 (340)
T d1v04a_         228 HKIHVYEKHAN  238 (340)
T ss_dssp             TEEEEEEECTT
T ss_pred             CeEEEEEeCCC
Confidence            89999998753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.61  E-value=4.2  Score=40.94  Aligned_cols=172  Identities=14%  Similarity=0.113  Sum_probs=92.2

Q ss_pred             CceEEEEecCCCeEEEEEeC-----------CCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEE
Q 001224          366 SPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  434 (1120)
Q Consensus       366 ~v~~v~~spdg~~lla~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~  434 (1120)
                      ....|+..|||..++++|..           .|.|.++|+.+.+.... .+.+..     .......+..|  .+ ++.-
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~~~-----~~~~~~~f~Ph--Gi-~l~~  106 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIG-----NTLDISSFNPH--GI-STFI  106 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEEEC-----SSSCGGGCCEE--EE-EEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEecC-----CCCCCcceecc--ce-eEEE
Confidence            45578889999876666522           37888888876543321 111100     00000011222  12 1222


Q ss_pred             cCCCC-eEEEEE---CCCeEEEEEccCCc-eeeeeeeecc-cccCeEEEEEcCCCCceEEEEec--C-------------
Q 001224          435 SPDGS-LFGVAY---SRHIVQIYSYHGGD-EVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--D-------------  493 (1120)
Q Consensus       435 spdg~-~las~~---~dg~v~iwd~~~~~-~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~s--~-------------  493 (1120)
                      .+||+ +|++..   ...+|.+|++.... .+....++.. .....++|++..+|.  +++|-.  .             
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence            45666 355543   45679999886443 2333333332 234578999999998  677721  1             


Q ss_pred             CCcEEEEECCCCceeEEeeccccCeEEEeeccCCCceEEEEEecCCeEEEEecCCCC
Q 001224          494 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG  550 (1120)
Q Consensus       494 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  550 (1120)
                      -....+|....++...... .-..-+.++++++.+ .++++-+..+.|+.|++...+
T Consensus       185 ~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         185 LAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTS
T ss_pred             CCceeEEEEcCCceEEEcC-CCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCc
Confidence            1234555544444432223 334567788755432 344555668899999887544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.54  E-value=2.1  Score=43.19  Aligned_cols=194  Identities=11%  Similarity=0.138  Sum_probs=109.0

Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeEeecccccceEEEEEcc----C--CCEEEEEe-C-CC--CEEEEECCCcccccce
Q 001224          877 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----A--LNVLVSSG-A-DS--QLCVWSSDGWEKQKNR  946 (1120)
Q Consensus       877 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~----d--~~~l~s~s-~-Dg--~v~iWd~~~~~~~~~~  946 (1120)
                      +..+++....++-|++||+. |+.+..+.  .+.++.|..-.    +  ..-++.++ + ++  +|.+|.+.....    
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~----  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----
Confidence            34566656666679999985 77777664  34566655432    2  22344444 2 22  578888764221    


Q ss_pred             eeeccCCC----CCCCCCCcEEEE--ccC-CcEEEE--EeCCeEEEEEcC---Cc----eeeeccccCCCCCCeeEEEEC
Q 001224          947 FLQIPTGR----TPTAQSDTRVQF--HQD-QIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFS 1010 (1120)
Q Consensus       947 ~~~~~~~~----~~~~~~i~~~~f--spd-g~~la~--~~d~~v~i~d~~---~~----~~~~~~~~~~h~~~v~~l~~s 1010 (1120)
                      .+......    ......+..+|+  ++. |.+.+.  ..+|.+..|.+.   .+    +.++.+..   ...+..|.+.
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvD  188 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAAD  188 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEE
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEe
Confidence            11111111    011124667777  664 544333  367888888763   22    34455543   5678999999


