Citrus Sinensis ID: 001228
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1119 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC87 | 1453 | ABC transporter G family | yes | no | 0.974 | 0.750 | 0.713 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | no | no | 0.981 | 0.755 | 0.702 | 0.0 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.972 | 0.744 | 0.699 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.955 | 0.745 | 0.639 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.967 | 0.75 | 0.623 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.957 | 0.743 | 0.642 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.952 | 0.728 | 0.630 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.955 | 0.737 | 0.614 | 0.0 | |
| Q8GU86 | 1454 | Pleiotropic drug resistan | no | no | 0.975 | 0.751 | 0.605 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.956 | 0.734 | 0.630 | 0.0 |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1663 bits (4307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 787/1103 (71%), Positives = 936/1103 (84%), Gaps = 12/1103 (1%)
Query: 7 DDLARSFSVRGGQSISSGSRRSWASA---SIREVWNAP-DNVFSRSER-QDDEEELRWAA 61
+DL R+ S RG S+ S S RS A A S R+V+ P D+VF RS+R ++D+ ELRWAA
Sbjct: 6 EDLVRTMSGRG--SLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAA 63
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ERLPTYDRL+KGML Q + +GK+ +VDV+NLA ++KK L+E ILK VEEDNEKFL+R
Sbjct: 64 LERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRR 123
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+R RTDRVGIE+PKIEVRY++LSVEGDV +RALPTL NV LN +ES LGL HL+PSKK
Sbjct: 124 LRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKK 183
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R + ILKD+SGI+KPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGHE EF
Sbjct: 184 RKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREF 243
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
VPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTRY+LL ELSRRE++AGIKPDPEID
Sbjct: 244 VPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEID 303
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
AFMK++A++GQETSLVTDYVLK+LGLDICADT+VGD MRRGISGGQ+KR+TTGEMLVG A
Sbjct: 304 AFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPA 363
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
L+MDEISTGLDSSTTFQICKF++Q+VHI DVTM+++LLQPAPET++LFDDIILLSEGQ
Sbjct: 364 TALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQ 423
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 481
IVYQG RDNVLEFFE+MGFKCPERKG+ADFLQEVTSKKDQEQYW R+ PY Y+ V DF
Sbjct: 424 IVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFS 483
Query: 482 EGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFV 541
GF SFH GQQ+AS+ RVPYDK++ HPA+LV +KYGIS +LF+ACF REWLLMKRNSFV
Sbjct: 484 SGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFV 543
Query: 542 YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLR 601
Y+FKT Q+T MSLI MTVYFRTEM VG + G +++GALFFSL+N+MFNG AE A TV+R
Sbjct: 544 YVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMR 603
Query: 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLA 661
LP+F+KQRD LFYP WAFALP +LL+IP+S+++S IW+ALTYYTIG+ P+A+RFF+Q LA
Sbjct: 604 LPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLA 663
Query: 662 FFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYIS 721
+F ++ M+L L+R + A+GRTEVI+N+ GT LL++ LGGF+++KDDI +L W YY S
Sbjct: 664 YFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTS 723
Query: 722 PMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGY 781
PMMYGQT+L++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +GAL G+
Sbjct: 724 PMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGF 783
Query: 782 SFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNV 841
+ LFNF +I AL YLNP+G+S +T + E+G+ + H G + +S+ + G
Sbjct: 784 TVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHGP---- 839
Query: 842 TNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGV 901
+GM+LPFQPLSL F+N++Y+VDMPAEMK +GV DRLQLL V G FRPGVLTAL+GV
Sbjct: 840 -KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGV 898
Query: 902 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961
SGAGKTTLMDVLAGRKTGGY+EG I ISGYPKNQ TFARVSGYCEQNDIHSP+VTVYESL
Sbjct: 899 SGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL 958
Query: 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021
+YSAWLRLS+D+DTK R+MFV+EVMELVELK L +S+VGLPGV GLSTEQRKRLTIAVEL
Sbjct: 959 IYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVEL 1018
Query: 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDELLL+K
Sbjct: 1019 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMK 1078
Query: 1082 RGGRVIYAGPLGHESHKLIEYFE 1104
RGG+VIYAG LGH S KL+EYFE
Sbjct: 1079 RGGQVIYAGTLGHHSQKLVEYFE 1101
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1650 bits (4273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1108 (70%), Positives = 929/1108 (83%), Gaps = 10/1108 (0%)
Query: 1 MSATVADDLARSFSVRGGQSISSGSRRSW--ASASIREVW-NAPDNVFSRSER-QDDEEE 56
M+A + D ++ G S++S S RS AS S R+V+ D VF RSER ++D+ E
Sbjct: 1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60
Query: 57 LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNE 116
LRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DKK L+E IL VEEDNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 117 KFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176
KFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL NV LN LES LG HL
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
E EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+L++ELSRREK+ GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
DP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MRRGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++LLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 476
LSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKDQEQYW ++ QPY Y+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 477 VSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMK 536
VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS WELF+ACF REWLLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 537 RNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENA 596
RNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+FFSL+N+MFNG AE A
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 597 MTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656
TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+ LTYYTIG+ P+A+RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRW 716
+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +LGGF++AKDDI P++ W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 717 GYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVG 776
YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 777 ALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVG 836
AL G+S LFN +I AL YLNP+G+S +TV+EE +KQ+ EG + + SSS
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSS---- 836
Query: 837 AAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896
RGM+LPFQPLSL F+N++Y+VDMP+EMK +GV DRLQLL V G FRPG+LT
Sbjct: 837 --NKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILT 894
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFARVSGYCEQNDIHSP+VT
Sbjct: 895 ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVT 954
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
VYESL+YSAWLRLS+D+D K R++FV+EVMELVELK L +S+VGLPGV GLSTEQRKRLT
Sbjct: 955 VYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLT 1014
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1015 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 1074
Query: 1077 LLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
LLL+KRGG+VIYAG LGH S KL+EYFE
Sbjct: 1075 LLLMKRGGQVIYAGSLGHHSQKLVEYFE 1102
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1627 bits (4214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1109 (69%), Positives = 928/1109 (83%), Gaps = 21/1109 (1%)
Query: 21 ISSGSR-RSW-ASASIREVWNAPDNVFS-------RSERQDDEEELRWAAIERLPTYDRL 71
+ S SR SW +S SIREV+ +VF R +++E+EL+WAAI+RLPTY+RL
Sbjct: 13 LRSNSRMSSWRSSQSIREVFGGSSDVFMKNYSTRWREMAEEEEKELKWAAIDRLPTYNRL 72
Query: 72 KKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI 131
+KGM+ +V+ +G+VV HEVD++ L QDKK L+ESILK+VE+DNE+FL+R+R+RTDRVGI
Sbjct: 73 RKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGI 132
Query: 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191
EIPKIEVR+ +LSV GD +VGTRALPTLLN LN +E+ LGL+HL PSKKR V+IL+DVS
Sbjct: 133 EIPKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLIHLSPSKKRVVKILEDVS 192
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
GI++PSRMTLLLGPPG+GKTT + ALAGK KDLR +GKITYCGHE +EFVPQRT AYIS
Sbjct: 193 GIIRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRVNGKITYCGHEFHEFVPQRTSAYIS 252
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLHHGEMTVRETLDF+GRCLGVGTRY+LL ELSRREK+AGI PDP+IDAFMKA A+ G
Sbjct: 253 QHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGIMPDPQIDAFMKATAIDG 312
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QETSL+TDYVLKILGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG A +MDEIS
Sbjct: 313 QETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKAFFMDEISK 372
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
GLDSSTT+QI KF++QMVHI D+TM+++LLQPAPET+DLFDD+I+LSEGQIVYQGPR+NV
Sbjct: 373 GLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVIVLSEGQIVYQGPRENV 432
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE+MGF+CPERK +ADFL EVTSKKDQEQYWFRK++PY YI V +F E F SF +G+
Sbjct: 433 LEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVYISVPEFSESFNSFQIGE 492
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
QI +L +PYDK H A+LVK KYGIS WELF++CF REWLLMKR+SF+YIFKT Q+T
Sbjct: 493 QIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLLMKRSSFLYIFKTTQITI 552
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
M+ I +TV+ RT+M G + ++++GALFFSL+N+MFNG E AMTV RLP+F+KQR+
Sbjct: 553 MATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQELAMTVFRLPVFFKQRNS 612
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYP+WAFALPIW+L+IPIS+++S IW+ LTYYTIG+ PAASRFFKQ LAF +H M+L
Sbjct: 613 LFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRFFKQLLAFIGVHQMALS 672
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AA GRT+V++NTLGTF LL++ LGGF+++KDDI+ ++ WGYY+SPMMYGQ ++
Sbjct: 673 LFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSPMMYGQNAIA 732
Query: 732 VNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791
+NEFL RW A +QPT+GK LL RG T +WYWI +GAL G+S LFN LFIA
Sbjct: 733 INEFLDDRWSAPTNG---SQPTVGKTLLHARGLFTTESWYWISIGALFGFSLLFNVLFIA 789
Query: 792 ALAYLNPIGDSNSTVIEEDGEKQRASGHEAE---GMQMA-VRSSSKT---VGAAQNVTNR 844
AL +LNPIGD+ + + E+G+K E +QMA RS + T + N + +
Sbjct: 790 ALTFLNPIGDTKAVKV-ENGDKNNRRPQETAIVGDIQMAPTRSQANTSSVIPFPNNESRK 848
Query: 845 GMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGA 904
GMILPFQPLSL F++++Y+VDMPAEMKT+GV E+RLQLL SG FRPG+LTAL+GVSGA
Sbjct: 849 GMILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASGAFRPGILTALVGVSGA 908
Query: 905 GKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
GKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFARVSGYCEQNDIHSPYVTVYESLLYS
Sbjct: 909 GKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLYS 968
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
AWLRL+SDV T+ RKMFV+EVMELVELK L +++VGLPGV GLSTEQRKRLT AVELVAN
Sbjct: 969 AWLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPGVDGLSTEQRKRLTTAVELVAN 1028
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
PSIIFMDEPTSGLDARAAAIVMRTVR TVDTGRTVVCTIHQPSIDIFEAFDELLL+K GG
Sbjct: 1029 PSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKIGG 1088
Query: 1085 RVIYAGPLGHESHKLIEYFEVSIPFFPAL 1113
+VIYAGPLGH SHKL+EYFE +IP P +
Sbjct: 1089 QVIYAGPLGHRSHKLVEYFE-TIPGVPKI 1116
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1442 bits (3734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1083 (63%), Positives = 858/1083 (79%), Gaps = 14/1083 (1%)
Query: 24 GSRRSWASASIREVW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLE 81
GS R A+ +W N +FSRS R +DDEE L+WAA+E+LPT+DRL+KG+L
Sbjct: 16 GSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLF---- 71
Query: 82 DGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
+ EVD+++L Q++K LLE ++K+ +EDNEKFL ++++R DRVGI++P IEVRY+
Sbjct: 72 GSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYE 131
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
HL+++ D +VG+R+LPT +N N +E+ L LH++ S+KR + ILKD+SGI+KP RMTL
Sbjct: 132 HLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTL 191
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPP +GKTTL+LALAGKL L+ +GK++Y GHEL+EFVPQRT AYISQHDLH GEMT
Sbjct: 192 LLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMT 251
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL+FS RC GVG+R+E+LAELSRREK A IKPD +ID +MKA A GQE ++VTDYV
Sbjct: 252 VRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYV 311
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADTMVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+ I
Sbjct: 312 LKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSI 371
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q V IL T +++LLQPAPETY+LFDDIILLS+G IVYQGPRD+VLEFFE MGFK
Sbjct: 372 VNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFK 431
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP+RKGVADFLQEVTSKKDQ+QYW ++N+PYR+I +F E ++SFH+G+++ +L P+
Sbjct: 432 CPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPF 491
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
DK++ HPA+L EKYGI K EL + C RE LLMKRNSFVY+FK QLT M+LI MT++F
Sbjct: 492 DKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFF 551
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RTEM + G Y GALFF ++ IMFNG +E AMT+ +LP+FYKQRD LF+PSWA+A+
Sbjct: 552 RTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAI 611
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IP+++++ +WV LTYY IG+DP +RF KQFL ++ M+ ++R + AVGR
Sbjct: 612 PSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGR 671
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
T +++T G+F LL+ +LGGFV+++DD++ + WGY+ISPMMY S+LVNEF G +W+
Sbjct: 672 TMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWN 731
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
+ P N+ T+G ++K RGF E+ WYWIGVGAL G++ +FNF + ALAYLNP D
Sbjct: 732 --HIVPGGNE-TLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPF-D 787
Query: 802 SNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMS 861
V+ EDGE A E Q+ ++ +QN +GM+LPF+P S+TFD++
Sbjct: 788 KPQAVLPEDGEN--AENGEVSS-QITSTDGGDSISESQN-NKKGMVLPFEPHSITFDDVV 843
Query: 862 YFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 921
Y VDMP EMK +G GEDRL LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 844 YSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 903
Query: 922 IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF 981
I+G+IKISGYPK QETFAR+SGYCEQNDIHSPYVTVYESL+YSAWLRL DVD K RKMF
Sbjct: 904 IDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMF 963
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
VDEVMELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 964 VDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1023
Query: 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIE 1101
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG S LI+
Sbjct: 1024 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIK 1083
Query: 1102 YFE 1104
YFE
Sbjct: 1084 YFE 1086
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1431 bits (3704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/1108 (62%), Positives = 856/1108 (77%), Gaps = 25/1108 (2%)
Query: 8 DLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQ-DDEEELRWAAIERLP 66
D+ R SV G + SW S R + F RS R+ DDEE L+WAAIE+LP
Sbjct: 2 DIVRMGSVASGGGSVRRTASSWRGTSGR------SDAFGRSVREEDDEEALKWAAIEKLP 55
Query: 67 TYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRT 126
TYDR++KG+L G V EVD+ L +Q+++ L+E +++ EEDNE+FL ++R R
Sbjct: 56 TYDRMRKGILTA----GGV--EEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRM 109
Query: 127 DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRI 186
+RVGI+ P IEVR+++LS++ + +VG R +PT N N + L + +V S KR + I
Sbjct: 110 ERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISI 169
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+SGI++P RM+LLLGPPG+GKT+L+LALAGKL L+ SG++TY GH+++EFVPQRT
Sbjct: 170 LHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRT 229
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
AYI QHDLH GEMTVRETL FS RC GVGTRY++L ELSRREK+A IKPDP+ID +MKA
Sbjct: 230 SAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKA 289
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
++V GQE S+VTDY+LKILGL+ICADTMVGD M RGISGGQKKRVTTGEMLVG A L+M
Sbjct: 290 ISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFM 348
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
DEISTGLDSSTT+QI L+Q VHIL T ++ALLQPAPETYDLFDDI+LLSEGQIVYQG
Sbjct: 349 DEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQG 408
Query: 427 PRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKS 486
PR+N+LEFFE MGFKCPERKGVADFLQEVTS+KDQ QYW R+++PYRYI V+DF E FK
Sbjct: 409 PRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKE 468
Query: 487 FHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKT 546
FH+G+ + S+LRVP+D+++ HPA+L +YGISK EL +ACF+REWLLMKRNSFVYIFK
Sbjct: 469 FHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKI 528
Query: 547 FQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFY 606
QL + I MTV+ RT+M + G+ + GA+F L+ +FNGFAE AM++ +LPIFY
Sbjct: 529 LQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFY 588
Query: 607 KQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIH 666
KQRD LFYPSWA+ALP W+L+IPIS L+ +W+ +TYY +G+DP RFF+ ++ I
Sbjct: 589 KQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLIS 648
Query: 667 NMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYG 726
M+ L+RL+AA+GR V+++T G+F LI++ LGGF++++++I+ + WGY+ SP+MY
Sbjct: 649 QMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYA 708
Query: 727 QTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFN 786
Q ++ VNEFLG W+ + DP+ + T+G +LK+RG ++NWYWIGVGAL GY LFN
Sbjct: 709 QNAIAVNEFLGHSWN-KVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFN 767
Query: 787 FLFIAALAYLNPIGDSNSTVIEEDGEKQRA--SGHEAEGMQMAVRSSSKTVGA------- 837
LFI L +L+P+G + V EE+ ++ +G E + + S + A
Sbjct: 768 ILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEI 827
Query: 838 -AQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896
+ RGM+LPF PLS+TFDN+ Y VDMP EMK +GV EDRL LL VSG FRPGVLT
Sbjct: 828 TGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLT 887
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
ALMGVSGAGKTTLMDVLAGRKTGGYIEGDI ISGYPK QETFAR++GYCEQNDIHSP+VT
Sbjct: 888 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVT 947
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
VYESLLYSAWLRL S+VD++ RKMFV+EVMELVEL SL ++VGLPGV+GLSTEQRKRLT
Sbjct: 948 VYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLT 1007
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 1008 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1067
Query: 1077 LLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
L L+KRGG IY GPLGH S LI YFE
Sbjct: 1068 LFLMKRGGEEIYVGPLGHNSCHLINYFE 1095
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1093 (64%), Positives = 856/1093 (78%), Gaps = 21/1093 (1%)
Query: 24 GSRRSWASASIRE---VWNAPD--NVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLN 77
GS R S+R W +P +VF RS R+ DDEE L+WAA+E+LPTYDRL+KG++
Sbjct: 9 GSLRGSLQGSLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMT 68
Query: 78 QVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIE 137
DG ++ EVD+ L Q++K LLE +++ EEDNE+FL ++R+R +RVGI+ P IE
Sbjct: 69 G---DGGEIQ-EVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIE 124
Query: 138 VRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPS 197
VR++HL++ + VG R +PTL+N +N L LHL+PS KR + IL DVSGI+KP
Sbjct: 125 VRFEHLNINAEAFVGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPC 184
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257
RMTLLLGPPGAGKTTL+LALAGKL L+ +G +TY GH ++EFVPQRT AYISQHD+H
Sbjct: 185 RMTLLLGPPGAGKTTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHI 244
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
GEMTVRETL FS RC GVGTRYE+L ELSRREK+A IKPDP++D +MKAVAV GQE S+V
Sbjct: 245 GEMTVRETLAFSSRCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQE-SVV 303
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
TDY+LKILGLDICADTMVGD M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSST
Sbjct: 304 TDYILKILGLDICADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSST 363
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
TFQI L+Q VHIL T ++ALLQPAPETYDLFDDI+LLS+GQIVYQGPR+NVLEFFE
Sbjct: 364 TFQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFES 423
Query: 438 MGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
MGFKCPERKGVADFLQEVTS+KDQ+QYW R+N+PYR++PV++F E FKSFH+G ++ +L
Sbjct: 424 MGFKCPERKGVADFLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEEL 483
Query: 498 RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICM 557
P+D+S+ HPA+L KYGISK EL +AC REWLLMKRNSFVYIFK QL ++LI M
Sbjct: 484 STPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAM 543
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSW 617
TV+FRT++ + + +FGA+F L+ +FNGFAE AM++ +LP+FYKQRD LFYP W
Sbjct: 544 TVFFRTKLPRNGLEDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPW 603
Query: 618 AFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA 677
A+ALP W+L+IPIS ++ +W+A+TYY IG+DP R F+ +L I ++ L+RL+A
Sbjct: 604 AYALPTWILKIPISFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLA 663
Query: 678 AVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLG 737
AVGR V+++T G F L+++ LGGF++A++ I+ F WGY+ SP+MY Q ++ VNEFLG
Sbjct: 664 AVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLG 723
Query: 738 GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797
W NK T+G+ L+ RG + NWYWIGVGAL GY LFNFLFI L +L+
Sbjct: 724 HSW---NKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLD 780
Query: 798 PIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTV-GAAQNV-----TNRGMILPFQ 851
P+G +TV EE +++ A+ +++A R S+ T G + + +GM+LPF
Sbjct: 781 PLGKGQTTVSEEALQEKEAN-RTGANVELATRGSAATSDGGSVEIRKDGNRKKGMVLPFT 839
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
PLS+TFDN+ Y VDMP EMK GV ED+L LL VSG FRPGVLTALMGVSG GKTTLMD
Sbjct: 840 PLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMD 899
Query: 912 VLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
VLAGRKTGGYIEGDI+ISGYPKNQETFAR+SGYCEQNDIHSP+VTVYESLLYSAWLRL +
Sbjct: 900 VLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPA 959
Query: 972 DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
+VD K+RKMFVDEVM+LVEL SL S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 960 EVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1019
Query: 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
EPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG IY GP
Sbjct: 1020 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1079
Query: 1092 LGHESHKLIEYFE 1104
LG +S LI+YFE
Sbjct: 1080 LGRQSSHLIKYFE 1092
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/1088 (63%), Positives = 852/1088 (78%), Gaps = 22/1088 (2%)
Query: 38 WNAPDNVFSRS-------ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVV---K 87
W+A + VFSRS + +DDEE LRWAA+E+LPTYDR+++ +L V E G K
Sbjct: 30 WSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGK 89
Query: 88 HEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEG 147
VDV +L Q+++ LLE ++++ E+DNE+FL +++ R DRVGI+IP IEVR++HL E
Sbjct: 90 KVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEA 149
Query: 148 DVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPG 207
+V VG LPT+LN N LE A L ++P+KK+++ IL DVSGIVKP RMTLLLGPPG
Sbjct: 150 EVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPG 209
Query: 208 AGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267
+GKTTL+LALAG+LGKD++ SG++TY GH++ +FVPQRT AYISQHDLH GEMTVRETL
Sbjct: 210 SGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLS 269
Query: 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327
FS RC GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQET+L+TDY+LKILGL
Sbjct: 270 FSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGL 329
Query: 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387
DICADTMVGD+M RGISGGQ+KRVTTGEMLVG AN L+MDEISTGLDSSTTFQI K L+Q
Sbjct: 330 DICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQ 389
Query: 388 MVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKG 447
+HIL T +++LLQPAPETYDLFDDIILLS+GQIVYQGPR+ VLEFFE MGFKCPERKG
Sbjct: 390 AIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKG 449
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAH 507
VADFLQEVTS+KDQ+QYW + ++PYRY+PV DF F+SFH G+ IA++L P+DKS+ H
Sbjct: 450 VADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNH 509
Query: 508 PASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567
PA+L +YG+S EL +A RE+LLMKRNSFVYIF+ QL +S I MTV+FRT+M
Sbjct: 510 PAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHR 569
Query: 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLR 627
+ G + GALFFS++ IMFNG +E +T+ +LP+F+KQRD LF+P+W + +P W+L+
Sbjct: 570 DSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILK 629
Query: 628 IPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISN 687
IP+S ++ +V ++YY IG+DP+A RFFKQ+L +I+ M+ L+R V R +++N
Sbjct: 630 IPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVAN 689
Query: 688 TLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDP 747
G+F+LLI M LGGF++ ++ ++ + WGY+ISPMMY Q ++ VNEFLG WD + +
Sbjct: 690 VFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWD-KVLNN 748
Query: 748 SINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807
S++ T+G L+ RG E+ WYWIG GAL G+ LFN LF AL YL P G S +V
Sbjct: 749 SLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVS 808
Query: 808 EEDGEKQRASGH--------EAEGMQMAVRSSSKT---VGAAQNVTNRGMILPFQPLSLT 856
EE+ ++++A+ + A +A+ +++T + T RGM+LPF PLSLT
Sbjct: 809 EEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSLT 868
Query: 857 FDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916
FDN+ Y VDMP EMK G+ EDRL+LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
KTGGYIEG+I ISGYPK QETFARVSGYCEQNDIHSP VTV ESLL+SAWLRL DVD+
Sbjct: 929 KTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSN 988
Query: 977 KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
RKMF++EVMELVELK L D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 TRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG IY GPLGH+S
Sbjct: 1049 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQS 1108
Query: 1097 HKLIEYFE 1104
+LI+YFE
Sbjct: 1109 SELIKYFE 1116
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1097 (61%), Positives = 854/1097 (77%), Gaps = 28/1097 (2%)
Query: 32 ASIRE---VWNAPDNVFSRS-----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
AS+R +W + +VFSRS + DDEE LRWAA+ERLPTYDR+++G+L EDG
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 84 KV--VKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
K EVDV L ++ + L+E +++ ++D+E+FL ++R R DRVGI+ P IEVR++
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
+L VE DVHVG R LPTLLN N +E+ LH++P+KK+ + +L DVSGI+KP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPPG+GKTTL+LALAGKL KDL+ SGK+TY GH ++EFVP+RT AYISQHDLH GEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL FS RC GVGTRYE+L EL+RREK A IKPD +ID +MKA A+ GQE+S+VTDY+
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADT+VG+EM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q +HIL T +++LLQPAPETY+LFDDIILLS+GQ+VYQGPR++VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP RKGVADFLQEVTS+KDQ QYW R+++PYR++PV F + F+SFH+G+ I ++L P+
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
D++++HPA+L KYG+S+ EL +A RE LLMKRN+F+YIFK LT M+LI MT +F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RT M D + G Y GAL+F+L +MFNGFAE AMTV++LP+F+KQRD LF+P+WA+ +
Sbjct: 549 RTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IPI+ L+ ++V +TYY IG+DP+ SRFFKQ+L +++ MS L+R +A +GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
V+S+T G LL +LGGF++A+ D++ + WGY+ISP+ Y Q ++ NEFLG W
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
++ T+G +LK RG TE+ WYWIG+GAL GY+ LFN L+ AL+ L+P D
Sbjct: 728 QILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 802 SNSTVIEE--------------DGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMI 847
S++++ E+ +G+K S + + +S A + + +GM+
Sbjct: 785 SHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMV 844
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
LPF PLS++F+++ Y VDMP MK +G+ EDRL LL VSG FRPGVLTALMGVSGAGKT
Sbjct: 845 LPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKT 904
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967
TLMDVLAGRKTGGYIEGDI+ISGYPK QETFAR+SGYCEQNDIHSP+VTVYESL++SAWL
Sbjct: 905 TLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWL 964
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027
RL S+VD++ RKMF++EVM+LVEL SL ++VGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 965 RLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1024
Query: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGG I
Sbjct: 1025 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1084
Query: 1088 YAGPLGHESHKLIEYFE 1104
Y GP+G S KLIEYFE
Sbjct: 1085 YVGPVGQNSSKLIEYFE 1101
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU86|PDR5_ORYSJ Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1115 (60%), Positives = 857/1115 (76%), Gaps = 23/1115 (2%)
Query: 17 GGQSISSGSRRSWAS---ASIREVWNAPDNVFSRS------ERQDDEEELRWAAIERLPT 67
G+ SGSRRSW S AS+ D+ F RS + DDEE LRWAA+E+LPT
Sbjct: 2 AGEITPSGSRRSWLSSGAASLARSLRDGDDPFRRSAAASRRDAGDDEENLRWAALEKLPT 61
Query: 68 YDRLKKGMLNQVLEDGKVV--------KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFL 119
YDR+++G+L + ++ G EVD++NL ++ + L+E + K VE+DNE+FL
Sbjct: 62 YDRMRRGILRKAVDGGGDGEGAGSLFKADEVDIANLDPREGRELMERVFKAVEDDNERFL 121
Query: 120 KRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179
+R R R D+VGIE+PKIEVRY HL +E DVHVG RALPTLLN +N LE + L + S
Sbjct: 122 RRFRDRLDQVGIELPKIEVRYQHLDIEADVHVGKRALPTLLNATINTLEGLVSLF--ISS 179
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KR ++IL DV+GI+KPSRMTLLLGPP +GK+TLM AL GK K+L+ SG+ITYCGH
Sbjct: 180 NKRKLKILNDVNGIIKPSRMTLLLGPPSSGKSTLMRALTGKPDKNLKVSGEITYCGHTFK 239
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
EF P+RT AY+SQHDLH+ EMTVRETLDFS RCLG G RY++L+EL+RRE+ AGIKPDPE
Sbjct: 240 EFYPERTSAYVSQHDLHNPEMTVRETLDFSRRCLGSGARYDMLSELTRRERNAGIKPDPE 299
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
IDA MKA V G++ ++VTD VLK LGLDICADT+VG M RGISGGQKKRVTTGEML G
Sbjct: 300 IDALMKATVVEGKQNNIVTDLVLKALGLDICADTIVGGAMIRGISGGQKKRVTTGEMLTG 359
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
A L+MDEISTGLDSS+TFQI K+++Q+ H+++ T++++LLQP PETY LFDDI+L++E
Sbjct: 360 PATALFMDEISTGLDSSSTFQIVKYIRQVTHVMNATVMMSLLQPPPETYALFDDIVLIAE 419
Query: 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSD 479
G IVY GPR+N+LEFFE GF+CPERKGVADFLQEVTS+KDQ+QYWF + YRY+ V +
Sbjct: 420 GYIVYHGPRENILEFFESAGFRCPERKGVADFLQEVTSRKDQQQYWFLEQDHYRYVSVEE 479
Query: 480 FVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNS 539
F + FK FH+GQ++ +L+VPYDKS+ HPA+L +KYG+S E +A +REWLLMKRNS
Sbjct: 480 FAQNFKKFHVGQKLQKELQVPYDKSKTHPAALTTKKYGLSSLESLKAVMSREWLLMKRNS 539
Query: 540 FVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTV 599
F++IFK FQL + I MT++ RT+M + S+Y GAL SL+ IMFNGF E +T+
Sbjct: 540 FLFIFKAFQLFVLGFITMTLFLRTKMPHEKFSDTSKYVGALTASLITIMFNGFGELQLTI 599
Query: 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659
+LPIFYKQRD LF+P+W + L +L++P+S+++S++W+ LTYY +G+ PAA RFFKQF
Sbjct: 600 DKLPIFYKQRDFLFFPAWTYGLANIILKVPLSLMESSLWIVLTYYVVGFAPAAGRFFKQF 659
Query: 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYY 719
LA+F H M+L L+RL+ A+ R+ V++NT G F+LL++ GGF++++ DI+P+ WGY+
Sbjct: 660 LAYFWTHQMALALFRLLGAILRSMVVANTFGMFVLLLIFLFGGFLVSRKDIKPWWIWGYW 719
Query: 720 ISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALT 779
SPMMY +L VNEFL RW N D SI+ PTIGK L+ +G+ T YW+ +GA+
Sbjct: 720 TSPMMYSNNALSVNEFLASRWAIPNNDSSISAPTIGKAFLQSKGYFTGEWGYWLSIGAMI 779
Query: 780 GYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQ 839
G+ +FN L++ AL +L PIG +++ V ++D + + + E M + ++ G
Sbjct: 780 GFMIVFNILYLCALTFLRPIGSASTVVSDDDTKSELEAESNQEQMSEVINGTN---GTEN 836
Query: 840 NVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899
+ RGM+LPFQPLSL+F++M+Y+VDMPAEMK +G E RLQLL +SG FRPGVLTAL+
Sbjct: 837 RRSQRGMVLPFQPLSLSFNHMNYYVDMPAEMKAQGFTESRLQLLSDISGAFRPGVLTALV 896
Query: 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959
GVSGAGKTTLMDVLAGRKT G IEGDIK+SGYPK QETFAR+SGYCEQ DIHSP +TVYE
Sbjct: 897 GVSGAGKTTLMDVLAGRKTSGTIEGDIKLSGYPKKQETFARISGYCEQTDIHSPNLTVYE 956
Query: 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAV 1019
S++YSAWLRLSS+VD RK+FV+EVM LVEL L D++VGLPGVSGLSTEQRKRLTIAV
Sbjct: 957 SIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPGVSGLSTEQRKRLTIAV 1016
Query: 1020 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFE+FDELLL
Sbjct: 1017 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFESFDELLL 1076
Query: 1080 LKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALS 1114
LKRGGRVIYAG LG S L+EYFE +IP P ++
Sbjct: 1077 LKRGGRVIYAGQLGLHSQILVEYFE-AIPGVPKIT 1110
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1394 bits (3607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/1089 (63%), Positives = 845/1089 (77%), Gaps = 19/1089 (1%)
Query: 37 VWNAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGML---NQVLEDGKVVKHEVDV 92
+W D+VFSRS R+ DDEE LRWAA+E+LPTYDR+++ +L K VDV
Sbjct: 26 MWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDV 85
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
L ++++ LLE ++++ +EDNEKFL +++ R DRVGI++P IEVR++HL E +V VG
Sbjct: 86 HGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVG 145
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
LPT+LN N LE A L ++P++K+++ +L DVSGI+KP RMTLLLGPPG+GKTT
Sbjct: 146 NSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTT 205
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LGKDL+ASGK+TY GH + EFVP+RT AYISQHDLH GEMTVRETL FS RC
Sbjct: 206 LLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARC 265
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQE ++ TDY+LKILGL+ICAD
Sbjct: 266 QGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICAD 325
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
TMVGDEM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTTFQI L+Q VHIL
Sbjct: 326 TMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHIL 385
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
T +++LLQPAPETY+LFDDIILLS+GQIVYQGPR++VLEFFE MGFKCP+RKGVADFL
Sbjct: 386 GGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFL 445
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ QYW R ++PYR++ V +FV F+SFH G+ IA++L VP+DKS++HPA+L
Sbjct: 446 QEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALA 505
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG EL +A RE LLMKRNSFVY+F+TFQL +SLI MT++FRT+M +
Sbjct: 506 TTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTS 565
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G Y GALFF +L IMFNGF+E A+TV +LP+F+KQRD LFYP+W++ +P W+L+IPI+
Sbjct: 566 GGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITF 625
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++ +V LTYY IG+D FFKQ+L +I+ M+ L+R + R +++N +F
Sbjct: 626 IEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASF 685
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LLI M LGGF++A++ ++ + WGY+ISPMMY Q ++ VNE +G W+ + N+
Sbjct: 686 MLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNE- 744
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812
T+G +LK RG E+ WYWIG GA+ G++ LFN LF AL YL P G+S +V EE+ +
Sbjct: 745 TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELK 804
Query: 813 KQRA-------------SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDN 859
++RA SG M + S V VT RGM+LPF PLSL+FDN
Sbjct: 805 EKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDN 864
Query: 860 MSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+ Y VDMP EMK +GV +DRL+LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 865 VRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 924
Query: 920 GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK 979
GYIEG I ISGYPK QETFARVSGYCEQNDIHSP VTVYESLL+SAWLRL DVD+ RK
Sbjct: 925 GYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRK 984
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
MF++EVMELVELKSL D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 985 MFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1044
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKL 1099
RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGG IYAGPLGH S +L
Sbjct: 1045 RAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSEL 1104
Query: 1100 IEYFEVSIP 1108
I+YFE SIP
Sbjct: 1105 IKYFE-SIP 1112
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1119 | ||||||
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.950 | 0.741 | 0.764 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.974 | 0.759 | 0.728 | 0.0 | |
| 224069796 | 1463 | predicted protein [Populus trichocarpa] | 0.968 | 0.740 | 0.751 | 0.0 | |
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.975 | 0.753 | 0.718 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.969 | 0.749 | 0.719 | 0.0 | |
| 449451112 | 1455 | PREDICTED: ABC transporter G family memb | 0.990 | 0.761 | 0.716 | 0.0 | |
| 147794195 | 1456 | hypothetical protein VITISV_025837 [Viti | 0.945 | 0.726 | 0.727 | 0.0 | |
| 449511856 | 1455 | PREDICTED: ABC transporter G family memb | 0.990 | 0.761 | 0.716 | 0.0 | |
| 147855195 | 1454 | hypothetical protein VITISV_006821 [Viti | 0.954 | 0.734 | 0.742 | 0.0 | |
| 255587046 | 1437 | ATP-binding cassette transporter, putati | 0.951 | 0.741 | 0.735 | 0.0 |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1757 bits (4551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1078 (76%), Positives = 953/1078 (88%), Gaps = 14/1078 (1%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML QVL++G+VV +VDV+ L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 AVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRA 155
VQDKK+L+ESILK+VE+DNEKFL R+R RTDRVGIE PKIEVRY +LS+EGDV+VG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLML 215
LPTLLN LN +E+ LGL+HL PSKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+L
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 206
Query: 216 ALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
ALAGKL DL+ SGK+TYCGHEL+EF+PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV
Sbjct: 207 ALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 266
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
GTRYE+LAELSRRE++AGIKPDPEIDAFMKA A++GQETSLVTDYVLKILGLDICAD MV
Sbjct: 267 GTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMV 326
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
GD+MRRGISGGQKKRVTTGEMLVG A VL MDEISTGLDSSTTFQI KF++QMVHI+DVT
Sbjct: 327 GDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDVT 386
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
MI++LLQPAPETYDLFDDIILLS+GQIVYQGPR+NVLEFFE+MGF+CPERKGVADFLQEV
Sbjct: 387 MIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEV 446
Query: 456 TSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEK 515
TSKKDQEQYW+++NQPY + V DFVE F SFH+GQQ++++L VPYDK++ HPA+LV EK
Sbjct: 447 TSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEK 506
Query: 516 YGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR 575
YGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T MSLI +TV+ RT+M G + G +
Sbjct: 507 YGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGK 566
Query: 576 YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDS 635
+FGALFFSL+N+MFNG AE AMTV RLP+F+KQRD LFYP+WAFALPIW+LRIP+S ++S
Sbjct: 567 FFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFMES 626
Query: 636 TIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILL 695
IW+ LTYYTIG+ PAASRFF+QFLAFF IH M+L L+R +AAVGRT+V++NTLGTF LL
Sbjct: 627 GIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLL 686
Query: 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIG 755
++ LGGF+++K+DIEPF+ WGYYISPMMYGQ ++++NEFL RW A N D N+PT+G
Sbjct: 687 MVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTVG 746
Query: 756 KVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQR 815
KVLLK RGF + W+WI V AL +S LFN LF+AAL +LNP+GD+ + ++
Sbjct: 747 KVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAILN------- 799
Query: 816 ASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGV 875
EG MAV +SS+ VG+A+N RGM+LPFQPLSL F++++YFVDMPAEMK++GV
Sbjct: 800 ------EGTDMAVINSSEIVGSAENAPKRGMVLPFQPLSLAFEHVNYFVDMPAEMKSQGV 853
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
EDRLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ
Sbjct: 854 EEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQ 913
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+TFARVSGYCEQNDIHSPYVTV+ESLLYSAWLRLSSDVDT+ RKMFV+EVMELVELK L
Sbjct: 914 KTFARVSGYCEQNDIHSPYVTVHESLLYSAWLRLSSDVDTQTRKMFVEEVMELVELKPLR 973
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
DS+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT
Sbjct: 974 DSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1033
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPAL 1113
GRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG SHKL+EYFE +IP P +
Sbjct: 1034 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFE-AIPGVPKI 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1727 bits (4474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1119 (72%), Positives = 955/1119 (85%), Gaps = 28/1119 (2%)
Query: 2 SATVADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSER---QDDEEELR 58
SA DDLA +S+ SRRSW +AS R+ W A +VF+ S R +DDEEEL+
Sbjct: 3 SALAGDDLA----------VSTSSRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELK 52
Query: 59 WAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKF 118
WAAI+RLPT++R++KG+L VL+DG V+ EVDVSNL + DKK L++SILKIVEEDNEKF
Sbjct: 53 WAAIDRLPTFERMRKGVLKHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKF 112
Query: 119 LKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVP 178
L+R+R+R DRVGIEIPKIEVR ++LSVEGDVHVG+RALPTLLN LN ES LG+ HL P
Sbjct: 113 LRRLRNRVDRVGIEIPKIEVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAP 172
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
SKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+LALAGKL +DLR SG+ITYCGHEL
Sbjct: 173 SKKREIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDRDLRVSGRITYCGHEL 232
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
NEFVPQ+TCAYISQHD+H+GEMTVRETLDFSGRCLGVGTRYE L ELSRRE++AGIKPDP
Sbjct: 233 NEFVPQKTCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDP 292
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
EIDAFMKA+A++GQ+T+LVTDYVLKILGLDICAD +VGDEMRRGISGGQKKRVTTGEMLV
Sbjct: 293 EIDAFMKAIALSGQKTNLVTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLV 352
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
G A L+MDEISTGLDSSTTFQICKF++QMVH++DVTM+++LLQPAPET++LFDDIILLS
Sbjct: 353 GPAKALFMDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLS 412
Query: 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVS 478
EGQIVYQGPR+N LEFFEHMGFKCPERKGV DFLQEVTSKKDQ+QYW RK++PYRY+ VS
Sbjct: 413 EGQIVYQGPRENGLEFFEHMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVS 472
Query: 479 DFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRN 538
+FV+ F SF +G+Q+A++L VPYDK QAHPA+LVK+KYGI+ WELF+ACF+REWLLMKR+
Sbjct: 473 EFVQAFSSFDIGEQLATELGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRS 532
Query: 539 SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMT 598
SFVYIFKT Q+T MS+I TV+ RTEMSVG + G ++FGALFFSL+N+MFNG AE +MT
Sbjct: 533 SFVYIFKTTQITIMSIITFTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMT 592
Query: 599 VLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658
V RLP+FYKQRD FYP+WAF LPIWLLRIP+SI++S IW+ALTYYTIG+ P+ASRF +Q
Sbjct: 593 VFRLPVFYKQRDFRFYPAWAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQ 652
Query: 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGY 718
FLA F+IH M+L L+R +AA GRT V++NTLGT L ++ LGGFV+AKDDIEP++ WGY
Sbjct: 653 FLALFAIHQMALSLFRFLAAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGY 712
Query: 719 YISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGAL 778
Y+SPMMYGQ ++++NEFL RW N DP IN PT+GKVLLK RGF TE W+WI +GAL
Sbjct: 713 YLSPMMYGQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSRGFYTEEYWFWICIGAL 772
Query: 779 TGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAA 838
G+S LFN LFI AL YLNP+G S + + + EG MAV+ SS+ +
Sbjct: 773 LGFSLLFNLLFIVALTYLNPLGYSKAVIAD-------------EGTDMAVKESSEMASSL 819
Query: 839 QNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898
RGM+LPFQPLSL F+++SY+VDMPAEM++ G+ +DRLQLL VSG FRPG+LTAL
Sbjct: 820 NQEPRRGMVLPFQPLSLAFNHISYYVDMPAEMRSRGINKDRLQLLQDVSGAFRPGILTAL 879
Query: 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958
+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP+VTVY
Sbjct: 880 VGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPHVTVY 939
Query: 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA 1018
ESLL+SAWLRL SDV+ +KRKMFV+EVMELVEL + D++VGLPGV GLSTEQRKRLTIA
Sbjct: 940 ESLLFSAWLRLPSDVNAQKRKMFVEEVMELVELNQIRDALVGLPGVDGLSTEQRKRLTIA 999
Query: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE+L
Sbjct: 1000 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEIL 1059
Query: 1079 LLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVDG 1117
L+KRGG+VIYAGPLG SHKLIEYFE IP P + DG
Sbjct: 1060 LMKRGGQVIYAGPLGRHSHKLIEYFE-GIPGVPKIK-DG 1096
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069796|ref|XP_002326416.1| predicted protein [Populus trichocarpa] gi|222833609|gb|EEE72086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 821/1093 (75%), Positives = 965/1093 (88%), Gaps = 9/1093 (0%)
Query: 29 WASASIREVWNAPDNVFS-----RSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
WASASIRE W AP +VFS R ++ DDEEELRWAAIERLPTYDR++KG+L QVL++G
Sbjct: 27 WASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNG 86
Query: 84 KVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHL 143
++V+ EVDV+ L +QDKK+L+E+IL++VEEDNEKFL+R+R RTDRVGIEIPKIEVR+ HL
Sbjct: 87 RMVQSEVDVTRLGMQDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHL 146
Query: 144 SVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLL 203
SVEG+V VG+RALPTLLN LN +ES LGL+ L PSKKR+V+IL+D+SGIVKPSRM LLL
Sbjct: 147 SVEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPSRMALLL 206
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263
GPP +GKTT+++ALAGKL ++LR+SGKITYCGHEL EFVPQR+CAYISQHDLH+GEMTVR
Sbjct: 207 GPPSSGKTTMLMALAGKLHRELRSSGKITYCGHELKEFVPQRSCAYISQHDLHYGEMTVR 266
Query: 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323
ETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A++GQE SLVTDY LK
Sbjct: 267 ETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMSGQEHSLVTDYTLK 326
Query: 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK 383
ILGLDICAD +VG++M+RGISGGQKKRVTTGEMLVG A VL MDEISTGLDS+TTFQICK
Sbjct: 327 ILGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSATTFQICK 386
Query: 384 FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
F++QMVH +DVTMIV+LLQPAPET++LFDDIILLSEGQ+VYQGPR++VLEFFEHMGF+CP
Sbjct: 387 FMRQMVHTMDVTMIVSLLQPAPETFELFDDIILLSEGQVVYQGPREHVLEFFEHMGFRCP 446
Query: 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK 503
+RKG ADFLQEVTSKKDQEQYWFRKN PYR+I V +FV GF SFH+GQQ+ASDLR PYDK
Sbjct: 447 DRKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFNSFHVGQQLASDLRTPYDK 506
Query: 504 SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT 563
S+AHPA+LV EKYGIS WELFRACF+REWLLMKRNSF+YIFKT Q+T MS+I TV+FRT
Sbjct: 507 SRAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFKTTQITIMSIIAFTVFFRT 566
Query: 564 EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPI 623
EM VG + GG ++FGALFFSL+N+MFNG AE +MTV RLP+FYKQRD LF+P+WAF LPI
Sbjct: 567 EMKVGTVLGGQKFFGALFFSLVNVMFNGMAELSMTVFRLPVFYKQRDFLFFPAWAFGLPI 626
Query: 624 WLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTE 683
W+LRIP+S+++S IW+ +TYYTIG+ P+ASRFF+QFLAFF IH M+L L+R +AAVGRT+
Sbjct: 627 WVLRIPLSLMESAIWIIITYYTIGFAPSASRFFRQFLAFFCIHQMALALFRFIAAVGRTQ 686
Query: 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQ 743
V++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPMMYGQ ++++NEFL RW
Sbjct: 687 VVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYSSPMMYGQNAIVMNEFLDERWSVN 746
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
N D + T+GKVLLK RGF T+ W+WI +GAL G+S LFN LFI AL +LNP+GDS
Sbjct: 747 NTDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLFNVLFIVALTFLNPLGDSK 806
Query: 804 STVIEEDGEKQR--ASGHE-AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNM 860
+ V+++D +K + +SG + AEG+ MA R+S++ GA N T RGM+LPFQPLSL F+++
Sbjct: 807 AVVVDDDAKKNKKTSSGQQRAEGIPMATRNSTEIGGAVDNSTKRGMVLPFQPLSLAFNHV 866
Query: 861 SYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 920
SY+VDMP EMK++G+ E+RLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGG
Sbjct: 867 SYYVDMPDEMKSQGIDEERLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGG 926
Query: 921 YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKM 980
YIEG I ISGYPKNQETFARVSGYCEQNDIHSP VTVYESLLYSAWLRLS D+DTK RKM
Sbjct: 927 YIEGSINISGYPKNQETFARVSGYCEQNDIHSPRVTVYESLLYSAWLRLSKDIDTKTRKM 986
Query: 981 FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 987 FVEEVMELVELNPLRDALVGLPGLDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1046
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100
AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAG LGH SHKLI
Sbjct: 1047 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGSLGHRSHKLI 1106
Query: 1101 EYFEVSIPFFPAL 1113
EYFE ++P P +
Sbjct: 1107 EYFE-AVPGVPKI 1118
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1694 bits (4386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 791/1101 (71%), Positives = 945/1101 (85%), Gaps = 9/1101 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPF 850
AL YL+P+GDS S +I+E+ E++ E + V+ ++ T T RGM+LPF
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEKSEKQKTRESTKSVVKDANHT------PTKRGMVLPF 843
Query: 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
QPLSL F++++Y+VDMPA MK++G+ DRLQLL SG FRPG+ AL+GVSGAGKTTLM
Sbjct: 844 QPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLM 903
Query: 911 DVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
DVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL+
Sbjct: 904 DVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLA 963
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
DV + R++FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLT+AVELVANPSI+FM
Sbjct: 964 PDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFM 1023
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
DEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG++IYAG
Sbjct: 1024 DEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAG 1083
Query: 1091 PLGHESHKLIEYFEVSIPFFP 1111
LG SHKL+EYFE ++P P
Sbjct: 1084 ALGRNSHKLVEYFE-AVPGVP 1103
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1692 bits (4381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1106 (71%), Positives = 941/1106 (85%), Gaps = 21/1106 (1%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S+ SGSRRSWASASIREV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSTSSRS-KSLGSGSRRSWASASIREVVSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEV ++HLS+EGD +VGTRALPTLLN +N +E LGL+ L PSKKR V+ILKDV
Sbjct: 130 VEIPKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLKILGLDICAD +VGD+MRRGISGG+KKRVT GEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQ+ KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCPERKGVADFLQEVTS+KDQEQYWFRKN+PYRYI V +FV+ F SFH+G
Sbjct: 430 ILEFFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ D +PYD+S+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIGY PAASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT +++NTL TF LL++ LGGFV++KDDI+P++ WGYY SPMMYGQ +L
Sbjct: 670 SLFRFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW N I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAA-----QNVTNRG 845
AAL YL+P+GDS S +I+ EG+ M VR++ + A +T RG
Sbjct: 790 AALTYLDPLGDSKSVIID-------------EGIDMEVRNTRENTKAVVKDANHALTKRG 836
Query: 846 MILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAG 905
M+LPFQPLSL F++++Y+VDMPA MK++G D LQLL SG FRPG+L AL+GVSGAG
Sbjct: 837 MVLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGAFRPGILMALVGVSGAG 896
Query: 906 KTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA 965
KTTLMDVLAGRKT GYIEG I ISGYPKNQ TFAR+SGYCEQ DIHSP VTVYESL+YSA
Sbjct: 897 KTTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTDIHSPNVTVYESLVYSA 956
Query: 966 WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
WLRL+ DV + R++FV+EVM+LVEL L +++VGLPG+ GLSTEQRKRLT+AVELVANP
Sbjct: 957 WLRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLSTEQRKRLTVAVELVANP 1016
Query: 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
SIIFMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+
Sbjct: 1017 SIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1076
Query: 1086 VIYAGPLGHESHKLIEYFEVSIPFFP 1111
+IYAGPLG SHKL+EYFE ++P P
Sbjct: 1077 IIYAGPLGRNSHKLVEYFE-AVPGVP 1101
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451112|ref|XP_004143306.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1113 (71%), Positives = 960/1113 (86%), Gaps = 5/1113 (0%)
Query: 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S+RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRH 124
LPTYDRL+KGML VL++G+VV EVDV+ + +Q+K++L+ES+LKI+EEDNEKFL+R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSV 184
RTDRVGIE+PK+EVRY+HL+VEG++HVG+RALPTLLNV LN+ ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL +L+ +GKITYCGHE EFVPQ
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLKETGKITYCGHEFKEFVPQ 243
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELSRREK+AGIKPDPEIDAFM
Sbjct: 244 RTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELSRREKEAGIKPDPEIDAFM 303
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
KA++V+GQ T+L TDYVLKILGLDICAD +VG+EMRRGISGGQ+KRVTTGEMLVG A L
Sbjct: 304 KAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGGQRKRVTTGEMLVGPAKGL 363
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+MDEISTGLDSSTTFQICKF+KQMVHI+DVTMI++LLQPAPET+DLFDD+ILLSEG++VY
Sbjct: 364 FMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPETFDLFDDVILLSEGEVVY 423
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGF 484
QGPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF+K+QPYRY+ V +F++GF
Sbjct: 424 QGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWFKKSQPYRYVSVPEFIQGF 483
Query: 485 KSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544
K FH+GQ++ ++L VP+DK HPA+LV +KYG+S W+LFRA F+REWLLMKRNSF+YIF
Sbjct: 484 KKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRALFSREWLLMKRNSFIYIF 543
Query: 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPI 604
KT Q+T MSLI MTV+FRTEM G + GG +Y GALFFSL+N+MFNG AE A+T+ RLP+
Sbjct: 544 KTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLINMMFNGMAELALTITRLPV 603
Query: 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFS 664
FYKQRD LF+P WAF LPIW+LRIP+S+++S IW+ LTYYTIG+ PAASRFF+QFLA+F
Sbjct: 604 FYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTIGFAPAASRFFRQFLAYFG 663
Query: 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724
IH M+L L+R +AA GR +VI++T+G+F LLI+ LGGF++AK DIEP++ WGYYISPMM
Sbjct: 664 IHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIAKGDIEPWMIWGYYISPMM 723
Query: 725 YGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784
YGQ ++++NEFL RW+ + +P + T+GKV+L R F T + YWI VGAL G+SFL
Sbjct: 724 YGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYTTNKMYWICVGALFGFSFL 783
Query: 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNR 844
FN LFI AL +LNP+GDS S + +E +K+ + G+QM SS + + +
Sbjct: 784 FNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGIQMQPIKSSNAANNSNSTKKK 843
Query: 845 GMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGA 904
GM+LPFQPLSL F++++Y+VDMPAEMK++G+ +DRLQLL VSG FRPGVLTAL+GVSGA
Sbjct: 844 GMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDVSGAFRPGVLTALVGVSGA 903
Query: 905 GKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
GKTTLMDVLAGRKTGGYIEG I ISGYPKNQETFARVSGYCEQNDIHSP++TVYES+LYS
Sbjct: 904 GKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCEQNDIHSPHLTVYESVLYS 963
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
AWLRL S V+T+ RKMFV+EVMELVEL L +++VGLPG+ GLSTEQRKRLTIAVELVAN
Sbjct: 964 AWLRLPSSVNTETRKMFVEEVMELVELNPLREALVGLPGIDGLSTEQRKRLTIAVELVAN 1023
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL L+KRGG
Sbjct: 1024 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 1083
Query: 1085 RVIYAGPLGHESHKLIEYFEVSIPFFPALSVDG 1117
+VIYAG LGH+SH+L+EYFE S+P P + DG
Sbjct: 1084 QVIYAGSLGHQSHRLVEYFE-SVPGVPKIK-DG 1114
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794195|emb|CAN77838.1| hypothetical protein VITISV_025837 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 805/1106 (72%), Positives = 934/1106 (84%), Gaps = 48/1106 (4%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML QVL++G+VV +VDV+ L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 AVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRA 155
VQDKK+L+ESILK+VE+DNEKFL R+R RTDRVGIE PKIEVRY++LS+EGDV+VG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLXRLRDRTDRVGIETPKIEVRYENLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPS------------------ 197
LPTLLN LN +E+ LGL+HL PSKKR ++ILKDVSGIVKP
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPFKMVFIFCLAMAFTHHFLI 206
Query: 198 ------RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
RMTLLLGPP +GKTTL+LALAGKL DL+ SGK+TYCGHEL+EF+PQRTCAYIS
Sbjct: 207 FDMVIFRMTLLLGPPSSGKTTLLLALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYIS 266
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLHHGEMTVRETLDFSGRCLGVGTRYE+LAELSRRE++AGIKPDPEIDAFMKA A++G
Sbjct: 267 QHDLHHGEMTVRETLDFSGRCLGVGTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSG 326
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QETSLVTDYVLKILGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG A VL MDEIS
Sbjct: 327 QETSLVTDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISY 386
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
+ F C QPAPETYDLFDDIILLS+GQIVYQGPR+NV
Sbjct: 387 RVGQFHHFPDC-------------------QPAPETYDLFDDIILLSDGQIVYQGPRENV 427
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE+MGF+CPERKGVADFLQEVTSKKDQEQYW+++NQPY + V DFVE F SFH+GQ
Sbjct: 428 LEFFEYMGFRCPERKGVADFLQEVTSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQ 487
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
Q++++L VPYDK++ HPA+LV EKYGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T
Sbjct: 488 QLSAELSVPYDKTRTHPAALVTEKYGISNYELFKACFAREWLLMKRNSFVYIFKTTQITI 547
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
MSLI +TV+ RT+M G + G ++FGALFFSL+N+MFNG AE AMTV RLP+F+KQRD
Sbjct: 548 MSLIALTVFLRTQMPHGTLADGGKFFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDF 607
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYP+WAFA+PIW+LRIP+S ++S IW+ LTYYTIG+ PAASRFF+QFLAFF IH M+L
Sbjct: 608 LFYPAWAFAMPIWVLRIPLSFMESGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALS 667
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AAVGRT+V++NTLGTF LL++ LGGF+++K+DIEPF+ WGYYISPMMYGQ +++
Sbjct: 668 LFRFIAAVGRTQVVANTLGTFTLLMVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIV 727
Query: 732 VNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791
+NEFL RW A N D N+PT+GKVLLK RGF + W+WI V AL +S LFN LF+A
Sbjct: 728 MNEFLDKRWAAPNTDSRFNEPTVGKVLLKSRGFFVDEYWFWICVXALLAFSLLFNVLFVA 787
Query: 792 ALAYLNPIGDSNSTVI--EEDGEKQRASG--HEAEGMQMAVRSSSKTVGAAQNVTNRGMI 847
AL +LNP+GD+ + ++ E+D K +AS H EG MAV +SS+ VG+A+N RGM+
Sbjct: 788 ALTFLNPLGDTKNAILNEEDDKNKNKASSGQHSTEGTDMAVINSSEIVGSAENAPKRGMV 847
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
LPFQPLSL F++++YFVDMPAEMK++GV EDRLQLL VSG FRPG+LTAL+GVSGAGKT
Sbjct: 848 LPFQPLSLAFEHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKT 907
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967
TLMDVLAGRKTGGYIEG I ISGYPKNQ+TFARVSGYCEQNDIHSPYVTV+ESLLYSAWL
Sbjct: 908 TLMDVLAGRKTGGYIEGSISISGYPKNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAWL 967
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027
RLSSDVDT+ RKMFV+EVMELVELK L DS+VGLPGV GLSTEQRKRLTIAVELVANPSI
Sbjct: 968 RLSSDVDTQTRKMFVEEVMELVELKPLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1027
Query: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VI
Sbjct: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1087
Query: 1088 YAGPLGHESHKLIEYFEVSIPFFPAL 1113
YAGPLG SHKL+EYFE +IP P +
Sbjct: 1088 YAGPLGRHSHKLVEYFE-AIPGVPKI 1112
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511856|ref|XP_004164072.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1690 bits (4376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1113 (71%), Positives = 960/1113 (86%), Gaps = 5/1113 (0%)
Query: 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S+RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRH 124
LPTYDRL+KGML VL++G+VV EVDV+ + +Q+K++L+ES+LKI+EEDNEKFL+R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSV 184
RTDRVGIE+PK+EVRY+HL+VEG++HVG+RALPTLLNV LN+ ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL +L+ +GKITYCGHE EFVPQ
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLKETGKITYCGHEFKEFVPQ 243
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELSRREK+AGIKPDPEIDAFM
Sbjct: 244 RTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELSRREKEAGIKPDPEIDAFM 303
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
KA++V+GQ T+L TDYVLKILGLDICAD +VG+EMRRGISGGQ+KRVTTGEMLVG A L
Sbjct: 304 KAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGGQRKRVTTGEMLVGPAKGL 363
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+MDEISTGLDSSTTFQICKF+KQMVHI+DVTMI++LLQPAPET+DLFDD+ILLSEG++VY
Sbjct: 364 FMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPETFDLFDDVILLSEGEVVY 423
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGF 484
QGPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF+K+QPYRY+ V +F++GF
Sbjct: 424 QGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWFKKSQPYRYVSVPEFIQGF 483
Query: 485 KSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544
K FH+GQ++ ++L VP+DK HPA+LV +KYG+S W+LFRA F+REWLLMKRNSF+YIF
Sbjct: 484 KKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRALFSREWLLMKRNSFIYIF 543
Query: 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPI 604
KT Q+T MSLI MTV+FRTEM G + GG +Y GALFFSL+N+MFNG AE A+T+ RLP+
Sbjct: 544 KTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLINMMFNGMAELALTITRLPV 603
Query: 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFS 664
FYKQRD LF+P WAF LPIW+LRIP+S+++S IW+ LTYYTIG+ PAASRFF+QFLA+F
Sbjct: 604 FYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTIGFAPAASRFFRQFLAYFG 663
Query: 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724
IH M+L L+R +AA GR +VI++T+G+F LLI+ LGGF++AK DIEP++ WGYYISPMM
Sbjct: 664 IHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIAKGDIEPWMIWGYYISPMM 723
Query: 725 YGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784
YGQ ++++NEFL RW+ + +P + T+GKV+L R F T + YWI VGAL G+SFL
Sbjct: 724 YGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYTTNKMYWICVGALFGFSFL 783
Query: 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNR 844
FN LFI AL +LNP+GDS S + +E +K+ + G+QM SS + + +
Sbjct: 784 FNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGIQMQPIKSSNAANNSNSTEKK 843
Query: 845 GMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGA 904
GM+LPFQPLSL F++++Y+VDMPAEMK++G+ +DRLQLL VSG FRPGVLTAL+GVSGA
Sbjct: 844 GMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDVSGAFRPGVLTALVGVSGA 903
Query: 905 GKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
GKTTLMDVLAGRKTGGYIEG I ISGYPKNQETFARVSGYCEQNDIHSP++TVYES+LYS
Sbjct: 904 GKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCEQNDIHSPHLTVYESVLYS 963
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
AWLRL S V+T+ RKMFV+EVMELVEL L +++VGLPG+ GLSTEQRKRLTIAVELVAN
Sbjct: 964 AWLRLPSSVNTETRKMFVEEVMELVELNPLREALVGLPGIDGLSTEQRKRLTIAVELVAN 1023
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL L+KRGG
Sbjct: 1024 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 1083
Query: 1085 RVIYAGPLGHESHKLIEYFEVSIPFFPALSVDG 1117
+VIYAG LGH+SH+L+EYFE S+P P + DG
Sbjct: 1084 QVIYAGSLGHQSHRLVEYFE-SVPGVPKIK-DG 1114
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855195|emb|CAN83834.1| hypothetical protein VITISV_006821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1689 bits (4375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1081 (74%), Positives = 929/1081 (85%), Gaps = 13/1081 (1%)
Query: 36 EVWNAPDNVFSRSERQ--DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
EVWNAPD VF RS RQ DDEEEL+WAAIERLPTYDR++KGML QVL +G++V++EVDVS
Sbjct: 30 EVWNAPD-VFQRSGRQEADDEEELKWAAIERLPTYDRMRKGMLKQVLSNGRIVQNEVDVS 88
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
+L QDK++L+ESILK+VE+DNE+FL R+R RTDRVGIEIPKIEVR+ S+EGD +VGT
Sbjct: 89 HLGAQDKRQLMESILKVVEDDNERFLTRLRDRTDRVGIEIPKIEVRFQXFSIEGDGYVGT 148
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPTLLN LN +E +G++ L PSKKR V+IL+DVSGI++PSRMTLLLGPP +GKTT
Sbjct: 149 RALPTLLNSTLNAVEGVMGMIGLSPSKKRVVKILQDVSGIIRPSRMTLLLGPPASGKTTF 208
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+ AL+G+ +LR +GKITYCGHE +EFVPQRTCAYISQHDLH+GEMTVRETLDFSGRCL
Sbjct: 209 LKALSGEPDDNLRITGKITYCGHEFSEFVPQRTCAYISQHDLHYGEMTVRETLDFSGRCL 268
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVGTRYE+L ELSRREK+AGIKPDPEIDAFMKA A+AGQETSL+TDYVLKILGLDICAD
Sbjct: 269 GVGTRYEMLVELSRREKEAGIKPDPEIDAFMKATAMAGQETSLITDYVLKILGLDICADI 328
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
MVGDEMRRGISGGQKKRVTTGEMLVG A +MDEISTGLDSSTTFQI KF+KQMVHI+D
Sbjct: 329 MVGDEMRRGISGGQKKRVTTGEMLVGPAKAFFMDEISTGLDSSTTFQIVKFMKQMVHIMD 388
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
+TM+++LLQPAPETYDLFDDIILLSEG+IVYQGPR+NVLEFFEHMGF+CPERKGVADFLQ
Sbjct: 389 ITMVISLLQPAPETYDLFDDIILLSEGKIVYQGPRENVLEFFEHMGFRCPERKGVADFLQ 448
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQEQYWFRKNQPYRYI V +F F SFH+GQQI+ DL VPYDKS+AHPA+LVK
Sbjct: 449 EVTSKKDQEQYWFRKNQPYRYISVPEFARSFNSFHIGQQISEDLSVPYDKSRAHPAALVK 508
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
EKYGIS ELFRACF+REWLLMKRNSFVYIFKT QL M I MTV+ RTEM G +
Sbjct: 509 EKYGISNRELFRACFSREWLLMKRNSFVYIFKTSQLLIMGTIAMTVFLRTEMKSGQLGDA 568
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
+++GALFFSL+N+MFNG AE AMTV RLP+F+KQRD LF+P+WAFALPIW+LRIP+S++
Sbjct: 569 PKFWGALFFSLVNVMFNGMAELAMTVFRLPVFFKQRDFLFFPAWAFALPIWVLRIPVSLM 628
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
+S IW+ LTYYTIG+ PAASRFFKQFLAFF +H M+L L+R +AA GRT V++NTLGTF
Sbjct: 629 ESGIWIVLTYYTIGFAPAASRFFKQFLAFFGVHQMALSLFRFIAAAGRTPVVANTLGTFT 688
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
LLI+ LGG+V+A+ DIEP++ WGYY SPMMYGQ ++ +NEFL RW+ N P+ + +
Sbjct: 689 LLIVFVLGGYVVARVDIEPWMIWGYYASPMMYGQNAIAINEFLDERWN--NPVPN-STDS 745
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEE--DG 811
+G LLK RG ++ +WYWI VGAL +S LFN LFIAAL + NP GD+ S ++E+ D
Sbjct: 746 VGVTLLKERGLFSDEHWYWICVGALFAFSLLFNVLFIAALTFFNPPGDTKSLLLEDNPDD 805
Query: 812 EKQRASGHEAEGMQMAVRS----SSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMP 867
+R EG+ MAVR+ SS + AA N + +GM+LPFQPLSL F +++Y+VDMP
Sbjct: 806 NSRRPLTSNNEGIDMAVRNAQGDSSSAISAADNGSRKGMVLPFQPLSLAFSHVNYYVDMP 865
Query: 868 AEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIK 927
AEMK+EGV EDRLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I
Sbjct: 866 AEMKSEGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSIS 925
Query: 928 ISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
ISGYPKNQ TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL+SDV RKMFV+EVM+
Sbjct: 926 ISGYPKNQATFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLASDVKDSTRKMFVEEVMD 985
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LVEL L ++VGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR
Sbjct: 986 LVELNPLRHALVGLPGVGGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1045
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSI 1107
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG SHKL+EYFE S+
Sbjct: 1046 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFE-SV 1104
Query: 1108 P 1108
P
Sbjct: 1105 P 1105
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587046|ref|XP_002534113.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525836|gb|EEF28273.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1685 bits (4363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1082 (73%), Positives = 944/1082 (87%), Gaps = 17/1082 (1%)
Query: 38 WNAPDNVFSRSERQDDEEELR-WAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLA 96
W + + VF+RS+R++++EE WAAIERLPTY R++KGML QVL++G V++ EVD+ L
Sbjct: 30 WTSGNGVFNRSQRREEDEEELRWAAIERLPTYRRMRKGMLRQVLDNGSVIESEVDLRKLG 89
Query: 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRAL 156
+QDKK+L+ESILK E+DNEKFL R+R R DRVGI+IPKIEVR++HLSV GDVHVG+RAL
Sbjct: 90 LQDKKKLMESILKDAEDDNEKFLTRLRERADRVGIDIPKIEVRFEHLSVGGDVHVGSRAL 149
Query: 157 PTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216
PTLLN LN +E+ LGL+ L PSKKR ++IL+D+SGIV+PSRMTLLLGPPGAGKTTL+LA
Sbjct: 150 PTLLNATLNSVETVLGLIGLAPSKKRRIQILQDLSGIVRPSRMTLLLGPPGAGKTTLLLA 209
Query: 217 LAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276
LAGKL +DLR GKITYCGHEL+EF+PQRTCAYISQHD+HHGEMTVRET DFSGRCLGVG
Sbjct: 210 LAGKLDQDLRKLGKITYCGHELHEFIPQRTCAYISQHDVHHGEMTVRETFDFSGRCLGVG 269
Query: 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336
TRYE+LAELSRREK +GIKPD EIDAFMKA A++GQ+TSLVTDYVLK+LGLDICAD +VG
Sbjct: 270 TRYEMLAELSRREKASGIKPDSEIDAFMKATALSGQKTSLVTDYVLKLLGLDICADIVVG 329
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D+MRRGISGGQKKRVTTGEMLVG A VL MDEISTGLDSSTTFQIC+F++QMVHI+D+TM
Sbjct: 330 DQMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICRFMRQMVHIMDITM 389
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
I++LLQPAPET++LFDD+ILLS+GQIVYQGPR+N+LEFFE+MGF+CPERKGVADFLQEVT
Sbjct: 390 IISLLQPAPETFELFDDVILLSDGQIVYQGPRENILEFFEYMGFRCPERKGVADFLQEVT 449
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKY 516
SKKDQEQYW++K+QPY +I V DFV+GF SFH+GQQ+ASDL VPY+KS+AHPA+LV +KY
Sbjct: 450 SKKDQEQYWYKKDQPYSFISVPDFVQGFSSFHIGQQLASDLSVPYNKSRAHPAALVMDKY 509
Query: 517 GISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576
GIS WELF+ACF+REWLLMKRNSFVYIFKT Q+T MS+I TV+ RTEM VG + G ++
Sbjct: 510 GISNWELFKACFSREWLLMKRNSFVYIFKTVQITIMSIIAFTVFLRTEMKVGTVADGQKF 569
Query: 577 FGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDST 636
+GALFFSL+N+MFNG AE A+T+ RLP+++KQRD LFYP+WAFALPIW+LRIP+S L+S
Sbjct: 570 YGALFFSLINVMFNGMAELALTMFRLPVYFKQRDFLFYPAWAFALPIWVLRIPLSFLESG 629
Query: 637 IWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLI 696
IW+ LTYYTIG+ PAASRFF+QFL FF IH M+L L+R +AAVGRTE+++NTLGTF LL+
Sbjct: 630 IWILLTYYTIGFAPAASRFFRQFLTFFGIHQMALSLFRFIAAVGRTEIVANTLGTFTLLL 689
Query: 697 MMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGK 756
+ LGGF++A++DI P++ WGYY+SPMMYGQ ++++NEFL RW A N DP I+ PT+GK
Sbjct: 690 VFVLGGFIIAREDIAPWMIWGYYVSPMMYGQNAIVMNEFLDERWSAPNPDPRIDAPTVGK 749
Query: 757 VLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRA 816
VLLK RGF T+ W+WI VGAL G+S LFN LFIAAL +LNP+G+S +++
Sbjct: 750 VLLKARGFFTDDYWFWICVGALFGFSLLFNILFIAALTFLNPLGNSKGHIVD-------- 801
Query: 817 SGHEAEGMQMAVRSSSKTVGAAQNVTN-RGMILPFQPLSLTFDNMSYFVDMPAEMKTEGV 875
EG MAVR+SS VGA + +T+ RGM+LPFQPLSL F+ ++Y+VDMPAEMK EGV
Sbjct: 802 -----EGTDMAVRNSSDGVGAERLMTSKRGMVLPFQPLSLAFNLVNYYVDMPAEMKKEGV 856
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
E RLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKT GYI+G I ISGYPKNQ
Sbjct: 857 QEKRLQLLRDVSGSFRPGILTALVGVSGAGKTTLMDVLAGRKTTGYIDGSINISGYPKNQ 916
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
TFARVSGYCEQNDIHSP+VTVYESLLYSAWLRLS DVDTK RKMF++E+M+LVEL +
Sbjct: 917 ATFARVSGYCEQNDIHSPHVTVYESLLYSAWLRLSKDVDTKMRKMFIEEIMDLVELDPIR 976
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT
Sbjct: 977 DALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSV 1115
GRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG SHKLIEYFE +IP P +
Sbjct: 1037 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRFSHKLIEYFE-AIPGVPKIK- 1094
Query: 1116 DG 1117
DG
Sbjct: 1095 DG 1096
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1119 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.960 | 0.739 | 0.707 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.954 | 0.734 | 0.705 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.941 | 0.739 | 0.607 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.949 | 0.722 | 0.604 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.945 | 0.733 | 0.592 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.948 | 0.747 | 0.568 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.678 | 0.532 | 0.500 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.937 | 0.742 | 0.535 | 4.9e-307 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.937 | 0.723 | 0.538 | 4.9e-307 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.838 | 0.662 | 0.480 | 6.8e-230 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4075 (1439.5 bits), Expect = 0., P = 0.