Q ss_pred             CCCcEEEEEEcCCcEEEEEcCC-----cceeeeeCCCcccCCCCCCCCccceEEEecCC-CCCEEEEEeCCCcEEEEecC
Q 001224         1011 CDSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPL 1084 (1120)
Q Consensus      1011 ~dg~~l~s~~~Dg~v~iwd~~~-----~~~~~~~~~~~~~~~g~~~~~v~~~~i~~~p~-d~~~l~s~~~Dg~v~vW~~~ 1084 (1120)
                      .....|+.+-++.-|..+++..     +.++....      .++-...+--+++-..++ +|.+|+|.-.|++..||+..
T Consensus       189 de~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~------g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         189 DEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             TTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECS------SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCCcEEEecCccceEEEEeccCCCccceeeeccc------CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            9999999998887666665531     22222221      111122244334444432 34556666678899999987


Q ss_pred             CC
Q 001224         1085 ES 1086 (1120)
Q Consensus      1085 ~~ 1086 (1120)
                      ..
T Consensus       263 ~~  264 (353)
T d1h6la_         263 GQ  264 (353)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=93.14  E-value=0.029  Score=48.09  Aligned_cols=66  Identities=15%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             cccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           66 NRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        66 ~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      .++.. ++|+++-+.||||+..|+.++|..|+++.-.... ...+.++.|+.+....++.+++....+
T Consensus        22 ~EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~   87 (131)
T d2j4ba1          22 NDLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTF   87 (131)
T ss_dssp             HHHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHH
Confidence            35666 9999999999999999999999999997655443 367888899888887777765554433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=4.4  Score=39.50  Aligned_cols=222  Identities=13%  Similarity=0.099  Sum_probs=103.8

Q ss_pred             CcEEEEEcCCCce--eeeecCCCCCeEEEEEecCCCcEEEEEeC---------CCcEEEEEeecceee--Eeecccccce
Q 001224          845 GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD---------DSSIQIYNVRVDEVK--SKLKGHSKRI  911 (1120)
Q Consensus       845 g~i~vwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~---------dg~v~vwd~~~~~~~--~~l~~h~~~V  911 (1120)
                      ..+.+||..+.+-  +..+......-. ++. - ++++++.|+.         -..+.+||..+.+..  ..+......-
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~-~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLA-GCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCE-EEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeE-EEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            3588999887543  222322222222 222 2 5667776653         135678887654322  2221111111


Q ss_pred             EEEEEccCCCEEEEEeCCCC-----EEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE-e-----CCe
Q 001224          912 TGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQ  980 (1120)
Q Consensus       912 ~~l~~s~d~~~l~s~s~Dg~-----v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~-~-----d~~  980 (1120)
                      .++.  .+++.++.++.++.     ...++..+.....     .......  ..-..+... ++..++.+ .     ...
T Consensus        96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--r~~~~~~~~-~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-----VAPMLTR--RIGVGVAVL-NRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE-----CCCCSSC--CBSCEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred             eccc--cceeeEEecceecccccceeeeeccccCcccc-----ccccccc--cccceeeee-eecceEecCcccccccce
Confidence            1222  25666666655444     3446655532211     1111000  011222222 34444443 2     245


Q ss_pred             EEEEEcCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcC-----CcEEEEEcCCcceeeeeCCCcccCCCCCCCCcc
Q 001224          981 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1055 (1120)
Q Consensus       981 v~i~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 1055 (1120)
                      +..||..+.+....-.. .....-.+.+. .+++.++.|+.+     ....++|..+.+....-.    .+...    ..
T Consensus       166 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r----~~  235 (288)
T d1zgka1         166 AECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRR----SA  235 (288)
T ss_dssp             EEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCC----BS
T ss_pred             EEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCcc----cc
Confidence            88899887665433221 11111122222 245666666544     356778887766553211    11110    11


Q ss_pred             ceEEEecCCCCCEEEEEeCCCc-----EEEEecCCCCCCCCCCC
Q 001224         1056 PLVIAAHPQEPNEFALGLSDGG-----VHVFEPLESEGKWGVPP 1094 (1120)
Q Consensus      1056 ~~~i~~~p~d~~~l~s~~~Dg~-----v~vW~~~~~~~~~~~~~ 1094 (1120)
                       -+++..  ++++++.|+.++.     +.+||+.+.+  |..-.
T Consensus       236 -~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~  274 (288)
T d1zgka1         236 -LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVT  274 (288)
T ss_dssp             -CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEE
T ss_pred             -eEEEEE--CCEEEEEecCCCCeecceEEEEECCCCE--EEECC
Confidence             133333  4688888876653     7788888755  65543

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=91.02  E-value=0.037  Score=47.53  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=51.9

Q ss_pred             CcccchhhHHHHHHHHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC
Q 001224           65 DNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1120)
Q Consensus        65 ~~~~~~~~~~~i~~~~~lEll~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~  133 (1120)
                      ..++.. ++|+++-+.||||+..+. .+|..|+.+.-.-+...+.+++++|+.+....++.+++....+
T Consensus        23 K~EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~   89 (134)
T d2j49a1          23 KPELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAF   89 (134)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHH
Confidence            446666 999999999999999875 6899999977666665567778888888877777765555444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.95  E-value=5  Score=40.80  Aligned_cols=183  Identities=12%  Similarity=0.099  Sum_probs=105.4

Q ss_pred             CCccEEEEccCCCEEEEEeCCcEEEEEcCCC---------ceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001224          825 EAVPCFALSKNDSYVMSASGGKISLFNMMTF---------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  895 (1120)
Q Consensus       825 ~~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~---------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  895 (1120)
                      ....-+++++...+++.|+...+.|..+..-         .........-..|..++|+. |  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEEe
Confidence            4466788988888888888667888774311         00001111123589999985 3  35544 4566777777


Q ss_pred             ecceeeEeecccccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE
Q 001224          896 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  975 (1120)
Q Consensus       896 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~  975 (1120)
                      .+-........-..++..+.++|.  .++....++.+.++++..++....  .....+ ......+.+++|++.|+.+++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~~-~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVTS-FDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEEE-EEECSSEEEEEETTSCEEEEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcce-EEecCCceEEEEeCCcEEEEE
Confidence            653333333333456778888764  566677789999999988653211  100000 000135688889999988888


Q ss_pred             EeCCeEEEE-EcCCceeeecccc-CCCCCCeeEEEECCCCcEEEEE
Q 001224          976 VHETQLAIF-ETTKLECVKQWVP-RESSAPITHATFSCDSQLVYAC 1019 (1120)
Q Consensus       976 ~~d~~v~i~-d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~ 1019 (1120)
                      +..+...+. ++....   .+.. ......|.+|.|-.+..++++-
T Consensus       188 ~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            644433322 111111   1111 1234578999999887777654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.87  E-value=7.8  Score=34.78  Aligned_cols=207  Identities=12%  Similarity=0.148  Sum_probs=99.4

Q ss_pred             CCCeEEEEEeCCCcEEEEecCCCceeEeeceeeeccCCCCcccccccccCCCCceEEEEEcCCCCeEEEEECCCeEEEEE
Q 001224          375 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  454 (1120)
Q Consensus       375 dg~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~dg~v~iwd  454 (1120)
                      ++..|++++...|.|.++-+..++.+.-                      ...+|....- |..      +-|..+.+-|
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~-Pk~------~ldfi~f~RD   74 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLD-PHY------GVGRVILVRD   74 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECE-ECT------TBSEEEEEEE
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCC-Ccc------CcceEEEEee
Confidence            3444899999999999999998876642                      1122222111 100      0122233334