Identities = 767/1084 (70%), Positives = 914/1084 (84%)
Query: 36 EVWNAP-DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
+V+ P D+VF RS+R ++D+ ELRWAA+ERLPTYDRL+KGML Q + +GK+ +VDV+
Sbjct: 36 DVFAPPTDDVFGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVT 95
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
NLA ++KK L+E ILK VEEDNEKFL+R+R RTDRVGIE+PKIEVRY++LSVEGDV +
Sbjct: 96 NLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSAS 155
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPTL NV LN +ES LGL HL+PSKKR + ILKD+SGI+KPSRMTLLLGPP +GKTTL
Sbjct: 156 RALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTL 215
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+ ALAGKL L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCL
Sbjct: 216 LQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCL 275
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVGTRY+LL ELSRRE++AGIKPDPEIDAFMK++A++GQETSLVTDYVLK+LGLDICADT
Sbjct: 276 GVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADT 335
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
+VGD MRRGISGGQ+KR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI D
Sbjct: 336 LVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIAD 395
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
VTM+++LLQPAPET++LFDDIILLSEGQIVYQG RDNVLEFFE+MGFKCPERKG+ADFLQ
Sbjct: 396 VTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQ 455
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQEQYW R+ PY Y+ V DF GF SFH GQQ+AS+ RVPYDK++ HPA+LV
Sbjct: 456 EVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVT 515
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYGIS +LF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVYFRTEM VG + G
Sbjct: 516 QKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDG 575
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
+++GALFFSL+N+MFNG AE A TV+RLP+F+KQRD LFYP WAFALP +LL+IP+S++
Sbjct: 576 QKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLI 635
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
+S IW+ALTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVI+N+ GT
Sbjct: 636 ESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLA 695
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
LL++ LGGF+++KDDI +L W YY SPMMYGQT+L++NEFL RW + N D IN T
Sbjct: 696 LLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKT 755
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+G+VLLK RGF TE W+WI +GAL G++ NP+G+S +T + E+G+
Sbjct: 756 VGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKD 815
Query: 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTE 873
+ H G + +S+ + G +GM+LPFQPLSL F+N++Y+VDMPAEMK +
Sbjct: 816 KHKGSHSGTGGSVVELTSTSSHGP-----KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQ 870
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933
GV DRLQLL V G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+EG I ISGYPK
Sbjct: 871 GVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPK 930
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
NQ TFARVSGYCEQNDIHSP+VTVYESL+YSAWLRLS+D+DTK R+MFV+EVMELVELK
Sbjct: 931 NQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKP 990
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L +S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 991 LRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1050
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPAL 1113
DTGRTVVCTIHQPSIDIFE+FDELLL+KRGG+VIYAG LGH S KL+EYFE +I P +
Sbjct: 1051 DTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFE-AIEGVPKI 1109
Query: 1114 SVDG 1117
DG
Sbjct: 1110 K-DG 1112
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4060 (1434.3 bits), Expect = 0., P = 0.
Identities = 760/1077 (70%), Positives = 906/1077 (84%)
Query: 42 DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
D VF RSER ++D+ ELRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DK
Sbjct: 45 DEVFGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDK 104
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K L+E IL VEEDNEKFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL
Sbjct: 105 KHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLF 164
Query: 161 NVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
NV LN LES LG HL+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGK
Sbjct: 165 NVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGK 224
Query: 221 LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280
L L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+
Sbjct: 225 LDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQ 284
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
L++ELSRREK+ GIKPDP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MR
Sbjct: 285 LMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMR 344
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RGISGGQKKR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++L
Sbjct: 345 RGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISL 404
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET++LFDDIILLSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKD
Sbjct: 405 LQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKD 464
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
QEQYW ++ QPY Y+ VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS
Sbjct: 465 QEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISN 524
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WELF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+
Sbjct: 525 WELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAM 584
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FFSL+N+MFNG AE A TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+
Sbjct: 585 FFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIG 644
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
LTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +L
Sbjct: 645 LTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTL 704
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGF++AKDDI P++ W YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK
Sbjct: 705 GGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLK 764
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASGHE 820
RGF TE W+WI + AL G+S NP+G+S +TV+EE +KQ+
Sbjct: 765 SRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRG 824
Query: 821 AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRL 880
EG + + SSS G RGM+LPFQPLSL F+N++Y+VDMP+EMK +GV DRL
Sbjct: 825 TEGSVVELNSSSNK-GP-----KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRL 878
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
QLL V G FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFAR
Sbjct: 879 QLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFAR 938
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
VSGYCEQNDIHSP+VTVYESL+YSAWLRLS+D+D K R++FV+EVMELVELK L +S+VG
Sbjct: 939 VSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVG 998
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
LPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 999 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1058
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVDG 1117
CTIHQPSIDIFE+FDELLL+KRGG+VIYAG LGH S KL+EYFE ++ P ++ DG
Sbjct: 1059 CTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFE-AVEGVPKIN-DG 1113
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3410 (1205.4 bits), Expect = 0., P = 0.
Identities = 651/1071 (60%), Positives = 823/1071 (76%)
Query: 37 VWNAPDN--VFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
VW +FSRS R+ DDEE LRWAA+E+LPT+DRL+KG+L G + +E+D+
Sbjct: 19 VWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPI--NEIDIQ 76
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
L QD K+LLE ++K+ ++++EK L +++ R DRVGI++P IEVR+DHL VE +VHVG
Sbjct: 77 KLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGG 136
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPT +N N + L LHLVP++K+ IL DVSGIVKP RM LLLGPP +GKTTL
Sbjct: 137 RALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTL 196
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+LALAGKL ++L+ +G++TY GH +NEFVPQRT AYI Q+D+H GEMTVRET ++ R
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVG+RY++L EL+RREK+A IKPDP+ID FMKA++ AG++T+++TDY+LKILGL++CADT
Sbjct: 257 GVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADT 316
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
MVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+QI L+ VHI +
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
T +++LLQPAPET++LFDDIIL++EG+I+Y+GPRD+V+EFFE MGFKCP RKGVADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQ QYW R+++PYR+I V +F E F+SFH+G++I +L +P+DK+++HPA+L
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYG+ EL + F+RE+LLMKRNSFVY FK QL M+ + MT++FRTEM G
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
S Y GALFF L+ +MFNG +E +MT+ +LP+FYKQRD LFYP+W ++LP WLL+IPIS +
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
++ + +TYY IG+DP R FKQ++ ++ M+ L+++VAA+GR +++NT G F
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
+L+ +LGG V+++DDI+ + WGY+ISP+MYGQ ++L NEF G W ++ S T
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSS---ET 733
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+G LK RGF + WYWIG GAL G+ N +G + + EE
Sbjct: 734 LGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEP--- 790
Query: 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTE 873
+ E E +Q A RS V A N RGM+LPF+P S+TFDN+ Y VDMP EM +
Sbjct: 791 ---ASDETE-LQSA-RSEG-VVEAGAN-KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQ 843
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933
G EDRL LL V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK
Sbjct: 844 GTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPK 903
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
NQ+TFAR+SGYCEQ DIHSP+VTVYESL+YSAWLRL +VD KRK+F++EVMELVEL
Sbjct: 904 NQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTP 963
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L ++VGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 964 LRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1023
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
DTGRTVVCTIHQPSIDIFEAFDEL LLKRGG IY GPLGHES LI YFE
Sbjct: 1024 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFE 1074
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3384 (1196.3 bits), Expect = 0., P = 0.
Identities = 660/1092 (60%), Positives = 832/1092 (76%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++FS R+ DDEE L+WAAIE+LPTY RL+ ++N V+ED +++ EVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +D+++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRY+HL+++ D + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LPTLLNV NM ESALG++ + +KK + ILKD+SG++KP RMTLLLGPP +GKTT
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L+ SG ITY G++L+EFVP++T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G + SLVTDY LKILGLDIC D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIIL+SEGQIVYQGPRDN+LEFFE GFKCPERKG ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PY YIPVS+F +KSFH+G +++++L VP+DKS+ H A+LV
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY +SK EL ++C+ +EWLLM+RN+F Y+FKT Q+ ++ I T++ RTEM+ +
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y GAL F ++ MFNGFAE AM V RLP+FYKQRD LFYPSW F+LP +LL IP SI
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
L+ST W+ +TYY+IG+ P ASRFFKQFL F I M+ L+RL+A+V RT +I+NT G
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
LL++ LGGF++ K I + W Y++SP+ Y L+VNE RW NK S N
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRW--MNKMASSNST 750
Query: 753 T-IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDG 811
+G ++L + NWYWI VGAL ++ NP+G + EE+
Sbjct: 751 IKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEEN 810
Query: 812 EK-------QRASGHEAEGMQ--------MAVRSSSKTVGAAQNVTNRGMILPFQPLSLT 856
E R S A+G + M+ S+++ G A N +GM+LPF PL+++
Sbjct: 811 EDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGN--KKGMVLPFTPLAMS 868
Query: 857 FDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916
FD++ YFVDMP EM+ +GV E RLQLL V+G FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
KTGGYIEGD++ISG+PK QETFAR+SGYCEQ DIHSP VTV ESL++SA+LRL +V
Sbjct: 929 KTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKD 988
Query: 977 KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
++ MFVD+VMELVEL SL DS+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 EKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
LDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL+L+KRGG+VIYAGPLG S
Sbjct: 1049 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNS 1108
Query: 1097 HKLIEYFEVSIP 1108
HK++EYFE S P
Sbjct: 1109 HKVVEYFE-SFP 1119
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3349 (1184.0 bits), Expect = 0., P = 0.
Identities = 641/1081 (59%), Positives = 822/1081 (76%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++F+ S R+ +DEE L+WA+IE+LPTY+RL+ ++ ++ ED +++ VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +++++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRYDHL+V+ D + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LP+LLN NM E+ALG++ + +KK + ILKDVSGIVKPSRMTLLLGPP +GKTT
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L SG++TY G+ LNEFVP +T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G ++SL+TDY LKILGLDIC D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIILLSEGQIVYQGPRD++LEFFE GFKCPERKG ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PYRYIPVS+F FK FH+G +++++L VPYDKS++H A+L+
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY I K EL ++C+ +EW+LMKRNSF Y+FKT Q+ ++ I T+Y RTEM +
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y G+L F+++ MFNG AE AMT+ RLP+FYKQRD LF+P W + LP +LL IPISI
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
+ST W+ +TYY+IGY P A RFFKQFL F I M+ ++R +A+ RT I+NT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LL++ GGF++ + +I + RW Y+ISP+ Y ++ VNE RW NK +
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRW--MNKMSGNSTT 748
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGE 812
+G +L I + NWYWIGVG L G++ +P+G + + + +E+ E
Sbjct: 749 RLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDE 808
Query: 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKT 872
+ A G + + S S +GM+LPF PL+++FD++ YFVDMPAEM+
Sbjct: 809 E--AKGKAGSNKETEMESVS---------AKKGMVLPFTPLAMSFDDVKYFVDMPAEMRE 857
Query: 873 EGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932
+GV E RLQLL V+ FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD+++SG+P
Sbjct: 858 QGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFP 917
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
K QETFAR+SGYCEQ DIHSP VTV ESL++SA+LRL+ +V + + MFVD+VMELVEL
Sbjct: 918 KKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELV 977
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNT
Sbjct: 978 DLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 1037
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPA 1112
VDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG VIY+GPLG SHK++EYFE S P P
Sbjct: 1038 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFE-SFPGVPK 1096
Query: 1113 L 1113
+
Sbjct: 1097 I 1097
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3222 (1139.3 bits), Expect = 0., P = 0.
Identities = 611/1074 (56%), Positives = 807/1074 (75%)
Query: 37 VWNAPDNVFSRS----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDV 92
+WN+ +N FSRS + +DEEELRWAA++RLPTY R+++G+ ++ + K E+ +
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPK----EIQI 56
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
NL +++ LL+ ++ VE D E+F R+R R D V ++ PKIEVR+ +L VE VHVG
Sbjct: 57 GNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVG 116
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
+RALPT+ N +NM E L +H++ K+ + IL +SG+++PSR+TLLLGPP +GKTT
Sbjct: 117 SRALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTT 176
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LG +L+ SGKITY G++L E + RT AY+SQ D H EMTVR+TL+F+GRC
Sbjct: 177 LLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRC 236
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG +Y++L EL+RREK AGI PD ++D FMK++A+ G ETSLV +YV+KILGLD CAD
Sbjct: 237 QGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCAD 296
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGDEM +GISGGQKKR+TTGE+LVG A VL+MDEIS GLDSSTT QI +++ H L
Sbjct: 297 TLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHAL 356
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T +++LLQP+PETY+LFDD+IL+SEGQI+YQGPRD VL+FF +GF CP+RK VADFL
Sbjct: 357 EGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFL 416
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ+QYW +PYRY+P F E F+S+ G+++A L VP+DK H A+L
Sbjct: 417 QEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALS 476
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG+ K EL + FA + LMK+N+F+Y+FK QL ++LI MTV+ RT M ++
Sbjct: 477 TSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDD 536
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G+ Y G+L+FS++ I+FNGF E M V +LP+ YK RD FYPSWA+ LP WLL IP SI
Sbjct: 537 GNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSI 596
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++S WVA+TYYTIGYDP SRF +QFL +FS+H MSL L+R++ ++GR +++NT G+F
Sbjct: 597 IESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSF 656
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+L++M+LGGF++++D I + WGY+ISP+MY Q + VNEFLG W Q +
Sbjct: 657 AMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNW--QKTAGNHTSD 714
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGE 812
++G LLK R + + WYWIGV AL GY+ NP G + V E+ +
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 813 KQRASGHEAEGMQMAVRSSSKTVGAAQN--VTNRGMILPFQPLSLTFDNMSYFVDMPAEM 870
+R + + + +R + G+ NRGM+LPFQPLSL+F N++Y+VD+P +
Sbjct: 775 -EREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGL 833
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930
K +G+ EDRLQLL +++G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ ISG
Sbjct: 834 KEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISG 893
Query: 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+PK QETFAR+SGYCEQND+HSP +TV ESLL+SA LRL +D+D++ ++ FV EVMELVE
Sbjct: 894 FPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVE 953
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L SL+ ++VGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVR
Sbjct: 954 LTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1013
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
N V+TGRT+VCTIHQPSIDIFE+FDELL +KRGG +IYAGPLG +S +LI+YFE
Sbjct: 1014 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2056 (728.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 387/773 (50%), Positives = 539/773 (69%)
Query: 51 QDDEEELRWAAIERLP-----TYDRLKKGMLNQV----LEDGKVVKHEVDVSNLAVQDKK 101
+ DEE+LRWAAI RLP T++ + + Q DG VV+ +DV L D++
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQ-TIDVKKLDRADRE 90
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLN 161
L+ L ++DN K L I+ R DRVG+E+PKIEVR+++L++E DV GTRALPTL+N
Sbjct: 91 MLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVN 150
Query: 162 VALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
V+ + E L L ++ +K + ILKD+SGI+KP RMTLLLGPPG+GK+TL+LALAGKL
Sbjct: 151 VSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKL 210
Query: 222 GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE- 280
K L+ +G ITY G LN+F +RT AYISQ D H E+TVRETLDF+ RC G +
Sbjct: 211 DKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAG 270
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ +L+R EK+ GI+P EIDAFMKA +V G++ S+ TDYVLK+LGLD+C+DTMVG++M
Sbjct: 271 YMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMM 330
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGGQ+KRVTTGEM VG L+MDEISTGLDSSTTFQI K ++ VH++D T+++AL
Sbjct: 331 RGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMAL 390
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET+DLFDD+ILLSEG +VYQGPR++V+ FFE +GF+ P RKGVADFLQEVTSKKD
Sbjct: 391 LQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKD 450
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
Q QYW ++PY++IPVSD F++ G S L P+DK A P++L + K+ IS
Sbjct: 451 QAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISG 510
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WE + CF RE LL+KR+ F+Y F+T Q+ F+ L+ TV+ +T + G+ Y L
Sbjct: 511 WENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCL 570
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FF L+++MFNGF+E + + RLP+FYKQRD+ F+P+W++++ WLLR+P S+L++ +W
Sbjct: 571 FFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSG 630
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
+ Y+T+G P+A RFF+ L FS+H M+L L+R++A++ R VI+NT G+ +LI+ L
Sbjct: 631 VVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLL 690
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGFV+ K DI+P+ WG+++SP+ YGQ ++ VNEF RW + +I+ TIG LLK
Sbjct: 691 GGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPS---AISDTTIGLNLLK 747
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+R F T WYWIG+ L GY+ NP+ + + V+++ E+
Sbjct: 748 LRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDDPNEE 800
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2946 (1042.1 bits), Expect = 4.9e-307, P = 4.9e-307
Identities = 573/1070 (53%), Positives = 767/1070 (71%)
Query: 46 SRSERQD--DEEE--LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKK 101
SR+E +D DE E L+WA I+RLPT+ RL+ ++++ E + K VDV+ L ++
Sbjct: 10 SRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGAMERH 69
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLL 160
++E ++K +E DN K LK+IR R +RVG+E P IEVRY+HL VE V +ALPTL
Sbjct: 70 LMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLW 129
Query: 161 NVALNMLESALGLLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218
N ++ L LL L V + + +++IL DVSGI+ P R+TLLLGPPG GKTTL+ AL+
Sbjct: 130 NSLKHVF---LDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALS 186
Query: 219 GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
G L +L+ G+I+Y GH LNE VPQ+T AYISQHDLH EMT RET+DFS RC GVG+R
Sbjct: 187 GNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSR 246
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
+++ E+S+REK GI PDPEIDA+MKA++V G + SL TDY+LKILGLDICA+T+VG+
Sbjct: 247 TDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNA 306
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
M+RGISGGQKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q+ HI + T+ V
Sbjct: 307 MKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFV 366
Query: 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458
+LLQPAPE+YDLFDDI+L++EG+IVY GPRD+VL+FFE GF+CPERKGVADFLQEV SK
Sbjct: 367 SLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISK 426
Query: 459 KDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGI 518
KDQ QYW +N P+ ++ V + FK +G++I L PYD S+ H +L Y +
Sbjct: 427 KDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSL 486
Query: 519 SKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578
KWELFRAC +RE+LLMKRN FVY+FKTFQL ++I MTV+ RT M + ++G S Y
Sbjct: 487 PKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNS-YMS 545
Query: 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIW 638
LFF+ + ++ +G E +MTV RL +FYKQ+ FYP+WA+A+P +L+IP+S +S +W
Sbjct: 546 CLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVW 605
Query: 639 VALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMM 698
LTYY IGY P RFF+QF+ F++H S+ ++R +AA+ +T V + T G+F++LI
Sbjct: 606 TCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITF 665
Query: 699 SLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL 758
GF + D+ +L+WG++++P+ Y + L VNEFL RW Q P+ T+G+ +
Sbjct: 666 VFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRW--QKMQPT--NVTLGRTI 721
Query: 759 LKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASG 818
L+ RG + + YW+ + AL G + S + ++ + + +
Sbjct: 722 LESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTK 781
Query: 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGED 878
+ + SS KT N MILPF+PL++TF +++Y+VD+P EMK +G E
Sbjct: 782 DSSVKKNKPLDSSIKT-----NEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+LQLL ++G FRPGVLTALMG+SGAGKTTL+DVLAGRKT GYIEG+I+ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
ARVSGYCEQ DIHSP +TV ESL+YSAWLRL +++ + + FV +V+E +EL+ + D++
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
VG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIP 1108
+VCTIHQPSI IFEAFDEL+LLKRGGR+IY+GPLG S +IEYF+ +IP
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQ-NIP 1065
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2946 (1042.1 bits), Expect = 4.9e-307, P = 4.9e-307
Identities = 575/1067 (53%), Positives = 758/1067 (71%)
Query: 52 DDEEELRWAAIERLPTYDRLKKGMLNQ----VLEDGKVVKHEVDVSNLAVQDKKRLLESI 107
D E L+WA IERLPT R++ +L+ + E G+ V VDV+ L ++ ++E +
Sbjct: 54 DAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRV---VDVTKLGAVERHLMIEKL 110
Query: 108 LKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLLNVALNM 166
+K +E DN K LK+IR R DRVG+E+P IEVRY+ L V + V +ALPTL N A +
Sbjct: 111 IKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRV 170
Query: 167 LESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR 226
L S L L + + + I+ DV+GI+KP R+TLLLGPP GKTTL+ AL+G L +L+
Sbjct: 171 L-SELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLK 229
Query: 227 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
SG+I+Y GH L+EFVPQ+T AYISQ+DLH EMTVRET+DFS RC GVG+R +++ E+S
Sbjct: 230 CSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVS 289
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+REK+ GI PD E+DA+MKA++V G + SL TDY+LKILGLDICA+ ++GD MRRGISGG
Sbjct: 290 KREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGG 349
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q HI T++V+LLQPAPE
Sbjct: 350 QKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPE 409
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
+YDLFDDI+L+++G+IVY GPR VL FFE GF+CPERKGVADFLQEV SKKDQ QYW+
Sbjct: 410 SYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWW 469
Query: 467 RKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRA 526
++ PY ++ V + FK +G++I L PYD+S++H +L Y + WELF A
Sbjct: 470 HEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIA 529
Query: 527 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLN 586
C +RE+LLMKRN FVYIFKT QL + I MTV+ RT M + ++G S Y ALFF+L+
Sbjct: 530 CISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNS-YMSALFFALII 588
Query: 587 IMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTI 646
++ +GF E +MT RL +FYKQ+ FYP+WA+A+P +L++P+S +S +W L+YY I
Sbjct: 589 LLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVI 648
Query: 647 GYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMA 706
GY P ASRFFKQF+ F++H S+ ++R +AA+ +T V S T G+F +L GFV+
Sbjct: 649 GYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIP 708
Query: 707 KDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFST 766
+ +L+WG++ +P+ YG+ L VNEFL RW+ P N T+G+ +L+ RG
Sbjct: 709 PPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQ--P--NNFTLGRTILQTRGMDY 764
Query: 767 ESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASGHEAEGMQM 826
YW+ + AL G++ S+ +I +D + G E
Sbjct: 765 NGYMYWVSLCALLGFTVLFNIIFTLALTFLKS-PTSSRAMISQD-KLSELQGTEKSTEDS 822
Query: 827 AVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSV 886
+VR + T + M+LPF+PL++TF +++YFVDMP EM+ +G + +LQLL +
Sbjct: 823 SVRKKT-TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDI 881
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE 946
+G FRPG+LTALMGVSGAGKTTL+DVLAGRKT GYIEGDI+ISG+PK QETFARVSGYCE
Sbjct: 882 TGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCE 941
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q DIHSP +TV ES++YSAWLRL+ ++D + FV +V+E +EL + DS+VG+ GVSG
Sbjct: 942 QTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSG 1001
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQP
Sbjct: 1002 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 1061
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPAL 1113
SIDIFEAFDEL+LLKRGGR+IY GPLG S +IEYFE S+P P +
Sbjct: 1062 SIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFE-SVPEIPKI 1107
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2218 (785.8 bits), Expect = 6.8e-230, P = 6.8e-230
Identities = 468/973 (48%), Positives = 645/973 (66%)
Query: 42 DNVFSR---SERQD-DEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAV 97
+N FSR S D DEE L+WAA+E+LPT+ RL+ +++ ED VDV+ L V
Sbjct: 21 NNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPH-ED------LVDVTKLGV 73
Query: 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALP 157
D+++ ++SI K+ EEDNEKFLK+ R+R DRV I++P +EVR++ +++E + H+G RALP
Sbjct: 74 DDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALP 133
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
TL N ALN+ E L LL +K V IL+DVSGI+KPSRMTLLLGPP +GKTTL+LAL
Sbjct: 134 TLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLAL 193
Query: 218 AGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
AGKL + L+ +G++TY GH L EFVPQ+T AYISQ+D+H G MTV+ETLDFS RC GVGT
Sbjct: 194 AGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGT 253
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
RY+LL+EL RREK AGI P+PE+D FMK++A ++SL+TDY L+ILGLDIC DT+VGD
Sbjct: 254 RYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGD 313
Query: 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
EM RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTT+QI K L+++V D T++
Sbjct: 314 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVL 373
Query: 398 VALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457
++LLQPAPET++LFDDIILLSEGQIVYQGPRD+VL FFE GFKCP+RKG ADFLQEVTS
Sbjct: 374 MSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTS 433
Query: 458 KKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYG 517
+KDQEQYW +PY YI VS+F + F++FH+G + DL VPYD+ ++HPASLV +K+
Sbjct: 434 RKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHS 493
Query: 518 ISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF 577
+ K +LF+ C+ RE LLMKRN+F YI KT Q+ M+LI TVY RTEM + + G+ Y
Sbjct: 494 VPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYI 553
Query: 578 GALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTI 637
GAL FS++ MFNGFAE A+ + RLP+FYKQRD LF+P W F+LP +LL IPISI +S +
Sbjct: 554 GALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVV 613
Query: 638 WVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIM 697
WV +TYY IG+ P SRF K L F M+ ++R +AA R+ +++NT G ++L++
Sbjct: 614 WVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLL 673
Query: 698 MSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKV 757
LGGF++ + +I + +W Y++SPM Y +L VNE L RW N+ S N ++G
Sbjct: 674 FLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWI--NQPSSDNSTSLGLA 731
Query: 758 LLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRA- 816
+L+I T+ NWYWIGVG + G++ NP+ + V +E+ E+ RA
Sbjct: 732 VLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAE 791
Query: 817 SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVG 876
+G +++ + + + N + P + +S D +K E G
Sbjct: 792 NGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDM-PKEMKEQGVSK--DKLQLLK-EVTG 847
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPK 933
R +L ++ GV G T LM V AG+ T + + G+ E +ISGY +
Sbjct: 848 VFRPGVLTALMGVSGAGK-TTLMDVL-AGRKTGGYIEGDIRISGFPKRQETFARISGYCE 905
Query: 934 NQETFA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ + +V+ +++ I+S ++ + + + +R VD V E++EL LK
Sbjct: 906 QNDIHSPQVT--VKESLIYSAFLRLPKEVTKYEKMRF---VDE------VMELVELESLK 954
Query: 993 SLNDSMVGLPGVS 1005
+ G+ G+S
Sbjct: 955 DAVVGLPGITGLS 967
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC87 | AB34G_ARATH | No assigned EC number | 0.7135 | 0.9749 | 0.7508 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6236 | 0.9678 | 0.75 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00021655001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (1451 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1119 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-100 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-78 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-71 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-64 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-44 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-42 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-38 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-35 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-32 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-32 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-24 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-18 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-15 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-15 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-13 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-12 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 8e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-11 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-10 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-09 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-09 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 8e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-08 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 8e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-07 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 1e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 7e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 7e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 8e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-06 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 8e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-04 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 9e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 9e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 9e-04 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 9e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 0.001 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.001 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.001 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.002 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.002 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.002 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.004 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.004 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.004 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.004 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.004 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.004 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1622 bits (4202), Expect = 0.0
Identities = 696/1125 (61%), Positives = 864/1125 (76%), Gaps = 37/1125 (3%)
Query: 20 SISSGSRRSWASASIREVWNAPDNVFS---RSERQ-----DDEEELRWAAIERLPTYDRL 71
S RRS + + R N D VFS +S R+ +DEE L+WAAIE+LPTY RL
Sbjct: 3 SRGGSMRRSISRSVSRSSRNMED-VFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRL 61
Query: 72 KKGMLNQVLED---GKVVKH-EVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTD 127
+ ++ +E+ G + H EVDV+ L D+++ ++ + K+ EEDNEKFLK+ R+R D
Sbjct: 62 RTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRID 121
Query: 128 RVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRIL 187
RVGI++P +EVR++HL+VE D ++G+RALPTL N A N+ ESALG+L + +KK + IL
Sbjct: 122 RVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTIL 181
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
KD SGI+KPSRMTLLLGPP +GKTTL+LALAGKL L+ SG+ITY G+ LNEFVP++T
Sbjct: 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241
Query: 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
AYISQ+D+H G MTV+ETLDFS RC GVGTRY+LL+EL+RREK AGI P+ E+D FMKA
Sbjct: 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKAT 301
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMD 367
A+ G ++SL+TDY LKILGLDIC DT+VGDEM RGISGGQKKRVTTGEM+VG L+MD
Sbjct: 302 AMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMD 361
Query: 368 EISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
EISTGLDSSTT+QI K L+Q+VH+ + T++++LLQPAPET+DLFDDIILLSEGQIVYQGP
Sbjct: 362 EISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421
Query: 428 RDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487
RD++LEFFE GFKCPERKG ADFLQEVTSKKDQEQYW +N+PYRYI VS+F E FKSF
Sbjct: 422 RDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481
Query: 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTF 547
H+G Q+ ++L VP+DKSQ+H A+LV KY + K EL +AC+ +EWLLMKRN+FVY+FKT
Sbjct: 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTV 541
Query: 548 QLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYK 607
Q+ ++ I TV+ RTEM + G+ Y GAL FS++ MFNGFAE A+ + RLP+FYK
Sbjct: 542 QIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601
Query: 608 QRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHN 667
QRD LF+P W F LP +LL IPISI++S +WV +TYY+IG+ P ASRFFKQ L F I
Sbjct: 602 QRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQ 661
Query: 668 MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727
M+ ++RL+A+V RT +I+NT G +LL++ LGGF++ K +I + W Y++SP+ YG
Sbjct: 662 MAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721
Query: 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNF 787
+L VNE RW NK S N +G +L I T+ NWYWIGVGAL G++ LFN
Sbjct: 722 NALAVNEMFAPRW--MNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNV 779
Query: 788 LFIAALAYLNPIGDSNSTVIEEDGEK------------QRASGHEAEGMQMAVRSSSK-- 833
LF AL YLNP+G + + EE E+ A G+ + + S+ +
Sbjct: 780 LFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGL 839
Query: 834 ------TVGAAQNVTN-RGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSV 886
++ AA V RGM+LPF PL+++FD+++YFVDMPAEMK +GV EDRLQLL V
Sbjct: 840 SKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREV 899
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE 946
+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI+ISG+PK QETFAR+SGYCE
Sbjct: 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCE 959
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
QNDIHSP VTV ESL+YSA+LRL +V +++ MFVDEVMELVEL +L D++VGLPGV+G
Sbjct: 960 QNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTG 1019
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFP 1111
SIDIFEAFDELLL+KRGG+VIY+GPLG SHK+IEYFE +IP P
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFE-AIPGVP 1123
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 967 bits (2501), Expect = 0.0
Identities = 326/1049 (31%), Positives = 505/1049 (48%), Gaps = 106/1049 (10%)
Query: 112 EEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLES 169
E + + ++K R D I K+ V Y +LS G V + PT N L +L
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRAS 228
L ++ ILK + G++KP +T++LG PG+G +TL+ +A G +
Sbjct: 61 GFRKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 229 GKITYCGHELNEFVPQRT--CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ITY G E Y ++ D+H +TV ETLDF+ RC R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ + D + GL +T VG++ RG+SGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
++KRV+ E +G A + D + GLDS+T + + LK +ILD T +VA+ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYW- 465
Y+LFD +I+L EG +Y GP D ++FE MGFKCP+R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 466 -FRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK----------SQAHPA----- 509
+ K P +F +++ Q+ ++ D+ ++H A
Sbjct: 333 GYEKKVP---RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389
Query: 510 SLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGD 569
+ Y +S + C AR +L MK N +F F M+LI +V++ + D
Sbjct: 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD 449
Query: 570 MNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIP 629
GALFF++L F+ E A PI K R + Y A A+ + IP
Sbjct: 450 ---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 630 ISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689
I++S ++ + Y+ + + A RFF L F L+R + AV +T + T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPS- 748
+LL + GF + + + + +W YY++P+ Y SL+VNEF G R++ PS
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 749 INQPTIG----------------KVL----LKIRGFSTESNWYWIGVGALTGYSFLFNFL 788
+G V LK+ F ++ W G + G++ F F+
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFV 685
Query: 789 FIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMIL 848
+I + ++ G +RA + S+S G +L
Sbjct: 686 YILLTEFNKGAKQKGEILVFRRGSLKRAK-------KAGETSASNKNDIE-----AGEVL 733
Query: 849 PFQPLSLTFDNMSYFVDMPAEMKTE-----------GVGEDRLQLLHSVSGVFRPGVLTA 897
L+ D+++ DM E + + +++ +L++V G +PG LTA
Sbjct: 734 GSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
LMG SGAGKTTL++VLA R T G I G ++ +F R GY +Q D+H P TV
Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853
Query: 958 YESLLYSAWLRLSSDVDTKKRKM-FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
ESL +SA+LR V +K KM +V+EV++L+E++S D++VG+PG GL+ EQRKRLT
Sbjct: 854 RESLRFSAYLRQPKSV-SKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLT 911
Query: 1017 IAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075
I VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD
Sbjct: 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFD 971
Query: 1076 ELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
LLLL++GG+ +Y G LG SH +I YFE
Sbjct: 972 RLLLLQKGGQTVYFGDLGENSHTIINYFE 1000
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 314 bits (806), Expect = e-100
Identities = 113/239 (47%), Positives = 146/239 (61%), Gaps = 47/239 (19%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
LT+ N++Y V + + QLL+++SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 912 VLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
VLAGRKT G I G+I I+G P + + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 972 DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLLLKRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 1e-78
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 45/239 (18%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
++L+F N++ V + QLL +VSG +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 912 VLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
LAGR+TG + G++ I+G P ++ +F ++ GY Q+DI P +TV E+L+++A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 972 DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
EPTSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+LLLL + GRVIY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 3e-71
Identities = 161/619 (26%), Positives = 281/619 (45%), Gaps = 58/619 (9%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK+VSG+ KP + ++G GAGKTTLM ALA + K ++ SG + G ++ +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
AY+ Q DL +TVRE L F + ++++EK+ +
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVTKKEKRERV---------- 141
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-RGISGGQKKRVTTGEMLVGTANV 363
D VL+ LGL CA+T +G R +G+SGG++KR+ L+ +
Sbjct: 142 --------------DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L+ DE ++GLDS + + + LK + T+I + QP+ E ++LFD IIL++EG++
Sbjct: 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEG 483
Y G D + FF +G CPE ADF +V + +N+ I +
Sbjct: 247 YLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG-----SENESRERI--EKICDS 299
Query: 484 FKSFHMGQQIASDLRVPYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSF 540
F +G+ + + + K+ ++ Y S W F A R WL + R+
Sbjct: 300 FAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPL 359
Query: 541 VYIFKTFQLTFMSLICMTVYFRTEMS-VGDMNGGSRYFGALFFSLLNIMF-NGFAENAMT 598
+ + Q +++ +Y ++ G N GALF L N+ F N F +
Sbjct: 360 LLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN----GALFLFLTNMTFQNVFP--VIN 413
Query: 599 V--LRLPIFYKQ-RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655
V LP+F ++ R L+ S A+ L + +P+ I+ ++ ++TY+ IG A+ F
Sbjct: 414 VFTAELPVFLRETRSGLYRVS-AYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472
Query: 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLR 715
+ N++ L++ + ++ T+G ++ + GGF + D I + +
Sbjct: 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK 532
Query: 716 WGYYISPMMYGQTSLLVNEFLG-GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774
W Y+S YG LL+N++ + + + + P+ G+V+L+ F ++
Sbjct: 533 WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLD 590
Query: 775 VGALTGYSFLFNFLFIAAL 793
+ L F F L AL
Sbjct: 591 LIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 8e-64
Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 4/232 (1%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKNQET 937
R LL +VSGV +PG L A+MG SGAGKTTLM+ LA R G G + ++G P + +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
+S Y +Q+D+ P +TV E L++ A LR+ V K+++ VDEV++ + L+ ++
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 998 MVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIP 1108
+T++CTIHQPS ++FE FD+++L+ GRV Y G ++ P
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGHPCP 266
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 8e-55
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 6/212 (2%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETF 938
++L+ VS G + A++G SG+GKTTL+D ++GR GG G I +G P+ + F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+ Y Q+DI P +TV E+L Y+A LRL RK V E V L+ L +
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV----EDVLLRDLALTR 135
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V+ TIHQP D+F FD +LLL G ++Y+G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 1e-45
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 522 ELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
+A RE+L R+ + +++ Q M+L+ TV+ + S+G +N G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN----RPGLL 56
Query: 581 FFSLLNIMFNGFAENAMTVLR-LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWV 639
FFS+L F+ + +R + ++ Y A+ L L+ +PIS+L + I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 640 ALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMS 699
+ Y+ +G SRFF L + L +AA+ + ++ +G +LL ++
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 700 LGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735
L GF + D + +L+W YY++P+ Y +L NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 6e-44
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 13/214 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KNQETF 938
L VS PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKV 76
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY Q P +TV E+L + A L S + ++R ++E++EL L+ +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G
Sbjct: 134 V-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
+ + E D +++L G++I G
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 6e-42
Identities = 151/590 (25%), Positives = 247/590 (41%), Gaps = 99/590 (16%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
V KK IL +V G VKP +T L+G GAGKTTL+ LA ++ + G G
Sbjct: 769 VKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828
Query: 237 ELNE-FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
L+ F QR+ Y+ Q DLH TVRE+L FS +S+ EK
Sbjct: 829 PLDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSAY-------LRQPKSVSKSEK----- 874
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
M+ V + V+K+L ++ AD +VG G++ Q+KR+T G
Sbjct: 875 --------MEYV-----------EEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGV 914
Query: 356 MLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
LV +L++DE ++GLDS T + ICK ++++ ++ + QP+ ++ FD +
Sbjct: 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRL 973
Query: 415 ILLSEG-QIVYQGP----RDNVLEFFE-HMGFKCPERKGVADFLQEV-----TSKKDQEQ 463
+LL +G Q VY G ++ +FE H KCPE A+++ EV + +Q
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQ-- 1031
Query: 464 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS---DLRVPYDKSQAHPASLVKEKYGISK 520
D+ E +++ Q + + L K++ KY S
Sbjct: 1032 ---------------DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLT-FMSLICMTVYFRTEMSVGDMNGGSRYFGA 579
W F+ R + R + Y++ F LT F +L +F+ S + G A
Sbjct: 1077 WYQFKLVLWRTFQQYWR-TPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFA 1132
Query: 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYP-------SW-AFALPIWLLRIPIS 631
+F + ++FN + LP F QRD SW AF + IP +
Sbjct: 1133 VFMAT--VLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYN 1185
Query: 632 ILDSTIWVALTYYTIGYDPAASR---------FFKQFLAFFSIHNMSLPLYRLVAAVGRT 682
++ TI+ + YY +G+ AS+ F F ++ +L +V +
Sbjct: 1186 LVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ--MVISFNPN 1243
Query: 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732
+ L + + + +S G + + F + Y SP Y +LL
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 6e-41
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+ + RIL DVS V+ ++ +LG G+GKTTL+ A++G++ SG+I + G
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
Q+ AY+ Q D+ +TVRETL ++ A L K +
Sbjct: 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT-------------AILRLPRKSSDAIR 119
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
++ + L A T +G + +GISGG+++RV+
Sbjct: 120 KKRVE----------------------DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ VL +DE ++GLDS T + L Q+ + +I+ + QP + + LFD I+L
Sbjct: 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216
Query: 417 LSEGQIVYQG 426
LS G+IVY G
Sbjct: 217 LSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-38
Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 51/302 (16%)
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG 229
+ + +L L VS V+P + LLGP GAGKTTL+ LAG L SG
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SG 60
Query: 230 KITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+I G+++ + + R Y+ Q + E+TVRE L+F R G LS+
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSK 110
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
E + I + +L++ GL+ A+ V R +SGG
Sbjct: 111 EEAEERI------------------------EELLELFGLEDKANKKV-----RTLSGGM 141
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAP 405
K+R++ L+ +L +DE ++GLD + +I + L+++ VT++++ +L+
Sbjct: 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE--- 198
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKC--PERKGVADFLQEVTSKKDQEQ 463
E +L D +I+L++G+I+ +G + + E F G PER +A+ L+ + K +E+
Sbjct: 199 EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEE 258
Query: 464 YW 465
Sbjct: 259 LA 260
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 2e-38
Identities = 79/235 (33%), Positives = 145/235 (61%), Gaps = 7/235 (2%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L+ V+G+ PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
+G+ Q+DI P++TV E+L++ + LRL + +++ + + V+ + L ++++G
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVD 1116
++HQPS +++ FD +L+L GR ++ G + + YFE S+ F P+ ++
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFG----KGSDAMAYFE-SVGFSPSFPMN 310
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 6e-37
Identities = 43/91 (47%), Positives = 60/91 (65%)
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
G+E RGISGG++KRV+ E LV A+VL D + GLDSST +I K ++ M +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
V+L Q + E YDLFD +++L EG+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-36
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 38/226 (16%)
Query: 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIK 927
T G G ++ +L SGV +PG + ++G G+G +TL+ LA R T G +EGDI
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIH 68
Query: 928 ISGYP--KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+G P + E + Y + D+H P +TV E+L ++ +
Sbjct: 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------- 111
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+ V G+S +RKR++IA LV+ S++ D T GLD+ A +
Sbjct: 112 ---------GNEFV-----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157
Query: 1046 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ +R D T +++Q S +I++ FD++L+L GR IY G
Sbjct: 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-35
Identities = 147/629 (23%), Positives = 282/629 (44%), Gaps = 70/629 (11%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV 242
+++L++V+G +P +T L+G GAGKTTLM LAG K G + G I G +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQET 950
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
R Y Q+D+H ++TVRE+L +S A
Sbjct: 951 FARISGYCEQNDIHSPQVTVRESLIYS--------------------------------A 978
Query: 303 FMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F++ V+ +E + D V++++ LD D +VG G+S Q+KR+T LV
Sbjct: 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420
++++MDE ++GLD+ + + ++ V T++ + QP+ + ++ FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097
Query: 421 QIVYQGP----RDNVLEFFE--HMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRY 474
Q++Y GP ++E+FE K E+ A ++ EV+S + +
Sbjct: 1098 QVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI-------- 1149
Query: 475 IPVSDFVEGFKSFHMGQQ---IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFARE 531
DF E +KS + Q+ + +L P +Y S W F++C ++
Sbjct: 1150 ----DFAEHYKSSSLYQRNKALVKELSTP---PPGASDLYFATQYSQSTWGQFKSCLWKQ 1202
Query: 532 WLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
W R+ + + F +L+ T++++ + N + GA++ ++L + N
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 592 FAE-NAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650
+ M + +FY++R Y + +A+ + IP ++ +T + + Y + ++
Sbjct: 1263 CSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEW 1322
Query: 651 AASRFFK-QFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDD 709
A++FF F++FFS + V+ +V + F L + GF + +
Sbjct: 1323 TAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNL-FSGFFIPRPK 1381
Query: 710 IEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI-NQPTIGKVLLKIRGFSTES 768
I + W Y+I P+ + L+V+++ G + K P PTI + G+ +
Sbjct: 1382 IPKWWVWYYWICPVAWTVYGLIVSQY--GDVEDTIKVPGGAPDPTIKWYIQDHYGY--DP 1437
Query: 769 NWYWIGVGALTGYSFLFNFLFIAALAYLN 797
++ L G++ F F+F + LN
Sbjct: 1438 DFMGPVAAVLVGFTVFFAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-32
Identities = 142/577 (24%), Positives = 252/577 (43%), Gaps = 85/577 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRASGKITYCGHELNEFVPQ 244
IL V+G+ P + +LGP G+GK+TL+ ALAG++ G + +G I + + + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF--TGTILANNRKPTKQILK 140
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT +++Q D+ + +TVRETL F + L L+++EK
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEK-------------- 178
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LV + V+ LGL C +T++G+ RGISGG++KRV+ ++ ++L
Sbjct: 179 ----------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++GLD++ +++ L + T++ ++ QP+ Y +FD +++LSEG+ ++
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQP---------YRY- 474
G + + +FE +GF ADFL ++ + Q + +P Y
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 475 --------IPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKW-ELFR 525
I +S F + F V ++ H +S ++ IS W F
Sbjct: 348 LAPKVKAAIEMSHFPQANARF-----------VGSASTKEHRSS---DRISISTWFNQFS 393
Query: 526 ACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLL 585
R K SF + FQ+ +L+ +++ + D G LFF +
Sbjct: 394 ILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHS-----DFRDVQDRLGLLFFISI 447
Query: 586 NIMFNGFAENAMTVLRLP----IFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVAL 641
F G + +V P IF K+R Y ++ + + +P+ ++ TI++ +
Sbjct: 448 ---FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504
Query: 642 TYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLG 701
TY+ G P F L +S L + A ++T+ T +L + G
Sbjct: 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTG 564
Query: 702 GFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738
GF + K + + W YIS Y LL+N G
Sbjct: 565 GFYVHK--LPSCMAWIKYISTTFY-SYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-32
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VP 243
ILKD SG+VKP M L+LG PG+G +TL+ ALA + ++ G I Y G EF
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274
Y+S+ D+H +TVRETLDF+ RC G
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-29
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
+ + L VS PG+ L+G +GAGKTTLM +LA + G I + P
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-- 67
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ R GY Q P TV E L Y AWL+ + +K+ K VDEV+ELV L
Sbjct: 68 -QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDR 123
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 124 AKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELG 177
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
R V+ + H D+ +++ +L G++++ G
Sbjct: 178 EDRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 21/210 (10%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA--RVSGYC 945
G + L+G +GAGKTT + +L G R T G I+GY + A + GYC
Sbjct: 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYC 80
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q D +TV E L + A L+ + K V+ ++ ++ L +
Sbjct: 81 PQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKRAR----- 132
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++ T H
Sbjct: 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTH- 190
Query: 1066 PSIDIFEAF-DELLLLKRGGRVIYAGPLGH 1094
S+D EA D + ++ G++ G
Sbjct: 191 -SMDEAEALCDRIAIMSD-GKLRCIGSPQE 218
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET--- 937
L +S + G ++G +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 938 FARVSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
R G QN P TV E + + + + ++R V+E +ELV L+
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLE 125
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G+T++ H + E D +++L+ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L VS +PG A++G +GAGK+TL+ + G + T G I++ G P +E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 941 VSGYCEQN---DIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLND 996
+ GY Q D P ++V + +L + +K K VDE +E V L L D
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T++ H + + E FD +LLL R V+ +G
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-25
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K ++LK+VSG KP +T ++GP GAGK+TL+ ALAG+ L SG++ G
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
L++ ++ Y+ Q D+ H +TVRETL F+ + G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKNQETF 938
+L +S G +T ++G +G+GK+TL+ LAG G++ + G + +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A+ Y Q+ +TVYE +L + S D + V+E +EL+ L+
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI----VEEALELLGLEH 130
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1052
L D V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 131 LADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 1053 VDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
+ G TVV +H D+ A D L+LLK G V P
Sbjct: 186 REKGLTVVMVLH----DLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L +S G +TAL+G +GAGK+TL+ + G G+IKI G P +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 941 VSGYCEQNDIHSPY--VTVYE---SLLYSA--WLRLSSDVDTKKRKMFVDEVMELVELKS 993
GY Q +TV + Y W R + D +K VDE +E V ++
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGMED 131
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L D +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 132 LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G+TV+ H + + FD ++ L R +I +GP
Sbjct: 187 QEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-23
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
+K S + T+G+ +LK RG TE+ WYWIGVGAL G++ LFN LF AL YLNP+G S
Sbjct: 2 SKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKSQ 61
Query: 804 STV 806
+ V
Sbjct: 62 AIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 20/221 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
KT G G +++Q L VS G A++G SG+GK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
IS + + R G+ Q+ + P +T E++ L L+ V K+R+ +
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRERAE 122
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
E++E V L + S LS Q++R+ IA L +P II DEPT LD+
Sbjct: 123 ELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
VM +R + G T+V H P ++ E D ++ L+ G
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 2e-21
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETF 938
L +S G + L+G +GAGKTTL+ ++ G + G+IK+ G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRG 1083
++ + H + D + +L G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 5e-21
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G+G ++++ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
++ + + R G+ QN + P +TV E++ + S K+ +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
EV+ L + S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 127 EVLGLEDRLLKKK-------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
V+ +R + G+T++ H P ++ + D ++ LK G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 7e-21
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKN 934
R L VS G L+G +G+GK+TL+ +L G + T G + D + K+
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 935 QETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ G QN D TV + + + L + + + V E +ELV L+
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALELVGLEE 130
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L D LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 131 LLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185
Query: 1054 -DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ G+T++ H +++ + + +++ G+++ G
Sbjct: 186 EEGGKTIIIVTH--DLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
+L+ VS G + AL+G SG+GK+TL+ +AG G I ++
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R G Q+ P++TV E++
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLENIAL---------------------------------- 99
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1056
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRG 1083
TVV H D+ EA D +++L+ G
Sbjct: 152 ITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-- 933
D L ++ + G LTAL+G SGAGK+TL+++L G +G+I+++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 934 -NQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
+ E + + + QN PY+ T+ E++ L+ + + + ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQA 434
Query: 990 ELKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+++ ++ +TV+ H+ D +A D +++L GR++ G
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 34/86 (39%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGG++KRV+ LV ++L++DE ++GLDSS+ Q+ L+++ T+I ++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQG 426
QP+ E ++LFD ++LLS+G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
++L +S + G + +G +GAGKTT M ++ G + G I Y KN E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R+ E + P +T E+L A L RK +DEV+++V LK
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLKDSAKKK 123
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V+ + H S +I + D + ++ G++I G
Sbjct: 179 VLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 5e-20
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 50/221 (22%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISG 930
VG +L +S G + ++G +GAGK+TL+ LAG + + G I ++
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
Query: 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ AR Y Q +EL+
Sbjct: 66 LSPKE--LARKIAYVPQ-------------------------------------ALELLG 86
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L L D + LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 87 LAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1051 NTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G+TVV +H ++ D ++LLK GR++ G
Sbjct: 142 RLARERGKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 7e-20
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA 939
+L +S G + AL G +GAGKTTL +LAG +++ G I ++G P +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 940 RVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+ GY Q+ D +V E LL L+ + + + V++ ++L +L +
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQ-----AETVLKDLDLYALKER- 122
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 123 --HP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRG 1083
V+ H + + D +LLL G
Sbjct: 179 VIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
VP K ++L ++SG VKP +T L+G GAGKTTL+ LAG+ +G+I G
Sbjct: 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGR 71
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTR 278
L++ QR+ Y+ Q D+H +TVRE L FS R L V R
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCE 946
PG AL+G SG GKTTL+ ++AG R G I ++G P + R G
Sbjct: 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER----RNIGMVF 78
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ P++TV E++ + LR + + R V E++ELV L+ L +
Sbjct: 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRYP-----HE 130
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1065
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G T + H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH- 189
Query: 1066 PSIDIFEAF---DELLLLKRG 1083
D EA D + ++ G
Sbjct: 190 ---DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 3e-19
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQE 936
+Q + VS +PG +T L+G +GAGKTT + +LAG G+ + G+ +E
Sbjct: 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKE 72
Query: 937 TFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R G+ + +T E+L Y A L + R ++E+ + + ++ L
Sbjct: 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEEL 129
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
D VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R
Sbjct: 130 LDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G+ ++ + H ++ D +++L R GRV+Y G
Sbjct: 185 LGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 29/225 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV- 941
L VS PG AL+G SGAGK+TL+ L G G + I G N+ +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 942 -----SGYCEQNDIHSPYVTVYESLL---------YSAWLRLSSDVDTKKRKMFVDEVME 987
G Q ++V E++L + + L + K++ +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
V L LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 1048 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
++ + G TV+ ++HQ + E D ++ LK GR+++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 5e-19
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1063
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1064 HQPSIDIFEAFDELLLLKRG 1083
H P A D +++LK G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 7e-19
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKNQ 935
+L V R G + A++G SG+GK+TL+ ++ G R G I+G DI
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI-SGLSEAEL 72
Query: 936 ETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
R G Q + + TV+E++ + LR + ++ +E+ E+V
Sbjct: 73 YRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVL 118
Query: 991 LKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 119 EK-LE--AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175
Query: 1046 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+R+ G T + H F D + +L G+++ G
Sbjct: 176 DDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 85.6 bits (213), Expect = 1e-18
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK + + D+S V + LLG GAGKTT + L G+L SG G+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67
Query: 240 ---EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ Q Y Q D E+TVRE L F R G L + E +
Sbjct: 68 TDRKAARQSLG-YCPQFDALFDELTVREHLRFYARLKG----------LPKSEIKE---- 112
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+ +L++LGL A+ +SGG K++++
Sbjct: 113 --------------------EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+G +VL +DE ++GLD ++ I + ++ ++I+ E L D I +
Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAI 204
Query: 417 LSEGQIVYQG 426
+S+G++ G
Sbjct: 205 MSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 1e-18
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L D+S +K L++GP G+GK+TL+ L G LG SG++ G +L + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 245 --RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ D TV E + F LG+ P+ EI+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL--------------------PEEEIE 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ L+++GL+ D +SGGQK+RV +L
Sbjct: 113 E--------------RVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
++L +DE + GLD + ++ + LK++ T+I+ T+DL D +I
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIV-------THDLDLLLELADRVI 205
Query: 416 LLSEGQ 421
+L +G+
Sbjct: 206 VLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 47/256 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ +L+D+S V+ +T L+GP GAGK+TL+ A+ G L +SG+I G + +
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKR 71
Query: 242 VPQRTCAYISQH-DLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Y+ Q + +TV++ + LG + L++++K+
Sbjct: 72 RKRLRIGYVPQKSSVDRSFPITVKDVVL-----LGRYGKKGWFRRLNKKDKEKV------ 120
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
D L+ +G++ D +G+ +SGGQK+RV L
Sbjct: 121 -------------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILL 417
++L +DE TG+D + +I LK++ T+++ L FD +I L
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICL 212
Query: 418 SEGQIVYQGPRDNVLE 433
++ GP + VL
Sbjct: 213 -NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KN 934
Q L +++ PG A++G SGAGK+TL+ + G I + G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELV 989
R G Q+ +TV E++L Y R +++ K +E V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
L LS Q++R+ IA L P +I DEP + LD + + VM +
Sbjct: 134 GLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 1050 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ + G TV+ +HQ +D+ + + + ++ + G +++ G
Sbjct: 189 KRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 6e-18
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLY------SAWLRLSSDVDTKKRKMFVDEVMEL 988
AR EQ+ + +TV + + S W S D VD +
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-AGDSPHDAA----VVDRALAR 124
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
EL L D +S LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 125 TELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
VR TG TVV +H +++ ++ + +++ GGRV+ AGP
Sbjct: 180 VRELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGPPRE 223
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-18
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKN 934
++Q + VS G +T L+G +GAGKTTL+ ++A + G + I G
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTV 67
Query: 935 QETFA---RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
++ ++ + +++ +T E+L Y A L S + K R + E+ + ++L
Sbjct: 68 RDPSFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQL 123
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
D VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 124 LEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ GR V+ + H ++ D +++L + G V+ G
Sbjct: 179 LKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 9e-18
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQET 937
Q L V+ G + A++G SGAGK+TL+ L G T G I + I+ +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
R G Q P ++V E++L Y++ R + +K+ D+ L L
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-----DKAQALDAL 132
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR- 1050
+ + S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 133 ERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 1051 -NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
N D G TV+ +HQ +D+ + + + ++ + GR+++ GP
Sbjct: 193 INQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQE---T 937
L VS RPG AL+G +GAGK+TL +L T Y+ EG I ++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR+ +Q + ++V ++L Y A L S + + R + E++ + L D
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1056
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093
+V+ H +D EA D L++L R GRV+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAA 217
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
+ +S + G L+G SG GKTTL+ ++AG + + G I I+ P +
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R G Q+ P++TV E++ + L++ + + K V+E +ELV L+ D
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRK- 133
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1058
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 134 ----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 1059 VVCTIHQPSIDIFEAF---DELLLLKRG 1083
V H D EA D + ++ G
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 34/213 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKNQETFARV 941
+T + G SGAGK+TL+ +AG + GG I + KI+ P+ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
G Q P++ V E+L + L+ + ++ ++ VDE+++L+ L L +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG--LKRKRN---REDRISVDELLDLLGLDHLLNR---- 127
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1061 CTIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
H S EA D ++++ GR+ Y G
Sbjct: 187 FVTHDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKNQETFA 939
L ++ G L+G SGAGK+TL+ ++ + T G I +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R G Q+ P VYE++ ++ + + +KR V +ELV L + ++
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR---VPAALELVGLSHKHRAL 133
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+ LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 134 P-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1059 VVCTIHQPSI 1068
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 34/221 (15%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
R G + +G +GAGKTT + +L R T G +++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 947 QNDIHSPYVTVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
Q Y +V E L + L + + + +E++EL EL D VG
Sbjct: 73 Q------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG- 123
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 1062 TIHQPSIDIFEAFDEL---LLLKRGGRVIYAGPLGHESHKL 1099
T H + EA D+L + + GR+I G +L
Sbjct: 180 TTH----YMEEA-DKLCDRIAIIDHGRIIAEGTPEELKRRL 215
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 14/193 (7%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKN 934
++L ++ G + AL+G +GAGK+TL+ L G R G + D + Y +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 935 QETFARVS-GYCEQN-DIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVEL 991
R G Q+ D V + + + L LS ++ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR----VREALTAVGA 117
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L + LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 118 SGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1052 TVDTGRTVVCTIH 1064
G TVV + H
Sbjct: 173 LRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L V+ G L+G SG GK+TL+ ++AG T G I ++ P +
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R QN P++TVYE++ + LR + KR V EV +L+ L+ L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNR-- 129
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
P LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 130 -KP--LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-17
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 64/274 (23%)
Query: 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
L + L S V+ ++DVS + +T LLG GAGKTTL+ +A L D SGK
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGK 58
Query: 231 ITYCGHELNEFVPQRTCAYISQH-DLHHGE------MTVRETLDFSGRCLGVGTRYELLA 283
+T G + R +++ + + GE +T RE L + R L
Sbjct: 59 VTIDGVDT-----VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LN 103
Query: 284 ELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343
LSR+E +A I K L L D VG
Sbjct: 104 GLSRKEIKA------RIAELSKR------------------LQLLEYLDRRVG-----EF 134
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVA 399
S G K++V LV ++L +DE ++GLD T + F+KQ+ + ++ + I+
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM- 193
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E L D +I+L +G++V +G + +
Sbjct: 194 -----QEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 4e-17
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 39/201 (19%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQ 935
L ++ V RPG + L+G +GAGKTTL ++++G R T G +G+ I+G P ++
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHE 71
Query: 936 -------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDE 984
TF + P +TV E+++ +A R L ++ + +
Sbjct: 72 IARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 985 VMELVELKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
EL+E VGL + LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLE-------RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1040 RAAAIVMRTVRNTVDTGRTVV 1060
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 9e-17
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGG--YIEGDIKISGY 931
L +S G +TAL+G SG GK+TL+ D++ G G ++G I
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK-DIYDL 72
Query: 932 PKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ R G Q P ++Y+++ Y L ++ V+E +
Sbjct: 73 DVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKL--KEELDERVEEALRK 126
Query: 989 VEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
L + D + L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 127 AALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 1e-16
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 35/229 (15%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 928
KT G G + L +S G AL+G SG GK+TL+ ++AG R T G++ +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLV 63
Query: 929 SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