Q ss_pred             ccCCceeeeee-----------eecccc-cCeEEEEEcCCCCceEEEEecCCCcEEEEECCCCceeE--Eeecc------
Q 001224          455 YHGGDEVRQHL-----------EIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGH------  514 (1120)
Q Consensus       455 ~~~~~~~~~~~-----------~l~~h~-~~V~~v~~s~d~~~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~h------  514 (1120)
                      +..|+......           .+..-. -.|.+++  -|++. ++++|+......+|-++.|+...  .+.+.      
T Consensus        75 V~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~--yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI  151 (313)
T d2hu7a1          75 VSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGV--DTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI  151 (313)
T ss_dssp             CSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEE--ECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE
T ss_pred             hhcCcceeeEEEEccCCCCeeeEecCCceEEEEEee--ecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEec
Confidence            44333322111           122211 2344555  45666 56777777777888888776532  22221      


Q ss_pred             -ccCeEEEeeccCCCceEEEEEec-CCeEEEEecCCCCCceeeeCCCCceeE----------EEEcCCCCe---------
Q 001224          515 -EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTT----------MAYSADGTR---------  573 (1120)
Q Consensus       515 -~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~----------~~~s~~g~~---------  573 (1120)
                       ...|..+.+.. ++..-++++.. .|.+++++...+.........+..|.+          +.+.+....         
T Consensus       152 ~~d~I~G~g~~~-g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~k  230 (313)
T d2hu7a1         152 RGDLIAGLGFFG-GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSK  230 (313)
T ss_dssp             ETTEEEEEEEEE-TTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSC
T ss_pred             cCCeEEEEeeec-CCcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcc
Confidence             12333443322 22233555554 788888866543322222222222211          112221110         


Q ss_pred             EEecccccceeEEEEcCCCCEEEEEeCCCeEEEEECCCCceeE
Q 001224          574 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT  616 (1120)
Q Consensus       574 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  616 (1120)
                      -+.......+.-+-+.|+++.++.+-.||.-+++.  +|+.+.
T Consensus       231 d~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         231 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             cceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            00011112333355778888777788888877776  454443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.45  E-value=11  Score=33.81  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=98.1

Q ss_pred             EEEEEcCCCceeeeecCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeE--eeccc-------ccceEEEEE
Q 001224          847 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF  916 (1120)
Q Consensus       847 i~vwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~~h-------~~~V~~l~~  916 (1120)
                      |.+-+++..-.-..+.... -.|.++++  +|.+.+.+|+....+.+|-++.|++..  .+.+.       .+-|..+.+
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            5555655222222333222 23555555  378888999998999999999886532  22221       123444433


Q ss_pred             c-cCCCEEEEEeC-CCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCce
Q 001224          917 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLE  990 (1120)
Q Consensus       917 s-~d~~~l~s~s~-Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~~----~d~~v~i~d~~~~~  990 (1120)
                      - +..+-+.++.- .|.++|++-..                   ++++....+++.+. ++.    .+.....+|.+.++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpke-------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGE-------------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSS-------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCC-------------------CcccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence            2 23233445544 56666666554                   24566666777766 443    22233356887665


Q ss_pred             eeeccccCC-----CCCCeeEEEECCCCcEEEEEEcCCcEEEEEcCCcceeee
Q 001224          991 CVKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1038 (1120)
Q Consensus       991 ~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~Dg~v~iwd~~~~~~~~~ 1038 (1120)
                      ..+.-.+..     -.-.|+-+-+.||+++++.+-.||.-++|.  +|+.+..
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            443322110     144566777999999999999999999987  6676643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.43  E-value=5.9  Score=41.71  Aligned_cols=114  Identities=8%  Similarity=0.047  Sum_probs=62.1

Q ss_pred             ccceEEEEEccCCCEEEEEeCCCCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccC---CcEEEEE---e----
Q 001224          908 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---QIHFLVV---H----  977 (1120)
Q Consensus       908 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspd---g~~la~~---~----  977 (1120)
                      -..-++|+|.|||++|++--..|.|++++..+++.....-+...............++|+|+   ..++..+   .    
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            34678999999999998875678999998777654221111111111112245678999985   3344331   1    


Q ss_pred             -C----C--eEEEEEcCCce-------eeeccccCCCCCCeeEEEECCCCcEEEEEEc
Q 001224          978 -E----T--QLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFL 1021 (1120)
Q Consensus       978 -d----~--~v~i~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1021 (1120)
                       +    .  .+..+......       .+..............|.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             0    1  13333322211       1111111111234578999999987776663

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=13  Score=35.73  Aligned_cols=175  Identities=12%  Similarity=0.038  Sum_probs=79.7

Q ss_pred             cEEEEEcCCCceeee--ecCCCCCeEEEEEecCCCcEEEEEeCCCcE-----EEEEeecceeeEee--cccccceEEEEE
Q 001224          846 KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSI-----QIYNVRVDEVKSKL--KGHSKRITGLAF  916 (1120)
Q Consensus       846 ~i~vwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v-----~vwd~~~~~~~~~l--~~h~~~V~~l~~  916 (1120)
                      .+.+||..+.+....  +........++.  . ++++++.|+.++..     ..++..+..-...-  ........ +..
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~--~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~  146 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGV--I-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAV  146 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEE--E-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEE
T ss_pred             hhhhcccccccccccccccceecceeccc--c-ceeeEEecceecccccceeeeeccccCccccccccccccccce-eee
Confidence            478888776443221  111111122222  2 56677766655543     34555443322111  11111111 122


Q ss_pred             ccCCCEEEEEeCC-----CCEEEEECCCcccccceeeeccCCCCCCCCCCcEEEEccCCcEEEE-EeC-----CeEEEEE
Q 001224          917 SHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE-----TQLAIFE  985 (1120)
Q Consensus       917 s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fspdg~~la~-~~d-----~~v~i~d  985 (1120)
                       .++..++.|+.+     ..+..||..+.+....   .....  .  ......+. .+++.++. +.+     .....||
T Consensus       147 -~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~~--~--~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         147 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNT--I--RSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSS--C--CBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             -eeecceEecCcccccccceEEEeeccccccccc---ccccc--c--cccccccc-eeeeEEEecCccccccccceeeee
Confidence             244555566554     3467788766432211   11100  0  11122222 33444444 322     3577888


Q ss_pred             cCCceeeeccccCCCCCCeeEEEECCCCcEEEEEEcCC-----cEEEEEcCCcce
Q 001224          986 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKL 1035 (1120)
Q Consensus       986 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~iwd~~~~~~ 1035 (1120)
                      ..+.+....-.. .....-.+++. .++++++.|+.++     .|.+||+.+.+-
T Consensus       218 ~~~~~~~~~~~~-p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         218 VETETWTFVAPM-KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ecceeeecccCc-cCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            877665443221 11111123332 3788888887654     388999987654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.62  E-value=10  Score=38.43  Aligned_cols=97  Identities=7%  Similarity=0.031  Sum_probs=65.5

Q ss_pred             CccEEEEccCCCEEEEEeCCcEEEEEcCCCceeeeecCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEeecceeeEeec
Q 001224          826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  905 (1120)
Q Consensus       826 ~v~~l~~s~d~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  905 (1120)
                      .|..++|+.|  .+++..++.+..++..+............++..+.++| .  .++....+|.+.++++..++......
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence            5788899755  57777778888888876544444444455688888877 3  45666778999999988765332211


Q ss_pred             c-----cccceEEEEEccCCCEEEEEe
Q 001224          906 G-----HSKRITGLAFSHALNVLVSSG  927 (1120)
Q Consensus       906 ~-----h~~~V~~l~~s~d~~~l~s~s  927 (1120)
                      +     -.+.+.+++|++.|+.++++.
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeC
Confidence            1     125577788887777777664