G P R GY Q D P++TV +++ L+ V + + + EL
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEAR---ERAEEL 115
Query: 989 VELKSLNDSMVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+E +VGL G LS R+R+ +A L +P ++ +DEP S LDA
Sbjct: 116 LE-------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF---DELLLL-KRGGRVI 1087
+ + + +TG+TV+ H DI EA D +++L R GR++
Sbjct: 169 QLQEELLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 1e-16
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 30/224 (13%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
SL F +S R L VS PG AL+G SGAGK+TL++
Sbjct: 319 APSLEFSGVSV------------AYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLN 366
Query: 912 VLAGRKTGGYIEGDIKISGYPK---NQETFARVSGYCEQNDIHSPYV---TVYESLLYSA 965
+L G EG I ++G P + +++ + Q+ P++ T+ E++ +
Sbjct: 367 LLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQH----PFLFAGTIAENIRLA- 419
Query: 966 WLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
R + + + + E V L D+ +G G +GLS Q +RL +A + +
Sbjct: 420 --RPDASDAEIREALERAGLDEFVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRD 476
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
++ +DEPT+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 477 APLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 1e-16
Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 59/257 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L +VS ++P ++G G+GK+TL+ L G G + G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 244 QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R Y+ Q L +G T+R+ + LG P + +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------------------PYADDEE 570
Query: 303 FMKAVAVAGQETSLVTDYV-LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG VT++V GLD +G E R +SGGQ++ V L+
Sbjct: 571 ILRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDP 620
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFDDIIL 416
+L +DE ++ +D+ + + LK+ + T+++ +LL DL D II+
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIV 671
Query: 417 LSEGQIVYQGPRDNVLE 433
+ G+IV GP+D VLE
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 43/220 (19%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQ---ETFARVSGY 944
PG A++G SG+GK+TL+ +L G Y +G I + G N + R GY
Sbjct: 496 IPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 945 CEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Q+ L+S +R L + T +E++E +L ++ +
Sbjct: 552 VLQDP-----------FLFSGSIRENIALGNPEATD------EEIIEAAQLAGAHEFIEN 594
Query: 1001 LP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LP G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL- 653
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ GRTV+ H+ S + D +++L G+++ G
Sbjct: 654 QILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
L +S + G L AL+G SGAGK+TL+ ++AG G I + ++ N
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G+ Q+ P++TV +++ + +R + + V+E++ LV+L+ L
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLA 131
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1054
D P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 DRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T V H + E D +++L + GR+ GP
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ---ET 937
L +VS R G A++G G+GK+TL+ +LAG Y G + + G Q
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSGSVLLDGTDIRQLDPAD 75
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q D+ Y T+ +++ A L+ D ++ EL + D
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRDNITLGA--PLADDE----------RILRAAELAGVTDF 122
Query: 998 MVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ P GLS QR+ + +A L+ +P I+ +DEPTS +D + +
Sbjct: 123 VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
+R + +T++ H+PS+ + D ++++ G V
Sbjct: 183 LRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 41/225 (18%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQETFAR 940
L ++ +PG A++G +GAGKTTL+++L Y +G I I G +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 941 VS---GYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ G Q ++ T+ E++ R ++ + EV+E +
Sbjct: 75 LRSMIGVVLQ----DTFLFSGTIMENIRLG---RPNATDE---------EVIEAAKEAGA 118
Query: 995 NDSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+D ++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ + GRT + H+ S I A D++L+L G++I G
Sbjct: 179 QEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDD-GKIIEEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-16
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
R G + L+G +GAGKTT + +L + T G ++G+ + R G
Sbjct: 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRRIGIVF 79
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ +T +E+L A L V +R+ +DE+++ V L D +V
Sbjct: 80 QDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLV-----KT 131
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1065
S R+RL IA LV P ++F+DEPT GLD + A V + + G T++ T H
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH- 190
Query: 1066 PSIDIFEA---FDELLLLKRGGRVIYAG 1090
+ EA D + ++ GR+I G
Sbjct: 191 ---YMEEAEQLCDRVAIIDH-GRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQE 936
+L ++ G + A++G SG+GK+TL++++ + G Y+ G K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 937 TFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSL 994
F R GY QN TV E+L L+ +KR+ E +E V L L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVGLNLKL 128
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ LS +++R+ +A ++ P +I DEPT LD + V+ + D
Sbjct: 129 KQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 1055 TGRTVVCTIHQPSI 1068
G+T++ H P +
Sbjct: 183 EGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 54/256 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL D+S + +T +LGP G+GK+TL+ LAG L SG++ G ++ P+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ AY+ Q +TV E L L R
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYE-----------------LVLLGRY-------------P 103
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +E + + L++LGL+ AD V + +SGG+++RV L
Sbjct: 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETP 158
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIIL 416
+L +DE ++ LD + ++ + L+ + +T+++ L +DL D +IL
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-------HDLNLAARYADHLIL 211
Query: 417 LSEGQIVYQGPRDNVL 432
L +G+IV QG + VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFARVSGYCE 946
G + A++G SG+GK+TL+ ++ G R G I DI + E R+ G
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV-- 1004
Q +TV+E++ + LR + + + ELV +K L +VGL G
Sbjct: 92 QQGALFSSLTVFENVAFP--LREHTKLPES-------LIRELVLMK-LE--LVGLRGAAA 139
Query: 1005 ----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1059
S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D G TV
Sbjct: 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
+ H + D + +L G+VI G
Sbjct: 200 IMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 22/215 (10%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKN 934
R+ L +S G + L+G +GAGKTT + ++ G I G++ G P +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLD 65
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R+ GY + P + V + L+Y A L+ + ++R +DE +E +EL
Sbjct: 66 IAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEY 121
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ V LS ++++ ++ +P ++ +DEP SGLD ++ +R
Sbjct: 122 ANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 1055 TGRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIY 1088
G+TV+ + HQ +++ E D +LLL +G V+Y
Sbjct: 177 AGKTVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 4e-15
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 60/209 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
+L VS +PG A++G SG+GK+TL+ +L T G I + + + E+
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL--DLES 73
Query: 938 FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ Y Q+ P++ T+ E++L
Sbjct: 74 LRKNIAYVPQD----PFLFSGTIRENIL-------------------------------- 97
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
SG QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 98 ----------SGG---QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LA 143
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G+TV+ H+ S D +++L G
Sbjct: 144 KGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 8e-15
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQ 947
+ G L+G +GAGKTT + +L G G I + G P + + RV G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV-GVVPQ 87
Query: 948 NDIHSPYVTVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
D P TV E+LL + + LS+ R + V ++E +L++ D+ VG
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENKADAKVG-----E 138
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
+L + + LKDVS + P L+GP GAGK+TL+ L G + SG +
Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLID 61
Query: 235 GHELNEFVPQ------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ++N+ + R I Q + ++V E + SGR T L
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENV-LSGRLGRRSTWRSLFGLFP 118
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ EKQ + L+ +GL A D++ SGG
Sbjct: 119 KEEKQRAL-------------------------AALERVGLLDKAYQRA-DQL----SGG 148
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
Q++RV L+ ++ DE LD +++ Q+ LK++ +T+IV+L Q
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--- 205
Query: 407 TYDL----FDDIILLSEGQIVYQGPRDNV 431
DL D I+ L +G+IV+ GP +
Sbjct: 206 --DLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 9e-15
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET 937
+LL VS RPG + A++G +GAGK+TL+ L+G + G++ ++G P N E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR QN + TV E + + S + ++ + + + +L L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGR-IPHRSGREPEEDERIAAQALAATDLSGLAGR 131
Query: 998 MVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 DY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G V+ +H ++ A D ++LL + GRVI +G
Sbjct: 187 LAREGGAVLAVLHDLNLAAQYA-DRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 51/254 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L+D+S + P ++G G+GK+TL+ L G G+I G +LN+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 245 --RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R Y+ Q L G ++RE + P+ +
Sbjct: 545 LRRQVGYVLQDPFLFSG--SIRENIALG-------------------------NPEATDE 577
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG ++ I L + DT VG E +SGGQ++R+ L+
Sbjct: 578 EIIEAAQLAG-----AHEF---IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--PETYDLFDDIILLSE 419
+L +DE ++ LD T I + L Q + T+I+ A T D II+L +
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ--ILQGRTVIII----AHRLSTIRSADRIIVLDQ 682
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG + +L
Sbjct: 683 GKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-14
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQET 937
+ VS R G L+G SG+GK+TL +LAG + G I D+ ++G
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG--GELRR 364
Query: 938 FARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SL 994
R Q+ S P +TV + L LR+ +R+ V E++ELV L
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
D LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPHE-----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-14
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
G + Q+L VS G + AL+G +GAGKTTL+ + G G I I+G
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R GY + P +TV E+LL A+ R + + ++ V EL
Sbjct: 68 P----PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYEL 118
Query: 989 V-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 119 FPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 1048 TVRNTVDTGRTVV 1060
+R D G T++
Sbjct: 174 AIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 60/275 (21%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--- 231
+L LKDVS ++ LL+GP G+GK+TL+ L G L K SG++
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKP--TSGEVLVD 64
Query: 232 -TYCGHELNEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
E + ++ + Q+ TV + + F LG+
Sbjct: 65 GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-------------- 110
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
P EI+ L+++GL+ D + SGGQK+
Sbjct: 111 ------PREEIEE--------------RVAEALELVGLEELLDRPPFNL-----SGGQKQ 145
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV +L +L +DE + GLD ++ + LK++ T+I+ T+D
Sbjct: 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THD 198
Query: 410 L------FDDIILLSEGQIVYQGPRDNVLEFFEHM 438
L D +++L +G+I+ G + E +
Sbjct: 199 LELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-14
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 61/266 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
L D++ +K ++T L+G GAGK+TL+ L G L G+I G +L + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 244 --QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
++ +++SQ+ L G T+RE + LLA ++ EI
Sbjct: 392 AWRKQISWVSQNPYLFAG--TIRENI--------------LLARPDASDE--------EI 427
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
A + + ++V K GL DT++G E G+SGGQ +R+ L+
Sbjct: 428 IAALDQAGLL--------EFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSP 474
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDII 415
A++L +DE + LD+ T I + L++ T++V T+ L D I+
Sbjct: 475 ASLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI-------THRLEDAADADRIV 525
Query: 416 LLSEGQIVYQGPRDNVLE---FFEHM 438
+L G++V QG + + E + ++
Sbjct: 526 VLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 48/248 (19%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
SVR L D+S V+P LLGP G GKTTL+ +AG D SG+I G ++
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGV 67
Query: 242 VP-QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P +R + Q H +TV E + F + GV AE+ R ++
Sbjct: 68 PPERRNIGMVFQDYALFPH--LTVAENIAFGLKLRGVPK-----AEIRARVREL------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+++GL+ + +SGGQ++RV L
Sbjct: 115 -----------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALA 146
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ ++ + LK++ L +T I E L D I +++
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN 205
Query: 419 EGQIVYQG 426
EG+IV G
Sbjct: 206 EGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA 939
L +S G + G +GAGKTTL+ +LAG R G + + +E++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYH 74
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ Y +T E+L + W R + + E + V L L D
Sbjct: 75 QALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLED--- 125
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
LP V LS Q++R+ +A ++ + +DEP + LD A++ + G V
Sbjct: 126 -LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 1060 VCTIHQP 1066
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
G A++G SG GK+TL+ ++AG + T G + D + P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
D P++TV +++ LR + + E++ELV L D P LS
Sbjct: 81 DALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK---YPHQ--LS 132
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
R+R+ IA L P ++ +DEP LDA + + +T +TV+ H
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH--- 189
Query: 1068 IDIFEAF---DELLLLKRGGRVI 1087
D+ EA D +++L I
Sbjct: 190 -DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFA 939
L VS PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R C Q D H TV E+L + D +E+ +E L D +
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALERVGLADWLR 455
Query: 1000 GLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
LP GL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1049 VRNTVDTGRTVVCTIHQP 1066
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
Q L V+ G L AL+G SG+GK+TL+ ++AG + G I+++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 939 A-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R G+ Q+ ++TV +++ + +R K R V+E++ELV+L+ L D
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR 126
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1058 -TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T V H + E D ++++ G++ G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 11/187 (5%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQET 937
+++ VS G + L+G +GAGKTT ++ G R G I D IS P +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q ++VY++L+ A L++ D+ ++R+ +E+ME ++ L DS
Sbjct: 77 -RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
M G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 M----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1058 TVVCTIH 1064
V+ T H
Sbjct: 189 GVLITDH 195
|
Length = 241 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQETFARVS-GYCEQND 949
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 950 IHSPYVTVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
TV E+LL + + +S T++ + + ++E L+S D+ V S LS
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADARV-----SDLS 174
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH---- 230
Query: 1069 DIFEAFDEL---LLLKRGGRVIYAGPLGHESHKLIE 1101
E + L L + GR I G H LI+
Sbjct: 231 -FMEEAERLCDRLCVLEAGRKIAEG----RPHALID 261
|
Length = 340 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
L VS G L AL+G SG+GKTTL+ ++AG R G I G + P
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS---DVDTKKRKMFVDEVMELVEL 991
+ R G+ Q+ ++TV++++ + ++ S + K V E+++LV+L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK--VHELLKLVQL 126
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L D P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 127 DWLADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181
Query: 1052 TVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
D T V H + E D ++++ +G
Sbjct: 182 LHDELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 866 MPAEM--------KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917
MPAE KT G GE L +L V V + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 918 TGGYIEGDIKISGYP---KNQETFARVS----GYCEQNDIHSPYVTVYESLLYSAWLRLS 970
G++++ G P +++ A + G+ Q+ P +T E++ LR
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
S D++ L+E L + P LS +++R+ +A P ++F
Sbjct: 119 SSADSRAG------AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFA 170
Query: 1031 DEPTSGLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
DEPT LD + A ++ R + G T+V H P +
Sbjct: 171 DEPTGNLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 68/257 (26%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L VS + M LLGP GAGKTTLM LA SG I G ++ +
Sbjct: 11 GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 242 VP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R Y+ Q + TVRE LD+ G+ P E
Sbjct: 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PSKE 106
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ A V D VL+++ L A +G +SGG ++RV + LVG
Sbjct: 107 VKA---RV-----------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVG 147
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQM---------VHIL-DVTMIVALLQPAPETYD 409
++L +DE + GLD + L ++ HI+ DV +
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC----------- 196
Query: 410 LFDDIILLSEGQIVYQG 426
+ + +L++G++V++G
Sbjct: 197 --NQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 4e-14
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFA 939
Q LH+V G + AL+G SG+GK+TL+ L+G TG I++ G +E
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--G 75
Query: 940 RVSGYCEQNDIHSPYV----------TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
R++ ++ ++ Y+ +V E++L A L S + + +
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQR 132
Query: 990 ELKSLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L++L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A I
Sbjct: 133 ALQAL--TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 1045 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
VM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
L +V+ V RPG + L+G +GAGKTTL +++ G + + G + I+G P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHR 75
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVE--LK 992
Q P +TV E++ A L LS + + + E E L+
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 993 SLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
VGL LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 136 -----FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1048 TVRNTVDT-GRTVV 1060
+R D G T++
Sbjct: 191 LIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI----- 928
G G R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 929 SGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
G + + R + GY Q ++T +++ + L L ++ ++ + ++E
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLE 127
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
V L D + P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+
Sbjct: 128 AV---GLGDHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 1048 TVRNTV-DTGRTVVCTIHQPSI 1068
++ + G T++ H I
Sbjct: 183 LMQKLAREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
L VS G L ++G SG GKTTL++++AG T G I+++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
G QN+ P++ V +++ + LR ++ +R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG 1056
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETG 183
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRG-GRVIYAGPLG 1093
+ V+ H DI EA L++L G GRV+ PL
Sbjct: 184 KQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 6e-14
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 57/250 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---- 240
+L+DVS VKP ++GP GAGK+TL+ A+ G L SG I G L +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLEKERKR 69
Query: 241 --FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+VPQR D ++VR+ + +G+ L LS+ +K
Sbjct: 70 IGYVPQR---RSIDRDF---PISVRDVV-----LMGLYGHKGLFRRLSKADKAKV----- 113
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D L+ +GL AD +G+ +SGGQ++RV LV
Sbjct: 114 --------------------DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALV 148
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIIL 416
++L +DE G+D T I + L+++ +T++V L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 417 LSEGQIVYQG 426
L +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 6e-14
Identities = 71/277 (25%), Positives = 110/277 (39%), Gaps = 64/277 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +LKDV+ ++ +LLGP G GK+TL+ +AG SG+I G ++ +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 243 PQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
P+ R A + Q H MTV E + F L K G+
Sbjct: 72 PEKRGIAMVFQNYALYPH------MTVYENIAFG---L----------------KLRGVP 106
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
EID K V V K+LGL+ + +SGGQ++RV
Sbjct: 107 KA-EID---KRVKE-----------VAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
LV V +DE + LD+ + +K++ L T I E L D I+
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G + ++ P VA F+
Sbjct: 206 VMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-NQETFARVS-GYCEQNDIHSPYV 955
L+G +GAGK+T+ +L G + G I + G P ++ ARV+ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 956 TVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
TV E+LL + + +S T++ + + ++E L+S D V L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1074
LT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H E
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH-----FMEEA 198
Query: 1075 DEL---LLLKRGGRVIYAGPLGHESHKLIE 1101
+ L L + GR I G H LI+
Sbjct: 199 ERLCDRLCVLESGRKIAEG----RPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-14
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 866 MPAE--------MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917
MPAE K+ G GE L +L V V + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60
Query: 918 TGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
G G++ + G P +Q + A+ G+ Q+ + P + E++ A LR
Sbjct: 61 DGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE 118
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
S ++ L+E L + LP + LS +++R+ +A P ++F
Sbjct: 119 SSRQSRNG------AKALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFA 170
Query: 1031 DEPTSGLD 1038
DEPT LD
Sbjct: 171 DEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 56/271 (20%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L H K+RS+ ++D+S + + LG GAGK+T + L G L L SGK+
Sbjct: 26 LNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKV- 81
Query: 233 YCGHELNEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
+N P R Y+ L M + L + L E+L +
Sbjct: 82 ----RVNGKDPFRRREEYLRSIGL---VMGQKLQLWW---DLPALDSLEVLKLIYE---- 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
PD D F + + D++ +IL L+ + +R+ +S GQ+ R
Sbjct: 128 ---IPD---DEFAERL-----------DFLTEILDLE----GFLKWPVRK-LSLGQRMRA 165
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ VL++DE + GLD + I +FLK+ T+++ T+ F
Sbjct: 166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-F 217
Query: 412 DDI-------ILLSEGQIVYQGPRDNVLEFF 435
DDI +L+ +GQ+V+ G + E F
Sbjct: 218 DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 56/192 (29%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKNQET 937
LH VS R G L G SGAGKTTL+ +L G T G ++I+G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R G Q+ P TVYE++ L +V KK + V + L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENV------ALPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1057 RTVVCTIHQPSI 1068
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 52/274 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S + L DV+ V + LLGP G+GK+TL+ +AG D SG+I G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVH 68
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ R ++ QH +TVR+ + F G+ R K
Sbjct: 69 ARDRKIGFVFQHYALFKHLTVRDNIAF-----GLEIR----------------KHPKA-- 105
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ + +L+++ L +GD +SGGQ++RV L
Sbjct: 106 -----------KIKARVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
VL +DE LD+ ++ +L+++ + VT V + E ++ D I+++S G+
Sbjct: 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT-VFVTHDQEEAMEVADRIVVMSNGK 208
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
I G D E ++H P V FL EV
Sbjct: 209 IEQIGSPD---EVYDH-----PANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 9e-14
Identities = 76/325 (23%), Positives = 129/325 (39%), Gaps = 50/325 (15%)
Query: 772 WIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSS 831
+ VGAL + L + +G+ S + QRAS A
Sbjct: 265 SLTVGALAAFILYLLRLL----TPILQLGEVVSLL-------QRASA--------AAERL 305
Query: 832 SKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFR 891
+ + V + L S+ F+N+S+ + +L +S
Sbjct: 306 FELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIE 353
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQETFA---RVSGYC 945
PG A++G SG+GK+TL+ +L + G+I I G + + G
Sbjct: 354 PGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q D T+ E++ +++ + E + L D++VG GV
Sbjct: 409 SQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV- 464
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHR 523
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAG 1090
S + D +++L GR++ G
Sbjct: 524 LS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-14
Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 33/230 (14%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKIS 929
G G R+ L+ +S G +TAL+G +G GK+TL+ A R ++G GD IS
Sbjct: 11 GYGTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPIS 67
Query: 930 GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY------SAWLRLSSDVDTKKRKMFVD 983
Q AR Q+ + +TV E + Y S W RLS++ V+
Sbjct: 68 MLSSRQ--LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVN 120
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ ME + L D + + LS QR+R +A+ L + ++ +DEPT+ LD
Sbjct: 121 QAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEA---FDELLLLKRGGRVIYAG 1090
+MR +R G+TVV +H D+ +A D L++L G V+ G
Sbjct: 176 ELMRLMRELNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 37/230 (16%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP- 932
D +L ++S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDL 66
Query: 933 --KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME--- 987
+ R G Q E++L++ +R ++ M ++ V+E
Sbjct: 67 ALADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAK 113
Query: 988 -------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ EL D++VG G GLS QR+R+ IA L+ NP I+ DE TS LD
Sbjct: 114 LAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ +MR + + GRTV+ H+ S + A D +++++ GR++ G
Sbjct: 173 SEHAIMRNMHDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 58/263 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ L DVS V+P + L+GP GAGKTTL ++G L SG + + G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
I Q E+TV E + + + T LL +RRE++
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQA---RTGSGLLLARARREERE------- 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 ------ARERAEE--------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYD 409
+L +DE + GL+ T ++ + ++++ H +DV M
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVM------------S 208
Query: 410 LFDDIILLSEGQIVYQGPRDNVL 432
L D + +L +G+++ +G D V
Sbjct: 209 LADRVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 933
G L +S G L G +G+GKTTL+ ++AG G I+ D P
Sbjct: 13 GGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A Y + P +TV E+L + W + + +E V L
Sbjct: 71 ----VAEACHYLGHRNAMKPALTVAENLEF--WAAFLGGEEL-----DIAAALEAVGLAP 119
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 120 LAH----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 1054 DTGRTVVCTIHQPSIDIFEA 1073
G V+ H P + + A
Sbjct: 175 AQGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
+ G ++ L VS + G L+G SG+GK+TL + G + T G +G
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68
Query: 927 KISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ + ++ + Q+ + S P +T+ E + + +++ V
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLL 127
Query: 985 VMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
++ V L LN P LS QR+R+ IA L NP ++ DEPTS LD
Sbjct: 128 LLVGVGLPEEVLNR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 1043 AIVMRTVRN 1051
A ++ ++
Sbjct: 182 AQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L VS + G L+G SG GKTTL+ ++AG T G I I+ P ++
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
V QN P++TV+E++ + L+ + K+R V E ++LV+L+ +
Sbjct: 76 TVF----QNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKP 128
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 -----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 6e-13
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 86/248 (34%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L D+S ++ + +LGP GAGK+TL+ LAG L SG+I G +
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKD------- 62
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
LA LS +E
Sbjct: 63 -------------------------------------LASLSPKE-------------LA 72
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+ +A Q L++LGL AD + +SGG+++RV L +L
Sbjct: 73 RKIAYVPQ--------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPIL 119
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDIILLS 418
+DE ++ LD + ++ + L+++ T+++ L +DL D +ILL
Sbjct: 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLK 172
Query: 419 EGQIVYQG 426
+G+IV QG
Sbjct: 173 DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 9e-13
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 51/258 (19%)
Query: 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI 231
L V+ LK VS ++ ++GP G+GK+TL L + G L D SG++
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGL--DRPTSGEV 61
Query: 232 TYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREK 290
G +++ +++ +E F R +G V + LL +L+ E
Sbjct: 62 RVDGTDIS-------------------KLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
++ + V +E + +L+ +GL + E+ SGGQ++R
Sbjct: 103 ---------VELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 351 VTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
V L ++ DE TG LDS T ++ + L+++ T++V T+D
Sbjct: 149 VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVV-------THD 200
Query: 410 -----LFDDIILLSEGQI 422
D II L +G+I
Sbjct: 201 PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
++++ VS + G + L+G +GAGKTT ++ G + G I I+ P ++
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR- 72
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
AR+ GY Q +TV E++L A L + K+R+ ++E++E + L
Sbjct: 73 -ARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEELLEEFHITHLRK 128
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1057 RTVVCTIH 1064
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 9e-13
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK---NQETF 938
LLH +S F G +T L+G +G+GK+TL+ +L GR EG+I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
AR Y Q + +TV E + + A R + D +K V+E + LV LK
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGLK 138
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1051
L + V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ + G TV+ +H I++ + + L+ RGG +I G
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 57/207 (27%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ---E 936
+L +VS PG A++G SG+GK+TL ++ G R T G +++ G +Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRG 1083
T + H+P + D +L+L+ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ S K+ IL D+S + + L G GAGKTTL LAG L K +SG I
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIK--ESSGSILLN 60
Query: 235 GHELNEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G + +++ Y+ Q D +VRE L L EL +QA
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------LKELDAGNEQA- 107
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ VLK L L + +SGGQK+R+
Sbjct: 108 -------------------------ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-F- 411
L+ ++L DE ++GLD ++ + +++ + +IV T+D F
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKAVIVI-------THDYEFL 189
Query: 412 ----DDIILLSEGQIV 423
D ++LL+ G IV
Sbjct: 190 AKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
+L +S PG A++G +GAGKTTL+ +L G GD+ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 938 FARVSGYC--EQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ G E ++ TV + +L + A + + + T + ++EL+ K
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--N 1051
L D G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 164 LADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ H +I F LLLK G V+ G
Sbjct: 219 ASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 2e-12
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 14/219 (6%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KNQETFARVSGYCEQN 948
RPG L+GV+GAGKTT +L G T GD ++G N + GYC Q
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
D +T E L A LR V ++ + + ++ + L D + G S
Sbjct: 2021 DAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YS 2072
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
+++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H S+
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH--SM 2130
Query: 1069 DIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSI 1107
+ EA L + G G + H K + + V++
Sbjct: 2131 EECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTM 2169
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
++++ VS G + L+G +GAGKTT ++ G R G I D I+ P ++
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR- 76
Query: 938 FARVS-GYCEQNDIHSPY--VTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKS 993
AR+ GY Q S + +TV ++++ A L + D+ +RK +D ++E +
Sbjct: 77 -ARLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L DS S LS +R+R+ IA L ANP I +DEP +G+D A + R +++
Sbjct: 132 LRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186
Query: 1054 DTGRTVVCTIH 1064
D G V+ T H
Sbjct: 187 DRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQETFARVSGYCEQNDIHSP 953
++G +G+GK+ L++ +AG + G I + K I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
++TVY+++ Y R + +++ V E+ E++ + L + LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERK---VLEIAEMLGIDHLLNRKPET-----LSGGEQQ 136
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1073
R+ IA LV NP I+ +DEP S LD R + ++ V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 1074 FDELLLLKRGGRVIYAG 1090
D++ ++ G++I G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 23/204 (11%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYP-K 933
E + ++L V+ + G + A+MG +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 934 NQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
R Q + P VT + L + R + + + E EL+
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 991 LK------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L +N+ G S ++KR I L+ P + +DEP SGLD A I
Sbjct: 132 LDEEFLERYVNE---------GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSI 1068
V + + GR V+ H +
Sbjct: 183 VAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KNQETF-ARVSGYCEQ 947
G + +G +GAGKTT + +L+G + T G+++++G P K ++ F R+ Q
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102
Query: 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007
+ V +S L D+ + K +DE+ EL++L+ L D+ V L
Sbjct: 103 KTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLEELLDT-----PVRQL 154
Query: 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQP 1066
S QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+ T H
Sbjct: 155 SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAG 1090
DI EA +L+ GR++Y G
Sbjct: 215 K-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
L +S G + G +G GKTTL+ +LAG R G + + + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+ R Y P ++ E+L + W + +++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAIHGGAQRT-----IEDALAAVGLTGFE 121
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D LP + LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 D----LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1056 GRTVVCTIHQP 1066
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISG-----YPKNQ 935
LL +V+ G + LMG SG GK+TL+ + G G + G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G Q+ + P+++V ++LL++ L + + R+ + +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 3e-12
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 179 SKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
SK+ L D+S V+ + LLGP GAGKTTL+ + G L D SG+I G +
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 238 LNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSG 270
+ + + R Y+ + + +TVRE L SG
Sbjct: 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 53/247 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-- 244
L +VS ++ ++G G+GK+TL+ LAG SG + G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 245 -RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID- 301
R Y+ Q L +G T+R+ + LG P D
Sbjct: 77 RRNIGYVPQDVTLFYG--TLRDNI-----TLG----------------------APLADD 107
Query: 302 -AFMKAVAVAGQETSLVTDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++A +AG VTD+V K GLD +G E RG+SGGQ++ V L+
Sbjct: 108 ERILRAAELAG-----VTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L +DE ++ +D ++ ++ + L+Q+ + D T+I+ +P+ DL D II++
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDRIIVMDS 213
Query: 420 GQIVYQG 426
G+IV G
Sbjct: 214 GRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 31/238 (13%)
Query: 854 SLTFDNMS-YFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+L + ++ F D A + ++S PG + L+G +GAGKTT +
Sbjct: 2 ALEIEGVTKSFGDKKA--------------VDNISFEVPPGEIFGLLGPNGAGKTTTFRM 47
Query: 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYC-EQNDIHSPYVTVYESLLYSAWLRLSS 971
+ G EG+I +G P +QE R+ GY E+ ++ P +TV + L Y A L+
Sbjct: 48 ILGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELK--- 100
Query: 972 DVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
+ + + + +E +E+ + LS ++++ ++ P ++ +
Sbjct: 101 GMPKAEIQKKLQAWLERLEIVGKKTKK------IKELSKGNQQKIQFISAVIHEPELLIL 154
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088
DEP SGLD ++ + + G T++ + H+ + E D LL+LK+G V+Y
Sbjct: 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 21/213 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF-- 938
L VS RPG + AL+G +GAGK+TLM +L+G G+I I G P +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKPVAFSSPRD 79
Query: 939 ARVSG----YCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A +G + E + + P ++V E++ L R +D K + E++ + L
Sbjct: 80 ALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI 137
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
D++VG LS QR+ + IA L + ++ +DEPT+ L + + +R
Sbjct: 138 DPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
G ++ H+ ++FE D + +L+ G V
Sbjct: 193 AQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 41/235 (17%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 929
+ +L VS G A++G SG+GK+T++ DV +G I+G I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIR 66
Query: 930 GYPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVD---TKKRKM 980
++ R G Q ND T+ ++ Y R +D + K
Sbjct: 67 EV--TLDSLRRAIGVVPQDTVLFND------TIGYNIRYG---RPDATDEEVIEAAKAAQ 115
Query: 981 FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
D++M + D++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 116 IHDKIMRFPDGY---DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095
+ +R V GRT + H+ S I A D++++LK GR++ G HE
Sbjct: 172 TEREIQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERG--THE 220
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 25/234 (10%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGY 931
V + +L VS G +T ++G +G GKTTL+ L G K+G I+
Sbjct: 8 VYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R Y Q P +TV E+LL + RK+ DE+ EL
Sbjct: 68 P----PHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL-----PRRSRKI-PDEIYEL 117
Query: 989 VE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS Q+++L IA LV P ++ +DEPT G+ + R
Sbjct: 118 FPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDI-FEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100
+R G + + Q +D E D +++R GRV+ +G +
Sbjct: 173 VIRRLRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKV 224
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 892 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQ-ETFARVSGYC 945
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q P+++V +L Y +R++ + V+EL+ + L + G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++ H
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 1065 QPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
S+ + +++ GRV AGP+
Sbjct: 191 --SLQEVLRLADRVVVLEDGRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 36/242 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG-YIEGDIKISGYPKNQETF 938
L VS G +T+++G +GAGK+TL M L + +G I+G ++++ P ++E
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTP-SKELA 74
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
++S ++N I+S +TV L+ YS RL TK+ + ++E +E + L+
Sbjct: 75 KKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RL-----TKEDRRIINEAIEYLHLE 126
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L+D + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 127 DLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181
Query: 1053 VDT-GRTVVCTIHQPSIDIFEA---FDELLLLKRGGRVIYAGPLGH--ESHKLIEYFEVS 1106
D G+T+V +H DI A D ++ LK G+V+ G + L E +++
Sbjct: 182 ADELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIYDMD 236
Query: 1107 IP 1108
IP
Sbjct: 237 IP 238
|
Length = 252 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 64/261 (24%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ R L DVS V+P R LLGP GAGK+TL L G+I+ GH+L
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-A 68
Query: 243 PQRTCAYI------SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
P+ A + DL +++VR+ L + + L LSR E +A I
Sbjct: 69 PRAALARLGVVFQQPTLDL---DLSVRQNLRY----------HAALHGLSRAEARARIAE 115
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
L LGL AD V R ++GG ++RV
Sbjct: 116 L------------------------LARLGLAERADDKV-----RELNGGHRRRVEIARA 146
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLF 411
L+ +L +DE + GLD ++ I ++ + +L T +V ++
Sbjct: 147 LLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD------- 199
Query: 412 DDIILLSEGQIVYQGPRDNVL 432
D +++L G+++ G +
Sbjct: 200 DRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-12
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KNQETFARVSGYCEQ 947
G + +G +GAGK+T + +L G T G + +++G P + +E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 948 NDIHSPYVTVYESLLYSAW----------LRLSSDVDTKKRKMFVDEVMELVEL-KSLND 996
+ L W L+L ++ + +D + E+++L L
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1055
+ LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 PV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
TV+ T H DI D +LL+ + G++++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETF 938
L+ +S PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 939 ARVSGYCEQNDIHSPY--VTVYESLLYS--------AWLRLSSDVDTKKRKMFVDEVMEL 988
AR G + + + +TV E+L + A L + ++R +DE++
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR---IDELLAT 134
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
+ L D + L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 52/238 (21%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELNEFVP--QRTCA 248
+T + G GAGK+TL+ +AG D G I G +P QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78
Query: 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA 308
+ Q + VRE L F L RE + I D +D
Sbjct: 79 LVFQQYALFPHLNVRENLAFG------------LKRKRNREDR--ISVDELLDLL----- 119
Query: 309 VAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L+ Y ++ SGG+K+RV L +L +DE
Sbjct: 120 ---GLDHLLNRYPAQL-------------------SGGEKQRVALARALAAQPELLLLDE 157
Query: 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ LD + Q+ LKQ+ L++ +I + E L D I+++ +G++ Y G
Sbjct: 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 60/263 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
P+ SV+ L DVS +K L+G G+GK+TL A+ G L K SG I + G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 238 LNEFVPQ------RTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
L + + + + Q + + MT+ E + R G ++ E E
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLL 127
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
G+ E V + +SGGQ++
Sbjct: 128 LLVGVGLPEE-----------------------------------VLNRYPHELSGGQRQ 152
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV L +L DE ++ LD S QI LK++ L +T++ T+D
Sbjct: 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-------THD 205
Query: 410 L------FDDIILLSEGQIVYQG 426
L D + ++ G+IV +G
Sbjct: 206 LGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 8e-12
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 21/216 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIKISGYPKNQE 936
+L +S G L AL+G SG GKTTL+ +AG TG D ++ P ++
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
A + QN P++ V +++ + + D +R V + ++L L D
Sbjct: 80 GLALLF----QNYALFPHLKVEDNVAFGLRAQKMPKADIAER------VADALKLVGLGD 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1055
+ LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 130 AAAHLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 1056 -GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T++C H D D+ ++K GR+ G
Sbjct: 188 PELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 55/283 (19%)
Query: 179 SKKR--SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
KKR + L D+S +K + LLGP GAGK+TL+ +AG D +G+I G
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGR 64
Query: 237 EL----NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
L N V R ++ QH MTV + + F G+ R E +E R +
Sbjct: 65 VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-----GLKVRKERPSEAEIRAR-- 117
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
V L + + D +SGGQ++RV
Sbjct: 118 ----------------VEEL--------------LRLVQLEGLADRYPAQLSGGQRQRVA 147
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412
L VL +DE LD+ ++ ++L+++ L VT V + E +L D
Sbjct: 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELAD 206
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
+++L++G+I GP D E ++H P + VA FL EV
Sbjct: 207 RVVVLNQGRIEQVGPPD---EVYDH-----PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 9e-12
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
G ++Q L VS G + AL+G +GAGKTTL+ + G R G I I+G
Sbjct: 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R Y + P +TV E+LL A+ R D + ++ ++EV EL
Sbjct: 71 P----PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYEL 122
Query: 989 V-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 123 FPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
++ G + + Q + A D +L+ GR++ +G
Sbjct: 178 AIKELRKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 66/259 (25%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL- 238
K++V+ + VS VKP +T LLGP GAGKTT + LAG L D +G T G ++
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 239 -NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+R ++S + +T RE L++ G L E A +
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG----------LKGDELTARL--- 117
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ + LG++ D VG G S G +++V L
Sbjct: 118 ---------------------EELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQM----------VHILDVTMIVALLQPAPET 407
V VL +DE +TGLD T + +F++Q+ HI+ E
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ------------EV 199
Query: 408 YDLFDDIILLSEGQIVYQG 426
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 49/248 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----EL 238
++ VS V+ + LLGP GAGKTT + L L SG+ T GH E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREP 68
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E +R + Q E+T E L R GV AE R
Sbjct: 69 REV--RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG-----AERRER---------- 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L +GL AD +V + SGG ++R+ LV
Sbjct: 112 -------------------IDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLV 147
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL++DE + GLD T + ++++++ +T I+ E L D + ++
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIID 206
Query: 419 EGQIVYQG 426
G+I+ +G
Sbjct: 207 HGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
R+L VS ++P + +LGP GAGK+TL+ AL+G+L D SG++T G LN + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPP- 70
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE---ID 301
+ H + +L F V ++ R ++G +P+ +
Sbjct: 71 ------EELARHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML---- 357
+ A ++G DY R +SGG+++RV +L
Sbjct: 118 QALAATDLSGLAGR---DY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 358 --VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
V + L++DE ++ LD + + +Q+ + ++A+L D I+
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 416 LLSEGQIVYQGPRDNVL 432
LL +G+++ G +VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 51/252 (20%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFVPQ 244
L +VS + R+ LGP GAGK+T M + G L D SG + CG ++ N Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R Y+ +H+ + +M VRE L F G+ + L +R ++
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-----LLKQRVEE------------- 116
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+++++GL +G +S G ++RV + L+ VL
Sbjct: 117 ----------------MIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVL 155
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQI 422
+DE +TGLD + +I +K + D T+I++ ++Q E + D +I++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 423 VYQGPRDNVLEF 434
V D +
Sbjct: 211 VADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 928
G G+ L++VS G ++G SG+GK+TL +LAG + + G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 929 SGYP----KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
G P K + F R Q+ S P TV L K + +
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGLS----KSQQRI 121
Query: 983 DEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
E+++ V L L+ L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 66/279 (23%), Positives = 106/279 (37%), Gaps = 66/279 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
L ++ V+ + DVS ++ L+G G+GK+TL LAG L SG I +
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 235 GHELN----EFVPQRTCAYIS-QH-----DLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G +L+ E R + Q + MTV + +LAE
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGD----------------ILAE 392
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344
R G E +L+++GL D +S
Sbjct: 393 PLRIHGGGS-----------------GAERRARVAELLELVGLP----PEFLDRYPHELS 431
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404
GGQ++RV L +L +DE + LD S Q+ LK + L +T +
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI----- 486
Query: 405 PETYDLF------DDIILLSEGQIVYQGPRDNVLEFFEH 437
++DL D + ++ +G+IV +GP + V E +H
Sbjct: 487 --SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH 523
|
Length = 539 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 46/192 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ +S + +L GP G+GKTTL+ +AG L A+G I G ++++
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAE 73
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
C Y+ + +TV E L+F LG + +I A ++
Sbjct: 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAAALE 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
AV +A + +S GQK+RV +LV +
Sbjct: 114 AVGLAP-----------------------LAHLPFGYLSAGQKRRVALARLLVSNRPIWI 150
Query: 366 MDEISTGLDSST 377
+DE + LD++
Sbjct: 151 LDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFA 939
L +S + G A++G SG+GK+TL ++ G G +++ G Q ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ GY Q D+ TV E++ R + D +K ++E +L +++ ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEK-------IIEAAKLAGVHELIL 438
Query: 1000 GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LP G + LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G TVV H+PS + D++L+L+ G
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
G+ ++L VS G + A++G SG+GK+TL+ +L G G++ +G ++
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSK 71
Query: 936 ETFARVS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ + G+ Q P T E++ + S + K+R E++E
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEK 128
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1045
V L+ + P S LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 129 VGLE---HRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1046 MRTVRNTVDTGRTVV 1060
M + ++T VV
Sbjct: 184 MLELNRELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 29/219 (13%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQE---TF 938
V+ G L+G SG+GKTT + + IE G+I I G +
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY Q P++TV E++ L D ++ K DE+++LV L ++
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP-SEYA 129
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDT 1055
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 130 DRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--L 185
Query: 1056 GRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
G+T+V H DI EA D + ++ G V Y P
Sbjct: 186 GKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IH 951
G + AL+GV+G+GK+TL L G G I I G P Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 952 SPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
+ + E ++ + WLR + D + V + V++ +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ E D +++K G V+ +GP
Sbjct: 202 LG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-11
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQ---ET 937
L +VS RPG A++G G+GK+TL+ +L G Y EG + + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-- 995
R GY Q D Y T+ +++ A + D +E++ EL +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 996 --------DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
D +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
++ + G+T+V H+ S + + D ++++ GR++ GP
Sbjct: 643 RLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 65/263 (24%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
++ L+ VS V+ + LLG GAGKTTL+ + G + SG+I + G ++ P
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPP 72
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
AY+ + +TV E L LL R + + D E
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENL--------------LLG-AYARRDKEAQERDLE 117
Query: 300 IDAFMKAVAVAGQETSLVTDY--VLKILGLDICADTMVGDEMRRG----ISGGQKKRVTT 353
V + LK E R +SGG+++ +
Sbjct: 118 E----------------VYELFPRLK--------------ERRNQRAGTLSGGEQQMLAI 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL I + + + + L + LL Q A ++
Sbjct: 148 ARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEI 203
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G+IV G +L
Sbjct: 204 ADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 67/240 (27%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQET---FARVSG 943
G L+G SG+GKTT M + IE G+I I G ++ R G
Sbjct: 24 IAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78
Query: 944 YCEQNDIHSPYVTVYE------SLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL--KSLN 995
Y Q P++TV E LL W + +K + DE++ LV L
Sbjct: 79 YVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLDPAEFA 129
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1049
D P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 130 DRY---P--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEFK 179
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP---LGHESHKLIEYF 1103
R + G+T+V H DI EAF D + ++K G V P L ++ + F
Sbjct: 180 RLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 49/274 (17%)
Query: 168 ESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA 227
E + + +L + + LKDV+ + M ++GP GAGK+TL+ +L G +
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--- 57
Query: 228 SGKITYCGHELNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 281
SG+I + G ++ + +R I Q ++V E + GR T L
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSL 116
Query: 282 LAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341
S+ +K + DA E + D + A T+
Sbjct: 117 FGLFSKEDKAQAL------DAL---------ERVGILDKAYQR------ASTL------- 148
Query: 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
SGGQ++RV LV ++ DE LD + ++ LK + +T+IV L
Sbjct: 149 --SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206
Query: 402 QPAPETYDL----FDDIILLSEGQIVYQGPRDNV 431
Q DL D II L G+IV+ GP +
Sbjct: 207 Q-----VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 57/265 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ + DVS V+P + L+GP GAGKTTL + G SG + + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R I+ Q +TV E + +G R L L R + +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENV-----AVGAHARLGLSGLLGRPRARKEER---- 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 125 -----EARERARE--------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQ----------MV-HILDVTMIVALLQPAPETY 408
+L +DE + GL+ T ++ + +++ ++ H + + M
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM------------ 214
Query: 409 DLFDDIILLSEGQIVYQGPRDNVLE 433
L D I++L+ G+++ +G + V
Sbjct: 215 GLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L VS G L G SGAGK+TL+ ++ G R T G I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R G Q+ P TVYE++ + + ++R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR------VSEVLDLVGLKHKA 131
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1059 VVCTIH 1064
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 5e-11
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 46/233 (19%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQ-- 935
LL VS RPG + A++G +GAGK+TL+ L+ G + G+++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 936 -ETFARVSGYCEQNDIHS----PYVTVYE--SLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
AR Q HS P+ TV E ++ + ++ D V +
Sbjct: 71 PAELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQ 121
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 1042
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
V+R R + G V+ +H D+ A D ++LL GR++ G
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLH-QGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 898 LMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETFARVSGYCEQNDIHSP 953
L+G SG GKTT + ++AG T G YI G ++ P A V QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYI-GGRDVTDLPPKDRDIAMVF----QNYALYP 85
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
++TVY+++ + LR + +R V EV EL++++ L D LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDAR 1040
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-11
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +S R G + ALMG +GAGK+TL+ +L+G G I I G FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 943 GYCEQND--IH-----SPYVTVYESLLYSAWL-RLSSDVDTKKRKMFVDEVMELVELKSL 994
I+ P +TV E+L +L +L R++ E E +L+ L
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
GR ++ H+ +IF D + + K G V
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 907 TTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS----GYCEQNDIHSPYVTVYESLL 962
+TL+ ++ G G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022
+ K+ +E +E V L D V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1023 ANPSIIFMDEPTS 1035
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
G + L VS G + ++G SGAGK+TL+ ++ R T G +++G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ- 68
Query: 927 KISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
++ + + R G Q N + S TV+E++ + L L+ V + K V
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIKQRVA 123
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAA 1042
E++ELV L D P + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 124 ELLELVGLSDKADRY---P--AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIYAGPLGH 1094
+I+ + G T+V H+ +++ + D + +L + GR++ G +
Sbjct: 179 SILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEGTVSE 228
|
Length = 339 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 9e-11
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQ 947
G + A++G SGAGK+TL++++AG +T G+I I+G A VS ++
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQE 79
Query: 948 NDIHSPYVTVYES--LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
N++ + ++TV ++ L S L+L++ +K V+ V L LPG
Sbjct: 80 NNLFA-HLTVAQNIGLGLSPGLKLNA-EQREK----VEAAAAQVGLAGFLKR---LPGE- 129
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVVC 1061
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLM 185
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
H P D D ++ L GR+ G
Sbjct: 186 VTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV--TMIV 398
RG+S Q+KR+T G L ++L++DE ++GLDS + I +FLK++ D ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA---DSGQAILC 163
Query: 399 ALLQPAPETYDLFDDIILLSE-GQIVYQG 426
+ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 55/257 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
RIL D+S + ++T L+GP G GK+TL+ A +L SG + ++ +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ--SGTVFLGDKPISMLSSR 72
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R A + QH L +TVRE + + GR L LS +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY-GR----SPWLSLWGRLSAEDNA---------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
V A ++T ++ AD + D +SGGQ++R +L
Sbjct: 118 ----RVNQAMEQT-----------RINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
V+ +DE +T LD + ++ + ++++ + T++ L +DL D ++
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVL-------HDLNQASRYCDHLV 209
Query: 416 LLSEGQIVYQGPRDNVL 432
+L+ G ++ QG + V+
Sbjct: 210 VLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYIEGDIKISG---YPK 933
L+SVS F P +TAL+G SG+GK+TL M+ L T I G I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 934 NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-- 989
+T + G Q P ++YE+++Y LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYG--LRLKGIKD----KQVLDEAVEKSLK 130
Query: 990 ------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E+K L+DS +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 131 GASIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 1043 AIVMRTVRNTVD--TGRTVVCTIHQPS 1067
+ T+ D T V ++ Q S
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 53/186 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 931 YPKNQETFA---RVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
Y + RV G Q P ++Y+++ Y LRL D E
Sbjct: 77 YDPKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYG--LRLHGIKD--------KE 121
Query: 985 VMELVE--LKS----------LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+ E+VE LK L+ S +GL G G Q++RL IA L P ++ MDE
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLHKSALGLSG--G----QQQRLCIARALAVKPEVLLMDE 175
Query: 1033 PTSGLD 1038
PTS LD
Sbjct: 176 PTSALD 181
|
Length = 253 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ---ET 937
L +S + G ++G SG+GK+TL +L G T G + D G Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q D+ T+ E++ R + D +K V+E L +++
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK-------VIEAARLAGVHEL 454
Query: 998 MVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
++ LP G + LS QR+R+ +A L +P ++ +DEP S LD+ A +
Sbjct: 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ G TVV H+PS + D++L+L+ GR+ GP
Sbjct: 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-10
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 69/253 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
++ + LKD++ V + ++GP G+GK++L+ AL G+L K SG ++ G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG-- 66
Query: 238 LNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ AY+SQ + +G T+RE + F G ++ R ++
Sbjct: 67 --------SIAYVSQEPWIQNG--TIRENILF-------GKPFD-----EERYEKV---- 100
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTT 353
I A +L D L+IL D T +G+ +GI SGGQK+R++
Sbjct: 101 ---IKA-----------CALEPD--LEILPDGD---LTEIGE---KGINLSGGQKQRISL 138
Query: 354 GEMLVGTANVLYMDEISTGLDSSTT---FQ--ICKFLKQMVHILDVTMIVALLQPAPETY 408
+ A++ +D+ + +D+ F+ I L + VT + LL A
Sbjct: 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA---- 194
Query: 409 DLFDDIILLSEGQ 421
D I++L G+
Sbjct: 195 ---DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
+L ++ F +T L+G +G GK+TL L+G R G + K Y K
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 939 AR--VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R V+ + + Y + + +S + + +R VDE + LV+ +
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR---VDEALTLVDAQHFRH 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1057 RTVVCTIHQPSID-IFEAFDELLLLKRGGRVIYAGP 1091
V+ + H ID I+E D + +L++G + + P
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
D ++L +++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 936 --ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
R G V + E++L+S +R ++ + V+ +L
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 994 LNDSMVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+D + LP G LS QR+R+ IA LV NP I+ DE TS LD + A
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
++MR +R + GRTV+ H+ + A D +++L++G
Sbjct: 631 LIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 59/276 (21%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGH 236
+ V ++DVS V+P + ++G G+GK+TL LAL G L + SG++ G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 237 ELNEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+L + + A I Q + MT+ + + + R G G+R E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
+Q G+ D + + SGG
Sbjct: 136 LLEQVGLPDPERRDRYPHQL------------------------------------SGGM 159
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
++RV L +L DE +T LD +T QI LK + L + ++ T
Sbjct: 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-------T 212
Query: 408 YDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
+DL D ++++ +G+IV GP + +L +H
Sbjct: 213 HDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 61/263 (23%), Positives = 93/263 (35%), Gaps = 67/263 (25%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+IL VS V + LLG GAGKTTL+ + G L SG I + G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPP 69
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTR-------YELLAELSRREKQA 292
Y+ + E+TV E L R YEL L R KQ
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
A T+ SGG+++ +
Sbjct: 130 --------------------------------------AGTL---------SGGEQQMLA 142
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL +I + ++++ VT+ LL Q A ++
Sbjct: 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTI---LLVEQNARFALEI 198
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G++V +G +L
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 90/276 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
+L DVS ++P + +LGP GAGK+TL+ AL+G +L SG++ G L ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG----ELSPDSGEVRLNGRPLADWSP 71
Query: 244 Q---RTCAYISQHDLHHGEMTVRETLDFS---------GRCLGVGTRYELLAELSRREKQ 291
R A + QH +L F GR A +
Sbjct: 72 AELARRRAVLPQH----------SSLSFPFTVEEVVAMGR-----------APHGLSRAE 110
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
D + A + V +A DY +SGG+++RV
Sbjct: 111 D----DALVAAALAQVDLAHLAGR---DY--------------------PQLSGGEQQRV 143
Query: 352 TTGEMLV------GTANVLYMDEISTGLDSS---TTFQICKFLKQMVHILDVTMIVALLQ 402
+L G L +DE ++ LD + ++ +Q+ H + +IV L
Sbjct: 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL---ARQLAHERGLAVIVVL-- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL D I+LL +G++V G VL
Sbjct: 199 -----HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L ++ G L ++G SG GKTTL++++AG Y G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
G QN+ P+ V +++ + L+L+ V+ +R ++++ V L+ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1058
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1059 VVCTIHQPSIDIFEAF---DELLLLKRG-GRVI 1087
V+ H DI EA EL+LL G GRV+
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSG---YC 945
+PG AL+G SG+GK+T+ ++AG + G +I G P+ + ++
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMV 558
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSD---VDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
+Q DI TV ++L + W D V K D + D+ +
Sbjct: 559 DQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSR---PGGYDAEL-AE 611
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G + LS QR+RL IA LV NPSI+ +DE TS LD I+ +R R C
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCI 666
Query: 1063 I--HQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
I H+ S I + DE+++L+R G+V+ G HE
Sbjct: 667 IVAHRLST-IRDC-DEIIVLER-GKVVQRGT--HEE 697
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIE-GDIKI-SGYPKNQE 936
+LH + +PG + A++G SG+GKTTL+ L + G I GDI I + +Q+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 937 -----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ G+ QN P+ TV E+++ + V + ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 992 KSLNDSMVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1047 RTVRNTVDTGRTVVCTIHQPS 1067
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG----------KLGKDLRASGKITY 233
+ LK+++ + P ++GP GAGK+TL+ + G D+
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR---- 70
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G +L + +R I QH +TV E + GR T LL S +K+
Sbjct: 71 -GKKLRKL--RRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKE-- 124
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+A+ L+ +GL A D++ SGGQ++RV
Sbjct: 125 -----------RAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAI 156
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL--- 410
L +++ DE LD T+ Q+ +LK++ +T+I+ L Q DL
Sbjct: 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKK 211
Query: 411 -FDDIILLSEGQIVYQGP 427
D I+ L G+IV+ G
Sbjct: 212 YADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
D +L VS PG A++G SG+GK+TL+ +L G +T G + G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAG 519
Query: 933 KNQETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ + R G QN + S +++E++ A L L DE E +
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARM 564
Query: 992 KSLNDSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L + + +P G LS QR+RL IA LV P I+ DE TS LD R
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 1043 AIVM 1046
AIV
Sbjct: 625 AIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
D L ++ + G +TA++G +GAGK+TL L G + + G I D K Y +
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76
Query: 936 ETFARVS-GYCEQNDIHSPY-VTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELK 992
R S G Q+ + + +VY+ + + A L+L D + +KR VD ++ ++
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-EVRKR---VDNALKRTGIE 132
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 133 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187
Query: 1053 V-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G T++ H IDI + + + + + GRVI G
Sbjct: 188 QKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
I+ V P +T LLGP G+GK+TL+ LAG L D +G + G H L+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLS 69
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q +TVR+ + L + R AG D
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAG---DSP 112
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
DA + A+A E S + D + L SGG+++RV L
Sbjct: 113 HDAAVVDRALARTELSHLADRDMSTL------------------SGGERQRVHVARALAQ 154
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
+L +DE + LD + ++++ VT++ AL +DL D
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAAL-------HDLNLAASYCDH 206
Query: 414 IILLSEGQIVYQGPRDNVL 432
+++L G++V GP VL
Sbjct: 207 VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYP--KNQET 937
L VS + G + +G +GAGK+T M ++ G Y+ G +++ G +N +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY + H+P +Y + +L+ + + K ++ V E++EL
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL------ 120
Query: 998 MVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
VGL + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 121 -VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 26/169 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L+ +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P++Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD-----------TKKRKMFVDEVMEL 988
R +G + P TV+E+L L L+ D + + K ++EV+E
Sbjct: 76 R-AGIGRK--FQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLET 130
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
+ L D + GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 131 IGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKNQETFARVSGYCEQ- 947
G L L+G +GAGKTTL+ R G I +G +K++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 948 NDIHSPY-VTVYESLLYS-----AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
++ + ++V +++ WLR D V + + V L L D VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1062 TIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
T H D+ +A D ++LL GRVI G
Sbjct: 169 TTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 899 MGVSGAGKTTLMDVLAGR--KTGGYIE-GDIKISGYPKNQ--ETFARV-----SGYCEQN 948
+G +GAGK+TL++ +AG T G I + ++ + ARV +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 949 DIHSPYVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLP 1002
P +T+ E+L A R LSS ++ ++R F + + L L++ +GL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 12/214 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
D +L +S G AL+G SG+GK+TL++++ + G I I G+
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRD 68
Query: 936 ETFA---RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
T A R G Q D+ TV E++ Y +V+ R E + EL
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELP 125
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D+++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 126 EGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
+ RT H+ S I A D +++L+ G V
Sbjct: 185 MK-NRTTFVIAHRLST-IENA-DRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKN 934
L +S + G L+G SG GKTTL+ ++AG R+T G I +G I+ P
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKS 993
+ + G Q+ P +TV +++ Y K R M EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELLD 120
Query: 994 LNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
L VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 L----VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 22/202 (10%)
Query: 869 EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 926
E D L +S G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 927 KISGYPKNQE--TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
++G P + + + AR Y ++V E+L + W SD V+E
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ V L D V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 1045 VMRTVRNTVDTGRTVVCTIHQP 1066
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY-----------PKNQETFAR 940
G+ TAL G SG+GKT+L++++AG EG I+++G P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK----R 76
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
GY Q+ P+ TV +L Y W + + D +LV L + +
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDR 124
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTV 1059
PG LS +++R+ I L+ P ++ MDEP + LD R I+ R + +
Sbjct: 125 YPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182
Query: 1060 VCTIHQPSID-IFEAFDELLLLKRGGRVIYAGPLG 1093
+ H S+D + D +++L+ G+V +GPL
Sbjct: 183 LYVSH--SLDEVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL V V + +LG G+GK+TL+ + G L D G+I G ++ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + Q +TV E + F L E ++ P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
I MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGLR----GAAADLYPSELSGGMRKRVALARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
+ +L++DE ++GLD + I + ++++ L +T+I+ + D + +
Sbjct: 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAV 218
Query: 417 LSEGQIVYQGPRDNVLE 433
L++G+++ +G + +L
Sbjct: 219 LADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 71/256 (27%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHEL---- 238
++L D++ + P + +L GP G+GKTTL L L G LR+ G + G EL
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTL-LTLIGG----LRSVQEGSLKVLGQELYGAS 73
Query: 239 -NEFVP-QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
E V +R YI Q H+L G +T R+ + + EL LS +E +
Sbjct: 74 EKELVQLRRNIGYIFQAHNL-LGFLTARQNVQMA---------LELQPNLSYQEARE--- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQKKRVT 352
+A A +L+ +GL GD + +SGGQK+RV
Sbjct: 121 ---------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVA 151
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPET 407
LV ++ DE + LDS + + + ++++ IL VT
Sbjct: 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH-------DNRI 204
Query: 408 YDLFDDIILLSEGQIV 423
D+ D I+ + +G+++
Sbjct: 205 LDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 55/250 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ ++S V P + LLGP GAGKTT + G L G+IT+ G L++ + R
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI 74
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
Y+ + + +MTV + L + LAEL K K ++ A+++
Sbjct: 75 -GYLPEERGLYPKMTVEDQLKY-------------LAELKGMPKAEIQK---KLQAWLER 117
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + G++T + + +S G ++++ ++ +L +
Sbjct: 118 LEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELLIL 154
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILD---VTMIVA--LLQPAPETYDLFDDIILLSEGQ 421
DE +GLD + LK + L T+I + ++ E L D +++L +GQ
Sbjct: 155 DEPFSGLDPVNV----ELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLKKGQ 207
Query: 422 IVYQGPRDNV 431
V G +++
Sbjct: 208 TVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 17/224 (7%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 932
R +L +VS G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 933 KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
K + F R Q+ + P +TV + + LR + +D ++K + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L+S + LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
T I + + ++F + + + G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQ 237
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQETFARVSGYCEQNDIHSPYVT 956
L+G SG GKTTL+ +LAG + G I + G N R Q+ P++T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
V E++ + +R V + K V E + LV+L+ D LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVA 110
Query: 1017 IAVELVANPSIIFMDEPTSGLDAR 1040
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 884 HSVSGV---FRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 932
+V V + G + AL+G SG GKTT + D+ G + G I D + I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ R G Q P ++V+++++ A L+L+ + R ++ +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAG---IRDRDHLMEVAERSLRGA 132
Query: 993 SLNDSM---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+L D + + P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 133 ALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKNQETFA 939
LL +S G L L G +GAGKTTL+ ++AG +G+I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ + +PY+T+ E+ LY D+ + + E+ L L+ L D
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 1060 VCTIHQ 1065
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954
L+G +GAGK+TL+ ++ G R T G+I G+P ++ ++ E ++
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIGSLIESPPLYE-N 84
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
+T E+L L D +DEV+ +V+L + G S ++R
Sbjct: 85 LTARENLKVHTTLLGLPDSR-------IDEVLNIVDLTN-----TGKKKAKQFSLGMKQR 132
Query: 1015 LTIAVELVANPSIIFMDEPTSGLD 1038
L IA+ L+ +P ++ +DEPT+GLD
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
+L +S PG AL+G SG GK+T++ D +G ++G I
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL---LDGV-DIRDL-- 70
Query: 934 NQETFARVSGYCEQNDIHSP---YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
N G Q P T+ E++ Y +V+ +K + + ++
Sbjct: 71 NLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF--IMS 124
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L D++VG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 125 LPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL- 182
Query: 1051 NTVDTGRTVVCTIH 1064
+ GRT + H
Sbjct: 183 DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 26/217 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFA 939
L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSM 998
R Y Q +P W L+ K R +++V + L L S
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 999 VGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G +V + H + + A LLKR G+++ +G
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 18/218 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET 937
D + L +S G TAL+G +GAGK+TL+ L G G +K+ G N E
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAEN 73
Query: 938 F----ARVSGYCEQNDIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELK 992
++V + D TV++ + + + L D + ++R V+E ++ V +
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-EVERR---VEEALKAVRMW 129
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 130 DFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G+TV+ H +D+ + + +++ + GRV+ G
Sbjct: 185 HNQGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 41/194 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L+ VS V P L+GP GAGK+TL+ L G + G I G L +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSW 394
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ A++ QH T+ E + AE+ ++AG
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAG---------L 437
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ VA Q GL DT +G+ G+SGGQ +R+ + A +
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 364 LYMDEISTGLDSST 377
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 59/195 (30%), Positives = 80/195 (41%), Gaps = 52/195 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V+ LLGP GAGKTT + L LG +G I+ CG E VP R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGLTHPDAGSISLCG----EPVPSR 74
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D + TVRE L GR G LS +A + P
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG----------LSAAAARALVPP--- 121
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD VG+ +SGG K+R+T LV
Sbjct: 122 ---------------------LLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVN 155
Query: 360 TANVLYMDEISTGLD 374
+VL +DE +TGLD
Sbjct: 156 DPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 65/298 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
+V L DVS + + ++G GAGK+TL L L L + SG + G +L
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTL-LRLINLLERP--TSGSVFVDGQDLT 71
Query: 240 EFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
++ I QH TV E + F LA + + E +
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE----------LAGVPKAEIKQR 121
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKR 350
+ +L+++GL D+ R +SGGQK+R
Sbjct: 122 VAE------------------------LLELVGLS--------DKADRYPAQLSGGQKQR 149
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-TYD 409
V L +L DE ++ LD TT I + LK + L +T++ L+ E
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV--LITHEMEVVKR 207
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFR 467
+ D + +L +G++V +G V E F + P+ +F+ E E+ R
Sbjct: 208 ICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEELLER 257
|
Length = 339 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 57/228 (25%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSG 943
VS + G + AL+G +GAGK+TLM +L G + G+I++ G
Sbjct: 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKEVR--------- 69
Query: 944 YCEQNDIHSPY-------------------VTVYESLLYSAWLRLSSDVDTKK-RKMFVD 983
I SP +TV E+++ +D ++ R +
Sbjct: 70 ------IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 984 EVMEL----VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
E+ E V+ + V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 123 ELSERYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
+ A + +R G+T++ H+ ++ D + +L R G+V+
Sbjct: 174 QEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVL-RRGKVV 219
|
Length = 501 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
+L V R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 938 FARVSGYCEQNDIHSPYV--TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
RV+ + + + V E R + +T + V+ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQFA 133
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 134 DR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1056 GRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIYAGP 1091
G+T V IH +D+ + DEL+LL GRV AGP
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLA-DGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 67/272 (24%)
Query: 166 MLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
M+E + + V LKDV+ ++ ++GP G+GK+TL L L G L
Sbjct: 1 MIE-LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGL---D 55
Query: 226 RA-SGKITYCGHELNEFVPQ-------RTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVG 276
+ SG++ G +L + + + ++ Q +L ++TV E +
Sbjct: 56 KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENV---------- 104
Query: 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336
EL + AG A + + V G E L+ +
Sbjct: 105 ---ELPLLI------AGKSAGRRKRAAEELLEVLGLEDRLLKKKPSE------------- 142
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVT 395
+SGGQ++RV L+ ++ DE TG LDS T ++ + L+++ T
Sbjct: 143 ------LSGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGKT 195
Query: 396 MIVALLQPAPETYDL-----FDDIILLSEGQI 422
+I+ T+D D +I L +G+I
Sbjct: 196 IIMV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L +VS +K + L+GP G+GK+TL+ A+AG L SG+I G ++ +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLP 67
Query: 243 PQ---RTCAYISQ 252
+ R Y+ Q
Sbjct: 68 LEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-09
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 19/230 (8%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK---- 927
R+ + VS PG + ++G SG+GK+TL L G + G G++
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 928 -ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
+ G + + R Q+ + S P +T+ + + + L +++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR--A 133
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E++E V L + P LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 134 VELLEQVGL-PDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
A ++ +++ + G V+ H + + E D ++++ + G ++ GP
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGP 238
|
Length = 539 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 72/268 (26%), Positives = 106/268 (39%), Gaps = 66/268 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ D+S + LLGP GAGK+T+ L G + D GKIT L E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G +S RE +A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD V +SGG K+R+T L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDII 415
+L +DE +TGLD I + L+ ++ IL T + E L D +
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME------EAERLCDRLC 206
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
+L G+ + +G +++ E +G C
Sbjct: 207 VLESGRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 55/250 (22%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISG---YPKN 934
+ + VS + G + ++G SG+GK+ L + G + + G+I G +
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 935 QETFARVSG----YCEQNDIHS--PYVTV----YESLLYSAWLRLSSDVDTKKRKMFVDE 984
++ ++ G Q+ + S P +T+ E L +K +
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKER 130
Query: 985 VMELVELKSLNDSMVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
+EL+E +VG+P LS R+R+ IA+ L NP ++ DEPT+
Sbjct: 131 AIELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 1037 LDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095
LD A ++ ++ + G ++ H + + E D + V+YAG
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVA-------VMYAG----- 230
Query: 1096 SHKLIEYFEV 1105
+++E V
Sbjct: 231 --RIVEEGPV 238
|
Length = 316 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
+L + + G + ++G SG+GK+TL+ + G I +K++ KN
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN 72
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV----MELVELK 992
+ G Q P++TV E++ + K + M E +EL+E
Sbjct: 73 ELRQKVGMVFQQFNLFPHLTVLENITLAP---------IKVKGMSKAEAEERALELLEK- 122
Query: 993 SLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+
Sbjct: 123 ------VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD 176
Query: 1048 TVRNTVDTGRTVVCTIHQ 1065
+++ + G T+V H+
Sbjct: 177 VMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
++L +S G + ++G SG+GK+TL+ L G G I D + G K+
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV----MELVELKS 993
R G Q P++TV E++ + K +K+ E +EL+E
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAP---------VKVKKLSKAEAREKALELLE--- 122
Query: 994 LNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+
Sbjct: 123 ----KVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 1049 VRNTVDTGRTVVCTIHQ 1065
+++ + G T++ H+
Sbjct: 179 MKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930
K G ++ L VS G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 931 Y------PKNQETFARVSGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
K R G Q N + S TV+E++ L ++ V + + V
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERV 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E++ELV L+ D+ P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1043 AIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
++ +R+ + G T+V H+ + + D + ++++ G V+ G +
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 17/198 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ---ETFARVSGYC 945
G AL+G SGAGKT+L++ L G ++ +G +KI+G + E++ + +
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
QN P+ T+ +++L + +V E + L+ L D+ +G +
Sbjct: 429 GQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ-GL-DTPIG-DQAA 484
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T + HQ
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQ 543
Query: 1066 PSIDIFEAFDELLLLKRG 1083
++ +D++ +++ G
Sbjct: 544 --LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA-- 939
+LH+VS G + A++G SG+GK+TL+ +L G T GD+ +G P ++ + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 940 -----RVSGYCEQNDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ G+ Q P T E+ LL + KK +E++
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLL----------IGKKKPAEINSRALEMLA 131
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 132 AVGLEHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 894 VLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVSGYC 945
+ ALMG SG GK+TL+ + L +EG++++ G Y + + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-----LNDSMVG 1000
Q P++T+Y+++ + ++L+ V +KK +DE +E K+ + D +
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKE---LDERVEWALKKAALWDEVKDRLND 145
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
P S LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 146 YP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIV 202
Query: 1061 CTIHQPS 1067
H P+
Sbjct: 203 LVTHSPA 209
|
Length = 253 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V L D++ + +LLGP G GKTT + +AG SG+I G ++ +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P R A + Q+ + MTV + + F L R P EID
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFG---------------LKLR-----KVPKDEID 108
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ VA ++L ++ + D + +SGGQ++RV G +V
Sbjct: 109 ERVREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
V MDE + LD+ Q+ LK++ L T I T+D + D I
Sbjct: 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV-------THDQVEAMTMADRIA 202
Query: 416 LLSEGQIV 423
++++GQI
Sbjct: 203 VMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 5e-09
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R +LKDVS +KP ++GP G+GK+TL+ L SG+I G +L +
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDL 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSG 270
+ + AY+ Q L G T+RE + SG
Sbjct: 70 DLESLRKNIAYVPQDPFLFSG--TIRENI-LSG 99
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 48/253 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L DVS + + LLGP G+GKTTL+ +AG D SG I + G + + Q
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72
Query: 245 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L V R E E R K
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFG---LRVKPRSERPPEAEIRAK------------- 116
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+LK++ LD AD +SGGQ++RV L V
Sbjct: 117 --------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKV 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI- 422
L +DE LD+ ++ ++L+++ L VT V + E ++ D ++++++G+I
Sbjct: 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTT-VFVTHDQEEALEVADRVVVMNKGRIE 216
Query: 423 -------VYQGPR 428
VY P
Sbjct: 217 QVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQ 947
F G +TA++G SG+GK+TL++++AG +T G + I+G A VS ++
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 948 NDIHSPYVTVYES--LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
N++ ++TV ++ L S L+L++ D + ++ + V L L LPG
Sbjct: 79 NNLF-AHLTVEQNVGLGLSPGLKLTA-EDRQA----IEVALARVGLAGL---EKRLPGE- 128
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVCT 1062
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLMV 185
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
HQP D ++ L GR+ G
Sbjct: 186 THQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVS-GYCEQN- 948
G + AL+G +GAGK+TL G + T G + + Y K R + G QN
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87
Query: 949 --DIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
+ +P TV E + + L LS + + +KR V E LK+ VG+ G
Sbjct: 88 DDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKR------VKE--ALKA-----VGMEGFE 131
Query: 1006 G-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ + + G T++
Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ H +D+ + + + + G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 59/248 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFV 242
R+L D+S VK + LGP GAGKTT M + G + D SG+IT+ G N
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R A I + +T RE L R LG+ ID
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
VL ++GL A V G S G K+R+ L+G +
Sbjct: 110 ------------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPD 146
Query: 363 VLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE + GLD ++ + + Q + +L + +++ +Q + D I +++
Sbjct: 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ------KVADRIGIIN 200
Query: 419 EGQIVYQG 426
+G+++ +G
Sbjct: 201 KGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 6e-09
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 39/222 (17%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQET 937
+L VS PG +TAL+G SG+GK+T++ +L + GG + D K IS Y
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------ 81
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLR--LSSDVDTKKRKMFVDEVMELV----- 989
E +HS V E +L++ L+ ++ + + + V E
Sbjct: 82 --------EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCS----FECVKEAAQKAHA 129
Query: 990 -----ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
EL S D+ VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
V + + + RTV+ H+ + E D++L+L GGR+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-09
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 859 NMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--R 916
+ ++ M K+ G + L SV+ PG + AL+G +GAGK+TLM VL+G
Sbjct: 1 MATPYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSG----YCEQNDIHSPYVTVYESLLYSAWLRLSSD 972
T G I I Y K A G Y E + I +TV E+L R +
Sbjct: 57 PTKGTI--TINNINYNKLDHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTK 109
Query: 973 -------VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
+D ++ ++ ++ V LK D V LS ++ L IA L+ +
Sbjct: 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDA 164
Query: 1026 SIIFMDEPTSGLDARAAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082
+I MDEPTS L + ++M +R G +V H+ + +I D ++K
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKD 220
Query: 1083 GGRV 1086
G V
Sbjct: 221 GSSV 224
|
Length = 510 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 7e-09
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FV 242
+LKD+S ++P ++GP G+GK+TL+ L SG+I G ++ +
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDS 400
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
++ +SQ D T+RE + G E+ K A
Sbjct: 401 LRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF----- 447
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
I L DT+VG E +SGGQ++R+ L+
Sbjct: 448 ---------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPP 485
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DE ++ LD+ T I LK+++ +I L T D II+L G+I
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS----TIKNADRIIVLDNGRI 541
Query: 423 VYQGPRDNVLE 433
V +G + +L
Sbjct: 542 VERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YPKNQETFA--RVSG 943
P +TA +G SG GK+T++ L G +EG++ + G Y + A R G
Sbjct: 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS------ 997
Q P +++ ++++ A L+L+ + K +DE++E KSL +
Sbjct: 89 MVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLRGANLWNEV 138
Query: 998 --MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 139 KDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQN---DI 950
A++G +GAGK+TL G G + I G P +N + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
SP TV + + + + L D +T + V + ++ L+ L D +P LS
Sbjct: 92 FSP--TVEQDIAFGP-INLGLDEETVAHR--VSSALHMLGLEELRDR---VP--HHLSGG 141
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1069
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +D
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--LD 199
Query: 1070 IFEAFDELLLLKRGGRVIYAG 1090
+ + + + GR++ G
Sbjct: 200 LVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 34/219 (15%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISG 930
R +L+ +S G A++G SGAGK+T++ DV +G T I+G DI+
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV- 330
Query: 931 YPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
Q++ R G Q ND T+ ++ Y R + + ++
Sbjct: 331 ---TQQSLRRAIGIVPQDTVLFND------TIAYNIKYG---RPDATAEEVGAAAEAAQI 378
Query: 986 MELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ ++ L D+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 379 HDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ +R V GRT + H+ S I +A DE+++L G
Sbjct: 438 IQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 35/252 (13%)
Query: 853 LSLTFDNMSYFVD--MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
+++ FDN+SY P E + +H V+ F G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 911 DVLAG--RKTGGYIE-GDIKISGYPKNQE--TFARVSGYCEQNDIHSPYVTVYESLLYSA 965
+ + T G + DI I+ K++ + G Q ES L+
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFED 101
Query: 966 WLRLSSDVDTKKRKMFVDEVME-----LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE 1020
+ K KM +DEV L++L D M P +S Q +++ I
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSI 159
Query: 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLL 1079
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+++
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIV 218
Query: 1080 LKRGGRVIYAGP 1091
+K G V P
Sbjct: 219 MKEGSIVSQTSP 230
|
Length = 286 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQE 936
+ L + + G A++G SG+GK+TL+ +LAG +G I ++G Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQA 409
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+S ++ + S T+ ++L + +SD + + ++ V L+ L +
Sbjct: 410 LRETISVLTQRVHLFSG--TLRDNLRLAN--PDASDEE-------LWAALQQVGLEKLLE 458
Query: 997 SM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
S +G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 459 SAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ G+T++ H+ E D +++L G
Sbjct: 518 FEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 52/253 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK V V+ + ++GP G+GK+TL+ + G L D SG++ G +++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R + Q +TV E + F L E +R +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEE 111
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
EI K AV GL D + +SGG KKRV
Sbjct: 112 EIREIVLEKLEAV----------------GLRGAEDLYPAE-----LSGGMKKRVALARA 150
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L +L DE + GLD + I ++ + L +T I+ + + D I +
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAV 209
Query: 417 LSEGQIVYQGPRD 429
L +G+IV +G +
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 57/195 (29%), Positives = 79/195 (40%), Gaps = 52/195 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V LLGP GAGK+T+ + G D +GKIT L VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G+ TR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------E 148
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
I+A + ++ L+ L+ AD V D +SGG K+R+T L+
Sbjct: 149 IEAVIPSL--------------LEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 360 TANVLYMDEISTGLD 374
+L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL ++S +KP + ++G G+GK+TL KL + +VP+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF---------------YVPEN 56
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+ HDL + + R +GV + +L S R+ A P ++ ++
Sbjct: 57 GRVLVDGHDLALADPA------WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L DT+VG E G+SGGQ++R+ L+ +L
Sbjct: 111 AAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILI 161
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + + V +I L T D II++ +G+IV Q
Sbjct: 162 FDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS----TVKNADRIIVMEKGRIVEQ 217
Query: 426 GPRDNVL 432
G D +L
Sbjct: 218 GSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 66/274 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-R 245
LK+VS V+ ++LGP G+GK+ L+ +AG + D SGKI G ++ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+Y+ Q+ MTV + + + + + +K EI+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLK-------------KRKVDK-------KEIERKVL 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
+A ++LG+D + + +SGG+++RV LV +L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE------ 419
+DE + LD T ++ + LK++ VT++ T+D F++ L++
Sbjct: 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-------THD-FEEAWALADKVAIML 204
Query: 420 -GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G+++ G + V FK P+ + VA+FL
Sbjct: 205 NGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 56/262 (21%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L L K R V LK +S ++ + +GP GAGKTT + L+G L SG++
Sbjct: 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVR 79
Query: 233 YCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
G VP +R ++ + + G+ + L + L V + LLA +
Sbjct: 80 VAG-----LVPWKRRKKFLRRIGVVFGQ---KTQLWWD---LPVIDSFYLLAAIYD---- 124
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ P F K + D + ++L L+ DT V R +S GQ+ R
Sbjct: 125 --LPP----ARFKKRL-----------DELSELLDLEELLDTPV-----RQLSLGQRMRA 162
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ +L++DE + GLD I FLK+ T+++ ++ +
Sbjct: 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYM- 214
Query: 412 DDI-------ILLSEGQIVYQG 426
DI +++ +G+++Y G
Sbjct: 215 KDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 59/255 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL+ VS V +T +LG G GKTTL+ L G L SG I G ++ + P
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHE 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI- 300
AY+ Q +TV E L G LA L RR + K EI
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLL-------TG-----LAALPRRSR----KIPDEIY 115
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM--RRG--ISGGQKKRVTTGEM 356
+ F VLK EM RRG +SGGQ++++
Sbjct: 116 ELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LV +L +DE + G+ S I + ++++ + I+ + Q +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQYLDFARELADRYYV 204
Query: 417 LSEGQIVYQGPRDNV 431
+ G++V G D +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 52/269 (19%), Positives = 104/269 (38%), Gaps = 51/269 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
+L D+S ++ + L+G G GKTTL+ A+AG + +G+I +L P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHK 78
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R A + Q+ + V + + F G+ + A+++ R A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LK++GL + +SGG ++R+ + +VL
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE + LD++ + + + + L I+ + + L D ++ +G++
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219
Query: 425 QG-PRDNVLEFFEHMGFKCPERKGVADFL 452
G P+ ++ P A+FL
Sbjct: 220 HGEPQ----ALYDA-----PADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 55/253 (21%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ + LK+ + + +LG G+GK+TL+ LAG G IT G E+
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
Q T + ++Q +H T+R+ L LA
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLANP------------- 437
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
DA + + A Q+ L + +T +G E R +SGG+++R+ L+
Sbjct: 438 --DASDEELWAALQQVGL-EKL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALL 490
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDD 413
A + +DE + GLD T Q+ L + H T+++ T+ L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDR 541
Query: 414 IILLSEGQIVYQG 426
II+L G+I+ +G
Sbjct: 542 IIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 45/250 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL D+S +K + T ++G G+GK+TL L G SG+I G L +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKD----- 540
Query: 246 TCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I +H L +E FSG L LL G K + D
Sbjct: 541 ----IDRHTLRQFINYLPQEPYIFSGSILE-----NLLL---------GAKENVSQDEIW 582
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +A + D LG T + +E ISGGQK+R+ L+ + VL
Sbjct: 583 AACEIA----EIKDDIENMPLGYQ----TELSEE-GSSISGGQKQRIALARALLTDSKVL 633
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMI-VA-LLQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD+ T +I + ++++ D T+I VA L A ++ D II+L G+I
Sbjct: 634 ILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKI 686
Query: 423 VYQGPRDNVL 432
+ QG D +L
Sbjct: 687 IEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
L+ ++ +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENI 75
Query: 934 NQETFARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
V+ G Q P ++YE++ Y R+ + + K V++ ++
Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKG 132
Query: 989 VEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L L+DS + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 133 AALWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYP 932
+ L +++ +TAL+G SG GK+TL+ D++ G R G + I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 933 KNQETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-- 989
+ R G Q +P+ +++Y+++ Y RL D K+ V+E ++
Sbjct: 75 IDVVELRRRVGMVFQKP--NPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAAL 130
Query: 990 --ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
E+K L+DS +GL G Q++RL IA L P ++ +DEPTS LD A
Sbjct: 131 WDEVKDRLHDSALGLSG------GQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +TV H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ E DE++++ +G + P
Sbjct: 236 ME-HVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 50/230 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQH-DLHH 257
L+GP GAGKT+L+ AL G L + S KI G EL E P+ + +++ Q+ L H
Sbjct: 381 LVGPSGAGKTSLLNALLGFL--PYQGSLKIN--GIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
G T+R+ + LL PD + +A+ A V
Sbjct: 437 G--TLRDNV--------------LLG-----------NPDASDEQLQQALENAW-----V 464
Query: 318 TDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
++++ + GL DT +GD+ G+S GQ +R+ L+ +L +DE + LD+
Sbjct: 465 SEFLPLLPQGL----DTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ + + L M+ L+ + +D I ++ +GQIV QG
Sbjct: 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 48/272 (17%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VP 243
++L D+S + +M LLGP G+GKTTL+ +A G + + SG I + G +++
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHAR 72
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L L RRE+ P A
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAAAI 113
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V T L L++ + D +SGGQK+RV L +
Sbjct: 114 KAKV------TQL----------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE LD+ ++ ++L+Q+ L T V + E ++ D ++++S+G I
Sbjct: 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGNIE 216
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
G D V ++ P + V +F+ EV
Sbjct: 217 QAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA----RVSGYCEQN 948
G + A+MG SGAGK+TL++++AG G IK++ ++ A VS ++N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVND--QSHTGLAPYQRPVSMLFQEN 79
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
++ ++TV +++ L ++ ++++ VD ++ + D + LP LS
Sbjct: 80 NLF-AHLTVRQNI--GLGLHPGLKLNAEQQEKVVDAAQQV----GIADYLDRLPE--QLS 130
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1067
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 1068 IDIFEAFDELLLLKRG 1083
D ++ ++ +G
Sbjct: 191 -DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 46/211 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELN 239
+LK ++ + + LLG GAGK+TL+L L G L G L + Y L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 240 EFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E ++ + Q D V + + F LG+ AE+ RR ++A
Sbjct: 65 ER--RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------ 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ AV +G + +SGG+KKRV +
Sbjct: 112 -----LTAVGASGLR-----------------------ERPTHCLSGGEKKRVAIAGAVA 143
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
+VL +DE + GLD + Q+ L+++
Sbjct: 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 4e-08
Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 873 EGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISG 930
+ ++ L ++ G L A++G G+GK++L+ L G K G + + G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG 66
Query: 931 YPKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
+ A Y Q P++ T+ E++L+ D + ++V++
Sbjct: 67 ------SIA----YVSQ----EPWIQNGTIRENILF------GKPFD----EERYEKVIK 102
Query: 988 ----LVELKSLND---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+L+ L D + +G G++ LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 103 ACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
Query: 1041 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
I + + +T + HQ + + D++++L G
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA--- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQG 426
T+D+ D++ ++ EG+++ QG
Sbjct: 199 ----THDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY 931
GE+++++L +S G + A++G SG+GK+TLM++L G ++ G +++G
Sbjct: 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTYRVAGQ 70
Query: 932 ---PKNQETFARVS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ + A++ G+ Q ++T +++ A + + ++ K+R
Sbjct: 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRL---LR 124
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
EL++ L D + P S LS Q++R++IA L+ +I DEPT LD+ +
Sbjct: 125 AQELLQRLGLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSI 1068
VM + D G TV+ H P +
Sbjct: 183 VMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 42/181 (23%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
Q L ++ +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDI 72
Query: 931 YPKNQETFA---RVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
Y + + RV G Q +P+ +++Y+++ Y R D KK +DE++
Sbjct: 73 YKSDIDVNQLRKRV-GMVFQQP--NPFPMSIYDNVAYGP--RTHGIKDKKK----LDEIV 123
Query: 987 ELV--------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E E+K L S +GL G Q++RL IA L P ++ MDEPTS L
Sbjct: 124 EKSLKGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 1038 D 1038
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
ED+ ++L V+ + G + A+MG +G+GK+TL +AG + G I G +
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 936 --ETFARVSGYCE-QNDIHSPYVTVYESLLYSAWLRLSSDVDTK-KRKMFVDEVMELVEL 991
+ AR + Q P V+ E L + R S+ + F+ + + L
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
+++ + G S ++KR I + P + +DE SGLD A IV +
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189
Query: 1052 TVDTGRTVVCTIHQPSI 1068
+ R+ + H +
Sbjct: 190 LREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
LL +VS PG L+G +GAGK+TL+ +LAG G++ PK RV
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR---PKG----LRV 68
Query: 942 SGYCEQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM- 998
GY Q P TV + ++ + L ++++ + + L EL++L + +
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 999 --------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1041 A 1041
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 37/195 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
ILK V+ VK + ++GP G+GK+TL +AG SG I + G +L E P
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--PSYEVTSGTILFKGQDLLELEP 71
Query: 244 Q---RTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R +++ Q+ ++ E L R L A RR + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFL-----------RSALNA---RRSARG----EEP 113
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+D L+ L +LG+D + + + G SGG+KKR +M +
Sbjct: 114 LDLL--------DFLKLLKA-KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALL 161
Query: 360 TANVLYMDEISTGLD 374
+ +DEI +GLD
Sbjct: 162 EPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET--FARVSGYC 945
+ G TAL+G +G+GK+TL+ L G + T G + GDI +S K +E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 946 EQNDIHSPYVTVYESLLYS--AWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGL 1001
Q P ++E + A+ + + +K + E +E+V L S L
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL 145
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
G Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 146 SG------GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 1062 TIHQPSIDIFEAFDELLLLKRG 1083
H D+ + D + LL++G
Sbjct: 200 VTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 32/252 (12%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 933
L +VS G A++G +G+GK+T+ +L G + G+IKI G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITI 73
Query: 934 NQETFARVS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
++E + G QN D TV + + + + V KK K +D++ + V
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKV 130
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---M 1046
++ D P LS Q++R+ IA L NP II DE TS LD + + M
Sbjct: 131 GMEDYLDKE---P--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRVIYAGPLGH--ESHKLIEY 1102
+R T +T++ H D+ EA D++++ G++I G + +++E
Sbjct: 186 VDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQGKPKEILNNKEILEK 238
Query: 1103 FEVSIPFFPALS 1114
++ PF LS
Sbjct: 239 AKIDSPFIYKLS 250
|
Length = 271 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 42/214 (19%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
++L V+ + G + ALMG +G+GK+TL + G EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 941 VSGYCEQNDIHSPYVTVYESL---LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
DI + E ++ A+ ++ K F L+ +N+
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADF---------LRYVNE- 103
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+V+ H + + D + +L GR++ +G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA- 939
++L V+ +TALMG SG+GK+TL+ V R Y E + Y Q+ F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 940 -------RVSGYCE-QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKR-KMFVDEVMELVE 990
RV + N I P ++++E++ L+L+ V +KK + V +E +
Sbjct: 76 DVIELRRRVQMVFQIPNPI--PNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQ 131
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L + P LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 132 LWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 30/249 (12%)
Query: 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+S+ F+N+ Y M+ +G L ++S G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY---ESLLYSAWLRL 969
G I I+GY ET G + V+ E+ L+ +
Sbjct: 53 FNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQFPEAQLFEN--TV 103
Query: 970 SSDVDTKKRKM-FVDEVMELVELKSLNDSMVGLP------GVSGLSTEQRKRLTIAVELV 1022
DV+ + F ++ + LK L VGL LS Q +R+ IA +
Sbjct: 104 LKDVEFGPKNFGFSEDEAKEKALKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMA 161
Query: 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082
P I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++L+L+
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 1083 GGRVIYAGP 1091
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 77/285 (27%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ D+S +K LLGP G GKTTL+ +AG SG+I G ++ +
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD- 71
Query: 242 VP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
VP +R + Q H MTV E V + L K
Sbjct: 72 VPPEKRPIGMVFQSYALFPH------MTVEEN---------VA--FGL--------KVRK 106
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
EI A ++ L+++GL+ AD +SGGQ++RV
Sbjct: 107 KLKKAEIKARVEE--------------ALELVGLEGFADRKPHQ-----LSGGQQQRVAL 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD---- 409
LV VL +DE + LD+ Q+ K LK++ L +T + T+D
Sbjct: 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEA 200
Query: 410 --LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D I ++++G+I G + + ++ P + VADF+
Sbjct: 201 LAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 44/192 (22%), Positives = 66/192 (34%), Gaps = 47/192 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V 242
+ D+S + + GP GAGKTTL+ LAG L D +G++ + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ Y+ E+T E L F R G G I
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSG-------------------NAATIWE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V +AG E D +S GQ++RV + + A
Sbjct: 114 ALAQVGLAGLE-----------------------DLPVGQLSAGQQRRVALARLWLSPAP 150
Query: 363 VLYMDEISTGLD 374
+ +DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEF 241
+L VS + P +LGP G+GK+TL+ LAG L G++T G L++
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQD 405
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+R + +Q D H + TVRE L R T EL A L R G+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRL-AR--PDATDEELWAALER----VGLADWLR-- 455
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L DT++G E +SGG+++R+ L+ A
Sbjct: 456 ------------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADA 490
Query: 362 NVLYMDEISTGLDSST 377
+L +DE + LD+ T
Sbjct: 491 PILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 24/209 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--Y 921
M E+K G ++L+++S R G A+ G SG GK+TL+ ++A T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 922 IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF 981
EG+ +S K + +VS YC Q TV ++L++ +R R
Sbjct: 62 FEGE-DVSTL-KPEAYRQQVS-YCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAA 113
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
+D L+ +L DS++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1042 A----AIVMRTVRNTVDTGRTVVCTIHQP 1066
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETF 938
L V+ + G +L+G SG GK+TL+++++G + T G +EG P F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
QN P++TV E+ + A R+ D+ +R+ V+E + LV L D
Sbjct: 61 --------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1057
G LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1058 TVVCTIHQPSIDIFEAF---DELLLLKRG 1083
TV+ H D+ EA D +++L G
Sbjct: 167 TVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 38/186 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
Q L +S +TA +G SG GK+TL+ D++ + IEG+I++ G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 931 YPKNQE--TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
Y K + R G Q P ++YE+++Y LRL R++ +DE +E
Sbjct: 95 YDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQG---INNRRV-LDEAVER 147
Query: 989 V--------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
E+K L+++ GL G Q++RL IA + P ++ +DEPTS LD
Sbjct: 148 SLRGAALWDEVKDRLHENAFGLSG------GQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 1040 RAAAIV 1045
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 45/221 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L +VS + G ++G +GAGK+TL +LA + EG I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG---------- 69
Query: 941 VSGYCEQNDIHSPYVTVYESL--------LYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ P + SL L+S +R + D + +E+ + +
Sbjct: 70 ------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRVS 120
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 121 E---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 1053 VDTGRTVVCTIH--QPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T T++ H + ID +D++L++ G Y P
Sbjct: 172 F-TNSTILTIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGY-------PKNQE 936
VS PG + ++G SG+GKTTL+ ++GR G + ++ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 937 TFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV------------D 983
R G+ QN + V S+ + +R M +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQV------------SAGGNIGERLMAIGARHYGNIRAEAQ 132
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +E VE+ D + LP +QR L IA LV P ++FMDEPT GLD A
Sbjct: 133 DWLEEVEIDL--DRIDDLPRTFSGGMQQR--LQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ +R V + G VV H ++ A D L+++K+ G+V+ +G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 930
L +S + A +G SG GK+T + D++ + +EG+I+I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 931 -YPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
Y K + + G Q P +++E++ Y LR++ D + V+E ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 988 LVEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L L +S L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 1043 AIV 1045
A V
Sbjct: 183 AKV 185
|
Length = 250 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 44/228 (19%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---------K 933
L S+S V PG AL+G SG+GK+TL++++ + G I + G+ +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
Q A VS D+ T+ ++ Y + D + ++ + +
Sbjct: 406 RQ--VALVS-----QDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQD 450
Query: 994 LNDSM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
D + +G GV LS QR+RL IA L+ + I+ +DE TS LD +
Sbjct: 451 FVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE---- 505
Query: 1047 RTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
R V+ ++ GRT + H+ S E D ++++ GR++ G
Sbjct: 506 RLVQAALERLMQGRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------YPK 933
Q L ++ G L+G SGAGK++L+ VL + G + I+G P
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPS 73
Query: 934 NQETFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELV 989
++ R G Q P++TV E+L+ A R+ S R ++++ +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRL 129
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
LK D P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +
Sbjct: 130 RLKPYADR---YP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYF 1103
+ +TG T V H+ +++ ++ G ++ G + E F
Sbjct: 185 KELAETGITQVIVTHE--VEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAF 236
|
Length = 242 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYIEGDIKISGYPKN 934
+L V +PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+R+S + + + +L+S +R + D + K + E +E+ +LK++
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 995 NDSMVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
S+ G G+ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHK 1098
+ V T RTVV H+ S I +A D +L+L RG V P + +
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 32/227 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGYPKNQ--ETFARVSG 943
G + +MG+SG+GK+T + +L AG+ +I+G+ I + E + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGE-NIMKQSPVELREVRRKKIG 74
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Q P++T+ ++ L ++RK E+++LV L+ P
Sbjct: 75 MVFQQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHRY---P- 127
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 1062
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 128 -DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186
Query: 1063 IHQPSIDIFEAF---DELLLLKRGGRVIYAGP---LGHESHKLIEYF 1103
H D+ EA D ++++K G V P L + +++ +E F
Sbjct: 187 TH----DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 62/235 (26%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FVPQRTCAYIS 251
LGP GAGKTT + L L SG G+++ VPQ
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
++T RE L+ GR G L + E + +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERAEE--------------- 107
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+L++ L AD VG SGG ++R+ L+ +VL++DE +T
Sbjct: 108 ---------LLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
GLD T I +++ + VT+++ E L D I ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-07
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKN 934
DRL + F +TA +G +GAGKTT + +L G +G + G I N
Sbjct: 947 DRLNI------TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TN 997
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS--DVDTKKRKMFVDEVMELVELK 992
+ + G C Q++I ++TV E +L+ A L+ S + + M D + +
Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE 1057
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTV 1049
D LS +++L++A+ V + ++ +DEPTSG+D R+ ++
Sbjct: 1058 EAQD----------LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107
Query: 1050 RNTVDTGRTVVCTIHQ 1065
R +GRT++ + H
Sbjct: 1108 R----SGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 68/270 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITY 233
PS+ V ILK +S + P + L+G G GK+T++ L R SG+I
Sbjct: 11 PSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILL 62
Query: 234 CGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
G ++ + + +SQ + + T+ E + + G E+ K
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAK 114
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
+A I F I+ L DT+VG+ RG +SGGQK
Sbjct: 115 KA------NIHDF--------------------IMSLPDGYDTLVGE---RGSQLSGGQK 145
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQP 403
+R+ L+ +L +DE ++ LD+ + + + L + + T IV + ++
Sbjct: 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN 203
Query: 404 APETYDLFDDIILLSEGQIVYQGPRDNVLE 433
A D I +L GQ+V QG D ++
Sbjct: 204 A-------DLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
RP + ALMG +GAGK+TL+ L G +K G I G + ++ S +N
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKS----SKEALEN 73
Query: 949 DI---HSPYVTVYE-SLLYSAWL-RLSSDVDTKKRKMFVDEVMELVELKSLNDSM----V 999
I H V + S++ + WL R + MFVD+ + K++ D +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIFDELDIDID 127
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
V+ LS Q + + IA N I+ MDEPTS L + + +R + G +
Sbjct: 128 PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGI 187
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRG 1083
V H+ +IF+ DE+ +L+ G
Sbjct: 188 VYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYIEGDIKISGYPKN--QETFAR 940
V R G + L+G +G GK+T + +LAG+ K + D + + + Q F +
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 941 VSGYCEQNDIHSP-YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ + I P YV + + L D + + DE+++ +EL+ + D
Sbjct: 82 LLEG-DVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKL---DELVDQLELRHVLDR-- 135
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
+ LS + +R+ IA L + F DEP+S LD + R +R + V
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1060 VCTIHQPSI 1068
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 48/308 (15%)
Query: 772 WIGV-----GALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQM 826
W+G G ++ + L F+F A + S T+ E GE QRA+G A +
Sbjct: 261 WVGAHDVIAGKMSAGT-LGQFVFYAVMV-----AGSIGTLSEVWGELQRAAG--AAERLI 312
Query: 827 AVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVG---EDRLQL- 882
+ + + A P P +L V + E++ E V R
Sbjct: 313 ELLQAEPDIKA-----------PAHPKTLP-------VPLRGEIEFEQVNFAYPARPDQP 354
Query: 883 -LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
L ++ RPG AL+G SGAGK+TL +L + G I + G E
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAEL 412
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR++ + + + +V E++ Y +V+ R E + L D+
Sbjct: 413 RARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDT 468
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GR
Sbjct: 469 YLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGR 526
Query: 1058 TVVCTIHQ 1065
T + H+
Sbjct: 527 TTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 40/190 (21%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVS 942
+TAL+G SG GK+T + D++ G K IEG++ G Y N + R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 943 GYCEQNDIHSPYV-TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------- 993
G Q +P++ ++Y+++ Y + + D K+K+ DE++E KS
Sbjct: 91 GMVFQTP--NPFLMSIYDNISYGPKIHGTKD----KKKL--DEIVEQSLKKSALWNEVKD 142
Query: 994 -LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
LN + + L G Q++RL IA L P++I MDEPTS LD + + + N
Sbjct: 143 KLNTNALSLSG------GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 1053 VDTGRTVVCT 1062
++ ++ T
Sbjct: 197 KESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---------YPKNQETFARVSGYCEQ 947
+MG SG+GK+TL+ VL R Y + IK+ G + + + G Q
Sbjct: 40 GIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97
Query: 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSG 1006
P++++Y+++ Y L+ + ++ K V+E + V L K + D + S
Sbjct: 98 QPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS--PASQ 153
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H P
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 60/272 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K + L +VS ++ ++G G+GK+TL LAG SG I G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 238 LNEFVPQRTCA----YISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L + + Q + TV L R G+ + +AEL Q
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL---DQ 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
G+ P S + ++ SGGQ++R+
Sbjct: 128 VGLPP------------------SFLDRRPHEL-------------------SGGQRQRI 150
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPE 406
L+ +L +DE ++ LD S QI L ++ +T + AL+
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----- 205
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHM 438
+ D I ++ GQIV GP + +L H
Sbjct: 206 -EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403
SGG ++RV L +L DE +T LD + QI LK++ +I+
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI---- 210
Query: 404 APETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
T+DL D + ++ G+IV +GP + + +
Sbjct: 211 ---THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
V LKDVS V + ++G GAGK+TL+ + G + SG + G +
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL---ERPTSGSVLVDGTD 68
Query: 238 LNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L +R I QH + LL+ + E
Sbjct: 69 LTLLSGKELRKARRRIGMIFQH-------------------------FNLLSSRTVFENV 103
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGG 346
A + +AG + + + VL++L L VG E + +SGG
Sbjct: 104 A------------LPLEIAGVPKAEIEERVLELLEL-------VGLEDKADAYPAQLSGG 144
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QK+RV L VL DE ++ LD TT I L+ + L +T+++
Sbjct: 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI------- 197
Query: 407 TY------DLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+ + D + ++ +G++V +G V E F +
Sbjct: 198 THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L++VS + P L+G GAGK+TL+ LAG+L D SG++T
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y+SQ E TV + + G G ELLAEL D +
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 305 KAVAVAGQETS-LVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ T + L LG D V +SGG ++RV L+ ++
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDL 174
Query: 364 LYMDEISTGLD 374
L +DE + LD
Sbjct: 175 LLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 27/221 (12%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYC 945
VS PG + ++G SG+GK+TL+ LA G + D + Y +
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLA-----GRLAPDHGTATYIMRSGAELELYQLS 76
Query: 946 EQND---IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV------------DEVMELVE 990
E + + + V+++ +R+S+ + +R M + + +E VE
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
+ + LP S ++RL IA LV P ++FMDEPT GLD A ++ +R
Sbjct: 137 IDP--TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 1051 NTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V D G V+ H + A LL++++ GRV+ +G
Sbjct: 193 GLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 25/155 (16%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI-- 950
G + L+G SG GKTT++ ++AG + EG I I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 951 --HS----PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV 1004
S P++++ E++ Y L++ V ++RK V E +ELV+L D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
+S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 35/224 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
Q + VS + G A++G +GAGKTTL+++L ++ G I I G N T
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT--- 403
Query: 941 VSGYCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVE--------L 991
+ + TV++ L++ +R ++ + +EV E + L
Sbjct: 404 ------RESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFIL 455
Query: 992 KSLN--DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
K N D++VG G + LS +R+RL IA ++ N I+ +DE TS LD A V
Sbjct: 456 KRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RV 510
Query: 1050 RNTVDT---GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+N +D RT H+ S + A +L+L GR+I G
Sbjct: 511 KNAIDALRKNRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 38/202 (18%)
Query: 864 VDMPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-- 917
+ P +M+ G+ G+ Q LH +S F +TAL+G SG GK+T + L
Sbjct: 1 MASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL 58
Query: 918 -TGGYIEGDIKISGYPKNQETFARVS-----GYCEQNDIHSPYVTVYESLLYSAWLR--- 968
G +EG+I + G V G Q P +++E++ Y LR
Sbjct: 59 IPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNG 115
Query: 969 ------LSSDVDTK-KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021
L+ V+ + DEV + L++S +GL G Q++RL IA L
Sbjct: 116 VKDKAYLAERVERSLRHAALWDEVKD-----RLHESALGLSG------GQQQRLCIARAL 164
Query: 1022 VANPSIIFMDEPTSGLDARAAA 1043
P ++ MDEP S LD A
Sbjct: 165 AVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L DVS ++ L GP GAGKTTL+ KL G
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-----KL-----------LYGALT--- 53
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR-YELLAELSRREKQAGIKPDPEI 300
P R I+ D++ + R+ L R +GV + + LL + + E A
Sbjct: 54 -PSRGQVRIAGEDVNR--LRGRQ-LPLLRRRIGVVFQDFRLLPDRTVYENVA-------- 101
Query: 301 DAFMKAVAVAGQETSLVTDYV---LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ V G++ + V L+ +GL+ AD +SGG+++RV +
Sbjct: 102 ----LPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAI 152
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD + +I LK+ ++ T+IVA
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 49/236 (20%)
Query: 202 LLGPPGAGKTTLM---LALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258
LLGP GAGKTTL+ L L ++ +G G +VPQR H+
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 259 -EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
++V T+ SGR +G RR A AV A
Sbjct: 64 FPISVAHTV-MSGRTGHIG--------WLRRPCVAD----------FAAVRDA------- 97
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
L+ +GL AD VG+ +SGGQ++RV L +VL +DE TGLD T
Sbjct: 98 ----LRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ + ++ T I+ + D ++LL+ G+++ G + +
Sbjct: 149 QELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 63/248 (25%), Positives = 95/248 (38%), Gaps = 43/248 (17%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V LK V+ V P + LLG GAGK+TLM L+G G IT N+
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDH 74
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
Q I Q E+TV E L + GR L T+ K G+
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK-----------KVCGV---NI 116
Query: 300 ID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
ID M+ A +L +GL + D V + +S K+ + + L+
Sbjct: 117 IDWREMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
A V+ MDE ++ L + + + Q+ + T IV + E + D ++
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--EGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 419 EGQIVYQG 426
+G V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 27/174 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET 937
R Q+L+ +S G + AL+G SG+GKTTL+ ++AG + G I+ G
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHG-----TD 65
Query: 938 FARVS------GYCEQNDIHSPYVTVYESLLYSAWL-----RLSSDVDTKKRKMFVDEVM 986
+R+ G+ Q+ ++TV++++ + + R ++ K V +++
Sbjct: 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK----VTQLL 121
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
E+V+L L D P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 122 EMVQLAHLADR---YP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 932
+L++VS + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 933 KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
++ F R Q+ I + P TV E + LR +D +R E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 991 LK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L S+ D P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDDSVLDK---RPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1067 SIDIFEAFDELLLLKRGGRVI 1087
++FE D + +L R GRV+
Sbjct: 143 D-EVFEIADRVTVL-RDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 67/262 (25%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
+L+D+S + L+GP G+GK+TL+ + R SG+I GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDGHDVRDY 69
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R +SQ + F+ + E A +P
Sbjct: 70 TLASLRRQIGLVSQ-----------DVFLFND---------------TVAENIAYGRPGA 103
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+ +A + ++ I+ L DT++G+ RG+ SGGQ++R+
Sbjct: 104 TREEVEEAA-----RAANAHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARA 152
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLF 411
L+ +L +DE ++ LD+ + + L++++ + T V + ++ A
Sbjct: 153 LLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA------- 203
Query: 412 DDIILLSEGQIVYQGPRDNVLE 433
D I++L +G+IV +G + +L
Sbjct: 204 DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 44/255 (17%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L +S +++P L+G G+GK+TL+ + D SG+I GH+L ++
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADY 399
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R A +SQ D+ T+ + Y + R E
Sbjct: 400 TLASLRRQVALVSQ-DVVLFNDTIANNI-----------AYGRTEQADRAE--------- 438
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
++ A V L + DT +G+ +SGGQ++R+ L+
Sbjct: 439 -----IERALAAAYAQDFVD-------KLPLGLDTPIGENGVL-LSGGQRQRLAIARALL 485
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
A +L +DE ++ LD+ + + L++++ +I L T + D I+++
Sbjct: 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS----TIEKADRIVVMD 541
Query: 419 EGQIVYQGPRDNVLE 433
+G+IV +G + +L
Sbjct: 542 DGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFARVS-G 943
+TAL+G SG GK+TL+ D++ G K I G + + G Y R+ G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Q P +++YE++ Y LR D K V+ + L +
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 F-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFA 939
L +S R G + L+G +GAGK+TL+ +AG G G I+ +G P + A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R Y Q + V++ L L T+ ++EV E + L V
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSV 124
Query: 1000 GLPGVSGLSTE-QRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRTVRNT 1052
+SG E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 125 N--QLSG--GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G VV + H + + A D + LLK+G
Sbjct: 180 CQQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 6e-07
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGY----PKNQETFARVS- 942
+TA++G SG GKTTL+ D + G + +EG I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
G Q P +++Y+++ + R+ K V+E ++ L S + P
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
G LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 144 GTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 6e-07
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETF 938
L + RPG L G +GAGK+TLM +L+G G +G+I SG P ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM----ELVELKSL 994
Q P ++V E++ L +++ +M + + L+ L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ V P V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 131 DADNVTRP-VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
V C ++ +A + + + R G+ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
L +VS + G + AL+G +G+GK+TL+ +AG + T G I D K +E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR 72
Query: 939 ARVSGYCEQ 947
R+ GY Q
Sbjct: 73 RRI-GYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 64/274 (23%), Positives = 102/274 (37%), Gaps = 84/274 (30%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K++ + ++S V + + LLGP GAGK+TL+ + G L SG+I + GH
Sbjct: 11 GKQTA--VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW- 64
Query: 240 EFVPQRTCAYISQHDLH-----------HGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
++ DLH + +T RE L LG+
Sbjct: 65 -----------TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL------------- 100
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
PD ID VL I+ L S G K
Sbjct: 101 -------PDSRIDE------------------VLNIVDLTNTGKKKAKQ-----FSLGMK 130
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ----ICKFLKQMVHILDVTMIVALLQPA 404
+R+ L+ +L +DE + GLD + I F +Q + ++ + I++
Sbjct: 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS----- 185
Query: 405 PETYDLFDDIILLSEGQIVYQG---PRDNVLEFF 435
E L D I ++SEG + YQG +N+ + F
Sbjct: 186 -EVQQLADHIGIISEGVLGYQGKINKSENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--NQETF 938
+ LH +S F LTAL+G SG GK+T + L + IE +IKI+G K Q +
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIKFEGQNIY 74
Query: 939 A---------RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
+ G Q P+ +VY+++ Y L+++ D + V+E ++
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQA 131
Query: 990 EL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ K D++ S Q++R+ IA L P ++ +DEPTS LD +++ + T
Sbjct: 132 AIWKETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 1049 V 1049
+
Sbjct: 190 L 190
|
Length = 251 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVY 958
G SG GK+TL+ ++AG + GD+ I N R G Q+ P+++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93
Query: 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA 1018
E++ S L+L+ ++ V++V E+++L L D P LS QR+R+ I
Sbjct: 94 ENM--SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDR---KP--KALSGGQRQRVAIG 145
Query: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LVA PS+ +DEP S LDA A + MR
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 34/217 (15%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ +L ++ PG + AL+G SG+GK+T+ +L + TG G + + G P
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG----GQVLLDGVP----- 544
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ Y + + +H V E +L+S +R + +E+M + + +D
Sbjct: 545 ---LVQY-DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHD 598
Query: 997 SMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
++ P G G LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1048 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
++ + RTV+ H+ S E D++L+LK+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQET 937
Q+LH++ G + ++G SG+GK+TL+ + L +G I +K++ ++
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ +G Q P++T E++++ +R +S + +K+ EL+ L +
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ------ARELLAKVGLAE 128
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1057 RTVVCTIHQ 1065
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 32/167 (19%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YPKNQET--FARV 941
F +TAL+G SG GK+T + L G I G++ + G Y N++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------- 993
G Q P+ ++YE+++Y LRL+ K K +DE +E LK
Sbjct: 88 VGMVFQQPNPFPF-SIYENVIYG--LRLAG----VKDKAVLDEAVE-TSLKQAAIWDEVK 139
Query: 994 --LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L++S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 140 DHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 1070
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H D+
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH----DL 212
Query: 1071 FEAFDELL----LLKRGGRVIYAG 1090
A LL L+ + GRV+ +G
Sbjct: 213 --AVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 53/268 (19%), Positives = 100/268 (37%), Gaps = 79/268 (29%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNE-- 240
LKD+S + +T L+GP G GK+TL+ L L G++ G ++ +
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 241 -----------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
V Q+ + ++ + + G+
Sbjct: 74 VDVLELRRRVGMVFQKPNPF---------PGSIYDNVA-----YGL-------------- 105
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR-----GIS 344
+ GIK E+D ++ L+ L DE++ G+S
Sbjct: 106 RLHGIKLKEELDERVEE--------------ALRKAALW--------DEVKDRLHALGLS 143
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---LL 401
GGQ++R+ L VL +DE ++ LD +T +I + + ++ + T+++ +
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQ 201
Query: 402 QPAPETYDLFDDIILLSEGQIVYQGPRD 429
Q A + D L G++V GP +
Sbjct: 202 QAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 9e-07
Identities = 68/299 (22%), Positives = 114/299 (38%), Gaps = 37/299 (12%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-------CGH 236
+LK++S ++ + +LG GAGK+ LM L G + SG+I Y CG+
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-PTSGRIIYHVALCEKCGY 71
Query: 237 -ELNEFV--PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
E V P C G E +DF + R + + A
Sbjct: 72 VERPSKVGEPCPVC----------GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL 121
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-----RGISGGQK 348
D +D ++A+ G E + ++ MV R R +SGG+K
Sbjct: 122 YGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI-------EMVQLSHRITHIARDLSGGEK 174
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408
+RV L + DE + LD T + L++ V ++M++ PE
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVI 232
Query: 409 -DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
DL D I L G+I +G D V+ F G E++ + + + ++ + +
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEKECEVEVGEPIIKVRNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ---- 935
++ S G + +MG+SG+GK+TL+ +L T G I D K I+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 936 --ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ + V Q+ P+ TV E++ + L + V +R+ E +ELV L+
Sbjct: 104 RRKKISMVF----QSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEG 156
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 1048
D LS ++R+ +A L +P I+ MDE S LD ++RT
Sbjct: 157 YADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDE 206
Query: 1049 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
+ +T+V H D+ EA D + ++K G ++ G
Sbjct: 207 LLELQAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L ++ + L+GP GAGK+TL+ + ++L SG I G ++++ R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI---YKEELPTSGTIRVNGQDVSDL-RGRA 72
Query: 247 CAYISQH------D---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
Y+ + D L V E + F+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPD--RNVYENVAFALEVTGVPPR-----EIRKRVPAA----- 120
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L+++GL + +SGG+++RV +
Sbjct: 121 ------------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAI 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD TT++I LK+ ++ T++VA
Sbjct: 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 51/248 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L D+S V+ + LLGP GAGKTT + + G + D SG++ + G L +
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DI 66
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ Y+ + + +M V + L + + L L + E + I
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQ----------LKGLKKEEARRRI------- 109
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
D L+ L L A+ V +E+ S G +++V ++
Sbjct: 110 -----------------DEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDP 147
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHIL---DVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE +GLD + LK ++ L T+I++ Q +L D ++LL+
Sbjct: 148 ELLILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN 202
Query: 419 EGQIVYQG 426
+G+ V G
Sbjct: 203 KGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235
V + + ILK V +VK ++GP G+GK+TL+ LA G D +SG++ G
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLG 71
Query: 236 HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQA-- 292
L+ ++ R +G V + L+ L+ E A
Sbjct: 72 QPLH-------------------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112
Query: 293 -GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQK 348
++ + D+ A A +L+ +GL G + +SGG++
Sbjct: 113 LELRGESSADSRAGAKA------------LLEAVGL--------GKRLTHYPAQLSGGEQ 152
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL 385
+RV G +VL+ DE + LD +T +I L
Sbjct: 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 45/249 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELN 239
+IL D+S V P ++GP GAGKTTL+ L G+ +SG +T G E
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP---SSGDVTLLGRRFGKGETI 101
Query: 240 EFVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++ +S H+ TVR+ + SG Y+ +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVV-LSGF-FASIGIYQEDLTAEDLAAAQWL--- 155
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L++LG AD G +S G+++RV L
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + GLD Q+ L+++ ++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 418 SEGQIVYQG 426
EG++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 49/266 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
ILK V+ VK + ++GP G+GK+TL + G ++ G+I + G ++ E P
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPD 76
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+R A I + + ++ GV L A ++ R GI PE
Sbjct: 77 ERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAMNARRGARGI--LPEFIKE 122
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+K A ++LGLD + + + G SGG+KKR ++L+ +
Sbjct: 123 LKEKA--------------ELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 364 LYMDEISTGLDSSTTFQICKFLKQM----VHILDVT---MIVALLQPAPETYDLFDDIIL 416
+DE +GLD + + + + +L +T ++ ++P D + +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP--------DKVHV 217
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKC 442
L +G+IV G + + E E G+
Sbjct: 218 LYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 48/173 (27%)
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--FVPQRTCAYISQHDLHHGEMT 261
GP G GKTTL+ LAG L D SG++ + G L E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
E L F A + I+ + AV + G E
Sbjct: 90 ALENLHF-------------WAAIHGGA-------QRTIEDALAAVGLTGFEDLPA---- 125
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
+S GQ++R+ + + A + +DE +T LD
Sbjct: 126 -------------------AQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 63/256 (24%), Positives = 92/256 (35%), Gaps = 54/256 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEM 260
LLGP G GKTTL+ LAG D SG I G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F + V P EI + + ++
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEIKPRVLEAL----RLVQLEEF 93
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
D +SGGQ++RV LV +L +DE + LD Q
Sbjct: 94 ---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVLEFFEHMG 439
+ LK + L +T + + E + D I ++ +G+I G P E +E
Sbjct: 139 MQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPE----EIYEE-- 191
Query: 440 FKCPERKGVADFLQEV 455
P VA F+ E+
Sbjct: 192 ---PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 48/228 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
++GP GAGK+TL+ +AG + ASG I P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM--KAVAVAGQETSLVT 318
TVR+ + G+ P +++A K V A Q
Sbjct: 86 TVRQNIGL------------------------GLHPGLKLNAEQQEKVVDAAQQ------ 115
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+G+ D + D + +SGGQ++RV LV +L +DE + LD
Sbjct: 116 ------VGIA---DYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ +KQ+ T+++ + + + I ++S+G+I
Sbjct: 165 EEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE 936
+ LL +S G A++G +GAGK+TL+ +LAG G + G +K+ G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLN 995
GY +Q+ + ++ + E+ L
Sbjct: 387 -----IGYFDQH--------------RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF- 426
Query: 996 DSMVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 427 ----GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 63/268 (23%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-----CGHEL---- 238
+DVS + P + ++G G+GK+TL+ LAG+L D G TY EL
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 239 ---NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
+ + ++ Q+ M V + R + +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
+ A A D++ ++ +I + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------ 409
LV +++MDE + GLD S ++ L+ +V L + +I+ T+D
Sbjct: 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARL 214
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEH 437
L ++++ +G++V G D VL+ +H
Sbjct: 215 LAQRLLVMQQGRVVESGLTDQVLDDPQH 242
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQETFA 939
++ VS R G + +MG+SG+GK+TL+ R IE G + I G +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRK 94
Query: 940 RVS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ Q+ P+ TV E++ + ++ V +R+ E +ELV L+
Sbjct: 95 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLE 151
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 152 GWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCG 235
+R IL+D+S ++P R+T LLG GAGK+TL+ ALAG L + R +G +T G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 236 HELNEFVPQR 245
L R
Sbjct: 71 EPLAAIDAPR 80
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYIEGDIKISGYPKNQE 936
VS F +TA++G SG GK+T++ + + R TG + D I +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLN 995
+ R G Q P +++Y++++ A +L+ V+ + V+ ++ V L +
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D + LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 DRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 52/211 (24%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--K 933
E Q+L ++S + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSD 68
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
++ + + Q PY L+ LR
Sbjct: 69 LEKALSSLISVLNQ----RPY-------LFDTTLR------------------------- 92
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 ---NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-V 144
Query: 1054 DTGRTVV-CTIHQPSIDIFEAFDELLLLKRG 1083
+T++ T H I E D++L L+ G
Sbjct: 145 LKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 66/278 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L VS +K LLGP G GKTTL+ +AG SG+I G ++
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P +R + Q+ +TV E + F R + AE+ R +A
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA--------- 114
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L ++ L+ A+ ++ SGGQ++RV LV
Sbjct: 115 --------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
VL +DE LD + LK++ L +T + T+D + D I
Sbjct: 150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV-------THDQEEALTMSDRIA 202
Query: 416 LLSEGQIVYQG-PRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G P + +E P + VADF+
Sbjct: 203 VMNKGKIQQIGTPEE----IYEE-----PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 53/216 (24%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIE-GDIKISGYPKNQETF 938
L ++S +PG ++G +G+GK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 939 ARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
D+ S + + +L+S +R + D + + + +E V LK +S
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVES 124
Query: 998 MVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
+ G G LS QR+ L +A L+ I+ +DE T+ +D A++ +T+R
Sbjct: 125 LPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR- 183
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
TV+ H+ +D D +L+L + GRV+
Sbjct: 184 EAFKDCTVLTIAHR--LDTIIDSDRILVLDK-GRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 54/234 (23%), Positives = 88/234 (37%), Gaps = 54/234 (23%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +VS R G + +L G +GAGK+TLM VL+G G EG+I G + S
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL------QAS 74
Query: 943 GYCEQND-----IHS-----PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ IH ++V E++ + +D + +++ ++L
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL- 133
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 134 ---DINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD- 188
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVS 1106
L G IY SHKL E +S
Sbjct: 189 --------------------------LKAHGIACIYI------SHKLNEVKAIS 210
|
Length = 506 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 49/208 (23%)
Query: 866 MPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLA 914
+M+ V GE Q L V +TA +G SG GK+T + D +
Sbjct: 16 TEIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID 73
Query: 915 GRKTGGYIEGDIKISG---YPKNQ---ETFARVSGYCEQNDIHSPY-VTVYESLLYSAWL 967
G + + G I + G Y E ARV G Q +P+ ++YE++ Y
Sbjct: 74 GCR----VTGKITLDGEDIYDPRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYGP-- 124
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL----------PGVSGLSTEQRKRLTI 1017
R+ +K E+ E+VE SL + GL PG +GLS Q++RL I
Sbjct: 125 RIHGLARSK------AELDEIVE-TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCI 174
Query: 1018 AVELVANPSIIFMDEPTSGLDARAAAIV 1045
A + +P +I MDEP S LD A A V
Sbjct: 175 ARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 61/248 (24%), Positives = 109/248 (43%), Gaps = 24/248 (9%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGY 931
G +Q L++VS G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 13 QGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72
Query: 932 PKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
++ T AR G Q+ TV+ ++ L ++D + +V EL+
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLA 126
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L L D P S LS Q++R+ IA L +NP ++ DE TS LD ++ ++
Sbjct: 127 LVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184
Query: 1051 NTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV--------IYAGPLGHESHKLIE 1101
G T++ H+ +D+ + + + + G + I++ P + K I
Sbjct: 185 EINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIR 242
Query: 1102 -YFEVSIP 1108
+SIP
Sbjct: 243 STLHLSIP 250
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 17/219 (7%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKNQET 937
L+ ++ + G + AL+G SG+GK+ ++ +L T G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 938 F-ARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R QN + P T+ + + +K+ + + E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL---SKQARALILEALEAVGLPDP 115
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1053
+ + P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
G ++ H + + DE+ ++ GR++ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 866 MPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---T 918
M +M+++ + GE Q L+ ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS 58
Query: 919 GGYIEGDIKISG---YPKNQETF---ARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSS 971
IEG++ + G Y K+ + RV G Q +P+ +++Y+++ Y +
Sbjct: 59 NVKIEGEVLLDGKNIYDKDVDVVELRKRV-GMVFQKP--NPFPMSIYDNVAYGPRIHGIK 115
Query: 972 DVDTKKRKMFVDEVMELVELKS---------LNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022
D K +D+++E K+ L S + L G Q++RL IA +
Sbjct: 116 D------KKELDKIVEWALKKAALWDEVKDDLKKSALKLSG------GQQQRLCIARTIA 163
Query: 1023 ANPSIIFMDEPTSGLD 1038
P +I MDEPTS LD
Sbjct: 164 VKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 36/171 (21%)
Query: 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-----------NQETFARVSG 943
+TA++G SG GK+T + L +EG +K+ G N R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV--------ELK-SL 994
Q P +++YE++ Y +R+S+ K + +DE++E E+K L
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISA----KLPQADLDEIVESALKGAALWQEVKDKL 144
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
N S +GL G Q++RL IA L P ++ MDEP S LD A V
Sbjct: 145 NKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 338 EMRRGI------SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
E+RR I SGGQ++RV L+ ++L +DE ++GLD ++ ++ + L+++
Sbjct: 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AE 128
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
T+I+ P D +I+L +G+
Sbjct: 129 EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 47/201 (23%), Positives = 73/201 (36%), Gaps = 56/201 (27%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ +LKD+S + ++GP GAGK+TL+ LAG+LG SG +
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVK-V 381
Query: 235 GHELNEFVPQRTCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRYELLAELSRREKQAG 293
G + Y Q H E+ +T L+ G E+ A L R G
Sbjct: 382 GETVK-------IGYFDQ---HRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR----FG 427
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ K V V +SGG+K R+
Sbjct: 428 FTGED----QEKPVGV---------------------------------LSGGEKARLLL 450
Query: 354 GEMLVGTANVLYMDEISTGLD 374
++L+ N+L +DE + LD
Sbjct: 451 AKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------IEGDIKI 928
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG + GD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 929 SGYP 932
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950
RPG + ++G +G GK+T + +LAG + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQN-- 151
Query: 951 HSPYVTVYESLLYSAWLR----------LSSDVDTKKRKM--------FVDEVMELVELK 992
Y LY LR + V K ++ DEV+E + L+
Sbjct: 152 -------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE 204
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
++ D VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 205 NVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259
Query: 1053 VDTGRTVVCTIH 1064
+ G+ V+ H
Sbjct: 260 AEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 25/210 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET--- 937
L VS G A++G +G+GK+TL +L G G I + G ++ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 938 FARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R G QN D TV + + + + +R VD+ + V ++ +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER---VDQALRQVGMEDFLN 135
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 136 RE---P--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1057 R-TVVCTIHQPSIDIFEAF--DELLLLKRG 1083
TV+ H D+ EA D ++++ +G
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------------YPKNQETF 938
G AL+G SG+GK+T++ +L + EG I++ G P +++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 939 ARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
++ G Q+ P+ TV +++ + L L R MEL+++ L
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM-----ARAEAEKRAMELLDMVGLA 137
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1054
D +P + LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 138 DKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195
Query: 1055 TGRTVVCTIHQ 1065
T++ H+
Sbjct: 196 HDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 25/211 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKN------ 934
L +++ G AL+G SG+GK+T+ ++L T Y EG+I + G+
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 935 -QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LK 992
+ A VS QN +H T+ ++ Y+ + S + + +M M+ + +
Sbjct: 415 LRNQVALVS----QN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMD 467
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ D+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 468 NGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DE 525
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ RT + H+ S E DE+L+++ G
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 57/253 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEFV 242
LK ++ + M LLGP GAGK+TL L G L G+ L I Y L E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 243 PQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
++T + Q+ D TV E + F LG+ E+ +R K+A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+KAV + G E ++ +SGGQKKRV +L
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 362 NVLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
++ +DE ++GLD QI K L K+ + I+ T V L P Y D + ++
Sbjct: 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYVM 210
Query: 418 SEGQIVYQG-PRD 429
S+G+I+ +G P++
Sbjct: 211 SDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 925
E K ++L +S F G + ++G SGAGK+TL+ ++ + EG
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGS 59
Query: 926 IKISGYP-KNQET--FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRK 979
I I G K + R G Q P++ TV +++ Y L+ +VD
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD----- 110
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
V+ + +V L + V LS + +R++IA L NP ++ +DEPTS LD
Sbjct: 111 --VEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164
Query: 1040 RAAAIVMRTVRN 1051
+ I+ +
Sbjct: 165 TSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
Q L V+ RPG + L G SGAGK+TL+ ++ G R + G I I+ +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
F R G Q+ TVY+++ + +S D ++R V ++ V L D
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKV---GLLD 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1057 RTVVCTIH 1064
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP-KNQETF 938
Q L ++ +TAL+G SG GK+T + I+G ++I G KNQ+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 939 A---RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
A V +Q ++ ++YE++ Y+ L ++ + VD + ++ + +
Sbjct: 76 ALRKNVGMVFQQPNVFVK--SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
D + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 134 DKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
V + + G+SGGQ++RV L +VL +DE ++ LD T ++ LK + L +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 395 TMIVALLQPAPETYDLFDDIILLSEGQ 421
T+++ E L D +++L +G+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FVP--QRTCAYISQ 252
T + G G+GKTTL+ +AG D G+I G L + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
++VR L RY G+K
Sbjct: 83 EARLFPHLSVRGNL-----------RY-------------GMK------------RARPS 106
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E + + V+++LG+ + G +SGG+K+RV G L+ + +L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
LD ++I +L+++ + ++ LQ E L D +++L +G++ GP
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 431 VL 432
V
Sbjct: 219 VW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 26/179 (14%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQ-- 935
Q L +++ + +TAL+G SG GK+T + + + G + EG+I + +P N
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 936 --------ETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
E R+S ++ + P+ +++E++ Y +R K+R + + V
Sbjct: 88 LSPEVDPIEVRMRISMVFQKPN---PFPKSIFENVAYGLRIR-----GVKRRSILEERVE 139
Query: 987 ELVELKSLNDSMVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +L D + G LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 140 NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP-- 932
++R+ L +S G L + G +GAGKT+L+ +LAG R G++ G P
Sbjct: 12 DERI-LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIR 66
Query: 933 KNQETFARVSGYC-EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ ++ + + Y Q I +T E+L + RL D + + E +
Sbjct: 67 RQRDEYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDD-------EALWEALA- 115
Query: 992 KSLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 116 ------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169
Query: 1047 RTVRNTVDTGRTVVCTIHQP 1066
+ + G V+ T HQ
Sbjct: 170 ALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 13/189 (6%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-IEGDIKISGYP----KN 934
+L VS F +T+LMG +G+GKTT + L K GY GD+ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKK-RKMFVDEVMELVELKS 993
F R G Q P +++ +++L A +R V K+ R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
+ D + P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1054 DTGRTVVCT 1062
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS-- 952
LT L+G SG GKTT++ ++AG +T G I + G + V E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 953 ------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
P++TV+E++ + ++ + + R V E + +V+L+
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKP-----HQ 144
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 58/244 (23%), Positives = 92/244 (37%), Gaps = 56/244 (22%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-----NEFVP--QRTCAY 249
+T L GP G+GKT+L+ +AG D G+I G L F+P +R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAV 309
+ Q TVR L + S R + F + VA+
Sbjct: 81 VFQDARLFPHYTVRGNLRYG-------------MWKSMRAQ------------FDQLVAL 115
Query: 310 AGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369
G E L D +SGG+K+RV G L+ +L MDE
Sbjct: 116 LGIEHLL--------------------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429
LD +I +L+++ +++ ++ E L D +++L G++ GP +
Sbjct: 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLE 214
Query: 430 NVLE 433
V
Sbjct: 215 EVWG 218
|
Length = 352 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 70/257 (27%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL DVS ++P ++GP G+GK+TL+ L LG + SG + Y G +L Q
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDVQ 523
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ GR L G+ +E +A A + D +
Sbjct: 524 AVRRQLGVVLQN----------------GR-LMSGSIFENIA------GGAPLTLD---E 557
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTM----VGDEMRRGISGGQKKRVTTGEML 357
A +A +AG DI A M V E +SGGQ++R+ L
Sbjct: 558 A-WEAARMAGLAE-------------DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFD 412
V +L DE ++ LD+ T + + L++ L VT IV + ++ A D
Sbjct: 604 VRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNA-------D 652
Query: 413 DIILLSEGQIVYQGPRD 429
I +L G++V QG D
Sbjct: 653 RIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 64/209 (30%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
VL + GVSG+GK+TL+ G Y G ++ + S
Sbjct: 21 NVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK----------------FS 58
Query: 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGLPGVSGLS 1008
+ F+D++ L+++ +L + S LS
Sbjct: 59 RNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL------STLS 89
Query: 1009 TEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
+ +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G TV+ H
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149
Query: 1067 SIDIFEAFDELLLL-----KRGGRVIYAG 1090
D+ + D ++ K GG+V+++G
Sbjct: 150 --DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L VS G T+++G +G+GK+T+ ++ G + G+I + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 943 ---GYCEQNDIHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVMELVELKSLNDSM 998
G QN + V + Y L + V + V E ++ V++ D
Sbjct: 83 KHIGIVFQNPDNQ---FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE 139
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 1057
P + LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 140 ---P--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 1058 TVVCTIHQPSIDIFEAF--DELLLLKRG 1083
T++ H D+ EA D ++++ +G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKNQETF 938
L VS G L+G +GAGK+TL+ +LAG I G + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 939 ARVSGYCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
RVS +P +T E++ L L LS K+ +DE++E EL D
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLS----RKEIDEKIDEIIEFSELGDFID- 137
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
TV+ H PS I D L+L++ G++ + G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ 935
++Q LH VS G + L+G +GAGKTTL+ L G R T G I D K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
V+ E + S +TV E+L + + + + + V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYEL--FPRLH 128
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQ 182
Query: 1056 GRTVVCTI 1063
R TI
Sbjct: 183 LREQGMTI 190
|
Length = 237 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 32/172 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
+L +S + T ++G+SG+GK+TL +L G G+I ++G+ T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 939 ARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+ Y Q PY+ ++ E+LL A K + DE+ E+ +
Sbjct: 547 RQFINYLPQE----PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIK 591
Query: 996 DSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D + +P S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 62/208 (29%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
LL +S +PG + G SG GK++L LAG + G I G P+ ++
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRI---GMPEGEDLL--- 67
Query: 942 SGYCEQNDIHSPYV---TVYESLLYSAWLR-LSSDVDTKKRKMFVDEVMELVELKSLNDS 997
+ Q PY+ T+ E L+Y W LS
Sbjct: 68 --FLPQ----RPYLPLGTLREQLIY-PWDDVLSGG------------------------- 95
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
EQ+ RL A L+ P +F+DE TS LD + + + ++ + G
Sbjct: 96 ------------EQQ-RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGI 139
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
TV+ H+PS+ F D +L L G
Sbjct: 140 TVISVGHRPSLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 36/164 (21%)
Query: 895 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YIEGDIKISGYPKNQETFARVSGY 944
+TA++G SG GK+T +++++ KT G Y + +I Y +E V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 945 CEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV--------ELKS-L 994
++ + P+ ++Y+++ Y + K K +DE++E ELK L
Sbjct: 111 FQKPN---PFPKSIYDNVTYGP------KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+D+ GL G Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HDNAYGLSG------GQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGY 931
+ ++ +S +TAL+G SG GK+T + D++ ++ G I EG + I
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDS 93
Query: 932 PKNQETFARVSGYCEQNDIHSP---YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
N R G Q P Y + +L Y+ ++RK +DE++E
Sbjct: 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG----------ERRKSVLDEIVEE 143
Query: 989 VELKS-LNDSMVGLPGVSGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 1038
K+ L D + S LS Q++RL IA L P+++ +DEP S LD
Sbjct: 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPK 933
Q L VS +TA++G SG GK+T + + + +EG++ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 934 NQETFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRL---SSDVDTK-----KRKMFVD 983
+ + A R G Q P ++Y+++ Y L++ D+D + +R D
Sbjct: 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGDIDERVEESLRRAALWD 168
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
EV + ++ L+ LS Q++RL IA + +P +I MDEP S LD A +
Sbjct: 169 EVKDQLDSSGLD-----------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217
Query: 1044 IVMRTVRNTVDTGRTVVCTIH 1064
+ + + TVV H
Sbjct: 218 KIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND 949
RPG + G SGAGKT+L+ LAG + G I P + + Q
Sbjct: 416 VRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-----FLPQ-- 463
Query: 950 IHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL-PGVS 1005
PY+ T+ E+L Y + D + V+ V L L + +
Sbjct: 464 --RPYLPQGTLREALCYP---NAAPDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDR 514
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+ H+
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHR 573
Query: 1066 PSIDIFEAFDELLLLKRGG 1084
P++ F + +L LL G
Sbjct: 574 PTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFARVSGYCE 946
PG + AL+G +GAGK+T+M VL G + G I ++ +G +QE A +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 947 QNDIHS-----PYVTVYESLLY-----SAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
IH P +T+ E++ + + R+ +KM+ E +L L LN
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMY-AEADKL--LARLNL 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
V LS +++ + IA L +I MDEPT L + R +R G
Sbjct: 132 RFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRG 1083
R +V H+ +IFE D++ + + G
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+V L+D+S V+ L+GP G GK+TL+ +AG SG++ G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P Y+ Q D +TV + + GV + E +
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAEARE----- 110
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ ++ V ++G E + +SGG ++RV L
Sbjct: 111 -RAEELLELVGLSGFE-----------------------NAYPHQLSGGMRQRVALARAL 146
Query: 358 VGTANVLYMDE 368
+VL +DE
Sbjct: 147 AVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 56/261 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KR +++ VS VK + LLGP GAGKTT + G + D SGKI
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKI-------- 57
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-----ELLAELSRREKQAGI 294
+ D+ M R L G+G Y + +L+ E
Sbjct: 58 ---------LLDGQDITKLPMHKRARL-------GIG--YLPQEASIFRKLTVEEN---- 95
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
I A ++ ++ +E + +L+ + + +SGG+++RV
Sbjct: 96 -----ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIA 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFD 412
L L +DE G+D I ++++ IL I L+ ET + D
Sbjct: 146 RALATNPKFLLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
++ EG+++ +G + +
Sbjct: 202 RAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
+ + DV+ ++ +L+GP G+GKTT + + + SG+I G ++++ P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71
Query: 244 --QRTCAY-ISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+R Y I Q L H +TV E + + LG R +K+A
Sbjct: 72 ELRRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKE--------RIKKRA------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L ++GLD + D +SGGQ++RV L
Sbjct: 115 --------------------DELLDLVGLD---PSEYADRYPHELSGGQQQRVGVARALA 151
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L MDE LD T Q+ + +K++ L T IV + E L D I ++
Sbjct: 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMD 210
Query: 419 EGQIVYQGPRDNVL 432
G+IV D +L
Sbjct: 211 AGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 44/240 (18%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252
V + +LGP GAGK+TL+ +AG ASG+I G + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
+ +TV + + LG+ +L AE +REK ++A V +AG
Sbjct: 79 ENNLFAHLTVAQNIG-----LGLSPGLKLNAE--QREK---------VEAAAAQVGLAGF 122
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L + +SGGQ++RV LV +L +DE +
Sbjct: 123 LKRLPGE-----------------------LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
LD + ++ + Q+ +T+++ P + + D ++ L G+I QG +L
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQN 948
G A++G SGAGK+TL++++AG T G + ++G +R VS ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 949 DIHSPYVTVYE--SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
++ ++TV + L + L+L++ ++ K+ + + D + LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA---QREKL-----HAIARQMGIEDLLARLPG--Q 129
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 32/192 (16%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--NQ 935
D ++L VS +TA++G SG GK+T + L +E ++++ G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 936 ETFAR---VSGYCEQNDIHSPY-----VTVYESLLYS----AW---LRLSSDVDTK-KRK 979
+ R ++ Q + P ++VY+++ Y W L + V++ K
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDA 134
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
DE+ + +L+ LS Q++RL IA L P ++ MDEP GLD
Sbjct: 135 DLWDEIKHKIHKSALD-----------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 1040 RAAAIVMRTVRN 1051
A+ V +++
Sbjct: 184 IASMKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA--RVSGYCEQNDIHSPY 954
AL+G +G+GK+TL +L G EG+I++ G P + + + R Q D P
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD---P- 424
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-GLPGVSG-----LS 1008
V + ++ L A + L D+ ++ V + +E V+L L S+ GL G LS
Sbjct: 425 VVLADTFL--ANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST 537
Query: 1069 DIFEAFDELLLLKRGGRV 1086
I EA D +L+L RG V
Sbjct: 538 -IVEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 56/174 (32%)
Query: 874 GVGEDRLQLLHSVSGV-F--RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
G G + + + +V GV F + G L+G SG GK+TL ++ G T G EG
Sbjct: 17 GKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK- 75
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
DI + ++R+ + V+
Sbjct: 76 ----------------------DIT--------------------KLSKEERR---ERVL 90
Query: 987 ELVELKSLNDSMVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
EL+E L + + P LS QR+R+ IA L NP +I DEP S LD
Sbjct: 91 ELLEKVGLPEEFLYRYP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT 918
E++ D +L +V+ +TAL+G SG GK+T + D++ G +
Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 919 GGYIEGDIKISGYPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
G+I D Y + + G Q P ++++++ Y LR+ + D
Sbjct: 62 EGHIYLDGV-DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDED 117
Query: 977 KRKMFVDEVMELVEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
+ V+E ++ L L+ S +GL G Q++RL IA + +P +I MD
Sbjct: 118 FIEERVEESLKAAALWDEVKDKLDKSALGLSG------GQQQRLCIARTIAVSPEVILMD 171
Query: 1032 EPTSGLD 1038
EP S LD
Sbjct: 172 EPCSALD 178
|
Length = 250 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 72/310 (23%), Positives = 109/310 (35%), Gaps = 85/310 (27%)
Query: 802 SNSTVIE--EDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDN 859
S S V+E + G AS H EG + A + R P T D
Sbjct: 618 SPSVVVEDTDYGSPSSASRHIVEG-------GTGGGHEATPTSERS---AKTPKMKTDD- 666
Query: 860 MSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+F P LL VS G LT ++G +G+GK+TL+ L
Sbjct: 667 --FFELEPKV------------LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS---- 708
Query: 920 GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY---SAWLRLSSDVDTK 976
Q +I V S+ Y AW+ + +
Sbjct: 709 ---------------------------QFEISEGRVWAERSIAYVPQQAWIM---NATVR 738
Query: 977 KRKMFVDE-----VMELVELKSLNDSMVGLPGVSGLSTE-----------QRKRLTIAVE 1020
+F DE + + V + L + L G GL TE Q+ R+++A
Sbjct: 739 GNILFFDEEDAARLADAVRVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARA 796
Query: 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080
+ AN + +D+P S LDA V+ G+T V HQ + + D ++ L
Sbjct: 797 VYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVAL 854
Query: 1081 KRGGRVIYAG 1090
GRV ++G
Sbjct: 855 GD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 984 EVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
+ + +E K D++VG G LS +R+RL IA L+ +P I+ +DE TS LD
Sbjct: 449 QAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
A V + + + GRT H+ S + A D +L+ GRV+ +G
Sbjct: 508 AKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 896 TALMGVSGAGKTTLMDVLAG--RKTGGYI----------EGDIKISGYPKNQETFARVSG 943
TA+ G SGAGKT+L++ ++G R G I E I + P + R G
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL---PPEK----RRIG 79
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Y Q+ P+ V +L Y K D+++ L+ ++ L D P
Sbjct: 80 YVFQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVALLGIEPLLDR---YP- 126
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 -GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 43/250 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ +KP ++GP GAGKTTL+ L G+I G ++ +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRD----- 69
Query: 246 TCAYISQHDLHHGEMTV-RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
IS+ L V ++T FSG + E +P+ + +
Sbjct: 70 ----ISRKSLRSMIGVVLQDTFLFSG---------------TIMENIRLGRPNATDEEVI 110
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+A AG D+++K+ G DT++G E +S G+++ + ++ +
Sbjct: 111 EAAKEAG-----AHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLRDPKI 160
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ +D+ T I + L++++ +I L T D I++L +G+I+
Sbjct: 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS----TIKNADKILVLDDGKII 216
Query: 424 YQGPRDNVLE 433
+G D +L
Sbjct: 217 EEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYIS 251
V+P LLG GAGKTT L G SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTV---TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q D +T RE L R GV P EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV--------------------PAEEIEK--------- 2049
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
V ++ ++ LGL + AD + G SGG K++++T L+G ++ +DE +T
Sbjct: 2050 -----VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 372 GLD 374
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 57/230 (24%)
Query: 865 DMPAEMKTEGVGEDRLQLLH-SVSGVFRPGVLTA-------LMGVSGAGKTTLMDVLAGR 916
D+ E EG+GE L++ + S G R T + G+ GAG+T L L G
Sbjct: 249 DLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA 308
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP---------YVT----------- 956
+ G+I + G + I SP YV
Sbjct: 309 R--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351
Query: 957 --VYESLLYSAWLRLSSD--VDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSGLSTE 1010
+ E++ ++ R S +D +K + + + + +K S + L G G
Sbjct: 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSG--G---N 406
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
Q+K + +A L +P ++ +DEPT G+D A A + R +R G+ ++
Sbjct: 407 QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV--SG 943
VS R G + + G+ GAG+T L+ L G G + EG++ I+G P + A+ +G
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAG 337
Query: 944 YC---EQNDIHS--PYVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELVELKSLND 996
E H P + V +++ S +D + ++ +++K+ +
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
LP + LS +++ +A L+ NP ++ +DEPT G+D A + + + G
Sbjct: 398 F---LP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 1057 RTVV 1060
++
Sbjct: 454 VAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV L VL DE ++ LD +TT I + LK++ L +T I+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITH 199
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
+ D + ++S G+++ QG V E F H
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 55/254 (21%)
Query: 196 PSR-MTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVPQRTCAYISQ 252
P+R +T L+GP G+GKTT + L K R SG + G + +
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY----------- 93
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA---- 308
R+ L+F R VG ++ +P+P + M V
Sbjct: 94 ----------RDVLEFRRR---VGMLFQ--------------RPNPFPMSIMDNVLAGVR 126
Query: 309 ----VAGQETSLVTDYVLKILGL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V +E V L +GL D D + R +SGGQ++ + L V
Sbjct: 127 AHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEV 184
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ LD +TT +I +F++ + L V ++ L A + D L +G++V
Sbjct: 185 LLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---ISDRAALFFDGRLV 241
Query: 424 YQGPRDNVLEFFEH 437
+GP + + +H
Sbjct: 242 EEGPTEQLFSSPKH 255
|
Length = 276 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-05
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
+++YE++ + DV + +DE +E L + D+ VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1065
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 41/194 (21%)
Query: 881 QLLHSVS-GVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 930
Q+L ++ +++ V TA +G SG GK+T + D + K ++G++ I G
Sbjct: 19 QILFDINLDIYKREV-TAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGID 73
Query: 931 -YPKNQETF---ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
Y + A+V G Q P ++Y+++ Y +L KK+ +DE++
Sbjct: 74 VYSVDTNVVLLRAKV-GMVFQKPNPFPK-SIYDNVAYGP--KLHGLAKNKKK---LDEIV 126
Query: 987 E--------LVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E EL L DS L G Q++RL IA + P+++ MDEP S L
Sbjct: 127 EKSLTSVGLWEELGDRLKDSAFELSG------GQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 1038 DARAAAIVMRTVRN 1051
D A ++ ++
Sbjct: 181 DPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 13/173 (7%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH 951
G + G +GAGKTTL+ VLAG G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011
++ E+L + L ++ K + +V L D++ V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--EGDIKISGYPKNQET 937
+L+++S R G + G SG GK+TL+ ++A T G + EG+ IS E
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DISTLKP--EI 78
Query: 938 FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ + YC Q +P + TVY++L++ +R +F+D++ +L
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERF----AL 126
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D+++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 127 PDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
++L ++ G + A+MG +G+GK+TL V+AG +EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 941 VS------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKM-------FVDEVME 987
+ + Q I P V+ + +LRL+ + K + + F++ + E
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVS------NADFLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
++L ++ S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1048 TVRNTVDTGRTVVCTIH 1064
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 31/242 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKNQE 936
L+ +S G TAL+G +G+GK+T+ + G + D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 937 TFARVS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
T + G QN D TV + + + R V + V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGML 134
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1051
DS P + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 135 DYIDSE---P--ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1052 TVDTGRTVVCTIHQPSIDIFEA--FDELLLLKRGGRVIYAGPLG-HESHKLIEYFEVSIP 1108
TV+ H DI EA D++L+L G + P+ ++++ + IP
Sbjct: 190 KKKNNLTVISITH----DIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIP 245
Query: 1109 FF 1110
F
Sbjct: 246 FV 247
|
Length = 282 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+L +++ +KP ++GP G+GK+TL KL + L + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----KLLQRL---------------YTPQH 511
Query: 246 TCAYISQHDLHHGE-MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ DL + +R R +GV + +L S R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +AG D+ I L +T VG E +SGGQ++R+ LVG +L
Sbjct: 565 HAAKLAGAH-----DF---ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
DE ++ LD + I + ++++ V +I L T D II+L +GQI
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS----TVRACDRIIVLEKGQIAE 671
Query: 425 QGPRDNVL 432
G + +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFA 939
+VS + G + ++G SGAGKTTL ++AG T G + GD + +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 940 RVSGYC----EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R Y ++ D++ P+ TV ++L + L L ++ + K + M + +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEKAE 418
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-- 1053
+ + P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1054 ---DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ +T + H +D + L R G+++ G
Sbjct: 473 AREEMEQTFIIVSH--DMDFVLDVCDRAALMRDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY----- 931
Q L ++ G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 932 ----PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
K R G Q P++TV ++L+ A R+ + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALA----RAEK 124
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1048 TVRNTVDTGRTVVCTIHQ 1065
+R +TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 58/221 (26%)
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
L NV+L + S L L +V+ + + L+GP G GK+TL+ +
Sbjct: 4 CLKNVSLRLPGSCL---------------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWM 48
Query: 218 AGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
G L +G++ L+ +P QR + Q L ++V + L F+
Sbjct: 49 IGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPHLSVGQNLLFA------ 101
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
+ + +A A A + + L
Sbjct: 102 ------------------LPATLKGNARRNAANAALERSGL----------------DGA 127
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
+ +SGGQ+ RV L+ L +DE + LD +
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 67/281 (23%), Positives = 109/281 (38%), Gaps = 81/281 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LK ++ S +T L+G G GK+TL + L+G L G + + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQG---------- 62
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF-- 303
+ LD+S R L L+ R++ A + DPE F
Sbjct: 63 ------------------KPLDYSKRGL-----------LALRQQVATVFQDPEQQIFYT 93
Query: 304 ---------MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGGQKK 349
++ + V E + D L T+V + R +S GQKK
Sbjct: 94 DIDSDIAFSLRNLGVPEAEITRRVDEAL----------TLVDAQHFRHQPIQCLSHGQKK 143
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----HILDVTMIVALLQPAP 405
RV LV A L +DE + GLD + Q+ ++++V H++ + + L+
Sbjct: 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI---- 199
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCP 443
Y++ D + +L +GQI+ G V E E G P
Sbjct: 200 --YEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 50/181 (27%), Positives = 67/181 (37%), Gaps = 45/181 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253
V L+ G GAGKTTL+ LAG L + SG+I G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQE 313
+++ E L F L RR KQ M A+A
Sbjct: 91 PGLKADLSTLENLHF------------LCGLHGRRAKQ------------MPGSALA--- 123
Query: 314 TSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL 373
I+GL DT+V R +S GQKKR+ + + A + +DE L
Sbjct: 124 ----------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 374 D 374
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G LT ++G G GK++L+ + G +EG + S +++ +F E +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSF-------EATRSRN 77
Query: 953 PYVTVYESLLYSAWLRLSSDVD---------TKKRKMFVDEVMEL---VELKSLND-SMV 999
Y Y + WL L++ V+ K+R V + L ++L D + +
Sbjct: 78 RYSVAYAA--QKPWL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGR 1057
G G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D R
Sbjct: 135 GERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 1058 TVVCTIHQ 1065
T+V H+
Sbjct: 194 TLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 50/209 (23%), Positives = 81/209 (38%), Gaps = 39/209 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE----LNE 240
+ L D+S V P + +L+GP GAGKTTLM + GK G++ + G L E
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPE 75
Query: 241 F-VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ + Q +TVRE L+ L + + A L R +
Sbjct: 76 HRIARAGIGRKFQKPTVFENLTVRENLE-----LALNRDKSVFASLFARLRAE------- 123
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ D +L +GL D + +S GQK+ + G +L
Sbjct: 124 ------------ERRR--IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQM 388
+L +DE G+ + T + + LK +
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
V ++L+E+ L+ + + LS +++R+ +A +L P + DEPT LD +
Sbjct: 146 VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203
Query: 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
A +V + V +G ++V T H P + I + D+ + L+ G
Sbjct: 204 AKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 6e-05
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 970 SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029
S VD K+ + D V L + +++VG S LS Q++R++IA ++ NP I+
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKY---ETLVG-SNASKLSGGQKQRISIARAIIRNPKILI 602
Query: 1030 MDEPTSGLDARAAAIVMRTVRN 1051
+DE TS LD ++ +V +T+ N
Sbjct: 603 LDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 40/211 (18%)
Query: 862 YFVDMPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--- 914
Y D A++ E + G+D L VS +TAL+G SG GK+T + L
Sbjct: 38 YEFDGDAKLSVEDLDVYYGDDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95
Query: 915 GRKTGGYIEGDIKISGYPKNQETFARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRL 969
R I+G +++ G Q+ V G Q+ P ++ E++ Y R
Sbjct: 96 DRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGP--RK 152
Query: 970 SSDVDTKKRKMFV-----DEVMELVE--LKS----------LNDSMVGLPGVSGLSTEQR 1012
D++T + D ELVE L+ L+D+ +GL G Q+
Sbjct: 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG------GQQ 206
Query: 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+RL IA L +P +I MDEP S LD A +
Sbjct: 207 QRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 33/236 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQET 937
L+ L +VS G A++G +G+GKTT ++ L G IE K KN++
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE---KNKKK 76
Query: 938 FARVSGYCEQNDIHSPYV--------------TVY---ESLLYSAWLRLSSDVDTKKRKM 980
E+ I V+ E L+ + D+ M
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ--TIEKDIIFGPVSM 134
Query: 981 FVDEVMELVELKSLNDSMVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034
V + E + + +VGL LS Q++R+ +A L P + DEPT
Sbjct: 135 GVSK-EEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193
Query: 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+GLD + ++ N G+T++ H +D + + + + G++I G
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVS 942
VS R G A++G +G+GK+TL +LAG T G +I I+ +P + ++ S
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRS 86
Query: 943 G-----YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL----KS 993
+ + N +P + + + LRL++D++ ++R+ + E + +V L +
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN 144
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
M L+ Q++R+ +A L+ P II DE + LD
Sbjct: 145 YYPHM--------LAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 82/268 (30%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA----SGKITYCGHELNEF 241
+LK +S +K LLG G GK+TL+ L RA G+I G + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-------RAWDPQQGEILLNGQPIADY 407
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
V QR ++ T+R+ L LLA
Sbjct: 408 SEAALRQAISVVSQRV--HLFSA-------TLRDNL--------------LLA------- 437
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
P+ +A ++ + G E L D GL+ +G E R +SGG+++R
Sbjct: 438 ----APNASDEALIEVLQQVGLEKLLEDD-----KGLN----AWLG-EGGRQLSGGEQRR 483
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV------ALLQPA 404
+ L+ A +L +DE + GLD+ T QI + L + H + T+++ L Q
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMITHRLTGLEQ-- 539
Query: 405 PETYDLFDDIILLSEGQIVYQGPRDNVL 432
FD I ++ GQI+ QG +L
Sbjct: 540 ------FDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 334 MVG-----DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
MVG D M +SGGQ++RV L V+ DE+++ LD ++ ++++
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 389 VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGV 448
D+TM++ + + D + +G+IV QG D E F P+ +
Sbjct: 193 ASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPD---EIFRQ-----PKEERT 243
Query: 449 ADFLQEV 455
+FL +V
Sbjct: 244 REFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 25/139 (17%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ +DE ++ LD + QI K ++++ ++T+I
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI--- 200
Query: 403 PAPETYDL-----FDDIILLSEGQIVYQG-PRD--NVLEFFEHMGFKCP---------ER 445
T+D+ D +++L +G+++ QG P + + +E + +G P +
Sbjct: 201 ----THDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKE 256
Query: 446 KGVADFLQEVTSKKDQEQY 464
KG++ QE+ +++ QY
Sbjct: 257 KGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 7e-05
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L + G + AL+G +GAGK+TLM ++AG G ++I G P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAH 84
Query: 943 GY----CEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
Q + P ++V E++L+ L + ++ + +L L +L +
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK------MKQL--LAALGCQL 132
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
L R+ + I L+ + I+ +DEPT+ L
Sbjct: 133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE---- 946
RPG + A+MG +G+GK+TL LAGR+ G ++ G K+ + E
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG--KDLLELSPEDRAGEGIFM 82
Query: 947 --QNDIHSPYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Q + P V+ + L +A +R + R F D + E + L + + ++
Sbjct: 83 AFQYPVEIPGVS-NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS 141
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G S ++KR I V P + +DE SGLD A IV V + D R+ +
Sbjct: 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIV 201
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
H I + D + +L + GR++ +G
Sbjct: 202 THYQRILDYIKPDYVHVLYQ-GRIVKSG 228
|
Length = 248 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETL 266
+TL+ + G L SG I G + ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326
F R + + + L+ +G
Sbjct: 58 FFGLR--------------------------------------DKEADARAEE-ALERVG 78
Query: 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L D + SGGQK+RV L+ +L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG--------HELN 239
+DVS + P + ++G G+GKTTL+ ++G+L D +G +TY + ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 240 E----FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY--ELLAELSRREKQAG 293
E + + ++ Q+ M V + R + +G R+ + AE ++
Sbjct: 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I D ID ++ R SGG ++R+
Sbjct: 140 IDLD-RID------------------------------------DLPRTFSGGMQQRLQI 162
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
LV +++MDE + GLD S ++ L+ +V L + +++ T+DL
Sbjct: 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-------THDLAVA 215
Query: 412 ----DDIILLSEGQIVYQGPRDNVLE 433
D ++++ +GQ+V G D VL+
Sbjct: 216 RLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 9e-05
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 866 MPAEMKTEGVG--EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGG 920
M ++K GV + Q+L +++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 921 YIEGDIKISG---YPKNQETF---ARVSGYCEQNDIHSPY-VTVYESLLY-------SAW 966
+EG + + Y N + RV +Q + P+ ++++++ + +A
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFGPRMLGTTAQ 117
Query: 967 LRLSSDVDTKKRKMFV-DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
RL V+ R+ + DEV + +L+ S + L G Q++RL IA L P
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKD-----NLHKSGLALSG------GQQQRLCIARVLAIEP 166
Query: 1026 SIIFMDEPTSGLD 1038
+I MDEP S LD
Sbjct: 167 EVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-05
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 874 GVGEDRLQ--LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG- 930
GV + ++ +L +++ +PG + A++G SGAGKTTL+ ++ G + G E SG
Sbjct: 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK 447
Query: 931 --YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
PKN + Y + VT+ E L + D++ +E+
Sbjct: 448 VEVPKNTVSALIPGEYEPEFG----EVTILEHLR-----SKTGDLNAA---------VEI 489
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L+D+++ S LST Q++R +A L P+++ +DE + LD A V R
Sbjct: 490 LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549
Query: 1049 VRNTV-DTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRV 1086
+ + G T++ H+P ++ A D L+L+ G
Sbjct: 550 ISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 332 DTMVGDEMRRG--ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ RG +SGG+K+RV ++ +L +DE ++ LD+ T +I L+ +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 390 HILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+I L T D II+L +G+IV +G + +L
Sbjct: 185 KGRTTIVIAHRLS----TIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHG 258
T ++GP G+GK+TL+ +A G + SG++ G ++ P R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318
+TV + + LG+ +L AE R+ + K +
Sbjct: 84 HLTVEQNVG-----LGLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP---------- 126
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+SGG+++RV +LV VL +DE LD +
Sbjct: 127 ----------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ + + +T+++ QP + L ++ L G+I QG
Sbjct: 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 53/244 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTT---LMLALAGKLGKDLRASGKITYCGHELNEFV 242
+L+DVS + P +T L+GP G+GK+T L+ G G++ G ++++
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLDGKPISQY- 81
Query: 243 PQRTCAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+H H ++++ +E + F+ S ++ A
Sbjct: 82 ---------EHKYLHSKVSLVGQEPVLFAR---------------SLQDNIAYGLQSCSF 117
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLV 358
+ +A A + I L DT VG+ +G +SGGQK+RV L+
Sbjct: 118 ECVKEAAQKAHAHSF--------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARALI 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL +DE ++ LD+ + Q+ + L V +I L T + D I++L
Sbjct: 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS----TVERADQILVLD 222
Query: 419 EGQI 422
G+I
Sbjct: 223 GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILK V+ +K + L+GP G+GK+TL + G ++ G+I + G ++ +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 65/253 (25%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEFV 242
L ++ V+P L+GP GAGK+TL L LR SG+I G +L +
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL-------LRFYDPQSGRILLDGVDLRQLD 408
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
P R + D +V E + + GR PD
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRY-GR------------------------PDAT- 442
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLV 358
D ++A A A I L DT +G+ RG+ SGGQ++R+ ++
Sbjct: 443 DEEVEAAARAAHAHEF-------ISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAIL 492
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA----LLQPAPETYDLFDD 413
A +L +DE ++ LD+ + + + L+ M T+I+A + A D
Sbjct: 493 KDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAHRLATVLKA-------DR 543
Query: 414 IILLSEGQIVYQG 426
I+++ +G+IV QG
Sbjct: 544 IVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP 932
L VS R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 56/228 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+IL+ VS + S++T ++GP G GK+T + L + +NE
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL------------------NRMNEL--- 59
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG-IKPDPEI--- 300
E+ V ++F + + YE L+R +Q + P P +
Sbjct: 60 ------------ESEVRVEGRVEFFNQNI-----YERRVNLNRLRRQVSMVHPKPNLFPM 102
Query: 301 ---DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI-------SGGQKKR 350
D V + G L D +++ D + DE++ I SGGQ++R
Sbjct: 103 SVYDNVAYGVKIVGWRPKLEIDDIVE----SALKDADLWDEIKHKIHKSALDLSGGQQQR 158
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
+ L VL MDE GLD + ++ ++ + ++TM++
Sbjct: 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQND 949
G TA++G +G GK+TL+ L+ T G + + G + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 950 IHSPYVTVYESL---------LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+TV E + L++ W + D + + M + L
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHL-----------A 137
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 38/181 (20%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ- 935
L +V+ V R + +L+G +GAGKTT+ + L G + TGG I + I G P +Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 936 ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDV-----DTKKRKMFVDE 984
TF V + E +TV E+LL + +L + + T + E
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 985 VMEL-------VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
++ V L + G L+ Q++RL IA +V P I+ +DEP +GL
Sbjct: 130 ALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1038 D 1038
+
Sbjct: 185 N 185
|
Length = 255 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYPKNQETFARVSGYCE 946
+TA++G SG GK+T + D++ T G + D + I G ++ + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 947 QNDIHSPYVTVYESLLYSAWL-------RLSSDVDTKKRKMFV-DEVMELVELKSLNDSM 998
Q P ++++++ Y L +L V+ RK + DEV + ++ +L
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYIEGDIKISGYPKNQET 937
L +++ +TA++G SG GK+T ++++ + G++ +G +
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 938 FARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
V G Q P ++++++ Y R+ + KK + V++ ++ V L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+ + + F +TAL+G SG+GK+T + L + I+ AR
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDI--------------AR 77
Query: 941 VSG--YCEQNDIHSPYVTVYE-----------------SLLYSAWLRLSSDVDTKKRKMF 981
V+G DI+ + VYE S+ + L K K
Sbjct: 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERA--GVKDKKV 135
Query: 982 VDEVMELVELK----------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
+DE++E LK L+ S + L G Q++RL IA + P I+ MD
Sbjct: 136 LDEIVE-TSLKQAALWDQVKDDLHKSALTLSG------GQQQRLCIARAIAVKPDILLMD 188
Query: 1032 EPTSGLD 1038
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 63/283 (22%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R+ +L D++ +K +++T +GP G GK+T + L ++LN+
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL------------------NQLNDL 134
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI--KPDPE 299
+ + H GE+ LG TR + ++ L R + + KP P
Sbjct: 135 IEGTS---------HEGEIYF----------LGTNTRSKKISSLELRTRIGMVFQKPTPF 175
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-------RGISGGQKKRVT 352
+ VA + + +L+ + + DE++ +SGGQ++R+
Sbjct: 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKF---LKQMVHILDVTMIVALLQPAPETYD 409
+ VL MDE ++ LD T +I + LK+ I+ VT +A Q
Sbjct: 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ------R 289
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D+ + +G I G + F P+ K D++
Sbjct: 290 ISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 44/215 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +L+D++ V+ +LGP G GK+TL+ +AG SG++ G +
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG-- 69
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
P Y+ Q D +TV + + G S+ E +
Sbjct: 70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARE------RAKE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
++ V +AG E D+ +SGG ++RV L
Sbjct: 114 LLELVGLAGFE-----------------------DKYPHQLSGGMRQRVAIARALATRPK 150
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+L +DE LD+ T ++ L ++ T++
Sbjct: 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNE---- 240
+K+V+ V+ + L+GP G GKTT + A+ L R +G+I G ++
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 241 -FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M+V + + + G+ R L+ R + A + E
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD--E 137
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ +K A G+SGGQ++R+ L
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDI 414
+L MDE ++ LD ++T +I + + + + ++ + A D L D+
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
Query: 415 ILLSEGQIVYQGPRDNVLEFF 435
+ ++ PRD E +
Sbjct: 226 VEHGPTDQLFTNPRDERTEAY 246
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVP 243
+LKD+S +KP L+ GP G GK++L ALAG G SG+I E F+P
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-----SGRIGMPEGEDLLFLP 70
Query: 244 QR 245
QR
Sbjct: 71 QR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 173 LLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LL L V +IL ++S ++ L+ GP G GK+TL+ +A + SG
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGT 63
Query: 231 ITYCGHELNEFVPQR---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+ + G +++ P+ +Y +Q G+ TV + L F +++
Sbjct: 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI------ 107
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
R +Q PDP F+ + IL +I +SGG+
Sbjct: 108 RNQQ----PDP--AIFLDDLERFALP--------DTILTKNIAE-----------LSGGE 142
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSS 376
K+R++ L VL +DEI++ LD S
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGY 931
RL +L +VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 932 PKNQETFARVS--GYCEQNDIHSPYVT----VYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ R GY Q P V+ V E LL R ++
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA----------RA 129
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
EL+ ++ + + LP + S +++R+ IA +A+ I+ +DEPT+ LDA +V
Sbjct: 130 RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSI 1068
+ + G ++ H +
Sbjct: 189 VELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFARVSGYC 945
G + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
TV + LL S + F E+ + ++++ + D V
Sbjct: 77 ----------TVRD-LLSSITKDFYTH------PYFKTEIAKPLQIEQILDREV-----P 114
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
P + L++GPPG+GKTTL ALA +LG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 1004 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1060 VCTIHQPSIDIFEAFDELLLLKR 1082
+ H P ++ E D+L+ +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKN 934
Q L +VS +TAL+G SG GK+T + L IEG + I G Y +
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 935 QET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ + G Q P +++Y+++ Y + + K V+ + L
Sbjct: 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALW 141
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ P +S LS Q++RL IA L P II DEPTS LD + A + + N
Sbjct: 142 DETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN- 199
Query: 1053 VDTGRTVVCTIH 1064
+ T+V H
Sbjct: 200 LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L DVS + +T ++GP GAGK+TL+ ++ L KD SG+IT G EL +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGR 271
+ + + Q + + +TVR+ + F GR
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF-GR 100
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQ-ETFARV 941
+S G + G+ G+G+T LM+ L G R G IS P++ + +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVKKG 339
Query: 942 SGYCEQNDIHSPY---------VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
Y ++ + + + + SL + + + EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 993 --SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
S+N + ++ LS ++++ I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQN------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1051 NTVDTGRTVV 1060
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-04
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 883 LHSVSGVFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFA 939
L G G V+ + G +G GKTT +LAG G ++ ++KIS Y K Q
Sbjct: 355 LEVEGGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQYIKP 411
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
G TV + LL S L S + E+++ ++L+ L D V
Sbjct: 412 DYDG------------TVED-LLRSITDDLGS-------SYYKSEIIKPLQLERLLDKNV 451
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-04
Identities = 72/266 (27%), Positives = 105/266 (39%), Gaps = 78/266 (29%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V+ L VS V+P + LLG GAGK+TLM L+G D SG+I G + F
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG-KPVAF-- 74
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE---LLAELS-------RREKQAG 293
+ R+ L G+ T ++ L+ LS RE
Sbjct: 75 ----------------SSPRDALA-----AGIATVHQELSLVPNLSVAENIFLGREPT-- 111
Query: 294 IKPDPEID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ ID M+ A +L LGLDI DT+VGD +S Q++ V
Sbjct: 112 -RRFGLIDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMVE 155
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTT---FQICKFLKQ----MV---HILDVTMIVALLQ 402
L A VL +DE + L T F + + LK ++ H LD
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD--------- 206
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPR 428
E +++ D I +L +G++V P
Sbjct: 207 ---EVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R +L + + +DE LD + QI K L+++ L T++V L
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-- 193
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
+D+ D I+ L G++V QG D +++
Sbjct: 194 -----HDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+ +S ++ ++GP G+GK+TL + +G SG + G +L
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLK----- 383
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Q D RET G+ +G + L + E A + + + +
Sbjct: 384 -------QWD--------RETF---GKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+A +AG V + IL L DT++G +SGGQ++R+ L G ++
Sbjct: 426 EAAKLAG-----VHEL---ILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYGDPKLV 476
Query: 365 YMDEISTGLDSSTTFQICKFLKQM----VHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+DE ++ LD + +K + + ++ +T +LL D I++L +G
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-------DKILVLQDG 529
Query: 421 QIVYQGPRDNVL 432
+I G RD VL
Sbjct: 530 RIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 54/272 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
+ +++ + +L+GP G+GKTT M + + SG+I G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS-RREKQAGIKPDPEIDA 302
+R Y+ Q MTV E + +LL + ++A
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEEN---------IALVPKLLKWPKEKIRERA---------- 114
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
D +L ++GLD D +SGGQ++RV L
Sbjct: 115 ----------------DELLALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPP 155
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L MDE LD T Q+ + K++ L T IV + E + L D I ++ G+I
Sbjct: 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEI 214
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454
V G D +L + P VA+F+
Sbjct: 215 VQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 49/233 (21%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKI 231
L + +KK++ L VS P+ +T L+GP G+GK+TL+ ++ L ++ +G I
Sbjct: 11 LSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 232 TYCGHELNEFVPQRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285
Y GH N + P+ + + + M++ E + + R G+ + L +
Sbjct: 68 VYNGH--NIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345
+ K A I + + D D+ +G +SG
Sbjct: 126 EKSLKGASIWDEVK----------------------------DRLHDSALG------LSG 151
Query: 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
GQ++RV +L + ++ +DE ++ LD + +I + L + D TM++
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLL 202
|
Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
LKD+S VK LLGP G GKTTL+ +A G + + +G I G ++ PQ
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQ 74
Query: 245 R 245
+
Sbjct: 75 K 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 38/178 (21%), Positives = 57/178 (32%), Gaps = 50/178 (28%)
Query: 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLH 256
+ GP G+GKTTL+ LAG +G++ G L+ R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
++V E L F E LA V + G E
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEALAR----------------------VGLNGFE--- 119
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
D + S GQ++RV +L+ + +DE +T LD
Sbjct: 120 -----------DRPVAQL---------SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 53/252 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK V+ ++ L+G G GK+TL+ ++ G SG + G ++ E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRM 57
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
+ + L +TVRE + + +L +LS+ E++A
Sbjct: 58 VVFQNYSLLPW--LTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + + ++GL AD G +SGG K+RV L VL +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY-- 424
DE LD+ T + + L Q+ VT+++ T+D+ D+ +LLS+ ++V
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD-RVVMLT 189
Query: 425 QGPRDNVLEFFE 436
GP N+ + E
Sbjct: 190 NGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 48/252 (19%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + V DVS K + ++GP GAGKTTL+ L G+I G +
Sbjct: 345 ANSSQGVF---DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGID 398
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+N +++ L TV + R + R +
Sbjct: 399 INT---------VTRESLRKSIATVFQDAGLFNRSIRENIRLG--------------REG 435
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ +A A D++LK DT+VG+ R +SGG+++R+ +
Sbjct: 436 ATDEEVYEAAKAAA-----AHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAI 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---VTMIVALLQPAPETYDLFDDI 414
+ A +L +DE ++ LD T ++ K + L T I+A DL +
Sbjct: 487 LKNAPILVLDEATSALDVETEARV----KNAIDALRKNRTTFIIAHRLSTVRNADL---V 539
Query: 415 ILLSEGQIVYQG 426
+ L +G+++ +G
Sbjct: 540 LFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 45/249 (18%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLH 256
T ++GP G GK+TL+ L+ + A G + G + + + R ++Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
G++TV+E L RY +R K+ + +A KA+ G T L
Sbjct: 93 PGDITVQE--------LVARGRYPHQPLFTRWRKE-------DEEAVTKAMQATGI-THL 136
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
V DT+ SGGQ++R +L ++ +DE +T LD S
Sbjct: 137 ADQSV----------DTL---------SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVL-EF 434
+ + L ++ T+ A+L + +I L EG+IV QG P++ V E
Sbjct: 178 HQIDLLELLSELNREKGYTL-AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 435 FEHM-GFKC 442
E + G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
+LH +S P ++G +GAGK+++++ L + +G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLTDL 1308
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDS 997
RV Q SP +L+S +R + D ++ + E +E +K ++ +
Sbjct: 1309 RRVLSIIPQ----SP-------VLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357
Query: 998 MVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ T++ H+ + I D++L+L G + Y P
Sbjct: 1418 FKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSP 1453
|
Length = 1495 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ 935
D L+ + +S R G L+G SG+GK+TL G I +G+I+ G +
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 936 ETFARVSGYCEQNDIH----------SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ + + + SP +TV ++ + +R V E
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 986 MELVELKSLNDSMVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+E VGL + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LE----------EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 18/246 (7%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPK 933
E + L+ VS G +++G +G+GK+T ++ G EG +KI G +
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 934 NQETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
N R G QN D TV + + + + + KR VDE + V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNML 131
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D P + LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 132 ---DFKTREP--ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP--LGHESHKLIEYFEVSIPFF 1110
+ + V +I +D + D +L++K G + A P L S ++E + +PF
Sbjct: 187 KEKYQLTVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVE-IGLDVPFS 244
Query: 1111 PALSVD 1116
L D
Sbjct: 245 SNLMKD 250
|
Length = 277 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 48/208 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+D++ ++ + ++LGP G GKTTL+ +AG + G IT G + +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAE 71
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R + Q++ G + R D + G + LA + + ++
Sbjct: 72 R--GVVFQNE---GLLPWRNVQD----NVAFGLQ---LAGVEKMQRL------------- 106
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTAN 362
+A Q +LK +GL+ G E R +SGGQ++RV L
Sbjct: 107 ---EIAHQ--------MLKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQ 148
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH 390
+L +DE LD+ T Q+ L ++
Sbjct: 149 LLLLDEPFGALDAFTREQMQTLLLKLWQ 176
|
Length = 255 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 61/256 (23%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ LK +S + T LLGP GAGK+TL+L L G L G++ G E+N
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVN----A 71
Query: 245 RTCAYISQH--------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
++ D TV + + F +G+ E+ RR ++A
Sbjct: 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---- 122
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
LK + + D+ +S GQKKRV +
Sbjct: 123 -------------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGV 152
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------ 410
L +V+ +DE LD + + L ++ H T+IVA T+D+
Sbjct: 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVA-------THDVDLAAEW 204
Query: 411 FDDIILLSEGQIVYQG 426
D +I+L EG+++ +G
Sbjct: 205 ADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT + + + R SGG+++R+ +L+ A ++ +DE + GLD T Q+ + +++
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ I L + D I+ L G+I+ QG
Sbjct: 148 KTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 5e-04
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 39/201 (19%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
+SLT +N+S+ + +L +S + G AL+G +G GK+TL+
Sbjct: 336 QVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384
Query: 912 VLAGRKTGGY--IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL-LYSAWLR 968
+L T + +G+I ++G P ++ Y E + V + + L+SA LR
Sbjct: 385 LL----TRAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLFSATLR 431
Query: 969 ----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP---GVSG--LSTEQRKRLTIAV 1019
L++ + + + EV++ V L+ L + GL G G LS +++RL IA
Sbjct: 432 DNLLLAAPNASDEALI---EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488
Query: 1020 ELVANPSIIFMDEPTSGLDAR 1040
L+ + ++ +DEPT GLDA
Sbjct: 489 ALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ ++ V+P + ++GP G+GK+TL LAG+ ++ G + + G +L E P+
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPED 74
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
GE + + GV ++ L L+ G +P +D F
Sbjct: 75 RA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF-- 118
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
L+ + KI L + D ++ + G SGG+KKR +M V +
Sbjct: 119 ------DFQDLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168
Query: 366 MDEISTGLD 374
+DE +GLD
Sbjct: 169 LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFARVSGYCEQND 949
G L+G +G+GK+TL+ L G +G I + I+ + G Q
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
Query: 950 IHSPYV-TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-------KSLNDSMVGL 1001
+ + T+ + + + S+ + + R V M +V L KS +
Sbjct: 93 EYQLFEETIEKDIAFGPINLGLSEEEIENR---VKRAMNIVGLDYEDYKDKSPFE----- 144
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 -----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 27/245 (11%)
Query: 855 LTFDNMSYFV--DMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+ DN+SY P E K L++ S F+ +T ++G +G+GK+T++ +
Sbjct: 7 IILDNVSYTYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQL 56
Query: 913 LAG---RKTGGYIEGDIKI-SGYPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAW 966
G +TG I GD I + K +E + G Q + + E +
Sbjct: 57 TNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP 116
Query: 967 LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026
+ L + +K V EL++L L + V LS Q++R+ +A + + +
Sbjct: 117 VNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGN 170
Query: 1027 IIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
+ +DEPT GLD + + R + + ++ H + DE++++ G+
Sbjct: 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GK 228
Query: 1086 VIYAG 1090
VI G
Sbjct: 229 VISIG 233
|
Length = 289 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-- 241
+L DVS ++ + LLGP G+GK+TL+ +AG D SG I G +L +
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLED 69
Query: 242 ---VPQRTCAYISQHDLHHGEMTVRE--TLDFSG 270
+R + Q +TV E L SG
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 56/195 (28%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S V P + +++GP GAGKTT+M + GK D G + + G +L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL-------- 66
Query: 247 CAYISQHDL-HHG------------EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
+ +H + G +TV E L+ L + + A L R
Sbjct: 67 -TGLPEHQIARAGIGRKFQKPTVFENLTVFENLE-----LALPRDKSVFASLFFRLSAEE 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I+ VL+ +GL AD + G +S GQK+ +
Sbjct: 121 ---KDRIEE------------------VLETIGLADEADRLAGL-----LSHGQKQWLEI 154
Query: 354 GEMLVGTANVLYMDE 368
G +L+ +L +DE
Sbjct: 155 GMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 91/273 (33%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +S + + ++G GAGK+T++ L R SG IT G ++ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDV 330
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
VPQ T + T+ + + T E+ A +
Sbjct: 331 TQQSLRRAIGIVPQDTVLFND---------TIAYNIKYGRP---DATAEEVGAAAEAAQI 378
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
I+ PE G D T VG+ RG +SGG+K
Sbjct: 379 HDFIQSLPE--------------------------GYD----TGVGE---RGLKLSGGEK 405
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ---------MVHILDVTMIVA 399
+RV ++ +L +DE ++ LD+ T I L++ + H L T+I A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS-TIIDA 464
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
D+II+L G+IV +G + +L
Sbjct: 465 ------------DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +++ +L +++ +DE + GLD + Q+ + LK + + I+ +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL-QTDENKTIILVSH 204
Query: 403 PAPETYDLFDDIILLSEGQIVYQG-PRD 429
E D++I++ EG IV Q P++
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL ++S V+ + GP G GK+TL+ +A + SG + + G +++ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ +Y +Q G+ TV + L F +++ +PD A
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFP---------WQIRNR----------RPDR--AA 112
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +A S++T + +SGG+K+R+ L
Sbjct: 113 ALDLLARFALPDSILTKNI-------------------TELSGGEKQRIALIRNLQFMPK 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DEI++ LD S I + + + V +V ++ + D +I L G
Sbjct: 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
V+ L VS V+ + LLG GAGK+TLM L+G D SG+I G E++
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +LK ++ + P + L+GP G+GK+T+ L G++ G L ++
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQY- 548
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA-GIKPDPEID 301
Y+ + G+ E + FSG S RE A G+ P D
Sbjct: 549 ---DHHYLHRQVALVGQ----EPVLFSG---------------SVRENIAYGLTDTP--D 584
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ A A A + D+ I+ DT VG E +SGGQK+R+ LV
Sbjct: 585 EEIMAAAKA----ANAHDF---IMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKP 636
Query: 362 NVLYMDEISTGLD--SSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
VL +DE ++ LD Q + +L + ++ ++ A D I++L +
Sbjct: 637 RVLILDEATSALDAECEQLLQESRSRASRTVLL-IAHRLSTVERA-------DQILVLKK 688
Query: 420 GQIVYQGPRDNVLE 433
G +V G ++E
Sbjct: 689 GSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEFVP 243
+L +++ V+P L+ G GAGKT+L+ ALAG L SG+I+ F+P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG-----LWPWGSGRISMPADSALLFLP 462
Query: 244 QRTCAYISQ 252
QR Y+ Q
Sbjct: 463 QRP--YLPQ 469
|
Length = 604 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKNQETFARVS 942
VS G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Q+ P++TV +++ + D + V E++ L + + P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 8e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R+ L+ +L +DE ++ LD T I + L+ + T+IV
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVI--- 151
Query: 403 PA--PETYDLFDDIILLSEGQ 421
A T D II+L +G+
Sbjct: 152 -AHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 63/262 (24%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+LLGP GAGK++L+ L ++ SG + G+ + S+
Sbjct: 32 VLLGPSGAGKSSLLRVLNLL---EMPRSGTLNIAGNHFD----------FSKT------P 72
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+ + D V +Y L L+ +E I+A + + ++ + +
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENL--------IEAPCRVLGLSKDQALARAEK 124
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+LK L L D +SGGQ++RV L+ VL DE + LD T Q
Sbjct: 125 LLKRLRL-----KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 381 ICKFLKQM----------VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
I +K++ H ++V A ++ + G IV QG
Sbjct: 180 IVSIIKELAETGITQVIVTHEVEVARKTA------------SRVVYMENGHIVEQG---- 223
Query: 431 VLEFFEHMGFKCPERKGVADFL 452
+ F P+ + ++L
Sbjct: 224 -----DASCFTEPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYC 945
G G + ++G +G GKTT + +LAG K E D+K+S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDG-- 416
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
TV + L + S + F E+++ + L+ L + V
Sbjct: 417 ----------TVEDLL----RSAIRSAFGSSY---FKTEIVKPLNLEDLLERPV-----D 454
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 876 GEDRLQL-------LHSVSGVFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYIEGDI 926
GE RL++ ++ VS R G + + G+ GAG+T LM VL A +T GY+ D
Sbjct: 254 GEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSD---VDTKKRKM 980
Q+ A Y ++ V +V E++ +A S + +
Sbjct: 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ 373
Query: 981 FVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
V + + L +K+ + + +GL LS ++++ IA L+ P ++ +DEPT G+D
Sbjct: 374 AVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
Query: 1040 RA 1041
A
Sbjct: 429 GA 430
|
Length = 501 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 30/162 (18%)
Query: 893 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGYPKNQETFARVSG 943
G +TAL+G SG GK+T++ D++ G G + +G E R+
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 944 YCEQNDIHSPY-VTVYESLLYSAWLR-----LSSDVDTKKRKMFV-DEVMELVELKSLND 996
+Q + P+ ++YE++ + A + + V+ RK V DE + LN+
Sbjct: 99 VFQQPN---PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-----KLNE 150
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
S G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 151 S-----GYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQ 935
++ + +S R G A++G +G+GK+TL +LAG IE G++ I +P +
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGELLIDDHPLHF 79
Query: 936 ETFARVSGYCE---QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
++ S Q+ S S + LRL++D++ ++R+ + E + V L
Sbjct: 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL- 138
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L D P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 139 -LPDHASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 53/255 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
R+++DVS V + LLGP GAGKTT + G + +D +G I +++ +P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDIS-LLPL 72
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDP 298
+R Y+ Q E ++ L + V R +L AE +RE +A
Sbjct: 73 HARARRGIGYLPQ------EASIFRRLSVYDNLMAVLQIRDDLSAE--QREDRA------ 118
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ M+ + S+ + +SGG+++RV L
Sbjct: 119 --NELMEEFHIEHLRDSM-----------------------GQSLSGGERRRVEIARALA 153
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL-QPAPETYDLFDDIILL 417
+ +DE G+D + I + ++ H+ D + V + ET + + ++
Sbjct: 154 ANPKFILLDEPFAGVDPISVIDIKRIIE---HLRDSGLGVLITDHNVRETLAVCERAYIV 210
Query: 418 SEGQIVYQGPRDNVL 432
S+G ++ G +L
Sbjct: 211 SQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-04
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
+L V V+ + L+GP GAGKTTL+ A+ G L +G + G L+
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALS 71
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q E VR+ ++ GR R++ E R
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRA----------A 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ M+ VA VT +SGG+++RV L
Sbjct: 120 VERAMERTGVAQFADRPVTS-----------------------LSGGERQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
VL +DE + LD + + + ++++V T + A+ +DL D+
Sbjct: 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAI-------HDLDLAARYCDE 208
Query: 414 IILLSEGQIVYQGPRDNVL 432
++LL++G++ GP +VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 29/224 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +S G ++G +GAGK+TL+ ++AG + T G +K++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
V+ E P +T E++ + + + ++ VDE++E EL D
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK---VDEIIEFAELGDFID---- 142
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
P V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 143 QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104
H I + D + L+ G++ G ++I +E
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEH-GQIRMEG----SPEEVIPAYE 239
|
Length = 249 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-04
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 27/161 (16%)
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ T L + + D + E + ++ L+ + + E+D E+ LK+
Sbjct: 168 LGPPGTGKTLAARTVGKSGADLGALAKEAALR--ELRRAIDLVGEYIGVTEDDFEEALKK 225
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+ + V E V D G L A+ L +
Sbjct: 226 VL-PSRGVLFEDED---------VTLDDIGGLEEAKEELKEAIETP-----LKR---PEL 267
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
L+ G+ LL GPPG GKT L A+A +
Sbjct: 268 FRKLGLRPPKGV-------LLYGPPGTGKTLLAKAVALESR 301
|
Length = 494 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 9e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 176 LVPSKKRSV-----RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LV + SV R+L DVS +KP ++ LLGP GAGK+TL+ + G + D G
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGV 60
Query: 231 ITYCGHELNEFVPQR 245
I G +VPQ+
Sbjct: 61 IKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 78/273 (28%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT-------LMLALAGKL---GKDL---- 225
KKR +++ DVS V + LLGP GAGKTT L+ +GK+ +D+
Sbjct: 15 KKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP 72
Query: 226 ---RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
RA I Y +PQ + ++TV + ++
Sbjct: 73 MHKRARLGIGY--------LPQEASIF--------RKLTVEDN---------------IM 101
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
A L REK D + E D +L+ + D+
Sbjct: 102 AVLEIREK------DLKK-----------AERKEELDALLEEFHITHLRDSKAY-----S 139
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL- 401
+SGG+++RV L + +DE G+D I ++++ L I L+
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLIT 195
Query: 402 -QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
ET D+ D ++S+G+++ +G + ++
Sbjct: 196 DHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 57/274 (20%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
M ++ + + + + + L+D S V + L+G G+GK+TL AL G +
Sbjct: 1 MMQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV--- 57
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG----VGTRYE 280
ASGKI+ G + + + AY+ Q E +D+S L + RY
Sbjct: 58 RLASGKISILGQPTRQALQKNLVAYVPQ----------SEEVDWSFPVLVEDVVMMGRYG 107
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ L R +K+ D +I VT + ++ ++ +G+
Sbjct: 108 HMGWLRRAKKR-----DRQI----------------VTAALARVDMVEF-RHRQIGE--- 142
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
+SGGQKKRV + V+ +DE TG+D T +I L+++ TM+V+
Sbjct: 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVS- 198
Query: 401 LQPAPETYDL-----FDDIILLSEGQIVYQGPRD 429
T++L F D ++ +G ++ GP +
Sbjct: 199 ------THNLGSVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 0.001
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +RV +L VL +DE + GLD ++ + + + ++V L
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNV---LEFFEHMGFKCPERKGVADFLQE 454
+ D D + LL +G I+ G +V ++F + P+ AD LQ+
Sbjct: 205 --DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ DE ++ LD +I K + + T+I
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISI--- 199
Query: 403 PAPETYD-----LFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
T+D L D +I+ SEG+++ QG +L E E P ++ L+
Sbjct: 200 ----THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKG 255
Query: 455 VTSKKDQEQ 463
+ ++E+
Sbjct: 256 IDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHEL-----N 239
+KDVS + +T ++GP G GK+T++ ++ L R +GKI ++ +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M++ + V Y+L ++R E D
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNGRVNRSEA------DEI 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+++ +K VA+ D D + + M +SGGQ++R+ +
Sbjct: 125 VESSLKRVAL-----------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
V+ MDE ++ LD +T +I + ++++ + ++ +Q A D
Sbjct: 166 KPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDY---TAFFYM 222
Query: 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G +V G + F PE+K D++
Sbjct: 223 GDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNEFVPQ 244
L D++ + +++T L+GP G GK+T + L L +++ G++ G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I D+ E+ R + F + Y+ +A R GIK E+D
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH---GIKDKKELD--- 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTA 361
K V A ++ +L + V D++++ +SGGQ++R+ +
Sbjct: 122 KIVEWALKKAALWDE---------------VKDDLKKSALKLSGGQQQRLCIARTIAVKP 166
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDIIL 416
+V+ MDE ++ LD +T +I + ++ + ++ +Q A D L D+I
Sbjct: 167 DVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226
Query: 417 LSEGQIVYQGPRD 429
++ + ++ P+
Sbjct: 227 FNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 55/259 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
ILK+V+ + + +T L+GP G GK+T + L R + I HE +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-------RMNDLIPGFRHEGH------ 64
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
Y+ D++ + V EL ++ KP+P +
Sbjct: 65 --IYLDGVDIYDPAVDV--------------------VELRKKVGMVFQKPNPFPKSIFD 102
Query: 306 AVA----VAGQETSLVTDYVLKILGLDICADTM---VGDEMRR---GISGGQKKRVTTGE 355
VA + G++ D++ + + + A + V D++ + G+SGGQ++R+
Sbjct: 103 NVAYGLRIHGEDDE---DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET--YDLFDD 413
+ + V+ MDE + LD +T +I + ++ + ++ +Q A Y F
Sbjct: 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSF-- 217
Query: 414 IILLSEGQIVYQGPRDNVL 432
G+I+ G D +
Sbjct: 218 ---FLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 1043
E + + L+ ++ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 1044 IVMRTVRNTVD------TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088
+++ + TV+ T + LL +R R I
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKD-----LGPALLRRRFDRRIV 143
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 973 VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+ ++ K V+E +ELV ++ + P + LS Q++R+ IA + P II +DE
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKERE---P--ARLSGGQKQRVAIAGAVAMRPKIIILDE 166
Query: 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
TS LD +++T++ D TV+ H +D D +L++K G
Sbjct: 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 26/169 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+ ++S RPG L+G SG+GK+T L+ ++ + G+I G P +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 939 ARVSGYCEQ--------NDIHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELV 989
++ + N +P + V + + LR+ + +R+ V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L ++ P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 50/258 (19%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
R L +S + ++G GAGK+TL+ A+AG L SG+I G +
Sbjct: 13 KGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVD 69
Query: 238 LNEF-VPQR--TCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
+ + V +R A + Q L E+T+ E L LAE R K+
Sbjct: 70 VTKKSVAKRANLLARVFQDPLAGTAPELTIEENL--------------ALAE--SRGKKR 113
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
G+ + + ++ L + + + D + +SGGQ++ ++
Sbjct: 114 GLSS--------------ALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALS 158
Query: 353 TGEMLVGTAN---VLYMDEISTGLDSSTTFQICKFLKQMV--HILDVTMIVALLQPAPET 407
+L+ T + +L +DE + LD T + + ++V H L M+ ++ A
Sbjct: 159 ---LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA--- 212
Query: 408 YDLFDDIILLSEGQIVYQ 425
D + +I+L G+IV
Sbjct: 213 LDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 59/268 (22%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFVPQRTCAYIS 251
+ +T L+GP G GK+T + L ++ D+ + +G+I + G + Y S
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGS 76
Query: 252 QHDL----HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
+ DL M ++ F + + ++ K AG+K ID +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP---------FSVYDNVAYGLKIAGVKDKELIDQRV--- 124
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTANVL 364
E SL + K D + R SGGQ++R+ L V+
Sbjct: 125 -----EESLKQAAIWK----------ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVV 169
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++ LD ++ +I + L ++ H M+ LQ A + D L G ++
Sbjct: 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIE 226
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFL 452
GP + + F P+++ +D+L
Sbjct: 227 AGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 46/238 (19%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +S + +++T ++GP G GK+T +
Sbjct: 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI---------------------------- 50
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI---KPDPE 299
+T IS+ + G + V +DF G+ + Y+ ++R +Q G+ +P+P
Sbjct: 51 --KTLNRISELE---GPVKVEGVVDFFGQNI-----YDPRININRLRRQIGMVFQRPNPF 100
Query: 300 IDAFMKAVA----VAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVT 352
+ + VA ++ + D +++ V D++ + G+SGGQ++R+
Sbjct: 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
L VL MDE + LD T ++ + + + L + ++ +Q A D
Sbjct: 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
++LK+++ ++T ++GP G GK+TL+ AL + +N+ V
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRAL------------------NRMNDIV-- 57
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ A + L E LD + L +R +P+P +
Sbjct: 58 -SGARLEGAVLLDNENIYSPNLD--------------VVNLRKRVGMVFQQPNPFPKSIF 102
Query: 305 KAVAVAGQ-----ETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEML 357
VA + S + + V K L D + + + G +SGGQ++R+ +L
Sbjct: 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFD 412
V+ MDE + LD +T +I + ++++ + ++ +Q A D L
Sbjct: 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
D++ ++ PRD E
Sbjct: 223 DLVEYGRTGEIFSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGG--YIEGDIKISGY 931
+LH ++ + +TA +G SG GK+T + D++ G G Y G S
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155
Query: 932 PKNQETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ E R+ ++ +P+ +++++++ Y R + D K + V++ ++
Sbjct: 156 ISSLELRTRIGMVFQKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAA 210
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L + G + LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 211 LWDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 33/163 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
++L VS +PG + L+G +GAGK+TL+ V+ G G I+ + K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 939 ARVSGYCEQN---DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R+ GY Q D P L + +LRL +K + ++ V+ L
Sbjct: 68 -RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLI 114
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 115 DA----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 40/219 (18%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------- 935
L +V+ +PG + + G +G+GK+TL+ ++ ++ EGDI+ P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
A VS +P+ L+S +++++ + E+ + L S++
Sbjct: 389 SRLAVVS--------QTPF-------LFSD--TVANNIALGRPDATQQEIEHVARLASVH 431
Query: 996 DSMVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
D ++ LP GV LS Q++R++IA L+ N I+ +D+ S +D R +
Sbjct: 432 DDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ +R + GRTV+ + H+ S + EA E+L+++ G
Sbjct: 491 LHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 26/175 (14%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQET-- 937
Q++ + G L+G SG GK+TL+ ++AG + I G+I I G N+
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74
Query: 938 ---FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
A V QN P+++V E++ Y +R + ++R V E ++EL+ L
Sbjct: 75 DRDIAMVF----QNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILELEPL 127
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 1047
D P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 128 LDRK---P--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++S PG L+G +G+GK+TL+ EGDI+I G N
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPL--- 72
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG- 1000
Q + V + ++S R + D K + +V E V LKS+ + G
Sbjct: 73 -----QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQ 127
Query: 1001 -----LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+ G LS ++ + +A +++ I+ +DEP++ LD ++ +T++
Sbjct: 128 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD 187
Query: 1056 GRTVVC 1061
++
Sbjct: 188 CTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 31/133 (23%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM-----------VHI 391
+SGGQK+RV L VL DE ++ LD +TT I + LK + H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451
+DV + D + ++ G++V QG V E F H P+ +F
Sbjct: 201 MDVVKRIC------------DRVAVIDAGRLVEQGT---VSEVFSH-----PKHPLTREF 240
Query: 452 LQEVTSKKDQEQY 464
+Q E Y
Sbjct: 241 IQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G + L++VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD 68
Query: 928 ISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLS--SDVDTKKRKMFV 982
++ + + AR G Q N + S TV++++ L L+ + K R V
Sbjct: 69 LTALSEKELRKARRQIGMIFQHFNLLSSR--TVFDNVALP--LELAGTPKAEIKAR---V 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
E++ELV L D P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 122 TELLELVGLSDKADRY---P--AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
+LKD+S + P L+G GAGK+TL+ +AG+L D G +T
Sbjct: 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YIEGDIKISGY 931
E ++ L VS G A++G SG GK+TL + + TGG Y +G +
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKA 82
Query: 932 PKNQETFAR-----VSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ R V QN S P V + L L +++ + +R+
Sbjct: 83 DPEAQKLLRQKIQIVF----QNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALA 136
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDE 1032
+M V GL E QR+R+ IA L+ +P ++ DE
Sbjct: 137 MMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE 180
Query: 1033 PTSGLD 1038
P S LD
Sbjct: 181 PVSALD 186
|
Length = 327 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYIE---GDIKISGYPKNQETF 938
H+ S G + LMG+SG+GK+TL+ + G G + GD + + T
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 939 -----ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
RVS +Q + P+ TV E++ + L + ++RK VDE +ELV L
Sbjct: 101 RRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAERRKR-VDEQLELVGLAQ 156
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D G LS ++R+ +A I+ MDEP S LD
Sbjct: 157 WADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L++VS ++P ++GP G+GK+TL + G L SG++ G +++++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 245 --RTCAYISQHD 254
Y+ Q D
Sbjct: 74 LGDHVGYLPQDD 85
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTL--MLALAGKLGKDLRASGKITYCGHELNE 240
LKD++ + +++T L+GP G GK+TL L L R G++ G + +
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
|
Length = 253 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
L +LGL+ + D + +SGG+KKRV ++ VL +DE + GLD
Sbjct: 119 SSALHMLGLE-----ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 379 FQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILLSEGQIVYQG 426
++ FL + +T+I + L PE + D I ++ +G+IV G
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPE---MADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+E +LV D + K+ + D + + + +SGGQ++R+ L +L +DE ++
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTS 171
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDIILLSEGQIVYQG 426
LD ++ I + LK++ H L + M+ +Q D ++I E + ++
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
Query: 427 PRD 429
P+
Sbjct: 232 PKQ 234
|
Length = 246 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403
SGGQ++RV L ++L DE +T LD + QI LK++ L + ++
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI---- 214
Query: 404 APETYDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+DL D + ++ G+IV G + + +H
Sbjct: 215 ---THDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQH 251
|
Length = 534 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 28/225 (12%), Positives = 71/225 (31%), Gaps = 10/225 (4%)
Query: 523 LFRACFAREWLLMKRNSFVY-IFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALF 581
R + L+ + I + + + + F
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGL-REGLSGRLYHWSNPSLDYLAFIVPG 93
Query: 582 FSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFY---PSWAFALPIWLLRIPISILDSTIW 638
L++++F+G + L + + L L + + ++ L + +
Sbjct: 94 VILMSVLFSGIFS-FSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 639 VALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAA--VGRTEVISNTLGTFILLI 696
+ + + +G S L + ++ L+ + ++ +G ++L
Sbjct: 153 LLVIAFLLGVPFLGSLLL--LLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210
Query: 697 MMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
+ L G + + +L+ YI+P+ Y +L G R D
Sbjct: 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRND 255
|
Length = 286 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 46/246 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
I ++S V ++T ++GP G GKTTL+ + G++ D G+I + G E +P
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDG----ENIPA- 73
Query: 246 TCAYISQHDLHHGEMTVRETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+S+ L+ TVR+ + SG ++ +A R Q P P + +
Sbjct: 74 ----MSRSRLY----TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL---PAPLLHS 122
Query: 303 --FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
MK AV GL A M + +SGG +R +
Sbjct: 123 TVMMKLEAV----------------GLRGAAKLMPSE-----LSGGMARRAALARAIALE 161
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+++ DE G D T + K + ++ L VT +V + PE + D ++++
Sbjct: 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADK 220
Query: 421 QIVYQG 426
+IV G
Sbjct: 221 KIVAHG 226
|
Length = 269 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 17/231 (7%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFA 939
L +++ V + G ++G +G+GK+TL L G + G + I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 940 RVSGYCEQNDIHSPYV--TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
++ G QN + +V TV E L + ++ +KR VD L E+ L
Sbjct: 77 KLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VD--RALAEIG-LEKY 129
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
P LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 130 RHRSP--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIP 1108
T+V H +++ D ++++ RG V+ P S ++ ++ P
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPP 236
|
Length = 274 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.004
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILD 393
SGG K+R+ + L+ +L +DE ++GLD + + + L+++ HIL+
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQI 422
E L D + +L+ G+I
Sbjct: 157 ------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K IL D++ ++ +M ++G G+GK+TL L + G L K SG++ G E
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTL-LNIIGLLEKF--DSGQVYLNGQETP 63
Query: 240 EFVPQR-------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++ Y+ Q+ TV E LD LG+ +LS++EK+
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLD-----LGL-----KYKKLSKKEKRE 113
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
K L+ +GL++ + + +SGG+++RV
Sbjct: 114 KKK------------------------EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
++ ++ DE + LD ++ L ++
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-FVPQRTCAYISQ 252
+K M LLGP G GKTT++ +AG L K G+I G ++ + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
M++ E + + + LGV E +R K+A ++ V +AG
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-----------LELVDLAGF 129
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E V D+ ISGGQ++RV L+ VL DE +
Sbjct: 130 EDRYV-------------------DQ----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 373 LDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
LD++ + + ++++ ++T + V Q E + + D +I++++G+I+ G
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 50/224 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S + +++T L+GP G GK+T LR C + +N+ +P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTF-----------LR-------CLNRMNDLIP--- 60
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
++ + GE+ + + + + V EL RR KP+P + +
Sbjct: 61 ---GARVE---GEILL-DGENIYDPHVDV-------VELRRRVGMVFQKPNPFPKSIFEN 106
Query: 307 VA----VAG-QETSLVTDYVLKILG----LDICADTMVGDEMRRGISGGQKKRVTTGEML 357
VA V G ++ + + + V + L D D + E G+SGGQ++R+ L
Sbjct: 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQRLCIARAL 164
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
VL MDE ++ LD T +I ++++H L + ++
Sbjct: 165 AVEPEVLLMDEPASALDPIATQKI----EELIHELKARYTIIIV 204
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 51/233 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP G GKTT++ +AG D SG+I G ++ R + Q M
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM 101
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F R AE++ R +A
Sbjct: 102 TVFENVAFGLRMQKTPA-----AEITPRVMEA---------------------------- 128
Query: 321 VLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
L+++ L+ A R+ +SGGQ++RV +V VL +DE + LD
Sbjct: 129 -LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 379 FQICKFLKQMVHILDVTMI-VALLQPAPETYDLFDDIILLSEGQIVYQG-PRD 429
Q+ LK + L +T + V Q E + D I+++ +G+I G PR+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQ--EEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 324 ILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
IL L DT VG+ RG+ SGGQK+R++ L+ A +L +D+ + +D T QI
Sbjct: 434 ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 382 CKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
L+Q I+ + AL + +I+++ G I +G D + +
Sbjct: 491 LHNLRQWGEGRTVIISAHRLSALTEA--------SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE--T 937
L+ V+ G A++G +G+GK+TL+ L G + T G + G+ I+ KN++
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 938 FARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL----- 991
+ G Q H + TV + + + S+ D K++ E++ELV L
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELL 139
Query: 992 -KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+S + LS Q +R+ IA L P ++ +DEPT+GLD +
Sbjct: 140 ARSPFE----------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 34/162 (20%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVS 942
+TA +G SG GK+T++ D++ G + +EG + G Y + + R
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFR----VEGKVTFHGKNLYAPDVDPVEVRRRI 93
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLR-LSSDVD-----TKKRKMFVDEVMELVELKSLND 996
G Q P ++Y+++ Y A + D+D + ++ DEV + L
Sbjct: 94 GMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQ 147
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
S G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 148 S-----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 66/242 (27%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNEFVPQ 244
+K+V + +++T +GP G GK+T++ L R GK+T+ G L
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL------ 79
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y D E+ RR KP+P +
Sbjct: 80 ----YAPDVD---------------------------PVEVRRRIGMVFQKPNPFPKSIY 108
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG----------------ISGGQK 348
+A Y +I G D +V +R+ +SGGQ+
Sbjct: 109 DNIA-----------YGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408
+R+ + V+ MDE + LD +T +I + + ++ + ++ +Q A
Sbjct: 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS 217
Query: 409 DL 410
D+
Sbjct: 218 DM 219
|
Length = 264 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1119 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-192 Score=1738.31 Aligned_cols=1009 Identities=56% Similarity=0.946 Sum_probs=940.4
Q ss_pred cCchhhhHHHHHhhCCChhhhhhccccccccCCccceeeeecCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcC
Q 001228 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (1119)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (1119)
+||||+++|||+|||||++| +++.+.. + .++|+.++++.+++.++++..+..++|+|+++.++++|++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~-~-----~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF-E-----SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc-c-----CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 45999999999999999999 5554321 1 259999999999999999999999999999999999999998
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCH
Q 001228 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (1119)
Q Consensus 131 ~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 210 (1119)
++|.++++++++.++++++.+ ||+.|...+.++..+...+.. ++...+||+|+||.++||+|++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998876 999999999999887766654 5566789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHH
Q 001228 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (1119)
Q Consensus 211 STLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 290 (1119)
||||++|+|.++..+...|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ ++.|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999998877889999999999999999999999999999999999999999999999999887 5566655
Q ss_pred hcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCC
Q 001228 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (1119)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPt 370 (1119)
.. ..+|++++++||++|+||+|||+++||+||||||||+||++++++++++||||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 32 2589999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhH
Q 001228 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (1119)
Q Consensus 371 sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad 450 (1119)
+|||++|+++|++.||+++|..+.|++++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHH
Q 001228 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1119)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1119)
|++++++++++.++|..+..|+.+.+++||.+.|.+++.++++..+++.++++++.++.++..++|..+.|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Q 001228 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (1119)
Q Consensus 531 ~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~ 610 (1119)
+|++++||.+++++++++.+++++++|++|+++.+ .+..++..+.|++||++++.+|++++++.++++++|||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5667788999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 001228 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (1119)
Q Consensus 611 ~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~ 690 (1119)
..||++|+++++.+++++|+.++++++|.+|+||++|+.+++++||.+|++++++++++.++|++++++++++.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCC------------cccchhhHH
Q 001228 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI------------NQPTIGKVL 758 (1119)
Q Consensus 691 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~------------~~~~~G~~~ 758 (1119)
++.++++.+++||+|+..+||+||+|++|++|++|+++++++|||++++|+|.+.+|.+ ...+.|..+
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999998433321 235678889
Q ss_pred hhhcCcc-----ccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc-ccccchhhhhcccc
Q 001228 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG-HEAEGMQMAVRSSS 832 (1119)
Q Consensus 759 l~~~~~~-----~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 832 (1119)
+..+++. +..+|+|+++|+++||.++|++++++++.|+++..+....+..+......... .... .+..
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~- 760 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSS-----SEIE- 760 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhcccc-----cccc-
Confidence 9998888 88899999999999999999999999999999999888877766554332211 0000 0000
Q ss_pred cccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHh
Q 001228 833 KTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912 (1119)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~ 912 (1119)
......+.+.+++++|++|..++++|+.|.+++|.+++..| +++++|+|||+.++||.++||||+||||||||||+
T Consensus 761 -~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdv 836 (1391)
T KOG0065|consen 761 -KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDV 836 (1391)
T ss_pred -ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHH
Confidence 00011111356789999999999999999999999988777 67789999999999999999999999999999999
Q ss_pred HcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC
Q 001228 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992 (1119)
Q Consensus 913 L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 992 (1119)
|+||+++|.++|+|.|+|+|++++.++|.+|||+|+|.|.+.+||+|.|.|+|++|++.+++.+++.++++++++.++|+
T Consensus 837 LA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~ 916 (1391)
T KOG0065|consen 837 LAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK 916 (1391)
T ss_pred HhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 993 ~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p-~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
+++|..+|.|| ++||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||||.+++
T Consensus 917 ~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~if 995 (1391)
T KOG0065|consen 917 EYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIF 995 (1391)
T ss_pred hhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHH
Confidence 99999999999 899999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhhceEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCCC
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVD 1116 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~~ 1116 (1119)
+.||++++|++||++||.||+|++++++++||| +++|+++++++
T Consensus 996 e~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFe-s~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 996 EAFDELLLLKRGGQTVYFGPLGENSSKLIEYFE-SIGGVKCISDE 1039 (1391)
T ss_pred HHHhHHHHHhcCCeEEEecCcccccHHHHHHHH-hcCCccCCCCC
Confidence 999999999999999999999999999999999 99999977765
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-179 Score=1741.50 Aligned_cols=1093 Identities=63% Similarity=1.046 Sum_probs=961.5
Q ss_pred cccccccccccccCcccccccccccccccccccccCCCcccccC--------CccCchhhhHHHHHhhCCChhhhhhccc
Q 001228 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRS--------ERQDDEEELRWAAIERLPTYDRLKKGML 76 (1119)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (1119)
.|++|+||+| +++++ +.|.. +++|++. ..|||||+|+|||+||||||+|+|++++
T Consensus 4 ~~~~~~~~~~----------~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (1470)
T PLN03140 4 RGGSMRRSIS----------RSVSR------SSRNM-EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIM 66 (1470)
T ss_pred CcccHHHHHH----------HHhhh------hhhhh-hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhh
Confidence 5667999998 33322 44433 4566331 1278999999999999999999999999
Q ss_pred cccc-cCCccc---eeeeecCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcCCCCCccEEEEeeeEEEEEEecC
Q 001228 77 NQVL-EDGKVV---KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152 (1119)
Q Consensus 77 ~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~v~~~~~~~ 152 (1119)
.... ++|... ..++|+++|+.++++.+++++++++++|+++|++++++|.+++|+++|++||+|+||+|+++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~ 146 (1470)
T PLN03140 67 KSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIG 146 (1470)
T ss_pred hcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCC
Confidence 6421 111111 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 001228 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (1119)
Q Consensus 153 ~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~ 232 (1119)
++.+||++|.+.+.++.+....+...+++.+++||+||||.++||++++|+|||||||||||++|+|+++++.+++|+|.
T Consensus 147 ~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~ 226 (1470)
T PLN03140 147 SRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT 226 (1470)
T ss_pred cccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 99999999999999887766555433445568899999999999999999999999999999999999988777899999
Q ss_pred ECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhcc
Q 001228 233 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312 (1119)
Q Consensus 233 ~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1119)
|||+++++...++.++||+|+|.|++++||+|||.|+++|++.+.++++..++++++++.++.|+.+++.+|++...++.
T Consensus 227 ~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~ 306 (1470)
T PLN03140 227 YNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGV 306 (1470)
T ss_pred ECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcc
Confidence 99999887766788999999999999999999999999998877766666677788888888888899999999888888
Q ss_pred chhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 313 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
+.+..++++++.+||++|+||.||+++.|||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..
T Consensus 307 ~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~ 386 (1470)
T PLN03140 307 KSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT 386 (1470)
T ss_pred hhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCC
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 472 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~ 472 (1119)
++|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|+
T Consensus 387 g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~ 466 (1470)
T PLN03140 387 EATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPY 466 (1470)
T ss_pred CCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999988888887767788
Q ss_pred CCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 001228 473 RYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 552 (1119)
Q Consensus 473 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ 552 (1119)
++.++++|+++|++++.++++.+++..+.++++.++.....++|..++|+|++.|++|+|++++||+.++++|+++.+++
T Consensus 467 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ 546 (1470)
T PLN03140 467 RYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIV 546 (1470)
T ss_pred ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88899999999999999988888877776666556666666779999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHH
Q 001228 553 SLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632 (1119)
Q Consensus 553 ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~ 632 (1119)
|+++|++||+++++..+..+++.+.|++||++++.+|++++++.+++.+||||+|||+.+||++|+|+++.++.++|+.+
T Consensus 547 ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~ 626 (1470)
T PLN03140 547 AAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISI 626 (1470)
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999877655566788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 001228 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEP 712 (1119)
Q Consensus 633 ~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~ 712 (1119)
+++++|++++|||+|+.+++++||.++++++++++++.++|++++++++++.+|+++++++++++++|+||+++.++||+
T Consensus 627 i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~ 706 (1470)
T PLN03140 627 IESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN 706 (1470)
T ss_pred HHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 001228 713 FLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAA 792 (1119)
Q Consensus 713 ~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~ 792 (1119)
||+|++|+||++|+++++++|||.+.+|.+..+.+ ...+.|..+|+.+++..++.|+|+++++|++|+++|+++++++
T Consensus 707 w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~ 784 (1470)
T PLN03140 707 WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLA 784 (1470)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998886432221 2457899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcceeeccchhhhcc--cc----c-ccchh---hhh--cc-c-------ccc-cccccccccCccccccc
Q 001228 793 LAYLNPIGDSNSTVIEEDGEKQRAS--GH----E-AEGMQ---MAV--RS-S-------SKT-VGAAQNVTNRGMILPFQ 851 (1119)
Q Consensus 793 l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~~---~~~--~~-~-------~~~-~~~~~~~~~~~~~~~~~ 851 (1119)
++++++..........+........ .. . .+... ... +. . ... .........+++++|+.
T Consensus 785 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1470)
T PLN03140 785 LTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFT 864 (1470)
T ss_pred HHhcCccCCCCccccccchhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9999876554433221111100000 00 0 00000 000 00 0 000 00001123456778999
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
|.+++|+|++|+++++.++++.+..++++++|+|||++++||+++||+|||||||||||++|+|+.++|..+|+|.++|.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 99999999999999988777777777777899999999999999999999999999999999999877778999999998
Q ss_pred cCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
+.....+++.+|||+|++.+++.+||+|++.|++.++.+.....+++.+.++++++.++|.++.|+.+|.+++++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87655667789999999999999999999999988776555555566678999999999999999999888778999999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+||||++|||+.++++.||++++|.+||+++|.|+
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999988999999999998778899999999988899999999
Q ss_pred CCCChHHHHHHhhhhcCCCccCCCCC
Q 001228 1092 LGHESHKLIEYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1092 ~~~~~~~l~~~f~~~i~g~~~~~~~~ 1117 (1119)
.+.+++++++||+ +++|+|+||++.
T Consensus 1105 ~~~~~~~~~~yF~-~~~g~~~~p~~~ 1129 (1470)
T PLN03140 1105 LGRNSHKIIEYFE-AIPGVPKIKEKY 1129 (1470)
T ss_pred cccccccHHHHHH-hcCCCCCCCCCC
Confidence 9999999999999 899999998764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-137 Score=1357.59 Aligned_cols=959 Identities=33% Similarity=0.545 Sum_probs=778.0
Q ss_pred hhcHHHHHHHHHHHhhhcCCCCC--ccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeec
Q 001228 112 EEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKD 189 (1119)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 189 (1119)
+.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+......... ...+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKL-KKFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHh-cccCCCCcceeeeC
Confidence 36778888776666666665555 9999999999999 44566679999999888766433221 11233456789999
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCCHHHHH
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
||+.++|||+++|+|||||||||||++|+|+.++. ...+|+|.|||+++++.. .++.++||+|+|.|++.+||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 99999999999999999999999999999997432 125999999999875432 345699999999999999999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.|+++++.+..+.. ...+.++ .+...+.+++.+||++++||.||++..||||||
T Consensus 160 ~f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 99988764321100 0000000 012346789999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999998678999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcc--
Q 001228 427 PRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS-- 504 (1119)
Q Consensus 427 ~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-- 504 (1119)
+++++.+||+++||+||++.|+|||+++++++.++ +++.. .+.....+.++|++.|+++..++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987643 22211 111123578899999999987776666544321110
Q ss_pred -------------cCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 001228 505 -------------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMN 571 (1119)
Q Consensus 505 -------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~ 571 (1119)
...+......++..++|+|++.|++|+|+.++||+..++.++++.+++|+++|++||+.+.+. .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---S 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---h
Confidence 000111233467889999999999999999999999999999999999999999999987543 4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcch
Q 001228 572 GGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (1119)
Q Consensus 572 ~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~ 651 (1119)
+.+.+.|++||++++.+|.++.++..++.+|+||+|||.+++|++++|+++..+.++|+.++.+++|++++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 56778999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHH
Q 001228 652 ASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (1119)
Q Consensus 652 ~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~ 731 (1119)
+++||.++++.++++.++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCC---CCC---------CCc---------ccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHH
Q 001228 732 VNEFLGGRWDAQN---KDP---------SIN---------QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790 (1119)
Q Consensus 732 ~nef~~~~~~~~~---~~~---------~~~---------~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~ 790 (1119)
+|||.+..|+|.. .++ ..| +.+.|..+|.. ++.....|+|++++++++|+++|.++++
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999888741 111 112 23578888885 4445567899999999999999999999
Q ss_pred HHHHhcCCCCCCCcceeeccchhhhc--ccccccchhhhhcccccc--ccccccccc-Cccc-ccc--cCceeEEeccce
Q 001228 791 AALAYLNPIGDSNSTVIEEDGEKQRA--SGHEAEGMQMAVRSSSKT--VGAAQNVTN-RGMI-LPF--QPLSLTFDNMSY 862 (1119)
Q Consensus 791 ~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~--~~~~i~f~~~~y 862 (1119)
++++++++.................. .....+.....++..... .......+. ...+ .|. ....++|+|++|
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~ 767 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTY 767 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEE
Confidence 99999986544332222221111000 000000000000000000 000000000 0000 011 122478899888
Q ss_pred eeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCChhhhcce
Q 001228 863 FVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARV 941 (1119)
Q Consensus 863 ~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~ 941 (1119)
.++.. .+++.+|+|||++|++||++||+|||||||||||++|+|+.++| +.+|+|.+||.+... .+++.
T Consensus 768 ~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~ 837 (1394)
T TIGR00956 768 EVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRS 837 (1394)
T ss_pred EecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcc
Confidence 76421 12457999999999999999999999999999999999987644 456999999998753 46788
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001228 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021 (1119)
Q Consensus 942 ~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 1021 (1119)
+|||+|++.+++.+||+|++.|++.++.+.....+++.+.++++++.++|.++.|+.++.++. +|||||||||+||+||
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVEL 916 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHH
Confidence 999999999999999999999998887655555566677899999999999999999876543 7999999999999999
Q ss_pred hcCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHH
Q 001228 1022 VANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100 (1119)
Q Consensus 1022 ~~~p~-illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~ 1100 (1119)
+.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+.++++++++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~ 996 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTII 996 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHH
Confidence 99997 99999999999999999999999999888999999999998666788999999998889999999999989999
Q ss_pred HHhhhhcCCCccCCCCC
Q 001228 1101 EYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1101 ~~f~~~i~g~~~~~~~~ 1117 (1119)
+||+. .|+++||++.
T Consensus 997 ~yf~~--~G~~~~p~~~ 1011 (1394)
T TIGR00956 997 NYFEK--HGAPKCPEDA 1011 (1394)
T ss_pred HHHHh--cCCCCCCCCC
Confidence 99993 7988898864
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-85 Score=800.86 Aligned_cols=585 Identities=29% Similarity=0.495 Sum_probs=494.5
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHH
Q 001228 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (1119)
Q Consensus 133 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 212 (1119)
...++++|+|+++++... .+..+++|+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 456889999999986531 114578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhc
Q 001228 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (1119)
Q Consensus 213 LL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1119)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|.++.+.. +++.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~--- 141 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEE--- 141 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHH---
Confidence 99999999987667899999999888877788999999999999999999999999999876532 11222
Q ss_pred CCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCC
Q 001228 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (1119)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsg 372 (1119)
...+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|.||||||||||
T Consensus 142 ---------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 142 ---------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ---------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 23468999999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 373 LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
||+.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcc--chhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHH
Q 001228 453 QEVTSKK--DQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1119)
Q Consensus 453 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1119)
.++.+.. .+...... ........++..+...+......... .+. .........++|.|+..+++|
T Consensus 280 l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSL----STS-KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhc----ccc-cccccccCCcHHHHHHHHHHH
Confidence 9988743 11100000 00000001110000000000000000 000 000111167899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHhh
Q 001228 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQR 609 (1119)
Q Consensus 531 ~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~-~~~~~~~~~~vf~ker 609 (1119)
.+..++|++.++..|.+|.+++++++|++||+.+.+.. ......|.+||.+.+..|..+. .++.+..++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999864433 3346788888888888776665 5788889999999999
Q ss_pred cCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 001228 610 DHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689 (1119)
Q Consensus 610 ~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~ 689 (1119)
.+++|+.++|++++.+.++|+.++.+++|.+++|||+|++++..+|+.+.+..++...++.+++.+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCc
Q 001228 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESN 769 (1119)
Q Consensus 690 ~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~ 769 (1119)
++++++.+++++||+++.+.||+||.|+.|+|+.+|+++++++|||.+....|....+ .++...|..++...++...+
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~- 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS- 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc-
Confidence 9999999999999999999999999999999999999999999999873333322211 36778888999988887655
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 770 WYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 770 ~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
.|.++.++.++.++|++++++++.+..
T Consensus 582 -~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 -FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-84 Score=797.42 Aligned_cols=572 Identities=26% Similarity=0.468 Sum_probs=484.1
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCC
Q 001228 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+++||+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||++++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998875556899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc-
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 339 (1119)
||+|||.|+++++.+... .+.+ ....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999877543210 0000 12346889999999999999999864
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
.|||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++|+|+++++.+||+++||+||++.||+||+.++.+....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998765422110 0 011234556666665544443333221
Q ss_pred CCCccc---CCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchh
Q 001228 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1119)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~ 576 (1119)
...... ..........+..++|.|+..+++|.++..+||+..+..++++.+++++++|++||+.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111000 00011122356788999999999999999999999999999999999999999999987543 345667
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHH
Q 001228 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (1119)
Q Consensus 577 ~g~lff~ll~~~~~~~-~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 655 (1119)
.|++|+.++..+|.++ ..+..+..++++|+|||.+++|++++|++++.+.++|+.++.+++|.+++|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8999999988888765 445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHh
Q 001228 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (1119)
Q Consensus 656 ~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 735 (1119)
|.+++++++...++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|+++++++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhc
Q 001228 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYL 796 (1119)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~ 796 (1119)
.+..+ .|...+....|...|..+++.+|+..++ +|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~--~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 3432221112445689999999987654 58999999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-83 Score=785.71 Aligned_cols=610 Identities=20% Similarity=0.335 Sum_probs=473.0
Q ss_pred CCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCCHH
Q 001228 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKT 211 (1119)
Q Consensus 132 ~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 211 (1119)
..++++++|.|+++.+.......+... +...+...-...++.++ ..++++|+|||++++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQ-IQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccccc-CCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 345899999999999754210111110 11111100011111112 2346799999999999999999999999999
Q ss_pred HHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHh
Q 001228 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (1119)
Q Consensus 212 TLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~ 291 (1119)
|||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+.. ....
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~--- 176 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQ--- 176 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHH---
Confidence 9999999998763 2589999999987542 23569999999999999999999999876542210 0000
Q ss_pred cCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCC
Q 001228 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371 (1119)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPts 371 (1119)
+....++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||+
T Consensus 177 ---------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 177 ---------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred ---------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 01124678999999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHH
Q 001228 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451 (1119)
Q Consensus 372 gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adf 451 (1119)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999987 589999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC---CCCccc-----CCCC-ccccccccchHHH
Q 001228 452 LQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV---PYDKSQ-----AHPA-SLVKEKYGISKWE 522 (1119)
Q Consensus 452 l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 522 (1119)
++++++...+.........+ ...+.+.+.|++... ....+.... .....+ ..+. ......+..++|.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998764321100000000 011233344432111 111111000 000000 0000 0011224567899
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHHHHHhhh
Q 001228 523 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLR 601 (1119)
Q Consensus 523 ~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~-~~~~~~~~~~~~ 601 (1119)
|+..+++|.+.. +|+..+...|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ +.+..+..+..+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 78888888999999999999999999874 23467789999999887655 556777888899
Q ss_pred hhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681 (1119)
Q Consensus 602 ~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~ 681 (1119)
+++|+|||.+++|++++|++++++.++|+.++.+++|++++|||+|+++++++||.+++++++...++.+++++++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCcc-----ccCCCCCCCcccchhh
Q 001228 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW-----DAQNKDPSINQPTIGK 756 (1119)
Q Consensus 682 ~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~~~~G~ 756 (1119)
+..+|+++++++++++++|+||+++ +||+||+|++|+||++|+++++++|||.+.+. +|.... +....+.
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c 619 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASC 619 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCC
Confidence 9999999999999999999999997 79999999999999999999999999976542 332111 0001111
Q ss_pred HHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 757 VLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 757 ~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
.++....+. ....|.++++|+++.++|+++++++|++.+
T Consensus 620 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 620 KFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122222222 234788999999999999999999998654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-81 Score=821.20 Aligned_cols=600 Identities=22% Similarity=0.402 Sum_probs=499.8
Q ss_pred CCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCCC
Q 001228 130 GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAG 209 (1119)
Q Consensus 130 ~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 209 (1119)
.++...+.+.|+|++|+++.....+ +. .....++++|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~--------------------~~-~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMK--------------------EQ-GVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCcccc--------------------cc-ccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 3455667899999999986431100 00 11123457999999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHH
Q 001228 210 KTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289 (1119)
Q Consensus 210 KSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~ 289 (1119)
|||||++|+|+.++. ..+|+|.+||++.+....++.+|||+|+|.|++.+||+|||.|++.++.+.. ....
T Consensus 919 KTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~- 989 (1470)
T PLN03140 919 KTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKE- 989 (1470)
T ss_pred HHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHH-
Confidence 999999999997642 3589999999887544445679999999999999999999999876542210 0000
Q ss_pred HhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCC
Q 001228 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369 (1119)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEP 369 (1119)
+....++++++.+||++++|+.||++..+||||||||||+||++|+.+|++||||||
T Consensus 990 -----------------------~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 990 -----------------------EKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred -----------------------HHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 011246789999999999999999888899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC-CeEEEEcCh----hHHHHHHHhc-CC-CC
Q 001228 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KC 442 (1119)
Q Consensus 370 tsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~ 442 (1119)
|+|||+.++..+++.|+++++. |+|+|+++|||+.+++++||++++|++ |+++|+|+. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 9999999999999999999864 899999999999889999999999996 899999996 6899999998 66 49
Q ss_pred CCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHH
Q 001228 443 PERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWE 522 (1119)
Q Consensus 443 p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 522 (1119)
|+..|||||+.++++..... ....++++.|+.+..+++..+...................+|..++|.
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 1193 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWG 1193 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHH
Confidence 99999999999997653211 112468888888877665544332111000011111123567889999
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHH-HHHHhhh
Q 001228 523 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAE-NAMTVLR 601 (1119)
Q Consensus 523 ~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~-~~~~~~~ 601 (1119)
|++.|++|+++.+||++.+...|+++.+++|+++|++||+.+.+..+.++.+...|++|+++++..++.... ++.+..+
T Consensus 1194 Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~e 1273 (1470)
T PLN03140 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVE 1273 (1470)
T ss_pred HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766556666777999999988887765544 4566779
Q ss_pred hhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681 (1119)
Q Consensus 602 ~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~ 681 (1119)
|++|+|||.+++|++++|+++.++.++|+.++.+++|.+++|||+||.++++.||.++++.++...++.++++++++++|
T Consensus 1274 R~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p 1353 (1470)
T PLN03140 1274 RTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTP 1353 (1470)
T ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhh
Q 001228 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKI 761 (1119)
Q Consensus 682 ~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~ 761 (1119)
+..+|..++++++.++++|+||+++.++||+||+|+||+||+.|++++++.|||.+....|.+++. .+..+....++..
T Consensus 1354 ~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~ 1432 (1470)
T PLN03140 1354 NQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG-APDPTIKWYIQDH 1432 (1470)
T ss_pred cHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC-CCCCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999887665544321 0112233445778
Q ss_pred cCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 001228 762 RGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (1119)
Q Consensus 762 ~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~ 798 (1119)
+||.. .|.|.+++++++|.++|.+++++++++++.
T Consensus 1433 ~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1433 YGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred cCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 88864 468899999999999999999999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-79 Score=745.71 Aligned_cols=565 Identities=26% Similarity=0.406 Sum_probs=475.5
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.++++|+||||.++||.+|||||+|||||||||++||||... ..++|+|.+||++.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999765 3589999999999987778899999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|||.|.|+|.++.+.+ ....+ ....+|++++.|+|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~~-------v~~~e------------------------k~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VSDEE------------------------KYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CCHHH------------------------HHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999999875432 11111 12468999999999999999999987 9
Q ss_pred CCChHHHHHHHHHHHHhcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC-
Q 001228 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE- 419 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p-~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~- 419 (1119)
|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++ .|+||+|+||||+.++++.||++++|++
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 6999999999999999999999999965
Q ss_pred CeEEEEcChh----HHHHHHHhcC-CCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHH
Q 001228 420 GQIVYQGPRD----NVLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (1119)
Q Consensus 420 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 494 (1119)
|++||.||.. .+++||++.| .+||...|||||+.|+++...+.. ...++++.|++|..+++..
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 4677999987 899999999999999987653321 1248899999999988877
Q ss_pred hhhcCCCCcccC-CCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 001228 495 SDLRVPYDKSQA-HPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1119)
Q Consensus 495 ~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~ 573 (1119)
++++.-.+.... ........+|..+.|.|++.|++|+++..||++.+...|++..++.++++|+.||+.+. +.++.
T Consensus 1076 e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~l 1152 (1391)
T KOG0065|consen 1076 ELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGL 1152 (1391)
T ss_pred HHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHH
Confidence 665432211111 23334456688999999999999999999999999999999999999999999999984 45566
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchH
Q 001228 574 SRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1119)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~~-~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1119)
++.++++|.++++...+... .......++-++||||..++|+.++|+++..++++|+.++.+++|.+++||++||...+
T Consensus 1153 qn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a 1232 (1391)
T KOG0065|consen 1153 QNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTA 1232 (1391)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhH
Confidence 77888888887766554333 44555578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHH
Q 001228 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1119)
Q Consensus 653 ~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1119)
.+++.+++..+........++.++.+++|+..+|..+.++++.++.+|+||++++..||.||+|+||+||+.|..++++.
T Consensus 1233 ~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~ 1312 (1391)
T KOG0065|consen 1233 SKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLIS 1312 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCCCCCC----CcccchhhHHhhhcC----ccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 001228 733 NEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG----FSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1119)
Q Consensus 733 nef~~~~~~~~~~~~~----~~~~~~G~~~l~~~~----~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1119)
..+++..-.|...+.. .+..+.|+.+...++ +..+..-+ ...+...|.+.+.+++.+.++|.+
T Consensus 1313 ~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1313 SQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHHHHHHHHHHHHHH
Confidence 9998765544322211 133566777766666 33222111 111223455555666666665543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-75 Score=769.06 Aligned_cols=562 Identities=25% Similarity=0.371 Sum_probs=464.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
++++|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||++++. ..++.+|||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999987432347999999998753 346789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+|||.|+++++.+.. .+..+ ....++++++.+||++++|+.||+.. ++
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 999999887653211 00000 12246789999999999999999643 47
Q ss_pred CChHHHHHHHHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC-
Q 001228 343 ISGGQKKRVTTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~-illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G- 420 (1119)
|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+|+|+++|||+..+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999976 48999999999998888999999999987
Q ss_pred eEEEEcCh----hHHHHHHHhcCC-CCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHh
Q 001228 421 QIVYQGPR----DNVLEFFEHMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (1119)
Q Consensus 421 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 495 (1119)
+++|+|+. +++.+||++.|+ +||++.|||||+.|+.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876532110 01345666666655544333
Q ss_pred hhc---CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 001228 496 DLR---VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1119)
Q Consensus 496 ~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~ 572 (1119)
++. .+..............++..++|.|++.+++|.++.++|++.+...|+++.+++|+++|++||+.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 221 11110100001112246788999999999999999999999999999999999999999999998754 345
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcch
Q 001228 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPI-FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (1119)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~v-f~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~ 651 (1119)
.++..|++|+.++...+.....++.++.++++ |+|||.+++|+.++|++++.+.++|+.++.+++|.+++||++|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 67788888888776655544455556666766 59999999999999999999999999999999999999999999988
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHH
Q 001228 652 ASR-------FFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724 (1119)
Q Consensus 652 ~~~-------f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ 724 (1119)
+.. |+.+++..++...++.+++.++++++++..+|..++++++.++++|+||+++.++||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccCCC--------C---------------------C------CCcccchhhHHhhhcCccccCc
Q 001228 725 YGQTSLLVNEFLGGRWDAQNK--------D---------------------P------SINQPTIGKVLLKIRGFSTESN 769 (1119)
Q Consensus 725 y~~~al~~nef~~~~~~~~~~--------~---------------------~------~~~~~~~G~~~l~~~~~~~~~~ 769 (1119)
|++++++.|||.+....|... . + .+|....|..+|+.+++..++
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 999999999999887655321 0 0 123356889999998887666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhc
Q 001228 770 WYWIGVGALTGYSFLFNFLFIAALAYL 796 (1119)
Q Consensus 770 ~~w~~~~~l~~~~~~f~~l~~~~l~~~ 796 (1119)
.|.+++++++|.+++ ++.++++.|.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheE
Confidence 588999999998888 6666667664
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-75 Score=734.79 Aligned_cols=763 Identities=22% Similarity=0.276 Sum_probs=428.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|++|++. .||||
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~n-gTvre 600 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQN-GTVRE 600 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhhC-CcHHH
Confidence 3799999999999999999999999999999999999875 99999998 4999999999996 59999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
||.|+..+. .+||+..-+.|..+++..+. +.+..|.||+ .+-.||
T Consensus 601 NILFG~~~d--~~rY~~Vi~aC~L~~Dle~L--------------------------------p~GD~TeIGE-rGinLS 645 (1381)
T KOG0054|consen 601 NILFGSPYD--EERYDKVIKACALKKDLEIL--------------------------------PFGDLTEIGE-RGINLS 645 (1381)
T ss_pred hhhcCcccc--HHHHHHHHHHccCHhHHhhc--------------------------------CCCCcceecC-CccCCc
Confidence 999986543 35666555555555544443 4455699997 223389
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~-~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||+++|||++.+++|+|||+|.|++|+++..+|.+ +++.+ ..++|+|+++|| -+....+|.|++|++|+|+
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~--L~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL--LRGKTVILVTHQ--LQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--hcCCEEEEEeCc--hhhhhhCCEEEEecCCeEe
Confidence 999999999999999999999999999999999999884 55443 347899999986 4788999999999999999
Q ss_pred EEcChhHHHH---HHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCC
Q 001228 424 YQGPRDNVLE---FFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP 500 (1119)
Q Consensus 424 ~~G~~~~~~~---~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 500 (1119)
.+|+++|+.+ +|+.+ ...+......+ ...+ .+.......+ .+. +.........+. ...
T Consensus 722 ~~Gty~el~~~~~~~~~l-~~~~~~~~~~~-----~~~~----------~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~ 782 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-AHEEESEQEEE-----ASEK----------DLESGESSRE-SES-RSLESLSSEEEK-SKD 782 (1381)
T ss_pred cccCHHHHHhcchhHHHH-hhccchhhccc-----cccc----------cccccccccc-hhh-hhhhhhcccccc-ccc
Confidence 9999999984 33332 00000000000 0000 0000000000 000 000000000000 000
Q ss_pred CCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCC--CCcchhhH
Q 001228 501 YDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDM--NGGSRYFG 578 (1119)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~--~~~~~~~g 578 (1119)
....+......+.+..|...|..|+.|++..+....--..++.+-..+...++.-.+..||-........ .+...|.+
T Consensus 783 ~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~ 862 (1381)
T KOG0054|consen 783 EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLG 862 (1381)
T ss_pred ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHH
Confidence 0000000111122356788899998888652111000000011111111222222223333222111111 12222222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHH
Q 001228 579 ALFF-SLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFK 657 (1119)
Q Consensus 579 ~lff-~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~ 657 (1119)
...+ ++...++..+..+.+.......-.+-++ -+-..+++.|++||+++ ..||.++
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~---------~ml~~Ilrapm~FFdtT--------------P~GRILN 919 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHD---------KLLNSILRAPMSFFDTT--------------PTGRILN 919 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhCcchhcCCC--------------Cccchhh
Confidence 2111 1111111111111111111111000000 12234666777777665 5678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHH
Q 001228 658 QFLAFFSIHNMSLPLYRLVAAVG------RTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (1119)
Q Consensus 658 ~~l~~~~~~~~~~~~~~~i~a~~------~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~ 731 (1119)
+|..++...+...+........+ --.+++.....+++.+.. +.++||.-..+|.-.+.-
T Consensus 920 RFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~p---------------l~v~~~~~~~~Y~~tsRe 984 (1381)
T KOG0054|consen 920 RFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIP---------------LGVIYYFVQRYYLATSRE 984 (1381)
T ss_pred hcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHhHH
Confidence 87776665554443322111100 000111111111111111 112233333333332222
Q ss_pred HHHhcCCccccCCCCCCCcccc---hhhHHhhhcCccc------------------------cCcchhhhHHHHHHHHHH
Q 001228 732 VNEFLGGRWDAQNKDPSINQPT---IGKVLLKIRGFST------------------------ESNWYWIGVGALTGYSFL 784 (1119)
Q Consensus 732 ~nef~~~~~~~~~~~~~~~~~~---~G~~~l~~~~~~~------------------------~~~~~w~~~~~l~~~~~~ 784 (1119)
+....+ ....|.+++.. .| +-.+|.|.. .+.|+-+.+-.+...+++
T Consensus 985 LkRLes-----itRSPi~sh~~Etl~G--lsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~ 1057 (1381)
T KOG0054|consen 985 LKRLES-----ITRSPIYSHFSETLQG--LSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVL 1057 (1381)
T ss_pred HHHhhh-----cccchHHHhHHHHhcC--cceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 11111111100 01 011111111 122322222223222222
Q ss_pred HHHHHHHHHHhcCCCCCCC-----cceeeccchhhhc--ccccccchhhhhccccc---ccccccccccCcccccccC--
Q 001228 785 FNFLFIAALAYLNPIGDSN-----STVIEEDGEKQRA--SGHEAEGMQMAVRSSSK---TVGAAQNVTNRGMILPFQP-- 852 (1119)
Q Consensus 785 f~~l~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-- 852 (1119)
+..++.+ +..-....... ++...-....+.. ...+.+..+.+++...+ ..+............+.+|
T Consensus 1058 ~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~ 1136 (1381)
T KOG0054|consen 1058 IAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSK 1136 (1381)
T ss_pred HHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCC
Confidence 2222211 11111010010 0000000000000 00001111111111000 0000000000010122233
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|++-.|.. +-..||+||||+|+|||++||||++|||||||.++|.+... +.+|+|.|||.+
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVD 1203 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCee
Confidence 46899996543321 12359999999999999999999999999999999999876 468999999999
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccC------CCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG------LPG 1003 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~ 1003 (1119)
+.+ ..+|++++.+||+|.+| ++++|.|.|+..+..++.+|++||.++|.+...+..+ .+|
T Consensus 1204 I~~igL~dLRsrlsIIPQdPvLF-----------sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~eg 1272 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDPVLF-----------SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEG 1272 (1381)
T ss_pred cccccHHHHHhcCeeeCCCCcee-----------cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCC
Confidence 865 46788999999999865 4555666688888899999999999999765433221 235
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..++|.||||++|+||||+++++||+|||+|+++|+++...|+++||+..+ +||||+|.|+. +....+|+|+||++
T Consensus 1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl--~TVmd~DrVlVld~- 1348 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRL--NTVMDSDRVLVLDA- 1348 (1381)
T ss_pred CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeecc--chhhhcCeEEEeeC-
Confidence 678999999999999999999999999999999999999999999999874 79999999996 47778999999986
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|+|+++|++.
T Consensus 1349 G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1349 GRVVEFDSPA 1358 (1381)
T ss_pred CeEeecCChH
Confidence 7999888764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-74 Score=706.82 Aligned_cols=764 Identities=23% Similarity=0.324 Sum_probs=416.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 258 (1119)
++..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.++.. +..+|.|+|+|.+|.
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~ 440 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA 440 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc
Confidence 4678999999999999999999999999999999999999997 9999999999987653 578999999998886
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.||+|||.|+. |+...++..+++..++. .+. +..|++..||.||+.
T Consensus 441 -~tI~eNI~~G~-------------------------~dat~~~i~~a~k~ana-----~~f---i~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 441 -TTIRENIRYGK-------------------------PDATREEIEEAAKAANA-----HDF---ILKLPDGYDTLVGER 486 (1228)
T ss_pred -ccHHHHHhcCC-------------------------CcccHHHHHHHHHHccH-----HHH---HHhhHHhhcccccCC
Confidence 69999998852 23333333444432221 122 345788999999982
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
.. .|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++..+ |+|+|+..|..+ +.+.+|+|++|+
T Consensus 487 g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLS--tIrnaD~I~v~~ 561 (1228)
T KOG0055|consen 487 GV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLS--TIRNADKIAVME 561 (1228)
T ss_pred CC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehh--hhhccCEEEEEE
Confidence 22 2999999999999999999999999999999999999999999998765 788888877754 556699999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCCh-hHHH--HhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhch----hhh
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGV-ADFL--QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH----MGQ 491 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~-adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~ 491 (1119)
+|+|+++|+++|+++. .+. ++.. |+.....+. ... ... ..++.....+.+. ..+
T Consensus 562 ~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~-~~~---~~~----~~~~~~~s~~~s~~~~~~~~ 622 (1228)
T KOG0055|consen 562 EGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAED-EEE---EES----LKEERSRSLKSSSSSPSLSR 622 (1228)
T ss_pred CCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhc-ccc---ccc----hhhhhhhccccccccccccC
Confidence 9999999999999862 011 1111 111111110 000 000 0000000000000 000
Q ss_pred h-HHhhh--cCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh---hccccC
Q 001228 492 Q-IASDL--RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTV---YFRTEM 565 (1119)
Q Consensus 492 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtv---f~~~~~ 565 (1119)
. ..... ..+.++....+. .......+.|+.++.+ +.+|..+.-.....+.+-....+.+++++.+ |+..+.
T Consensus 623 ~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~-~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~ 699 (1228)
T KOG0055|consen 623 GSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFKLN-KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD 699 (1228)
T ss_pred Ccccccccccccccccccccc--ccccccccHHHHHHhc-cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh
Confidence 0 00000 000000000000 1111233445444433 2233322222222222222233333333332 221111
Q ss_pred CCCCCCCcchhhHHHHHHHHHHH----------HHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHH
Q 001228 566 SVGDMNGGSRYFGALFFSLLNIM----------FNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDS 635 (1119)
Q Consensus 566 ~~~~~~~~~~~~g~lff~ll~~~----------~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~ 635 (1119)
+ ........+..+|.++.... |.-+.+....-.|..
T Consensus 700 ~--~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~-------------------------------- 745 (1228)
T KOG0055|consen 700 D--ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSM-------------------------------- 745 (1228)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence 1 11111112333333222111 111111111111111
Q ss_pred HHHHhhhhhccCCcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchH
Q 001228 636 TIWVALTYYTIGYDPAA---SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEP 712 (1119)
Q Consensus 636 ~i~~~i~Y~~~g~~~~~---~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~ 712 (1119)
.|..+.+.=+++..+. ++...++......... .+...++.++..+..+..|+++..
T Consensus 746 -~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~---------------~v~~rl~~vv~~~~~~~~~iiiaf----- 804 (1228)
T KOG0055|consen 746 -MFRALLRQEVGWFDDPENSGALSSRLATDASNVRA---------------AVGDRLSLVVQNIAAVIIGIIIAF----- 804 (1228)
T ss_pred -HHHHHHcCCCcccCCCccchHHHHHHhcchHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 1222222222222111 2222222211110000 111122222222222222222111
Q ss_pred HHHH-----HHhHcHHHHHHHHHHHHHhcCCccccCC-C-C-CC------Cc-----ccchhhHHhhhcCcc-----cc-
Q 001228 713 FLRW-----GYYISPMMYGQTSLLVNEFLGGRWDAQN-K-D-PS------IN-----QPTIGKVLLKIRGFS-----TE- 767 (1119)
Q Consensus 713 ~~~W-----~~~isp~~y~~~al~~nef~~~~~~~~~-~-~-~~------~~-----~~~~G~~~l~~~~~~-----~~- 767 (1119)
|..| +.-+.|+.+....+......+..-++.. . . .. .+ ..+.-..+.+.+.-. ..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1112 1122333332222221111110000000 0 0 00 00 000000111110000 00
Q ss_pred -CcchhhhHHHHHHHHHHH---HHHHHHHHHhcCCCCCCCcceeeccc-----hh---hhcc--cccccc-hh--hhhcc
Q 001228 768 -SNWYWIGVGALTGYSFLF---NFLFIAALAYLNPIGDSNSTVIEEDG-----EK---QRAS--GHEAEG-MQ--MAVRS 830 (1119)
Q Consensus 768 -~~~~w~~~~~l~~~~~~f---~~l~~~~l~~~~~~~~~~~~~~~~~~-----~~---~~~~--~~~~~~-~~--~~~~~ 830 (1119)
....|.+++.-+...++| .+.++++...... +........... .. ..+. ..+... .. ..+-.
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~-g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~ 963 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISN-GEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFE 963 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 011233332222222211 1222222222211 100000000000 00 0000 000000 00 00000
Q ss_pred cccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHH
Q 001228 831 SSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910 (1119)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl 910 (1119)
.....+........+...|.....|+|+||+|.||..+ +.++|+|+|++|++|+-+||||||||||||++
T Consensus 964 i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 964 ILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred HhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 00000001111122333455556799999999988543 46799999999999999999999999999999
Q ss_pred HhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 001228 911 DVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987 (1119)
Q Consensus 911 ~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 987 (1119)
.+|-+..+ +..|.|.|||.+++. ..+|+.+|.|.|+|.+|. -|++||+.|+. . +++.. ++.++++
T Consensus 1034 ~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~--~---~vs~~----eIi~Aak 1101 (1228)
T KOG0055|consen 1034 SLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS--E---EVSEE----EIIEAAK 1101 (1228)
T ss_pred HHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC--C---CCCHH----HHHHHHH
Confidence 99997665 568999999998754 567889999999999976 49999999981 1 12222 2344444
Q ss_pred HcC-------CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 001228 988 LVE-------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060 (1119)
Q Consensus 988 ~~~-------l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi 1060 (1119)
..+ |.+=.|..+|..|. +||||||||++||||+++||+||||||+||.||.++.+.|+++|.+.. .|+|.|
T Consensus 1102 ~ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~I 1179 (1228)
T KOG0055|consen 1102 LANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTI 1179 (1228)
T ss_pred HhhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEE
Confidence 443 33345677776654 799999999999999999999999999999999999999999999975 599999
Q ss_pred EEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1061 ~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+|+|+++ .+..+|.|.+++ +|+|++.|+.
T Consensus 1180 vIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1180 VIAHRLS--TIQNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred EEecchh--hhhcCCEEEEEE-CCEEEecccH
Confidence 9999975 788999999997 5899999985
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-71 Score=725.06 Aligned_cols=217 Identities=25% Similarity=0.402 Sum_probs=184.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++ .+++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|+++
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 367777765442 012469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+|||||++.+++.+|++|++.+.+.++. ...++.++.++++++.++|.+..++.+ ..|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 223344566889999999998888874 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...||++++|.+ |++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999975 57778999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 53
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-69 Score=712.97 Aligned_cols=212 Identities=24% Similarity=0.309 Sum_probs=178.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.|+. +...+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEe
Confidence 46999999987742 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+|+.++|+||++.++.. |++|||.++. . ..++.++++++..++.+.. |..++.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C----CCHHHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 754 5678899999999999876 9999996531 1 1345578888888876543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL--~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL--NTIIDCDRILVLDA 1447 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCCh--HHHHhCCEEEEEEC
Confidence 235799999999999999999999999999999999999999999999986 489999999996 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1448 -G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 -GRVVEFDTPE 1457 (1622)
T ss_pred -CEEEEeCCHH
Confidence 8999999754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=707.76 Aligned_cols=212 Identities=23% Similarity=0.304 Sum_probs=178.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.++. +.+.+|+||||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEE
Confidence 46899999987741 12359999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.+ ..+|+.++|+||++.+++. |++|||.+.. + ..++.++++++..++.+.. |..++.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 643 5678899999999999876 9999996431 1 2244578889988886543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++++.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRL--NTIIDCDKILVLSS 1444 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999975 489999999996 56778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 1445 -G~ivE~Gt~~ 1454 (1495)
T PLN03232 1445 -GQVLEYDSPQ 1454 (1495)
T ss_pred -CEEEEECCHH
Confidence 8999999854
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-67 Score=603.21 Aligned_cols=491 Identities=27% Similarity=0.348 Sum_probs=363.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCcc-------cceEEEeccCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1119)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.+|||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999886 4568999999987644332 26799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
.+.|-+||.+.+.-..+.++...+ .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 567779999998765544332110 1122345678999999987655
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
+.+.+.|||||||||.||+||+.+|++|++|||||+||+.++.+|++.|+++.++.|.+++++.|. ..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD-l~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC-HHHHHHhcCe
Confidence 445677999999999999999999999999999999999999999999999998887777766655 4578899999
Q ss_pred EEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhH
Q 001228 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQI 493 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 493 (1119)
|+||++|++++.|+.+++.+- |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 01100 00
Q ss_pred HhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 001228 494 ASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1119)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~ 573 (1119)
.+. .|.. .....
T Consensus 255 l~a--~p~~-----------------------------------------------------------------~~~~~- 266 (539)
T COG1123 255 LAA--VPRL-----------------------------------------------------------------GDEKI- 266 (539)
T ss_pred Hhh--CCCc-----------------------------------------------------------------ccccc-
Confidence 000 0000 00000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHH
Q 001228 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS 653 (1119)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 653 (1119)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHH
Q 001228 654 RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (1119)
Q Consensus 654 ~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 733 (1119)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchh
Q 001228 734 EFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813 (1119)
Q Consensus 734 ef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 813 (1119)
.+. ....+
T Consensus 267 -----~~~-~~~~~------------------------------------------------------------------ 274 (539)
T COG1123 267 -----IRL-PRRGP------------------------------------------------------------------ 274 (539)
T ss_pred -----ccc-ccccc------------------------------------------------------------------
Confidence 000 00000
Q ss_pred hhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCC
Q 001228 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPG 893 (1119)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~G 893 (1119)
.+ ...-++.+|++-++..+...- ....+...+++||||++++|
T Consensus 275 ----------------------------------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~G 317 (539)
T COG1123 275 ----------------------------------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREG 317 (539)
T ss_pred ----------------------------------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCC
Confidence 00 000123333332222111000 00012346999999999999
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC--C---hhhhcceEEEEccCCC--CCCCCCHHHHHHHHHH
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--N---QETFARVSGYCEQNDI--HSPYVTVYESLLYSAW 966 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~--~---~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~ 966 (1119)
|++||||+||||||||.++|+|+.++ ..|.|.++|.+. . ....++.+-+++|+|. +.|.+||++.+.....
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 99999999999999999999998874 589999999762 1 1234567788888875 7799999999987655
Q ss_pred hhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 001228 967 LRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1119)
Q Consensus 967 l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i 1045 (1119)
+... ....+.++.+.++++.++|.. +.+++ +.+||||||||+||||||+.+|++|++|||||.||+..++.|
T Consensus 396 ~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 396 IHGG--GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred hhcc--cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 4432 224566678999999999986 56666 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC----ChHHHHHHhhhhcCC
Q 001228 1046 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH----ESHKLIEYFEVSIPF 1109 (1119)
Q Consensus 1046 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~----~~~~l~~~f~~~i~g 1109 (1119)
.++|+++.++ |.|.|+||||++ -+...||++++|.+ |++++.||... ..+.-.+.+..++|.
T Consensus 469 lnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~~~v~~~p~h~Ytr~L~~avp~ 535 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPTEKVFENPQHPYTRKLLAAVPK 535 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCHHHHhcCCCChHHHHHHHhccc
Confidence 9999999865 999999999986 47778999999975 89999997432 223344444435554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=680.78 Aligned_cols=217 Identities=19% Similarity=0.309 Sum_probs=177.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC------------
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 920 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g------------ 920 (1119)
..|+|+||+|.|+.. ++..+|+|+||+|+||+++||+|+||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 368999999987521 1235999999999999999999999999999999999976531
Q ss_pred ----------------------------------------eeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCH
Q 001228 921 ----------------------------------------YIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 921 ----------------------------------------~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+|.+||.++. ...+++.+|||+|++.+|+ .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 14899999999864 3567889999999999875 699
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+||+.|+. .+.. ++.++++++..++.++ .|..+|.. ...||||||||++|||||+++|+||||
T Consensus 1313 reNI~~g~-----~~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 1222 2346777777776553 35556643 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecC---cE-EEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG---GR-VIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g---G~-v~~~g~~ 1092 (1119)
|||||+||+++.+.|++.|.++. .+++|+|+|+|++ .....||++++|+++ |+ +++.|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 3589999999996 467889999999872 66 5578874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=688.45 Aligned_cols=212 Identities=21% Similarity=0.242 Sum_probs=178.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++.. ...+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999877521 1259999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+|+.++|+||++.+++. |++|||.... + ..++.++++++.+++.+.. |..++.
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q----YSDEEVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C----CCHHHHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 754 5678899999999999986 9999995211 1 2244578899998886543 334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....+|++++|++
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl--~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRL--NTIMDYTRVIVLDK 1494 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 335799999999999999999999999999999999999999999999875 489999999996 57788999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1495 -G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 -GEVAEFGAPS 1504 (1522)
T ss_pred -CEEEEECCHH
Confidence 8999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=623.45 Aligned_cols=469 Identities=23% Similarity=0.324 Sum_probs=350.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999998861 138999999998754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.......+. .+ .. +....++++++.+||++..++.+++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------YD------------------------AMYLRAQKLLAQLKLDINPATPVGN-- 143 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------HH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999988643210000 00 00 0012356789999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 144 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRD 218 (506)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 477877776654 578889999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+.+++.. .+. .+
T Consensus 219 G~i~~~~~~~~~~~---------------~~~-----------------------------~~----------------- 237 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DDI-----------------------------IT----------------- 237 (506)
T ss_pred CEEeeecccccCCH---------------HHH-----------------------------HH-----------------
Confidence 99998876443200 000 00
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. ++... .
T Consensus 238 -------------------------------~----------------------------~~~~~-----~--------- 244 (506)
T PRK13549 238 -------------------------------M----------------------------MVGRE-----L--------- 244 (506)
T ss_pred -------------------------------H----------------------------hhCcC-----c---------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
. . . . +
T Consensus 245 ------~----~------~-------------------------------------~-~--------------------- 249 (506)
T PRK13549 245 ------T----A------L-------------------------------------Y-P--------------------- 249 (506)
T ss_pred ------c----c------c-------------------------------------c-c---------------------
Confidence 0 0 0 0 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
. ... . + ....++++|+++.++. .++..+|+||||+|++||++||+
T Consensus 250 -------~-~~~----------~------~-~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~ 294 (506)
T PRK13549 250 -------R-EPH----------T------I-GEVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIA 294 (506)
T ss_pred -------c-ccc----------C------C-CCceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEe
Confidence 0 000 0 0 0012456666543210 01235899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcC--
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLS-- 970 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~-- 970 (1119)
|+||||||||+++|+|...+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+||.||+.+.......
T Consensus 295 G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (506)
T PRK13549 295 GLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG 373 (506)
T ss_pred CCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence 99999999999999998641 147999999976532 12345699999996 467889999999875321111
Q ss_pred CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001228 971 SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1119)
Q Consensus 971 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1049 (1119)
.........+.+.++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.++++|
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 448 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 0012233345688999999996 4666653 479999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC-hHHHHHHh
Q 001228 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1050 ~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~-~~~l~~~f 1103 (1119)
++++++|+|||++||+++ ++.+.||++++|.+ |+++..|+..+. .+++.+.+
T Consensus 449 ~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~~~~~~~~~~ 501 (506)
T PRK13549 449 NQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNLTQEQVMEAA 501 (506)
T ss_pred HHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccCCHHHHHHHH
Confidence 999888999999999975 56778999999975 789888876553 33344443
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=623.15 Aligned_cols=458 Identities=22% Similarity=0.295 Sum_probs=345.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999886 9999999998765332 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++...... .+.. ... +. .+....++.+++.+||++..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~-----------~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NII-----------DW-------------REMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhccccccc--cccc-ccc-----------CH-------------HHHHHHHHHHHHHcCCCCCcccchhh--
Confidence 9999999875321000 0000 000 00 00112356789999999888998887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.++||++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 7787777665 4578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+++++.. .+.. +..
T Consensus 221 G~i~~~g~~~~~~~---------------~~~~-----------------------------~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DDIV-----------------------------RLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HHHH-----------------------------HHh---------------
Confidence 99999887654310 0000 000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
+... ..
T Consensus 242 -------------------------------------------------------------~~~~-----~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VGRE-----LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------cCCC-----cc--------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
..+
T Consensus 248 -------------------------------------------------------------------------~~~---- 250 (510)
T PRK09700 248 -------------------------------------------------------------------------NRF---- 250 (510)
T ss_pred -------------------------------------------------------------------------ccc----
Confidence 000
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. .
T Consensus 251 -----~~----~-------------------------------------------------------------------- 253 (510)
T PRK09700 251 -----NA----M-------------------------------------------------------------------- 253 (510)
T ss_pred -----cc----c--------------------------------------------------------------------
Confidence 00 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
.+.. .. . . .+..++++|++... + .+|+||||+|++||+++|+
T Consensus 254 --------~~~~---~~-----~------~-~~~~l~~~~l~~~~-------------~--~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK09700 254 --------KENV---SN-----L------A-HETVFEVRNVTSRD-------------R--KKVRDISFSVCRGEILGFA 295 (510)
T ss_pred --------cccc---cc-----C------C-CCcEEEEeCccccC-------------C--CcccceeEEEcCCcEEEEE
Confidence 0000 00 0 0 00125666665321 1 2899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhh---c
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLR---L 969 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~---~ 969 (1119)
||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.||+.+....+ .
T Consensus 296 G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (510)
T PRK09700 296 GLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY 373 (510)
T ss_pred CCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence 9999999999999999865 357999999976532 12345799999983 5778899999998753211 0
Q ss_pred C--CC-ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 001228 970 S--SD-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1119)
Q Consensus 970 ~--~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i 1045 (1119)
. .. .......+.+.++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+++.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 448 (510)
T PRK09700 374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448 (510)
T ss_pred cccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHH
Confidence 0 00 01222335578999999996 6666663 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1046 ~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+++|++++++|.|||++|||++ .+...||++++|.+ |+++..++.
T Consensus 449 ~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 449 YKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999878999999999975 57788999999975 788887765
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=671.44 Aligned_cols=212 Identities=24% Similarity=0.272 Sum_probs=178.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|.|+|+++.|+. +...+|+||||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999987742 12359999999999999999999999999999999999876 458999999998
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++|+||++.++.. |++|||.... + ..++.++++++.+++.+.. |..++.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------E----ASSAEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------C----CCHHHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 75 35678899999999999876 9999994311 1 1245688999999887643 334444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1003 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..+||||||||+||||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||+|++|+
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 3357999999999999999996 89999999999999999999999999875 479999999996 5778899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+|++.|+..
T Consensus 1519 ~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1519 H-GAVAEMGSPR 1529 (1560)
T ss_pred C-CEEEEECCHH
Confidence 5 8999999853
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=618.96 Aligned_cols=451 Identities=22% Similarity=0.337 Sum_probs=345.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|++|.+|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999887 999999998875322 13569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.......... ... +....++++++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI------DWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCcc------CHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 99999998864321000000 000 0012346789999999888888887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999875 377877776655 578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++..|+.+++.. .+ ..+.+
T Consensus 217 G~i~~~~~~~~~~~---------------~~-----------------------------~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE---------------DS-----------------------------LIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH---------------HH-----------------------------HHHHh---------------
Confidence 99998776443200 00 00000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
+.
T Consensus 238 -------------------------------------------------------------~~----------------- 239 (501)
T PRK10762 238 -------------------------------------------------------------VG----------------- 239 (501)
T ss_pred -------------------------------------------------------------cC-----------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
.+
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK10762 240 ------------------------------------------------------------------------------RK 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. ...+
T Consensus 242 ~~--~~~~------------------------------------------------------------------------ 247 (501)
T PRK10762 242 LE--DQYP------------------------------------------------------------------------ 247 (501)
T ss_pred cc--cccc------------------------------------------------------------------------
Confidence 00 0000
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+ . + + .+..++++|++. .+|+|+||+|++||++||+
T Consensus 248 -------~~~-----~------~------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~li 284 (501)
T PRK10762 248 -------RLD-----K------A------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVS 284 (501)
T ss_pred -------ccc-----c------C------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEe
Confidence 000 0 0 0 001245566541 2699999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhc-C-
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRL-S- 970 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~-~- 970 (1119)
||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.|++.+...... .
T Consensus 285 G~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 362 (501)
T PRK10762 285 GLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362 (501)
T ss_pred cCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence 9999999999999999865 357999999977532 12345699999996 46788999999987532110 0
Q ss_pred -CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 971 -SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 971 -~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
.........+.+.++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 437 (501)
T PRK10762 363 GGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL 437 (501)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0012223345688999999995 5666663 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~ 1095 (1119)
|++++++|.|||++||+++ .+...||++++|++ |++++.|+....
T Consensus 438 l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 438 INQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 9999878999999999975 57778999999975 789988876543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=626.84 Aligned_cols=488 Identities=21% Similarity=0.232 Sum_probs=350.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----------CCc------c-cce
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----------EFV------P-QRT 246 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----------~~~------~-~~~ 246 (1119)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|..++ ... . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999886 899999986431 100 1 246
Q ss_pred EEEeccCC--CCCCCCCHHHHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHH
Q 001228 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (1119)
Q Consensus 247 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (1119)
+|||+|++ .+++.+||+||+.|..+.. +.. +. +....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999997 6788899999999875431 110 00 01123567899
Q ss_pred HcCCcc---cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 001228 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (1119)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~ 400 (1119)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|++.
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999964 46777776 9999999999999999999999999999999999999999999999876577877665
Q ss_pred ecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHH
Q 001228 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 480 (1119)
Q Consensus 401 ~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 480 (1119)
|. ..++.++||+|++|++|++++.|+++++.. .|.+....+++..+
T Consensus 227 Hd-l~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~------------------------- 272 (623)
T PRK10261 227 HD-MGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV------------------------- 272 (623)
T ss_pred CC-HHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-------------------------
Confidence 54 567889999999999999999998876521 01000000000000
Q ss_pred HHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Q 001228 481 VEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVY 560 (1119)
Q Consensus 481 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf 560 (1119)
+
T Consensus 273 -------------------~------------------------------------------------------------ 273 (623)
T PRK10261 273 -------------------P------------------------------------------------------------ 273 (623)
T ss_pred -------------------C------------------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHh
Q 001228 561 FRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640 (1119)
Q Consensus 561 ~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~ 640 (1119)
+.. ...+.
T Consensus 274 -~~~----~~~~~------------------------------------------------------------------- 281 (623)
T PRK10261 274 -QLG----AMKGL------------------------------------------------------------------- 281 (623)
T ss_pred -ccc----ccccc-------------------------------------------------------------------
Confidence 000 00000
Q ss_pred hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhH
Q 001228 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYI 720 (1119)
Q Consensus 641 i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 720 (1119)
. .+
T Consensus 282 --------~-------------------------------------------------------~~-------------- 284 (623)
T PRK10261 282 --------D-------------------------------------------------------YP-------------- 284 (623)
T ss_pred --------c-------------------------------------------------------CC--------------
Confidence 0 00
Q ss_pred cHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001228 721 SPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIG 800 (1119)
Q Consensus 721 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~ 800 (1119)
.......... +. .
T Consensus 285 -----------------~~~~~~~~~~--~~--~---------------------------------------------- 297 (623)
T PRK10261 285 -----------------RRFPLISLEH--PA--K---------------------------------------------- 297 (623)
T ss_pred -----------------cccccccccc--cc--c----------------------------------------------
Confidence 0000000000 00 0
Q ss_pred CCCcceeeccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccc
Q 001228 801 DSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRL 880 (1119)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~ 880 (1119)
.. . . .. .. . . +.....++++|+++.++..... ........
T Consensus 298 ------------~~-~----~-----~~------~~--~--~------~~~~~~L~~~~l~~~y~~~~~~--~~~~~~~~ 337 (623)
T PRK10261 298 ------------QE-P----P-----IE------QD--T--V------VDGEPILQVRNLVTRFPLRSGL--LNRVTREV 337 (623)
T ss_pred ------------cC-c----c-----cc------cc--c--c------cCCCceEEEeeeEEEEcCCCcc--ccccCCce
Confidence 00 0 0 00 00 0 0 0001136777777655311000 00000124
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCC--CCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~--~~~ 952 (1119)
.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 69999999999999999999999999999999999875 458999999986532 12356799999997 478
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+||.|++.+....+. ........+.+.++++.++|. ...++. +.+|||||||||+|||||+.+|+|||||
T Consensus 416 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 89999999987643321 112233456788999999995 455665 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..|+++|++++++ |.|||++|||++ .+...||++++|.+ |++++.|+..
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999765 899999999975 56778999999975 7999988754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-64 Score=666.33 Aligned_cols=211 Identities=22% Similarity=0.274 Sum_probs=177.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+|+++.++. +.+.+|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999987752 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+.. ..+++.++|+||+|.+++. |++|||.... ...++.++++++.++|.+.. |..++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 753 5578899999999999986 9999994321 12345688999999886543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||++++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl--~ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRV--EALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC
Confidence 335799999999999999999999999999999999999999999999976 479999999996 56778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 8999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-65 Score=615.03 Aligned_cols=454 Identities=21% Similarity=0.282 Sum_probs=343.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 45999999999999999999999999999999999999887 9999999988754322 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.... .+ + ....++.+++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~------~~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPK------RQ--------A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhccccc------ch--------H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 9999999874210 00 0 011345688999999888888887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++. +.|+|++.|++ .++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKL-PEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764 77877776654 578899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|++++.|+++++... +.+ +.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhC------------c
Confidence 999999987654210 000 00000 0
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. .. ......
T Consensus 240 ----~-~~------------------------------------------------------------~~~~~~------ 248 (510)
T PRK15439 240 ----A-RE------------------------------------------------------------KSLSAS------ 248 (510)
T ss_pred ----c-cc------------------------------------------------------------cccccc------
Confidence 0 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
.
T Consensus 249 ----------------------------------~--------------------------------------------- 249 (510)
T PRK15439 249 ----------------------------------Q--------------------------------------------- 249 (510)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
.
T Consensus 250 -------------------------------------------------------------------------------~ 250 (510)
T PRK15439 250 -------------------------------------------------------------------------------K 250 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. . .+.
T Consensus 251 ~~----~----------------~~~------------------------------------------------------ 256 (510)
T PRK15439 251 LW----L----------------ELP------------------------------------------------------ 256 (510)
T ss_pred cc----c----------------ccc------------------------------------------------------
Confidence 00 0 000
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+. . . +..+..+.++|++. .+|+||||+|++||++||+
T Consensus 257 -------~~~~-------~---~------~~~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK15439 257 -------GNRR-------Q---Q------AAGAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLA 295 (510)
T ss_pred -------cccc-------c---c------CCCCceEEEeCCCC------------------CCccceeEEEcCCcEEEEE
Confidence 0000 0 0 00011245666541 1599999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcCCC
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSSD 972 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~~~ 972 (1119)
|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+....
T Consensus 296 G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~ 373 (510)
T PRK15439 296 GVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373 (510)
T ss_pred CCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccc
Confidence 9999999999999999865 3579999999865321 1245699999985 47788999999864311110000
Q ss_pred ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 973 VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051 (1119)
Q Consensus 973 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1051 (1119)
......++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|++
T Consensus 374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 374 IKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred cChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence 01122335678999999996 5666663 57999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1052 ~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
++++|.|||++|||++ .+...||++++|.+ |++++.|....
T Consensus 449 l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 449 IAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred HHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9888999999999986 57778999999974 78998887654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=616.48 Aligned_cols=463 Identities=22% Similarity=0.303 Sum_probs=344.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCCcc-------cceEEEeccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1119)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999997
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--
Q 001228 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (1119)
Q Consensus 255 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 329 (1119)
. +++.+||+|++.+..... +.. .. +....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 667789999987643211 100 00 01123567899999975
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
..++.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHH
Confidence 35777877 9999999999999999999999999999999999999999999999765578888777665 4778
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhch
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH 488 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 488 (1119)
++||+|++|++|++++.|+++++... |.. .+ .
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~----~~-----------------------------~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH----PY-----------------------------T------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC----HH-----------------------------H-------
Confidence 89999999999999999987654210 000 00 0
Q ss_pred hhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 001228 489 MGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVG 568 (1119)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~ 568 (1119)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 001228 569 DMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGY 648 (1119)
Q Consensus 569 ~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~ 648 (1119)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHH
Q 001228 649 DPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (1119)
Q Consensus 649 ~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 728 (1119)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceee
Q 001228 729 SLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIE 808 (1119)
Q Consensus 729 al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~ 808 (1119)
....+ .
T Consensus 261 --------------~~~~~---~--------------------------------------------------------- 266 (529)
T PRK15134 261 --------------PSGDP---V--------------------------------------------------------- 266 (529)
T ss_pred --------------ccccc---c---------------------------------------------------------
Confidence 00000 0
Q ss_pred ccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeecccc-ccccccccccceeeccce
Q 001228 809 EDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAE-MKTEGVGEDRLQLLHSVS 887 (1119)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~-~~~~~~~~~~~~vL~~vs 887 (1119)
.. .. + .+..++++|+++.++...+ .+ ...+.+.+|+|||
T Consensus 267 ------------------~~-------------~~-----~-~~~~l~~~~l~~~~~~~~~~~~---~~~~~~~il~~is 306 (529)
T PRK15134 267 ------------------PL-------------PE-----P-ASPLLDVEQLQVAFPIRKGILK---RTVDHNVVVKNIS 306 (529)
T ss_pred ------------------cc-------------CC-----C-CCCcccccCcEEEeecCccccc---cccccceeeecce
Confidence 00 00 0 0001344555443321000 00 0001246999999
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCC--CCCCCCCHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQND--IHSPYVTVYE 959 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~--~~~~~~tv~e 959 (1119)
|+|++||++||+|+||||||||+++|+|... .+|+|.++|.++.. . .+++.+||++|++ .+++.+||.|
T Consensus 307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e 383 (529)
T PRK15134 307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQ 383 (529)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHH
Confidence 9999999999999999999999999999863 47999999976532 1 1345699999997 3678899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
|+.+....+.. .......++.+.++++.+++. +..++. +.+|||||||||+|||||+.+|+||||||||+|||
T Consensus 384 ~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 384 IIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred HHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 99886433211 112233445688999999996 455665 45799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.++..+++.|++++++ |+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 458 ~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 458 KTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999999865 899999999975 46678999999975 789888874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=614.48 Aligned_cols=445 Identities=23% Similarity=0.318 Sum_probs=339.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECC-----------------------ccC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G-----------------------~~~ 238 (1119)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 565 89999972 211
Q ss_pred C-------CC------cccceEEEeccC-CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHH
Q 001228 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (1119)
Q Consensus 239 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1119)
. .. ..++.++|++|+ +.+++.+||+||+.|.....+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GK---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HH----------------
Confidence 0 00 113569999997 67888899999998864322110 00
Q ss_pred HHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 001228 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (1119)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~ 384 (1119)
+....++.+++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 0112356789999999888888877 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhh
Q 001228 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQY 464 (1119)
Q Consensus 385 l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~ 464 (1119)
|+++++..+.|+|++.|++ ..+.++||+|++|++|++++.|+++++.+.+..
T Consensus 211 l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------------------- 262 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------------------- 262 (520)
T ss_pred HHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------------------
Confidence 9999765577887777665 467789999999999999988876543210000
Q ss_pred hhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHH
Q 001228 465 WFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544 (1119)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~ 544 (1119)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHH
Q 001228 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIW 624 (1119)
Q Consensus 545 ~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~ 624 (1119)
...
T Consensus 263 ------------------------~~~----------------------------------------------------- 265 (520)
T TIGR03269 263 ------------------------GVS----------------------------------------------------- 265 (520)
T ss_pred ------------------------hch-----------------------------------------------------
Confidence 000
Q ss_pred HHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcc
Q 001228 625 LLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFV 704 (1119)
Q Consensus 625 i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~ 704 (1119)
.
T Consensus 266 --------------------------~----------------------------------------------------- 266 (520)
T TIGR03269 266 --------------------------E----------------------------------------------------- 266 (520)
T ss_pred --------------------------h-----------------------------------------------------
Confidence 0
Q ss_pred ccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHH
Q 001228 705 MAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784 (1119)
Q Consensus 705 i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~ 784 (1119)
+ . .
T Consensus 267 -----~-----------------------------------~----~--------------------------------- 269 (520)
T TIGR03269 267 -----V-----------------------------------E----K--------------------------------- 269 (520)
T ss_pred -----h-----------------------------------c----c---------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHhcCCCCCCCcceeeccchhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceee
Q 001228 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFV 864 (1119)
Q Consensus 785 f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v 864 (1119)
. . .. + .....++++|+++.+
T Consensus 270 -------------~-----------------~----------~~-------------~-------~~~~~l~~~~l~~~~ 289 (520)
T TIGR03269 270 -------------E-----------------C----------EV-------------E-------VGEPIIKVRNVSKRY 289 (520)
T ss_pred -------------c-----------------c----------cc-------------C-------CCCceEEEeccEEEe
Confidence 0 0 00 0 000124566666544
Q ss_pred eccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-Ccc---CCh-----
Q 001228 865 DMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP---KNQ----- 935 (1119)
Q Consensus 865 ~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-g~~---~~~----- 935 (1119)
+.. ..+++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++ |.+ ...
T Consensus 290 ~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 290 ISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred ccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhh
Confidence 210 0012459999999999999999999999999999999999865 358999996 532 111
Q ss_pred -hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-----ccccccCCCCCCCCCH
Q 001228 936 -ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-----LNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 936 -~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~LS~ 1009 (1119)
...++.+||++|++.+++.+||.|++.+...+. .......+.+.++++.++|.+ ..++. +..|||
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSg 430 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSE 430 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCH
Confidence 123456999999998889999999998753221 122223456788999999965 34554 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||+|||||+.+|+||||||||+|||+.+++.+++.|++++++ |.|||++||+++ .+...||++++|.+ |++++
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~ 508 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVK 508 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 56778999999975 78888
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
.|+.
T Consensus 509 ~g~~ 512 (520)
T TIGR03269 509 IGDP 512 (520)
T ss_pred ECCH
Confidence 8763
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=609.43 Aligned_cols=460 Identities=22% Similarity=0.293 Sum_probs=342.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998761 128999999998764321 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc-cccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 338 (1119)
+||+||+.|.......+.... . . +....++.+++.+||.+.. ++.+++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~- 141 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y----------N--------------AMYLRAKNLLRELQLDADNVTRPVGD- 141 (500)
T ss_pred CcHHHHHHhhccccccccccC------H----------H--------------HHHHHHHHHHHHcCCCCCcccCchhh-
Confidence 999999988543210000000 0 0 0012356789999998764 566776
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||+|++|+
T Consensus 142 ----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 142 ----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 47787777665 457889999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
+|++++.|+.+++.. .+ .
T Consensus 216 ~G~i~~~~~~~~~~~---------------~~-----------------------------~------------------ 233 (500)
T TIGR02633 216 DGQHVATKDMSTMSE---------------DD-----------------------------I------------------ 233 (500)
T ss_pred CCeEeeecCcccCCH---------------HH-----------------------------H------------------
Confidence 999987654321100 00 0
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
.. . +.
T Consensus 234 -----------------------------~~-~----------------------------~~----------------- 238 (500)
T TIGR02633 234 -----------------------------IT-M----------------------------MV----------------- 238 (500)
T ss_pred -----------------------------HH-H----------------------------Hh-----------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
+..
T Consensus 239 --------------------------------------------------------------------~~~--------- 241 (500)
T TIGR02633 239 --------------------------------------------------------------------GRE--------- 241 (500)
T ss_pred --------------------------------------------------------------------Ccc---------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
.
T Consensus 242 ---------------------------------------------------~---------------------------- 242 (500)
T TIGR02633 242 ---------------------------------------------------I---------------------------- 242 (500)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
.. . + .
T Consensus 243 -------~~---~------------~--------------------------------~--------------------- 247 (500)
T TIGR02633 243 -------TS---L------------Y--------------------------------P--------------------- 247 (500)
T ss_pred -------cc---c------------c--------------------------------c---------------------
Confidence 00 0 0 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
.. . . +. ....++++|+++.++. .++..+|+|+||+|++||++||
T Consensus 248 --------~~-~----~------~~-------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l 291 (500)
T TIGR02633 248 --------HE-P----H------EI-------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGV 291 (500)
T ss_pred --------cc-c----c------CC-------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEE
Confidence 00 0 0 00 0012456666543210 0123589999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHH--hhc
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAW--LRL 969 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~--l~~ 969 (1119)
+|+||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||+||+.+... +..
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~ 370 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF 370 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhcc
Confidence 999999999999999998652 147999999977532 23356799999996 47888999999987532 111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 970 SSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 970 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
..........+.+.++++.+++.+ ..++. +..||||||||++|||+|+.+|+||||||||+|||+.+++.+++.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 445 (500)
T TIGR02633 371 KMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445 (500)
T ss_pred CCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 001122333456889999999964 45665 347999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|++++++|.|||++|||++ ++...||++++|.+ |+++..++..
T Consensus 446 l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 446 INQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 9999888999999999985 57778999999975 7888877543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=609.13 Aligned_cols=452 Identities=22% Similarity=0.295 Sum_probs=342.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999886 999999998875322 23579999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++......+. .+.. +....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-----------------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-----------------VNRR--------------LLNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-----------------CCHH--------------HHHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999988532100000 0000 0012346688999998878888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 477887777665 478899999999999
Q ss_pred CeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhcC
Q 001228 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1119)
|+++..++..+. . + . ++..+
T Consensus 216 G~i~~~~~~~~~-----------------------~-~---~----------------~~~~~----------------- 235 (501)
T PRK11288 216 GRYVATFDDMAQ-----------------------V-D---R----------------DQLVQ----------------- 235 (501)
T ss_pred CEEEeecCcccc-----------------------C-C---H----------------HHHHH-----------------
Confidence 999854421000 0 0 0 00000
Q ss_pred CCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhHH
Q 001228 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1119)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~ 579 (1119)
. +.... .
T Consensus 236 -------------------------------~----------------------------~~~~~-----~--------- 242 (501)
T PRK11288 236 -------------------------------A----------------------------MVGRE-----I--------- 242 (501)
T ss_pred -------------------------------H----------------------------hcCCC-----c---------
Confidence 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHHH
Q 001228 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1119)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~~ 659 (1119)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCCc
Q 001228 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1119)
Q Consensus 660 l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1119)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccc
Q 001228 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1119)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1119)
.. . . .
T Consensus 243 ------~~---~-------------~-------------------------------~---------------------- 247 (501)
T PRK11288 243 ------GD---I-------------Y-------------------------------G---------------------- 247 (501)
T ss_pred ------cc---c-------------c-------------------------------c----------------------
Confidence 00 0 0 0
Q ss_pred cccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEE
Q 001228 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1119)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~ 899 (1119)
..+. +..+..++++|+++ ..+++|+||+|++||++||+
T Consensus 248 -------~~~~------------------~~~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~ii 285 (501)
T PRK11288 248 -------YRPR------------------PLGEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLF 285 (501)
T ss_pred -------cccc------------------CCCCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEE
Confidence 0000 00011345666542 13899999999999999999
Q ss_pred cCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCC---CCCCCCCHHHHHHHHHHhhcCC-
Q 001228 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSS- 971 (1119)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~---~~~~~~tv~e~l~~~~~l~~~~- 971 (1119)
||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+|+.||+.+........
T Consensus 286 G~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 363 (501)
T PRK11288 286 GLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA 363 (501)
T ss_pred cCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc
Confidence 9999999999999999865 458999999976532 22345799999996 3788899999998753211100
Q ss_pred C--ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 001228 972 D--VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1119)
Q Consensus 972 ~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~ 1048 (1119)
. ......++.+.++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..++++
T Consensus 364 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 438 (501)
T PRK11288 364 GCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV 438 (501)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0 01222335678899999994 5666664 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC
Q 001228 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095 (1119)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~ 1095 (1119)
|++++++|.|||++|||++ .+...||++++|.+ |++++.|+.++.
T Consensus 439 l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 439 IYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 9999888999999999985 57788999999975 789999877643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=598.99 Aligned_cols=450 Identities=20% Similarity=0.291 Sum_probs=340.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999886 999999999875432 13569999999988999
Q ss_pred CCHHHHHHHhhh-hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|... ..+.. .+.+ +....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF-------------------VDQD-------------KMYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccc-------------------cCHH-------------HHHHHHHHHHHHcCCCCCccCchhh-
Confidence 999999987531 10000 0000 0012356688999999888888877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 477877776654 57889999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
+|+++..|+.+++.. + +..+
T Consensus 209 ~G~i~~~~~~~~~~~----------------~----------------------------~~~~---------------- 228 (491)
T PRK10982 209 DGQWIATQPLAGLTM----------------D----------------------------KIIA---------------- 228 (491)
T ss_pred CCEEEeecChhhCCH----------------H----------------------------HHHH----------------
Confidence 999998776543200 0 0000
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
. ++...
T Consensus 229 --------------------------------~----------------------------~~~~~-------------- 234 (491)
T PRK10982 229 --------------------------------M----------------------------MVGRS-------------- 234 (491)
T ss_pred --------------------------------H----------------------------HhCCC--------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
+
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
. . .+ .
T Consensus 236 -------~----~-----------~~--------------------------------~--------------------- 240 (491)
T PRK10982 236 -------T----Q-----------RF--------------------------------P--------------------- 240 (491)
T ss_pred -------c----c-----------cc--------------------------------c---------------------
Confidence 0 0 00 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
. . .. . + .+..+.++|+++.. ..+|+||||+|++||++||
T Consensus 241 --------~-~-----~~-----~------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l 279 (491)
T PRK10982 241 --------D-K-----EN-----K------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGI 279 (491)
T ss_pred --------c-c-----cC-----C------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEE
Confidence 0 0 00 0 0 01135677776521 2489999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC---CCCCCCHHHHHHHHHH--hhc
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI---HSPYVTVYESLLYSAW--LRL 969 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~--l~~ 969 (1119)
+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +++.+|+.+|..+... ...
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN 357 (491)
T ss_pred ecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcc
Confidence 99999999999999999876 458999999977532 123456899999853 5778888877433211 100
Q ss_pred CCC-ccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001228 970 SSD-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1119)
Q Consensus 970 ~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1047 (1119)
... .......+.+.++++.+++. +..++. +.+|||||||||+|||+|+.+|+||||||||+|||+.++..+++
T Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~ 432 (491)
T PRK10982 358 KVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432 (491)
T ss_pred cccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence 001 11223345678899999985 445655 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
.|+++.++|.|||++||+++ ++...||++++|.+ |+++..++..
T Consensus 433 ~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 433 LIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99999888999999999986 57788999999975 7888776554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=588.54 Aligned_cols=447 Identities=19% Similarity=0.288 Sum_probs=327.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCC--C-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH--H- 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~--~- 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 35999999999999999999999999999999999999886 999999997654322 12458999998542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 258 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
..+||+|++.+... ....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhh
Confidence 14677777643100 0113456889999998889
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. +.|+|++.|++ .++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~-~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRF-DEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHhhCC
Confidence 98887 9999999999999999999999999999999999999999999998764 77888877664 57889999
Q ss_pred eEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhh
Q 001228 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQ 492 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 492 (1119)
+|++|++|+++++|+++++... +.+....
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~------------------------------------ 232 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVAQLA------------------------------------ 232 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhhhhh------------------------------------
Confidence 9999999999999887654210 0000000
Q ss_pred HHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 001228 493 IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1119)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~ 572 (1119)
.. + ....
T Consensus 233 ------------------------------------~~------~-------------------------------~~~~ 239 (490)
T PRK10938 233 ------------------------------------HS------E-------------------------------QLEG 239 (490)
T ss_pred ------------------------------------hh------h-------------------------------ccCc
Confidence 00 0 0000
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchH
Q 001228 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1119)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHH
Q 001228 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1119)
Q Consensus 653 ~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1119)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccch
Q 001228 733 NEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812 (1119)
Q Consensus 733 nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~ 812 (1119)
.. .+.. ...
T Consensus 240 -------~~--~~~~--~~~------------------------------------------------------------ 248 (490)
T PRK10938 240 -------VQ--LPEP--DEP------------------------------------------------------------ 248 (490)
T ss_pred -------cc--cCcc--ccc------------------------------------------------------------
Confidence 00 0000 000
Q ss_pred hhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeC
Q 001228 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRP 892 (1119)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~ 892 (1119)
... .. . +.....++++|+++.++ ++.+|+|+||+|++
T Consensus 249 --------------~~~-----~~-----~------~~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~ 285 (490)
T PRK10938 249 --------------SAR-----HA-----L------PANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNP 285 (490)
T ss_pred --------------ccc-----cc-----c------CCCCceEEEeceEEEEC-------------CeeEEeeceEEEcC
Confidence 000 00 0 00011356777765432 24599999999999
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCC--CCCHHHHHHHHHH
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSP--YVTVYESLLYSAW 966 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~--~~tv~e~l~~~~~ 966 (1119)
||++||+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+++ ..++++++.+...
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 999999999999999999999996431 147999999976421 123567999999876543 3567666654321
Q ss_pred h--hcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 967 L--RLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 967 l--~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
- ....... ....+.++++++.+++.+ ..++. +..|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 365 DSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred cccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 0 0001111 223456889999999986 66665 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CeEEEEecCccHHHHH-hhceEeEEecCcEEEEe
Q 001228 1044 IVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1044 ~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~l~l~~gG~v~~~ 1089 (1119)
.+++.|++++++| .|||++||+++ ++.+ .+|++++|.+ |++++.
T Consensus 439 ~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 439 LVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999999998776 46999999975 3544 4799999975 666554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=573.71 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=162.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 36777776543 23469999999999999999999999999999999999865 4589999853 2
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gq 1011 (1119)
..+||++|++ .+++.+||.|++.+....... ... ...+.++++.+++.+ ..++. +.+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 677889999999876422211 111 123457899999864 44555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Eec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g 1090 (1119)
|||++|||+|+.+|++|||||||+|||+.++..+++.|+++. | |||++||+++ .+...||++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5677899999998767765 566
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 527 ~~ 528 (556)
T PRK11819 527 NF 528 (556)
T ss_pred CH
Confidence 53
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=573.59 Aligned_cols=202 Identities=21% Similarity=0.295 Sum_probs=161.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECC-c-
Confidence 36777776543 23469999999999999999999999999999999999865 4589999854 2
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gq 1011 (1119)
..+||++|++ .+++.+||.|++.+...... .... ...+.++++.+++.+ ..++. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1589999986 47788999999987642211 1111 123457899999864 44555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Eec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g 1090 (1119)
||||+|||+|+.+|+||||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 4667899999998766765 555
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 525 ~~ 526 (552)
T TIGR03719 525 NY 526 (552)
T ss_pred CH
Confidence 53
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-59 Score=505.30 Aligned_cols=471 Identities=24% Similarity=0.330 Sum_probs=355.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCCcc-------cceEEEecc
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVP-------QRTCAYISQ 252 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q 252 (1119)
....++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|+++-.... ...|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 356799999999999999999999999999999999999876 34568999999998754432 146999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 253 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
++ .+.|-.|+...+.-..++... +++ ...+.++-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~------------------------~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSR------------------------AAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccH------------------------HHHHHHHHHHHHHcCCCch
Confidence 97 567777888877655554311 111 1122345668888899765
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.... +.+...|||||||||.||.||+.+|++|+-||||++||...+.+|.++|+++.+++|..+++.+ |...-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT-HDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT-HDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe-ccHHHHHHh
Confidence 4322 2445669999999999999999999999999999999999999999999999988887766655 556678899
Q ss_pred cCeEEEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhh
Q 001228 411 FDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 490 (1119)
+|+|+||.+|+++++|+.+++.. .|.+ ||
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pY------------------ 253 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PY------------------ 253 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hH------------------
Confidence 99999999999999999876621 1211 00
Q ss_pred hhHHhhhcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 001228 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDM 570 (1119)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~ 570 (1119)
. |..+
T Consensus 254 -------------------------------------T-r~Ll------------------------------------- 258 (534)
T COG4172 254 -------------------------------------T-RKLL------------------------------------- 258 (534)
T ss_pred -------------------------------------H-HHHH-------------------------------------
Confidence 0 0000
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcc
Q 001228 571 NGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (1119)
Q Consensus 571 ~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~ 650 (1119)
T Consensus 259 -------------------------------------------------------------------------------- 258 (534)
T COG4172 259 -------------------------------------------------------------------------------- 258 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHH
Q 001228 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (1119)
Q Consensus 651 ~~~~f~~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 730 (1119)
.
T Consensus 259 --------------------------~----------------------------------------------------- 259 (534)
T COG4172 259 --------------------------A----------------------------------------------------- 259 (534)
T ss_pred --------------------------h-----------------------------------------------------
Confidence 0
Q ss_pred HHHHhcCCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeecc
Q 001228 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEED 810 (1119)
Q Consensus 731 ~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~ 810 (1119)
..+.+.....
T Consensus 260 -----------aeP~g~~~p~----------------------------------------------------------- 269 (534)
T COG4172 260 -----------AEPSGDPPPL----------------------------------------------------------- 269 (534)
T ss_pred -----------cCCCCCCCCC-----------------------------------------------------------
Confidence 0000000000
Q ss_pred chhhhcccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeee
Q 001228 811 GEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVF 890 (1119)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i 890 (1119)
.+..|.-++.+|+.-.++.+..+ ..-..+...++++||+++
T Consensus 270 -------------------------------------~~~~~~ll~~~~v~v~f~i~~g~--~~r~~~~~~AVd~isl~L 310 (534)
T COG4172 270 -------------------------------------PEDAPVLLEVEDLRVWFPIKGGF--LRRTVDHLRAVDGISLTL 310 (534)
T ss_pred -------------------------------------CCCCCceEEecceEEEEecCCcc--ccccchheEEeccceeEe
Confidence 00001111222221111111000 000112346899999999
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCC--CCCCCCHHHHHH
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDI--HSPYVTVYESLL 962 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~--~~~~~tv~e~l~ 962 (1119)
++||-+||||.||||||||=.+|.++.. .+|+|.++|.++.. ..+++.+-.|+|||. +.|.+||.+.+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 9999999999999999999999999775 35999999998753 245678999999986 779999999998
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
-+..+..+ ..+..++++.+.++|+.+||++- .+++ +.++|||||||++|||||+.+|++++||||||.||..-
T Consensus 388 EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 388 EGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 87766543 45677888999999999999763 4444 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1042 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++.|.++++++.+ .|.+-++||||+. -+-..||++++|+ +|+|++.|+..
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~~ 512 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPTE 512 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCHH
Confidence 9999999999975 4999999999975 4667899999997 58999999853
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-59 Score=567.22 Aligned_cols=198 Identities=19% Similarity=0.283 Sum_probs=161.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 467788775442 3459999999999999999999999999999999999865 45799999873
Q ss_pred ChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~G 1010 (1119)
+.+||++|++. +.+.+|+.|++.+.. .. . ..++.+.++++.+++. +..++. +.+||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 46999999874 456799999986421 11 1 1134577899999984 555665 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Ee
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~ 1089 (1119)
||||++|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||++||+++ .+...||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999986 459999999975 56677999999986 5665 77
Q ss_pred cCC
Q 001228 1090 GPL 1092 (1119)
Q Consensus 1090 g~~ 1092 (1119)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-58 Score=555.63 Aligned_cols=200 Identities=22% Similarity=0.250 Sum_probs=163.3
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+|+||||||||+++|+|... +.+|+|.++ ..++|++|++.+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 5899999999999999999999999999999999875 457999875 1489999998888899999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.+.... . . . ...+.++++.+++.+..++. +..|||||||||+||++|+.+|+||||||||+|||+.+
T Consensus 422 ~~~~~~--~-~--~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDD--L-G--S---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhh--c-C--h---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 874211 1 1 1 12467899999998777776 45799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC---hHHHHHHhhhhcCCCc
Q 001228 1042 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE---SHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~---~~~l~~~f~~~i~g~~ 1111 (1119)
+..++++|++++++ |+|||++|||++ .+...+|++++|. |++...|..... .+.+..+++ .+ |+.
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~-~~-~i~ 557 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLK-EL-GIT 557 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHH-Hc-CCE
Confidence 99999999999764 899999999975 4667899999995 367666664332 233445555 44 443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-56 Score=547.76 Aligned_cols=197 Identities=22% Similarity=0.332 Sum_probs=157.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+|+||+|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 36777776543 23469999999999999999999999999999999999865 45799998641
Q ss_pred ChhhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~G 1010 (1119)
..+||++|+. .+.+..|+.+++.. .. .......+.++++.+++.. ..++. +..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHH
Confidence 2589999974 24455677776531 11 0112345788999999853 45555 3579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-Ee
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~ 1089 (1119)
|||||+||++|+.+|+||||||||+|||+.+...+.++|+++ . .|||+||||+. .+...||++++|.+ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999975 46678999999975 6775 77
Q ss_pred cCC
Q 001228 1090 GPL 1092 (1119)
Q Consensus 1090 g~~ 1092 (1119)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=550.40 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=160.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 36777776543 23469999999999999999999999999999999999865 45799988 4321
Q ss_pred ChhhhcceEEEEccCC-CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHH
Q 001228 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~-~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.+||++|++ .+++.+||.|++.+..... ... .....+.++++.+++. +..++. +..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHH
Confidence 489999985 5778899999998753210 111 1123467888888885 345555 35799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-cCcEEEEec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-RGGRVIYAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-~gG~v~~~g 1090 (1119)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||+||||.+ .+...||+++++. +|..+.|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999886 459999999975 4667899999997 444445666
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-56 Score=508.80 Aligned_cols=462 Identities=24% Similarity=0.360 Sum_probs=352.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1119)
...++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 4578999999999999999999999999999999999999998 99999999987655442 4699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|+|||.|||.++...... ... +|. .........+|+.+|+....++.|++
T Consensus 96 p~LsVaeNifLgre~~~~---~g~------------------id~---------~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRR---FGL------------------IDR---------KAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccC---CCc------------------cCH---------HHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 999999999775433210 000 000 01122356789999997669999998
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||+||||-|.||+|+..+++|++|||||+.|+...+..+.+.++++.. .|.++|.. .|-..|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~I-SHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYI-SHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-cCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999975 46665554 56788999999999999
Q ss_pred cCCeEEEEcCh-hHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhh
Q 001228 418 SEGQIVYQGPR-DNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASD 496 (1119)
Q Consensus 418 ~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 496 (1119)
.+|+.+..++. .+.-. ++.
T Consensus 219 RDG~~v~~~~~~~~~~~--------------------------------------------~~l---------------- 238 (500)
T COG1129 219 RDGRVVGTRPTAAETSE--------------------------------------------DEL---------------- 238 (500)
T ss_pred eCCEEeeecccccCCCH--------------------------------------------HHH----------------
Confidence 99999876552 21100 000
Q ss_pred hcCCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchh
Q 001228 497 LRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1119)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~ 576 (1119)
T Consensus 239 -------------------------------------------------------------------------------- 238 (500)
T COG1129 239 -------------------------------------------------------------------------------- 238 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHH
Q 001228 577 FGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656 (1119)
Q Consensus 577 ~g~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~ 656 (1119)
+-.|+|-
T Consensus 239 -----------------------------------------------------------------v~~MvGr-------- 245 (500)
T COG1129 239 -----------------------------------------------------------------VRLMVGR-------- 245 (500)
T ss_pred -----------------------------------------------------------------HHHhhCc--------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhc
Q 001228 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFL 736 (1119)
Q Consensus 657 ~~~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 736 (1119)
++.
T Consensus 246 -----------------------------------------------------------------------------~~~ 248 (500)
T COG1129 246 -----------------------------------------------------------------------------ELE 248 (500)
T ss_pred -----------------------------------------------------------------------------chh
Confidence 000
Q ss_pred CCccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhc
Q 001228 737 GGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRA 816 (1119)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 816 (1119)
..|.
T Consensus 249 -~~~~--------------------------------------------------------------------------- 252 (500)
T COG1129 249 -DLFP--------------------------------------------------------------------------- 252 (500)
T ss_pred -hhcc---------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEE
Q 001228 817 SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896 (1119)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~ 896 (1119)
. . ... ...+..+++++++. ...++||||++++||++
T Consensus 253 ----------~-~----------~~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIl 288 (500)
T COG1129 253 ----------E-P----------PEE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEIL 288 (500)
T ss_pred ----------c-c----------ccc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEE
Confidence 0 0 000 00112234445431 11588999999999999
Q ss_pred EEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC---CCCCCCHHHHHHHHHHhhc
Q 001228 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI---HSPYVTVYESLLYSAWLRL 969 (1119)
Q Consensus 897 ~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~l~~ 969 (1119)
||.|-=|||+|-|+.+|+|... ...|+|.++|.+... ...+..++|||.+.. ++..++|.+|+.++...+.
T Consensus 289 GiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 289 GIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred EEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 9999999999999999999654 357999999997532 345678999998754 6789999999988732221
Q ss_pred C-C-CccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 001228 970 S-S-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1119)
Q Consensus 970 ~-~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~ 1046 (1119)
. . -.+.....+.+++..+.+++.... +.. +.+||||.+||+.|||+|..+|+||||||||.|+|.-++.+|+
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy 441 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIY 441 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHH
Confidence 1 1 245556667789999999986432 232 5679999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC-CChHHHHHH
Q 001228 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG-HESHKLIEY 1102 (1119)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~-~~~~~l~~~ 1102 (1119)
++|++++++|++||++|-++. ++...|||+++|. +|+++..=+-. .+.+++..+
T Consensus 442 ~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~~~tee~im~~ 496 (500)
T COG1129 442 RLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDREEATEEAIMAA 496 (500)
T ss_pred HHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccccCCHHHHHHH
Confidence 999999999999999999985 7888999999997 58887644433 344555443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=518.81 Aligned_cols=199 Identities=19% Similarity=0.246 Sum_probs=154.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 467888876542 12358999999999999999999999999999999999865 45799988652
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqr 1012 (1119)
..+||++|++. +.+++.++..+....... ... .+.+.++++.+++.+ ..++. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35999999853 345565654332111111 111 234778999999963 44554 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-EecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g~ 1091 (1119)
|||+|||+|+.+|++|||||||+|||+.+...+.+.+++. . .|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888775 3 49999999975 46678999999975 7776 6665
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=498.28 Aligned_cols=222 Identities=28% Similarity=0.332 Sum_probs=174.4
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..+++|+|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-.++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3567999999999999999999999999999999999999987 99998854 236999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChh---HHHH-HHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE---IDAF-MKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|.+.+.-+.. ..++...++...... .++++ .+.. .......++..+..+..++..||+... ++.+++
T Consensus 83 v~~~v~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFG-----ELRELLAELEEAYAL---LADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhH-----HHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 9999965432 222222222221111 11111 1111 112234556777888999999999987 899988
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||.||++|++|+.+|++|||||||++||..+..++-+.|+++ .| |+|++ .|.....-+.|++|+-+
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999999999999864 24 55554 56677888999999999
Q ss_pred cCCeE-EEEcChhHHHH
Q 001228 418 SEGQI-VYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~i-v~~G~~~~~~~ 433 (1119)
+.|++ .|.|.++...+
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 99987 67888776543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=458.28 Aligned_cols=463 Identities=22% Similarity=0.318 Sum_probs=354.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 258 (1119)
...+++|||+.|++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|++..-..+. ..||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 577999999999999999999999999999999999999998 99999999988665543 46999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
++||.||+..+..-.. +.+. +. ......++.+.+.+||+-..|.+|++
T Consensus 93 ~lTV~ENiiLg~e~~~-~~~~-------------------~~-----------~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSK-GGLI-------------------DR-----------RQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccc-cccc-------------------CH-----------HHHHHHHHHHHHHhCCCCCccceeec-
Confidence 9999999988654210 0000 00 01123467789999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
||=||||||.|-++|+.+|++|+|||||+-|-|..+.++.+.|+++++ .|+|+|+.+ |-..|+.++||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT-HKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT-HKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999987 478877765 45679999999999999
Q ss_pred CCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhhhcCCCCCCCChhHHHHHHhhchhhhhHHhhhc
Q 001228 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1119)
.|+++-.-++ . ++ .+.++.++
T Consensus 215 ~Gkvvgt~~~--~-----------------~~------------------------~t~~ela~---------------- 235 (501)
T COG3845 215 RGKVVGTVDP--V-----------------AE------------------------TTEEELAE---------------- 235 (501)
T ss_pred CCeEEeeecC--C-----------------CC------------------------CCHHHHHH----------------
Confidence 9998643210 0 00 00000000
Q ss_pred CCCCcccCCCCccccccccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcchhhH
Q 001228 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1119)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g 578 (1119)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCccchhHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCcchHHHHHHH
Q 001228 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1119)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~ker~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f~~~ 658 (1119)
.|+|-
T Consensus 236 -----------------------------------------------------------------lMvG~---------- 240 (501)
T COG3845 236 -----------------------------------------------------------------LMVGR---------- 240 (501)
T ss_pred -----------------------------------------------------------------HhcCC----------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHhHcHHHHHHHHHHHHHhcCC
Q 001228 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1119)
Q Consensus 659 ~l~~~~~~~~~~~~~~~i~a~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1119)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccchhhHHhhhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc
Q 001228 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1119)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1119)
.+. .
T Consensus 241 ------------------~v~----~------------------------------------------------------ 244 (501)
T COG3845 241 ------------------EVV----L------------------------------------------------------ 244 (501)
T ss_pred ------------------ccc----c------------------------------------------------------
Confidence 000 0
Q ss_pred ccccchhhhhcccccccccccccccCcccccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEE
Q 001228 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1119)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l 898 (1119)
..... . . .| .+..++++|++-..+ .....+++|||++++||++||
T Consensus 245 --------~~~~~-------~--~-----~p-g~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGI 289 (501)
T COG3845 245 --------RVVKP-------P--S-----TP-GEVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGI 289 (501)
T ss_pred --------ccccC-------C--C-----CC-CCeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEE
Confidence 00000 0 0 00 012345555542111 113579999999999999999
Q ss_pred EcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC----Chhh-hcceEEEEccCCC---CCCCCCHHHHHHHHHHhh--
Q 001228 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----NQET-FARVSGYCEQNDI---HSPYVTVYESLLYSAWLR-- 968 (1119)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~----~~~~-~~~~~gy~~q~~~---~~~~~tv~e~l~~~~~l~-- 968 (1119)
.|..|-|-+.|+.+|+|..+. ..|+|.++|.++ +... .+..++|+|.+.. +.+.+|+.||+.+...-+
T Consensus 290 AGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~ 367 (501)
T COG3845 290 AGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKP 367 (501)
T ss_pred EecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccc
Confidence 999999999999999998652 359999999986 2222 3356999999874 568899999998765321
Q ss_pred --cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 001228 969 --LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1119)
Q Consensus 969 --~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~ 1046 (1119)
...-.......+.+.++++.+++....... .+..||||++||+-+||+|.++|++|++.+||.|||..+.+.|.
T Consensus 368 ~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~ 443 (501)
T COG3845 368 FSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHH
Confidence 111244566778889999999886322111 14579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHH
Q 001228 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKL 1099 (1119)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l 1099 (1119)
+.|.+.+++|++|++++-+++ +++..+|++.+|.+ |+++...+... +.+++
T Consensus 444 ~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~~t~~~i 495 (501)
T COG3845 444 ERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEEATREEI 495 (501)
T ss_pred HHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-CceecccccccCCHHHH
Confidence 999999999999999999987 79999999999975 89988777653 33443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=375.34 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=185.1
Q ss_pred ccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----hhhhcceEEEEcc
Q 001228 872 TEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETFARVSGYCEQ 947 (1119)
Q Consensus 872 ~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----~~~~~~~~gy~~q 947 (1119)
++.+.++...+|+|||++|++||+++|+|||||||||||+||.|+.. +.+|+|.++|.++. ....|+.+|+|+|
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ 84 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecc
Confidence 33445667889999999999999999999999999999999999877 46899999996542 3457888999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+..+||++||.||+.++...- ...+.++.++.+.++|+.+||.+.+|.++ ..||||||||++|||||+.+|++
T Consensus 85 ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred cccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCCE
Confidence 999999999999999875432 23456777788999999999999999884 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|||||.|||+...++.+.+++++++|.|+||+||++.. ..+.+||++.|+ +|++++.|+..
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p~ 221 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPPE 221 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCHH
Confidence 99999999999999999999999999999999999999753 566789999997 58888888753
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=397.43 Aligned_cols=205 Identities=20% Similarity=0.220 Sum_probs=156.1
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
|..+.|+|++|.++- +..++++++|.|.+++.+++||||||||||||+++.|... +..|.+.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 345788888875542 2258999999999999999999999999999999999766 34676643222
Q ss_pred cCChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 932 PKNQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.++++..|... +.-..++.|+++=-. .+ ....+.+..++..+||....+... +++||+
T Consensus 453 --------~~~~~y~Qh~~e~ldl~~s~le~~~~~~-----~~---~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~ 512 (614)
T KOG0927|consen 453 --------NKLPRYNQHLAEQLDLDKSSLEFMMPKF-----PD---EKELEEMRSILGRFGLTGDAQVVP----MSQLSD 512 (614)
T ss_pred --------ccchhhhhhhHhhcCcchhHHHHHHHhc-----cc---cchHHHHHHHHHHhCCCccccccc----hhhccc
Confidence 22344444322 223456666553210 11 234556788999999985433322 568999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||+||.+|+.++..|.||+|||||+|||..+...+-++|.+. ..+||++|||.. -+...++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999886 468999999975 477788999999998888999
Q ss_pred cCCCC
Q 001228 1090 GPLGH 1094 (1119)
Q Consensus 1090 g~~~~ 1094 (1119)
|....
T Consensus 589 G~i~~ 593 (614)
T KOG0927|consen 589 GDIEI 593 (614)
T ss_pred ccHHH
Confidence 98643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=438.03 Aligned_cols=251 Identities=43% Similarity=0.771 Sum_probs=228.6
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEEC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKIS 929 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~ 929 (1119)
.+..+.|+|+++..+.+.. ..+++|+|||+.++|||++||||||||||||||++|+|+..+| ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3456889998876654321 3468999999999999999999999999999999999998764 688999999
Q ss_pred CccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 930 GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 930 g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
|++.....+++.+|||+|+|.++|.+||+|++.|++.+|.+.....+++++.++++++.++|.+++|..+|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999887789999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||||+||.+|+.||+||||||||||||+.++..+.++|++++++|+||||++|||+.+++..||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 699999
Q ss_pred cCCCCChHHHHHHhhhhcCCCccCCCCC
Q 001228 1090 GPLGHESHKLIEYFEVSIPFFPALSVDG 1117 (1119)
Q Consensus 1090 g~~~~~~~~l~~~f~~~i~g~~~~~~~~ 1117 (1119)
|+. +++.+||+. -|-| ||+..
T Consensus 253 G~~----~~~~~ff~~--~G~~-~P~~~ 273 (613)
T KOG0061|consen 253 GSP----RELLEFFSS--LGFP-CPELE 273 (613)
T ss_pred cCH----HHHHHHHHh--CCCC-CCCcC
Confidence 986 578999983 5666 66654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=362.09 Aligned_cols=222 Identities=26% Similarity=0.417 Sum_probs=188.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----CcccceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----~~~~~~~~yv~Q~d~~~ 257 (1119)
....+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|+++.. ...++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3567999999999999999999999999999999999999887 9999999976532 12467899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|++||.||+.++-..-. .+++ .+.+.....+|+.+||.+.+|.+.+.
T Consensus 90 PHlTvleNv~lap~~v~---------~~~k------------------------~eA~~~A~~lL~~VGL~~ka~~yP~q 136 (240)
T COG1126 90 PHLTVLENVTLAPVKVK---------KLSK------------------------AEAREKALELLEKVGLADKADAYPAQ 136 (240)
T ss_pred ccchHHHHHHhhhHHHc---------CCCH------------------------HHHHHHHHHHHHHcCchhhhhhCccc
Confidence 99999999988643110 0011 11223456789999999999999887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||+.+|+++|+|||||+|||....++.+.++++++. |.|.+|++|. .....+.+|||+.|
T Consensus 137 -----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHE-M~FAr~VadrviFm 209 (240)
T COG1126 137 -----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHE-MGFAREVADRVIFM 209 (240)
T ss_pred -----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEech-hHHHHHhhheEEEe
Confidence 9999999999999999999999999999999999999999999999984 7888888765 45788999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHh
Q 001228 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (1119)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 455766666777654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=377.75 Aligned_cols=221 Identities=29% Similarity=0.432 Sum_probs=191.1
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIH 951 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~ 951 (1119)
++|+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++. ..++++.++|+||.+..
T Consensus 10 ~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~ 87 (258)
T COG1120 10 FGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSA 87 (258)
T ss_pred EEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCC
Confidence 34556789999999999999999999999999999999999776 45899999998864 45688999999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+.+||+|.+.++..-+... ....++..+.++++|+.+++.+++++.+ ++||||||||+.|||||+++|+||+|
T Consensus 88 ~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 88 PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCCCEEEe
Confidence 88999999999875432221 1223444557999999999999999884 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|||||+||...+.+++++++++. ++|+|||++.||++. ...+||++++|++ |++++.|++.+ ..+.+.+.|.
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~evlT~e~l~~Vyg 237 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEEVLTEENLREVYG 237 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcchhcCHHHHHHHhC
Confidence 99999999999999999999998 459999999999874 7788999999975 89999998764 5677888887
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=359.43 Aligned_cols=226 Identities=27% Similarity=0.378 Sum_probs=195.9
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEcc
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQ 947 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q 947 (1119)
.++++.+.+++|||++|++||+++|||+||+||||||++|.|+.. +.+|+|.++|.++.+ ...++++|+++|
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ 92 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQ 92 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEee
Confidence 345677889999999999999999999999999999999999887 458999999998643 245678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
+-.+|..+||+||+.|.. |.....+.+..++.+..-|+++||... .+.. +++|||||+||++||||++.+|+
T Consensus 93 ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 93 QGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred ccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhcCCC
Confidence 999999999999999874 344456677777888888999999877 6666 46899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC----ChHHHHH
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH----ESHKLIE 1101 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~----~~~~l~~ 1101 (1119)
|||+||||+||||.++..+-++|+++.++ |.|+++||||.+ .+...||++++|.+ |+|+..|+..+ +..-+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~v~q 243 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQ 243 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHHHHH
Confidence 99999999999999999999999999876 999999999986 68889999999975 89999999764 2234888
Q ss_pred HhhhhcCCCc
Q 001228 1102 YFEVSIPFFP 1111 (1119)
Q Consensus 1102 ~f~~~i~g~~ 1111 (1119)
||. ++++=|
T Consensus 244 f~~-G~~~gp 252 (263)
T COG1127 244 FFN-GIRDGP 252 (263)
T ss_pred Hhc-CCCCCc
Confidence 888 665544
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=369.47 Aligned_cols=228 Identities=28% Similarity=0.419 Sum_probs=189.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++++++ +..+|+||||+|++|++++|+||||||||||+++|+|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 467777776543 2259999999999999999999999999999999999766 4689999999876
Q ss_pred ChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.+..-+.++|||||... ....+||+|-+..+...+.. .....+..++.++++|+.+|+.+++++.++ +||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 55444568999999653 23458999999887433321 111223446789999999999999999865 69999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+||+.|||||+++|++|+|||||+|+|+.++..|+++|++++++|+|||+|+||++ .+...||+++.|. +++.+.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 5888999999996 5799999
Q ss_pred CCCC--ChHHHHHHhh
Q 001228 1091 PLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1091 ~~~~--~~~~l~~~f~ 1104 (1119)
+..+ ..+++...|.
T Consensus 221 ~~~~~~~~~~l~~~~g 236 (254)
T COG1121 221 PPEEVLTEENLEKAFG 236 (254)
T ss_pred ChhhccCHHHHHHHhC
Confidence 9865 3455766666
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=370.00 Aligned_cols=203 Identities=27% Similarity=0.357 Sum_probs=182.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~ 952 (1119)
...+|+|||++|++||++||+|+||||||||++++.++.. +.+|.|.++|.++.. ..+|+.+|+++|++.++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 3579999999999999999999999999999999999877 468999999976532 34678899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
...||+||+.|+..+.. .++++..+++.++++.+||.+..+++ +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999987764 55778889999999999999998888 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||.|||++.+.|.++|+++.++ |.|||+|||+++ -+...||++.+|++ |++++.|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999999655 999999999975 36678999999974 8999999865
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=361.51 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=174.4
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++...+|+|||++|.+||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++. .....+|||+|++.++|..|
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 344679999999999999999999999999999999999887 45899999998863 23467999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.|+...+. ....+..+.+.++++.+||.++.++. +.+||||||||++|||||+.+|+||+||||+++
T Consensus 89 v~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 89 VLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred HHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 9999999876653 34455666899999999999999998 458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-cEE
Q 001228 1037 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GRV 1086 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g-G~v 1086 (1119)
||+.++..+++.+.++.+ +++|||+||||.+ +....+|||++|.++ |+|
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 999999999999999874 5899999999986 677789999999864 444
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=383.48 Aligned_cols=212 Identities=32% Similarity=0.474 Sum_probs=186.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1119)
.+.+|+|||++|++|++++|+|||||||||||++|+|.+.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 478999999999999999999999999999999999999996 99999999887653 3457899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.|.+++++.... .....++++++.+||++..++.+++
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~~--- 136 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKVRT--- 136 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcchhh---
Confidence 999999999988764210 0122467899999999866677765
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||+||||||+||.||+++|++|||||||+||||.++.++++.|+++++..+.|+++++|++ .++..+||+|++|++|
T Consensus 137 --lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G 213 (293)
T COG1131 137 --LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDG 213 (293)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986556888877665 5899999999999999
Q ss_pred eEEEEcChhHHHHHHHh
Q 001228 421 QIVYQGPRDNVLEFFEH 437 (1119)
Q Consensus 421 ~iv~~G~~~~~~~~f~~ 437 (1119)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=382.78 Aligned_cols=207 Identities=31% Similarity=0.448 Sum_probs=183.2
Q ss_pred ccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCC
Q 001228 874 GVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDI 950 (1119)
Q Consensus 874 ~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~ 950 (1119)
.+.++ ++.+|+||||+|++|+++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||+||++.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 34455 5789999999999999999999999999999999999877 368999999987654 466788999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||+|++.|.+.++.... ....+.++++++.++|.+..++. +++||+||||||.||+||+.+|+||||
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred CCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999886532 34556799999999999855544 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+++.|++++++| +||+++||+++ ++...||++++|.+ |++++.|+.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 99999999999999999999999887 89999999986 67777999999975 899999965
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=354.37 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=183.1
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~ 952 (1119)
.|.++.+++|+|++|++||++.++|||||||||+|++|.++.+ +.+|+|.++|.++.. ..+||.+||+-|+-.+|
T Consensus 10 ~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF 87 (309)
T COG1125 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF 87 (309)
T ss_pred hcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccC
Confidence 3456789999999999999999999999999999999999887 468999999998754 56889999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
|++||.||+.+-..+. ..++++.+++++|+|++++|.+ +.+++ +++|||||+||+.+||||+++|+||+|
T Consensus 88 Ph~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 88 PHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred CCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEee
Confidence 9999999998765553 3456777888999999999975 77777 568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||++.|||-++..+++.++++.++ |+|||++|||.+ +.+..+|++.+|+ +|+++-.+++.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 9999999999999999999999755 999999999986 6888999999997 57887777643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=353.07 Aligned_cols=218 Identities=29% Similarity=0.395 Sum_probs=185.7
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~ 951 (1119)
+++++|+||||+|++||+++|+|+|||||||||++|.|+.. +..|+|.++|.++.. ..+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 56789999999999999999999999999999999999766 458999999976532 3457789999999999
Q ss_pred CCCCCHHHHHHHHHH-----hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 952 SPYVTVYESLLYSAW-----LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~-----l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
.+.++|.+|++.+.. ++.......++.+..+-++|+.+|+.+.+-+.. ++|||||+|||+|||||+++|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHHHHHHHhcCCC
Confidence 999999999987642 222223445566677889999999988877764 4799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHHHHHhh
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKLIEYFE 1104 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l~~~f~ 1104 (1119)
||+.|||+++|||.+++.||+.|+++.+ .|.|||++.|+.++ ..++|||++-|+ .|+|+|+||..+ +.+.+.+.|.
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASELTDEALDEIYG 245 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhhhhHHHHHHHhc
Confidence 9999999999999999999999999974 59999999999764 567899999997 589999999865 3344666666
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=380.57 Aligned_cols=217 Identities=29% Similarity=0.414 Sum_probs=194.0
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc-ceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...++ |.+|+|+|+..+||+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999997 99999999999987764 78999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
||.|+.+.++.. . .+...+++++.+.|+|++..|++... ||
T Consensus 95 Niaf~Lk~~~~~--------------------k--------------~ei~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVP--------------------K--------------AEIDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCc--------------------h--------------HHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999998776431 1 11234678899999999999999876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||++||||+.+|+++|||||+|.||+..+.++...++++.+..+.|+|..+|. ..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD-q~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD-QVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC-HHHHHhhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999999999988888777777654 569999999999999999999
Q ss_pred EcChhHHHHHHHhcCCCCCCCCChhHHHH
Q 001228 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (1119)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (1119)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 44577777777764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=413.83 Aligned_cols=255 Identities=33% Similarity=0.598 Sum_probs=216.0
Q ss_pred CceeEEeccceeeeccc----------------cccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 852 PLSLTFDNMSYFVDMPA----------------EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~----------------~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+..+.|.++.|.++... ..++..+.++++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 56789999999876432 12233445566789999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc
Q 001228 916 RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995 (1119)
Q Consensus 916 ~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 995 (1119)
+..++..+|+|.+||.+... ..++.+||++|++.+++.+||+|++.|.+.++.+.....+++.+.++++++.++|.+..
T Consensus 117 ~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 87644468999999988653 33466999999999999999999999987766443444455667789999999999988
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 996 ~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
|..+|...+.+||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++.+.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 88877666778999999999999999999999999999999999999999999999988899999999999866889999
Q ss_pred eEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCC
Q 001228 1076 ELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSV 1115 (1119)
Q Consensus 1076 ~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~ 1115 (1119)
++++|. +|++++.|+. +++.+||+ ++ |.+ ||+
T Consensus 276 ~iilL~-~G~iv~~G~~----~~~~~~f~-~~-G~~-~P~ 307 (659)
T PLN03211 276 SVLVLS-EGRCLFFGKG----SDAMAYFE-SV-GFS-PSF 307 (659)
T ss_pred eEEEec-CCcEEEECCH----HHHHHHHH-HC-CCC-CCC
Confidence 999997 4799999985 57999999 66 443 443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=343.30 Aligned_cols=213 Identities=30% Similarity=0.394 Sum_probs=189.4
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC--hhhhcceEEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN--QETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~--~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++++||||+++.||++||+|+|||||||+|++|+++.. +.+|.|.++|.+.. ....++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 49999999999999999999999999999999999877 45899999999864 345678999999888899999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.|.+.+. +....+.+++++++.+.++|.++.|+.++ +||.|||||++|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999876 44566777889999999999999999865 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-----ChHHHHHHhhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-----ESHKLIEYFEV 1105 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-----~~~~l~~~f~~ 1105 (1119)
..+...+.+.++++..+|++||++||.++ ++...||+++++.+ |++++.|+... ..+++.+.|-.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~l~~r~~~~~le~~f~~ 235 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEALDARTVLRNLEEIFAF 235 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHHHHHHHhhcCHHHHHHH
Confidence 99999999999999988999999999985 67779999999975 78999998653 23346666653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=361.16 Aligned_cols=224 Identities=27% Similarity=0.365 Sum_probs=195.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDL 255 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 255 (1119)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|+++.... .++.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999997 999999998876654 2578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++...||.||+.|..+..+.. + .+.+.++.++++.+||++.+|.+.
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------k------------------------~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------K------------------------AEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999987765421 1 123446788999999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+|||||+.+|+|||+|||||+|||.|+..|.+.|+++.+++|.|+++..|+. .-+-++||+|.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhhe
Confidence 87 9999999999999999999999999999999999999999999999999999988888775 46788999999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 001228 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~ 456 (1119)
+|++|+++++|+..++ |..|.+.-.-.|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 34466655566665544
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=353.38 Aligned_cols=193 Identities=30% Similarity=0.462 Sum_probs=167.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhh-cceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETF-ARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~-~~~~gy~~q~~~~~ 952 (1119)
..+|++|||+|++||+++|||||||||||||++|.|...+ .+|.+.++|.++.. ..+ ++.+||++|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998774 58999999976532 223 35699999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
|.+||.||+.++..+.... .....+.++++++.+||.+..+ +. +.+|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999877654322 2245667889999999986665 54 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|||.+||.++.+.|+++++++.++ |+|||++|||+ ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999755 99999999996 57889999999986 55
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=380.49 Aligned_cols=223 Identities=29% Similarity=0.418 Sum_probs=198.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1119)
...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 567999999999999999999999999999999999999998 9999999999998766 578999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.+... ++. +...+++++++.++|++.++.++.+
T Consensus 94 V~~NVafGLk~~~~~-------------------~~~--------------~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKL-------------------KKA--------------EIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCC-------------------CHH--------------HHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999987743211 001 1234578899999999999999887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||+|||++||||+.+|++||||||.|+||..-+.++...|+++.+..|.|.|..+|+ ..|.+.++|+|.+|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD-qeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD-QEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC-HHHHhhhccceEEccCCc
Confidence 999999999999999999999999999999999999999999999999888888877655 569999999999999999
Q ss_pred EEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001228 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1119)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (1119)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5668888888888654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=354.91 Aligned_cols=207 Identities=28% Similarity=0.437 Sum_probs=176.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccC---CCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH---DLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 261 (1119)
++|+|||+.+++|++++|+||||||||||+|+|.|.++|. +|+|.++|.+......+..||||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999997 99999999988776666789999995 45566 79
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+|.+..+..-+ ........+ +....++++|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~-----~g~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGK-----KGWFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCccc-----ccccccccH-------------------------HHHHHHHHHHHHcCchhhhCCcccc----
Confidence 999998752211 011111111 1134578899999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ |+|++++.| ....+.++||+|++|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999987 888777755 4568999999999996 67
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999988753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=361.65 Aligned_cols=211 Identities=29% Similarity=0.440 Sum_probs=183.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
+++||+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... .+.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 467999999999999999999999999999999999999997 9999999999877654 4789999999988889
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+|.+.++..-.. ......+ .+....++..|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~-----~~~~~~~-------------------------~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHL-----GLFGRPS-------------------------KEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccc-----ccccCCC-------------------------HhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 999999988643210 0000000 01122467889999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||.||+||+.+|++||||||||+||...+.++++.++++++..|.|+|+++|.+ .....+||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999988888988888765 578899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=347.23 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=185.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 259 (1119)
.+.+++|+|++|++||+++++|||||||||+|++|.+++.|+ +|+|.+||+++.+.. .++.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999997 999999999987654 46899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccC
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~ 337 (1119)
+||.||+.+--.+.+-. .++...+++++|+.+||+. ..+.+..+
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 99999998865544321 0123346789999999974 67777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||+|||.+||||+.+|+|+|||||+++|||.++.++.+.++++.+..++|+|+.+| ...|.+.++|+|++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTH-DidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTH-DIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEec-CHHHHHhhhceEEEe
Confidence 99999999999999999999999999999999999999999999999989999888765 567999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=357.14 Aligned_cols=207 Identities=30% Similarity=0.458 Sum_probs=186.0
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc---cCCh-hhhcceEEEEccCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQ-ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~---~~~~-~~~~~~~gy~~q~~~~~ 952 (1119)
.+...+++|||++|+.||++||.|||||||||||++|+|+.+ +..|.|.++|. +.++ ....|++||++|+..+|
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 345678999999999999999999999999999999999987 45899999998 5544 34467899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
++|||.||+.|+...+ ...++..+.+.++.++|++++|+++.+++ +..||||||||+++||||+.+|++|+|||
T Consensus 90 ~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 9999999999998776 33455667788899999999999999998 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+++||+.-++.+.+.|+++.++ |.|+|+||||++ +..+.+|++++|.+ |+|+..|+..
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 99999999999999999999876 999999999985 78999999999975 8998888864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=355.36 Aligned_cols=224 Identities=29% Similarity=0.470 Sum_probs=190.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCCcc-cceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 257 (1119)
....+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 5444333 47899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
++|||.+||.|+.+++.. .|+ ..+.+.+++++|+.+.|++.++.+.-+
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~ryP~Q 137 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLADRYPAQ 137 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhhcCchh
Confidence 999999999999876511 010 011234577889999999999888866
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||++||||+..|++||||||+++||++.+.++-+.|+++.+..+.|+++++|. ..|++++||+|++|
T Consensus 138 -----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD-~eea~~ladrvvvl 211 (345)
T COG1118 138 -----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD-QEEALELADRVVVL 211 (345)
T ss_pred -----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCC-HHHHHhhcceEEEe
Confidence 999999999999999999999999999999999999999999999988878888777655 56999999999999
Q ss_pred cCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHh
Q 001228 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (1119)
++|+|...|+++++- ..|...-.+.|+-+
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 999999999999984 34555555555543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=329.26 Aligned_cols=200 Identities=28% Similarity=0.378 Sum_probs=173.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+||||+|++||++-|+|||||||||||++|.+... +..|.|.++|+++.. .-++|+||+|+|+..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999765 458999999998643 235788999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||+||+.|...+.. ....+.++.+.++|+.+||.+..+.. +..||||||||++||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999877653 34566777899999999999887776 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc-eEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~~l~l~~gG~v~~~g~~ 1092 (1119)
|.+|||..+..||+++.++...|.|||+.|||. ++...+. +++.| +.|+++.+...
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l-~~Grl~~d~~~ 221 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLAL-EDGRLVRDESR 221 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEE-eCCEEEecccc
Confidence 999999999999999999988899999999984 5565554 55556 46898876543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.60 Aligned_cols=208 Identities=27% Similarity=0.400 Sum_probs=186.1
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~ 953 (1119)
+.++...+|+|||++|+.||+++|+|||||||||||++|||+.. +.+|+|.|+|.+.+. ....|.+++|+|+..++|
T Consensus 11 K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 11 KSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred EEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 33444339999999999999999999999999999999999877 568999999998765 445688999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
++||+||+.|+..++. ...++.++++.++.+.+++.++.++. +.+|||||||||+|||||+++|++++||||
T Consensus 89 hmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 89 HMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred CCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 9999999999987763 45667788899999999999999998 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
.|+||++.+..+...|+++.++ |.|+|.+|||. .+....+|++.+|. +|++...|++.+
T Consensus 161 lSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 161 LSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCChHH
Confidence 9999999999999999998755 89999999997 57888999999997 689999888654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=341.93 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=181.7
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDL 255 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~ 255 (1119)
..+.||+|||+.|++||+++|||||||||||||++|.|+++|+ +|+|.++|+++.... .++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3567999999999999999999999999999999999999998 999999999986553 2467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-cccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 334 (1119)
+|..|||.||+.|-.+-... .|+..+ +..+..-|+..||... +|.+
T Consensus 96 LFssltV~eNVafplre~~~-------------------lp~~~i--------------~~lv~~KL~~VGL~~~~~~~~ 142 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK-------------------LPESLI--------------RELVLMKLELVGLRGAAADLY 142 (263)
T ss_pred cccccchhHhhheehHhhcc-------------------CCHHHH--------------HHHHHHHHHhcCCChhhhhhC
Confidence 99999999999996542211 111111 1234456788999876 7877
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+ ||||++||+++|||++.+|+++|+||||+||||.++..|.++++++.+.++.|+++.+|+ .++++..||++
T Consensus 143 PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv 216 (263)
T COG1127 143 PSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRV 216 (263)
T ss_pred chh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceE
Confidence 777 999999999999999999999999999999999999999999999999889888887765 56999999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|.+|+|+++|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=336.68 Aligned_cols=224 Identities=25% Similarity=0.340 Sum_probs=193.1
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhh----hcceEEEEc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET----FARVSGYCE 946 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~----~~~~~gy~~ 946 (1119)
+++.++|++++++++||+++++||++||+|||||||||.+.++.|+.. +.+|.|.++|.++.... .+..+||+|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCccccc
Confidence 445567788899999999999999999999999999999999999876 45899999999876533 234599999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
|++..|..+||+||+......+.. +....+++..++++|+.|++.+++++.. ..||||||+|+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCC
Confidence 999999999999999877666532 3333456667889999999999998874 3699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
.++||||++|+||-+...|+++++.+.+.|..|++|-|+.. ++...|||.+++.+ |++.+.|...+ +.+.+.++|-
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ei~~n~~Vr~~YL 237 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEEIVNNEDVRRVYL 237 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHHHhcChhhhhhcc
Confidence 99999999999999999999999999999999999999986 78899999999975 89999998754 3345555553
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=335.68 Aligned_cols=218 Identities=24% Similarity=0.356 Sum_probs=183.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---CCCeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---~~g~~~G~i~i~g 930 (1119)
.++++|++.++ +.+++|+|||+.|++++++||||||||||||||++|.+.. ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 35666766554 4567999999999999999999999999999999999742 3346789999999
Q ss_pred ccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCC
Q 001228 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGV 1004 (1119)
Q Consensus 931 ~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~ 1004 (1119)
.++. ...+|+.+|.|+|.|..|| +|++||+.|+..+....+ ++-++.+++.|+...|++- .|++-.. .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 8763 3468899999999999999 999999999988765433 6677889999999988653 3333221 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.+|||||||||||||||+-+|+|||||||||+|||.+...|-++|.+++ +.-|||+|||.+. ......|+..++.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4699999999999999999999999999999999999999999999998 4699999999875 56677899999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 225 ~LvE~g~T~ 233 (253)
T COG1117 225 ELVEFGPTD 233 (253)
T ss_pred EEEEEcCHH
Confidence 999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=333.31 Aligned_cols=212 Identities=31% Similarity=0.369 Sum_probs=185.4
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCC
Q 001228 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDL 255 (1119)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~ 255 (1119)
++++...++++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|++||.+.... ..++.+|.++.+--
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~g 85 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERG 85 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcC
Confidence 44444455899999999999999999999999999999999999998 99999999886443 24678999998888
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++..||++|||.|.+++.+. ++. +.+.+++.+.+.|+|.+|.|+.+
T Consensus 86 lY~RlT~rEnl~~Fa~L~~l----------~~~------------------------~~kari~~l~k~l~l~~~~~rRv 131 (245)
T COG4555 86 LYARLTARENLKYFARLNGL----------SRK------------------------EIKARIAELSKRLQLLEYLDRRV 131 (245)
T ss_pred hhhhhhHHHHHHHHHHHhhh----------hhh------------------------HHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999887542 111 12345788999999999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|+ +|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .|+++|.+. |..+|+..+||+|+
T Consensus 132 ~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~EvealCDrvi 204 (245)
T COG4555 132 GE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEALCDRVI 204 (245)
T ss_pred hh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHHhhheEE
Confidence 98 999999999999999999999999999999999999999999999865 477777775 56789999999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|++++.|+.+++..
T Consensus 205 vlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 205 VLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEecCcEEEcCCHHHHHH
Confidence 999999999999988754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=403.70 Aligned_cols=230 Identities=41% Similarity=0.726 Sum_probs=204.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|||++|++||+++|+|||||||||||++|+|+.+++ ..+|+|.++|.+.....+++.+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999986543 3579999999988766677889999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+||+.|++.++.+.....+++.+.++++++.++|.+..|..+|.++ ..+||||||||++||+||+.+|+||||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999988766555566677789999999999999999988643 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhhhhcCCCccCCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFFPALSVD 1116 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~~~i~g~~~~~~~ 1116 (1119)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|. +|+++|.|+. +++.+||+ .+ |.+ ||++
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~-~~-g~~-~p~~ 268 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFS-DL-GHP-CPEN 268 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHH-Hc-CCC-CCCC
Confidence 999999999999999988899999999999878899999999997 5899999986 56889999 55 433 5544
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=339.92 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=184.7
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccC
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQH 253 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~ 253 (1119)
++..+++|+|||+.|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++.... .++.+||++|+
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~ 89 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQ 89 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEecc
Confidence 335578999999999999999999999999999999999999987 999999998876543 24679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
..+.+.+||.+|+..+..-+. ..++. -.+..+..| +...-..|+.+|+.+.+-+
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~--s~~~s---------lfglfsk~d---------------k~~Al~aLervgi~~~A~q 143 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYT--STWRS---------LFGLFSKED---------------KAQALDALERVGILDKAYQ 143 (258)
T ss_pred CCcccccHHHHHHHhhhcccc--hHHHH---------HhCCCCHHH---------------HHHHHHHHHHcCcHHHHHH
Confidence 999999999999987643211 11111 112222111 1223457899999999999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
+.++ |||||+|||+|||||+.+|+++|-|||+++|||.++.++++.|+++++..|.|+|+.+||- .-+.++|||
T Consensus 144 ra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~R 217 (258)
T COG3638 144 RAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADR 217 (258)
T ss_pred Hhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhh
Confidence 9988 9999999999999999999999999999999999999999999999999899999998875 467899999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|+-|++|+++|.||++++.+
T Consensus 218 iigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 218 IIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred heEecCCcEEEeCChhhhhH
Confidence 99999999999999988754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=345.88 Aligned_cols=192 Identities=25% Similarity=0.342 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+|+|+|++|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999997 999999999883 3566899999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+....+... . +....++..|+.+||.+..|....+ |
T Consensus 91 ~NV~l~l~~~~~~~----------~------------------------e~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKSK----------A------------------------EARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccch----------H------------------------hHHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 99999877654210 0 1122467899999999999999877 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..++|+++++|. -.|...++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-i~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-VDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988878888877655 56889999999999983
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=341.68 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
.++|++||+.|++||+++|+|||||||||||++|+|...|+ +|.|.++|.+++.... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999996 9999999988875542 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc-ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~v 335 (1119)
+|++||+||+.+.....+.... ......+.+++.+||++..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999986655432210 01223567899999997766 778
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+|||||+.+|+++|.||||..||+.++..|++.++++++..|+|+|+++|.| ++...|||++
T Consensus 141 ~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 SE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 77 9999999999999999999999999999999999999999999999988888999998875 6889999999
Q ss_pred EEcCCeE
Q 001228 416 LLSEGQI 422 (1119)
Q Consensus 416 lL~~G~i 422 (1119)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=367.96 Aligned_cols=210 Identities=26% Similarity=0.379 Sum_probs=186.1
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCC
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHS 952 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~ 952 (1119)
++.|++..+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++... ..+|.+|+|+|+..+|
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccC
Confidence 345566789999999999999999999999999999999999887 4589999999988653 3467899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
|++||+||+.|+..++. ....++.++++.+++++++|.++.++. +.+||||||||++|||||+.+|++|||||
T Consensus 90 PHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 90 PHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred CCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 99999999999987443 334456778899999999999999888 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
|.|+||..-+..++..++++.+ .|.|.|++|||.+ +....+|++.+|. +|+|+-.|++.+
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~e 223 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPEE 223 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHHH
Confidence 9999999999999999999874 4999999999975 7788899999997 489998888653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=366.65 Aligned_cols=215 Identities=28% Similarity=0.393 Sum_probs=183.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|++..+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 46677766433 34569999999999999999999999999999999999876 4589999999886
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+||+||+.|.+.++. ....+....++++++.++|.+..++.+ .+||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 3456789999999999999999999998765532 223334456789999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999985 57778999999975 79999987
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 53
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=335.65 Aligned_cols=230 Identities=24% Similarity=0.371 Sum_probs=200.4
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
.+++++++++.+++||||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.++++. ...+|||+|.+.-
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERG 82 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERG 82 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhc
Confidence 344566778899999999999999999999999999999999999887 4689999999988654 4567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||.|.|.|.+.+. .++.++....+..+|+.+++.....+. +.+||.|++|++.+..+++++|++++|
T Consensus 83 Ly~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 83 LYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred cCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 999999999999999886 466777788899999999998877776 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChH-----------HH
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESH-----------KL 1099 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~-----------~l 1099 (1119)
|||+|||||.+.+.+.+.+.+++++|.|||+++|+++ ++.+.||++++|++ |+.|..|+...-+. +.
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ies~~ 232 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDL 232 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEeccC
Confidence 9999999999999999999999999999999999986 78999999999976 77888888643111 11
Q ss_pred H-HHhhhhcCCCccCC
Q 001228 1100 I-EYFEVSIPFFPALS 1114 (1119)
Q Consensus 1100 ~-~~f~~~i~g~~~~~ 1114 (1119)
. +-.. .||||-++.
T Consensus 233 s~eeL~-~ipgi~~~~ 247 (300)
T COG4152 233 SLEELA-NIPGILKIT 247 (300)
T ss_pred chHHHh-cCCCceeee
Confidence 1 2245 899998877
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=364.19 Aligned_cols=202 Identities=26% Similarity=0.323 Sum_probs=175.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 469999999999999999999999999999999999876 4589999999876431 23568999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||+||+.|...... ....+..+.+.++++.++|.+..++.+ ..||||||||++|||||+.+|+||+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998765431 234455667899999999998888774 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|++++.|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999765 999999999975 4667899999997 48999998853
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=317.10 Aligned_cols=201 Identities=24% Similarity=0.397 Sum_probs=179.1
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
.++..|++||++||+||||||||||||.|||+..|. +|+|.+||++.+...+ +|.++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 568899999999999999999999999999999986 9999999999887655 578999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
++.. ++-+. .. +....++.++...||..+.+...++ |||||
T Consensus 94 LGl~---P~LkL------~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLKL------NA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---ccccc------CH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8642 11111 11 1123467789999999999999988 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
||||++||+|+.+.+|++||||+|+|||.-+.+....+.+++.+.+.|+++.+|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999986 8889999999999999999999
Q ss_pred hhHHH
Q 001228 428 RDNVL 432 (1119)
Q Consensus 428 ~~~~~ 432 (1119)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=367.77 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.+|||+|++.+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4689999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------KA------------------------EIEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999975532210 00 0112457789999999999988877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876688888887765 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.72 Aligned_cols=203 Identities=26% Similarity=0.380 Sum_probs=172.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~ 952 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 3469999999999999999999999999999999999876 358999999987532 23456799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||.||+.+...... ....+...+.+.++++.+++.+..++. +.+||||||||++|||||+.+|+||||||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 90 DSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred CCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999988643221 122334455688899999998777665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999764 899999999975 46678999999975 789988874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=359.64 Aligned_cols=206 Identities=25% Similarity=0.341 Sum_probs=179.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999987 999999999886543 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|.....+.. + . +....+.++++.+||++..|..+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~----------~--------------~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------K----------D--------------EIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999998865432210 0 0 0112356789999999988888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|+. ..+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876688888877664 5788999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=359.34 Aligned_cols=204 Identities=27% Similarity=0.392 Sum_probs=176.2
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 34569999999999999999999999999999999999876 458999999987643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.+.+.++. .......+.++++++.++|.+..++.+ ..||||||||++||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765432 223344556889999999988777764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999877999999999975 57778999999975 8999888753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=361.85 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=182.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 41 ~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEEC
Confidence 46677766433 34569999999999999999999999999999999999876 4589999999876
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+|+.||+.+.+.++. ....+..+.++++++.++|.+..++.+ .+||+||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 3456789999999999999999999987655432 222334456778999999988777764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++||+||+.+|++|||||||+|||+.++..++++|+++.++|+|||++||+++ ++...||++++|.+ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999985 57788999999975 79999987
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 256 ~~ 257 (340)
T PRK13536 256 PH 257 (340)
T ss_pred HH
Confidence 54
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=363.82 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=181.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999987 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+.++.. +. +....++++++.+||++..|+.+.+
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~l~L~~~~~~~~~~----- 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RA------------------------EVAERVAELLDLVGLPGSERKYPGQ----- 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhCChhh-----
Confidence 99999975432110 00 0122467899999999999988876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999877788888887766 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+++|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=341.91 Aligned_cols=214 Identities=26% Similarity=0.363 Sum_probs=186.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|++|+++. +..+|+|+|++|++||.++|+|+||||||||+++|+|... +..|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeecc
Confidence 467787776541 1469999999999999999999999999999999999876 45799999998854
Q ss_pred ----hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 ----QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ----~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
...+++.+|||+|+|.. +..-||.|.+.|+.... ..+.++.+++++++++.+++.++.++. +.+|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 45678899999999865 45679999999986533 445566788899999999999998887 458999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||+||.+|+.+|++|+|||||||||+.+++.+++.++++.++ |.|||++|||.+ .+...+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 699999999975 57777999999975 89999
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
+|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=364.48 Aligned_cols=203 Identities=26% Similarity=0.364 Sum_probs=177.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.++|.+||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 3469999999999999999999999999999999999876 468999999987643 2234789999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||+|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 94 RENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred HHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999986433 2334455567899999999998888874 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+.+.|+++.++ |.|+|++||+++ +....+|++++|. +|+++..|+..
T Consensus 166 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999998765 999999999975 6788899999997 58999998854
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=362.40 Aligned_cols=206 Identities=24% Similarity=0.386 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+.++... . +....++++++.+||.+..+..+.+
T Consensus 96 ~eNi~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------E------------------------ERKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999999765432110 0 0122457789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||++|||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876678888877665 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=331.82 Aligned_cols=200 Identities=27% Similarity=0.371 Sum_probs=169.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCC--CCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDI--HSPY 954 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~--~~~~ 954 (1119)
.+|+||||+|.+||++||+|+||||||||.++|+|... +..|+|.++|.+.... .+++.+.+|+|+|. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 49999999999999999999999999999999999876 4589999999765432 46788999999986 6789
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.||++.|.-+.... ...+. .+.+.++++.+||.+ ..++. +.+||||||||+||||||+.+|++||||||
T Consensus 99 ~tv~~~l~Epl~~~---~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRPH---GLSKS--QQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhccC---CccHH--HHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 99999887654431 22222 233899999999965 44554 567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+||+..++.|++++.++.++ +.|+|+||||.+ -+...|||+++|++ |++++.++...
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~~ 228 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTEE 228 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechhh
Confidence 9999999999999999999754 889999999976 46778999999975 89999998654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=340.50 Aligned_cols=200 Identities=30% Similarity=0.427 Sum_probs=169.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 3469999999999999999999999999999999999865 458999999987643 2234579999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+...... .......+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 90 AENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987643321 22233445678999999998777665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.++..+++.|+++++ .|+|||++||+++ ++...||++++|.+ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999876 4899999999975 46778999999975 7887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=360.52 Aligned_cols=206 Identities=22% Similarity=0.367 Sum_probs=179.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc--eEEEECCccCCCCcc-cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 260 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ + |+|.++|.++....+ ++.++||+|+..+||.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 45999999999999999999999999999999999999987 7 999999998865433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.+..+.. + . +....++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------~----------~--------------~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------K----------A--------------DIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999976533210 0 0 0112457789999999999998877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~-~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +.|+|+++|++ .++..++|+|++|++
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKD 214 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998765 67877776665 588999999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++.+|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=362.78 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=178.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+||||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+... ...+|.+||++|++.++|.+||
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 3569999999999999999999999999999999999876 468999999987643 2345779999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+ .....+..+.++++++.++|.++.++. +.+||||||||++|||||+.+|++||||||||+|
T Consensus 94 ~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 94 ADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999986543 233445566789999999999988877 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+.+.|+++.++ |.|+|++||+++ +....+|++++|++ |+++..|+..
T Consensus 166 D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999998765 899999999985 67788999999975 7999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=354.55 Aligned_cols=206 Identities=29% Similarity=0.439 Sum_probs=178.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.++..+... . +....++.+++.+||.+..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA--------------------A--------------AARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998665433110 0 0012346788999999999999876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|++++.|+. .++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999965 477888877665 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=361.69 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=184.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..+ ++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 45677776543 23468999999999999999999999999999999999876 4589999999876
Q ss_pred Chh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
... ..+|.+||++|++.++|.+||+||+.|+...+. ....+..+.++++++.++|.++.++. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 234789999999999999999999999865432 33445567789999999999888877 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ +....+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999985 67788999999975 79999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 54
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=360.00 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=180.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999986 9999999998875443 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++|++||+||+.|..+..+... . +....+.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------Q------------------------ERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999998755432110 0 01123567899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..++|+|++.|+. .++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 87 9999999999999999999999999999999999999999999999776678888877665 57899999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=340.28 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=171.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. .++.++|++|++.+++..|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 469999999999999999999999999999999999865 458999999987642 3567999999998888899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
|+.+....+. .......+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654331 222334556889999999987766653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCC
Q 001228 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~ 1092 (1119)
.++..+++.|+++.+ .|+|||++||+++ ++...||++++|++ +|++++.++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999975 46778999999985 5899888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=361.28 Aligned_cols=215 Identities=24% Similarity=0.331 Sum_probs=184.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE--EEEEECCc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIKISGY 931 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~--G~i~i~g~ 931 (1119)
.++++|+++.+ ++..+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAY-------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEE-------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCE
Confidence 46677776544 23469999999999999999999999999999999999876 347 99999998
Q ss_pred cCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 932 PKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 932 ~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
++.. ...++.+||++|++.++|.+||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2334455667899999999999888874 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++||+++ +....+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999975 57788999999975 89999
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 98754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=320.35 Aligned_cols=222 Identities=24% Similarity=0.393 Sum_probs=176.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCCc-----ccceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 255 (1119)
.+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.|+|+++.+.. .++.+|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999987644 45688999999999886532 3688999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-ccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 334 (1119)
-|| +|++||+.|+.+..|... +.+.+ +++..|+.-+|-+ ..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh
Confidence 999 899999999998877543 11111 1222222222211 11111
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
= +...||||||+||++|||||+-+|+|||||||||+|||.++..|-+++.++.+ .-|+|+++| ...+..+..|+.
T Consensus 144 ~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~t 218 (253)
T COG1117 144 H--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDYT 218 (253)
T ss_pred h--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHhh
Confidence 1 22356999999999999999999999999999999999999999999999975 457766655 556889999999
Q ss_pred EEEcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
..+..|+++++|+.+++ |..|.++.+.||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 4557776666665
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=330.00 Aligned_cols=225 Identities=27% Similarity=0.368 Sum_probs=189.6
Q ss_pred ccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEE
Q 001228 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYC 945 (1119)
Q Consensus 870 ~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~ 945 (1119)
.++..+.++...+++||||++++||++||+||||||||||+|+|+|... +..|+|.++|.++... ..+..++..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceee
Confidence 3444556778899999999999999999999999999999999999876 4589999999987542 234568899
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhc--------CC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHH
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRL--------SS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~--------~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~ 1016 (1119)
+|...+|+.+||.||+..+...+. +. ....++..+.+.++|+.++|.+.++...+ +||.||||||.
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LE 159 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLE 159 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHH
Confidence 999999999999999988754221 11 11234556778999999999999998854 69999999999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-
Q 001228 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH- 1094 (1119)
Q Consensus 1017 iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~- 1094 (1119)
|||||+.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|.||++ -++..||++++|.. |+++++|++.+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~eV 237 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPEEV 237 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHHHH
Confidence 999999999999999999999999999999999999874 699999999997 48899999999975 89999998764
Q ss_pred -ChHHHHHHh
Q 001228 1095 -ESHKLIEYF 1103 (1119)
Q Consensus 1095 -~~~~l~~~f 1103 (1119)
+...+++.|
T Consensus 238 ~~dp~VieAY 247 (250)
T COG0411 238 RNNPRVIEAY 247 (250)
T ss_pred hcCHHhHHHh
Confidence 233455544
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=359.01 Aligned_cols=224 Identities=26% Similarity=0.424 Sum_probs=183.3
Q ss_pred cccccc-cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE
Q 001228 845 GMILPF-QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 923 (1119)
Q Consensus 845 ~~~~~~-~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~ 923 (1119)
|...|. -...|+|+||+|.|+..+ +..+|+|+||+|+|||.+|||||||+||||+.++|....+ +.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 444443 345799999999998643 4679999999999999999999999999999999998776 568
Q ss_pred EEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHH-----HHHHHHHHHcCCCCcc
Q 001228 924 GDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELVELKSLN 995 (1119)
Q Consensus 924 G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~ 995 (1119)
|.|.+||+|+++ ..+++.+|+|.|+|.+|.. ||+||+.|+.. ....++.. +.+.+.+. ++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccc
Confidence 999999999754 5678899999999999865 99999999753 22222211 11222222 344556
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 996 ~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
|..+|+.|. .||||||||++|||||++||+||||||+||.||+++...|+++|.++.+ ++|||+|+|++ .+.+.+|
T Consensus 595 ~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHAD 670 (716)
T ss_pred ccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhcc
Confidence 777887654 7999999999999999999999999999999999999999999999875 69999999996 4788999
Q ss_pred eEeEEecCcEEEEecCCC
Q 001228 1076 ELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1076 ~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|+++++ |+|++.|...
T Consensus 671 ~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred EEEEEcC-CeEEecccHH
Confidence 9999975 8999999643
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=361.54 Aligned_cols=218 Identities=26% Similarity=0.367 Sum_probs=185.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. + . +....++++++.+||++..++.+.+
T Consensus 104 ~eNi~~~l~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------A----------A--------------EITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCC----------H----------H--------------HHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 99999975432210 0 0 0112357789999999999988876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||++|||..++..+.+.|+++.+..+.|+|+++|.+ .++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999887788888776655 589999999999999999
Q ss_pred EEEcChhHHHHHHHhcCCCCCCCCChhHHH
Q 001228 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (1119)
+..|+++++. ..|.....|+|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 235544455554
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=371.11 Aligned_cols=211 Identities=24% Similarity=0.443 Sum_probs=177.5
Q ss_pred cccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCC
Q 001228 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHH 257 (1119)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 257 (1119)
+++.+||+|+|++|+|||.|||+||||+||||+.+.|..+++|+ +|+|.+||+|+.+..+ ++.||+|.|+|.+|
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLF 554 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceee
Confidence 34578999999999999999999999999999999999999997 9999999999987764 58899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.. ||+|||.|+.. ..+.++.+.++..++. .+. +.++++.+||.||+
T Consensus 555 s~-sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANa-----h~F---I~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 555 SG-SIRENIAYGLD-------------------------NATDEEIEAAAKMANA-----HEF---ITNFPDGYNTVVGE 600 (716)
T ss_pred cc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCh-----HHH---HHhCccccccccCC
Confidence 75 99999998643 1122223333332221 122 34689999999997
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
. +..||||||||++|||||+.+|.||||||.||+||+.+...+.+.|.+..+ ++|+++.-|.- .+.+.+|+|+++
T Consensus 601 k-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi 675 (716)
T KOG0058|consen 601 K-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVI 675 (716)
T ss_pred c-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEE
Confidence 2 234999999999999999999999999999999999999999999998875 57887776653 688999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+++|+++
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999999875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=354.82 Aligned_cols=202 Identities=29% Similarity=0.394 Sum_probs=172.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 3569999999999999999999999999999999999865 458999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.+.+..+. .......+.++++++.+++.+..++.+ .+||||||||++||+||+.+|++|||||||+|
T Consensus 94 v~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 165 (303)
T TIGR01288 94 VRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLILDEPTTG 165 (303)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987554321 222333456778999999987777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 166 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999878999999999975 56778999999975 789988875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=339.46 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 3569999999999999999999999999999999999865 458999999976532 234567999999999889999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+|++.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 90 GWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999988654331 223334456889999999987777663 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.+++.+.+.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999999876 899999999975 56778999999975 788887764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=358.24 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=177.2
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh----cceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF----ARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~----~~~~gy~~q~~~ 950 (1119)
+.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45669999999999999999999999999999999999876 468999999988643 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++|.+||+||+.|...+. ....++..+.+.++++.++|.+..++.+ .+||||||||++|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2334455677899999999988777764 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||++||+.++..+++.++++.++ |+|||++||+++ +....+|++++|. +|+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 9999999999999999999999754 899999999975 5678899999997 47999988743
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=336.26 Aligned_cols=199 Identities=27% Similarity=0.447 Sum_probs=169.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 3469999999999999999999999999999999999865 458999999987643 3456799999999988999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.+.++++.+++.+..++. +.+||+|||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99987654432 22233455688999999998766665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999998877899999999975 46677999999975 7877653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=359.52 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=177.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.++|.+||
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 3469999999999999999999999999999999999876 458999999987643 2234679999999999999999
Q ss_pred HHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 958 YESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 958 ~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+||+.|....+.. .....++..+.+.++++.++|.++.++. +.+||||||||++|||||+.+|++|||||||+|
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~ 166 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQKQRVALARALAVEPQILLLDEPFGA 166 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999987643211 1223344566789999999998888776 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+++.|+++.++ |.|+|++||+++ +....+|++++|++ |++++.|+..
T Consensus 167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999765 899999999985 67888999999975 8999988753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=338.61 Aligned_cols=194 Identities=25% Similarity=0.350 Sum_probs=165.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 359999999999999999999999999999999999865 458999999987532 1 24567999999999899
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+||.||+.+....+. .......+.+.++++.+++.+..++.+ .+||||||||++|||||+.+|+|||||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 222334556889999999988777663 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|+|||+.+++.+.+.|++++++|+|||++||+++ .+...||++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 46667999999975 54
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=363.27 Aligned_cols=219 Identities=29% Similarity=0.367 Sum_probs=182.3
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~ 953 (1119)
|+++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCC
Confidence 344679999999999999999999999999999999999876 458999999987643 445678999999999989
Q ss_pred CCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 954 YVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
.+||+|++.++...+.. .........+.++++++.+++.++.++. +.+||+|||||+.|||||+++|+||||||
T Consensus 91 ~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 91 EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999886432110 0111233456789999999999888876 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
||+|||+.++..++++|+++.++|+|||+++|+++ ++.+.||++++|++ |++++.|+..+ ....+.+.|.
T Consensus 166 PtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ev~~~~~l~~~~~ 237 (402)
T PRK09536 166 PTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPADVLTADTLRAAFD 237 (402)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhCcHHHHHHhC
Confidence 99999999999999999999877999999999986 56788999999975 88999998643 2334666664
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=340.62 Aligned_cols=203 Identities=27% Similarity=0.374 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 3569999999999999999999999999999999999865 458999999987532 12 23569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|++||+.+....+. .........++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 90 LTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999987643321 22233445678899999998776665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.+++.+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 999999999999999999877999999999975 57788999999975 7898888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=324.58 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=177.3
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCE 946 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~ 946 (1119)
+++...|++.++|++|||++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 334455677889999999999999999999999999999999999876 348999999998754 33456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
|....||.+||+|||..++..+.. ........+++.++|- |.+..++..| .|||||||.|+|||||+.+|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCC
Confidence 999999999999999988755432 1112222677888874 6666677654 69999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
++|+|||||.||-|.-.+.|.++|+++.++ |.||+++.++.. ...+.+|+.++|.+ |+++++|+..+
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHHH
Confidence 999999999999999999999999999865 789999999865 46678999999975 89999998543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=389.18 Aligned_cols=216 Identities=22% Similarity=0.365 Sum_probs=182.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|++..++ .+++.+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 3566777664432 023569999999999999999999999999999999999876 458999999988
Q ss_pred CCh--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 933 ~~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ .+||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999999776543 223344566889999999998887764 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||||+||+||+.+|+||||||||+|||+.+++.++++|+++. +|+|||++||+++ +....+|++++|.+ |++++.|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999975 56678999999975 8898888
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 64
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=336.91 Aligned_cols=198 Identities=30% Similarity=0.460 Sum_probs=170.0
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999865 458999999987642 23456799999999888989999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+ ........+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765433 122334456788999999998777766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.+++.+.+.|+++.++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999975 56778999999975 7887653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.08 Aligned_cols=203 Identities=24% Similarity=0.386 Sum_probs=175.5
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 34569999999999999999999999999999999999876 458999999987643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+.||+.+.+.++. ...++..+.++++++.++|.+..++.+ ..||+|||||++||+||+.+|++|||||||+
T Consensus 91 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999998765542 223334456889999999998877764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.+++.+++.|+++++ ++|||++||+++ ++.+.||++++|.+ |++++.|+..
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD 217 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999864 799999999975 57788999999975 8999988854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=338.23 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=174.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999886 999999998875432 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+......... .. +....++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLS---------EE------------------------EIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccCCC---------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh
Confidence 99999999988643210000 00 0012346688999998888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=334.51 Aligned_cols=192 Identities=29% Similarity=0.386 Sum_probs=163.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC-CCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI-HSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~-~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.....++.++|++|++. .+...|+.
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999866 458999999987654445567999999974 34467999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+...... ...+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 1124578899999998877766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+.+++.+++.|++++++|+|||++||+++ ++...||++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999975 46667999999975 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=334.60 Aligned_cols=199 Identities=27% Similarity=0.391 Sum_probs=168.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 469999999999999999999999999999999999865 4589999999876431 2235799999999888899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. ....+..+.++++++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987643321 22334455678899999998777766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999764 899999999975 56677999999975 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.44 Aligned_cols=215 Identities=22% Similarity=0.336 Sum_probs=184.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367777765442 3468999999999999999999999999999999999876 4589999999876
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...++.+||++|++.++|.+||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999976433 1233444567889999999998888874 57999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||+++ +....+|++++|.+ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999764 999999999975 67888999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 53
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=339.39 Aligned_cols=205 Identities=29% Similarity=0.399 Sum_probs=171.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---h-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---T-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~-~~~~~gy~~q~~~~~~~ 954 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 3469999999999999999999999999999999999865 4589999999876431 2 23569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCC-------ccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 955 VTVYESLLYSAWLRLSSD-------VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+||+||+.+......... .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988654321110 01233445678999999998776665 357999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 9999999999999999999999999877999999999975 56677999999975 788888764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=351.61 Aligned_cols=206 Identities=27% Similarity=0.420 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 56999999999999999999999999999999999999987 999999998875421 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.++..+... . +....++.+++.+||++..++.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------D------------------------EAEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998655432110 0 0012356789999999989998877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. |.|++++.|++ .++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~-~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYM-EEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999764 77888877665 58889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=340.03 Aligned_cols=205 Identities=28% Similarity=0.404 Sum_probs=171.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+||.
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 469999999999999999999999999999999999865 4589999999875432 2245699999999988899999
Q ss_pred HHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+....+... ........+.++++++.+++.+..++. +.+||+|||||++|||||+.+|++|||||||+||
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L 167 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 9998865332110 012223345678899999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+.+.|++++++ |+|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (239)
T cd03296 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTPD 222 (239)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 999999999999999765 899999999975 46778999999975 7898888753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=341.60 Aligned_cols=205 Identities=30% Similarity=0.372 Sum_probs=170.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999865 358999999987542 234567999999999889
Q ss_pred CCCHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+||+||+.+..... ...........+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 000111123345678899999998766665 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 999999999999999999999999754 899999999986 56668999999975 7898888753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=345.24 Aligned_cols=210 Identities=23% Similarity=0.271 Sum_probs=175.8
Q ss_pred ccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh----hcceEEE
Q 001228 872 TEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGY 944 (1119)
Q Consensus 872 ~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gy 944 (1119)
+..+.+++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 44455666789999999999999999999999999999999999876 358999999987532 11 1357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 945 CEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 945 ~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
++|++.+++.+||+||+.+...... .......+.+.++++.++|.+..++.+ .+||+|||||++|||||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999998889999999988653321 122334456788999999987777763 47999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+||||||||+|||+.+++.+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999998754 899999999975 46778999999975 7898888753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=355.86 Aligned_cols=218 Identities=25% Similarity=0.341 Sum_probs=180.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++. +..++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~---------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQ---------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCC---------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 456777655421 0113469999999999999999999999999999999999876 45899999998764
Q ss_pred h---h---hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 Q---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~---~---~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
. . ..++.+||++|++.+++.+||+||+.+....+. .......+.++++++.++|.+..++. +.+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRY-----PAQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 2 1 235679999999999999999999998754331 22334456688999999998877776 35799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999754 899999999975 56678999999975 8999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 988753
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=358.83 Aligned_cols=203 Identities=27% Similarity=0.377 Sum_probs=175.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 3469999999999999999999999999999999999876 458999999987643 1234679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+...+. ....+..+.++++++.++|.+..++.+ .+||||||||++|||||+.+|+||||||||+||
T Consensus 93 ~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L 164 (369)
T PRK11000 93 AENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999998764332 233444567899999999988777763 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.+++.+++.|+++.++ |.|||++||+++ ++...||++++|++ |+++..|+..
T Consensus 165 D~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999998765 899999999975 57788999999975 8999988753
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=333.15 Aligned_cols=196 Identities=30% Similarity=0.429 Sum_probs=167.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+..+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++..||
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 3469999999999999999999999999999999999865 458999999987643 2345679999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+. . ..+.++++++.+++.+..++. +..||+|||||++|||+|+.+|++|||||||+||
T Consensus 90 ~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 90 RENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999988654321 1 134578899999998777765 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.+++.+++.|+++.++|+|||++||+++ ++...+|++++|++ |++++.|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999998877999999999975 46677999999975 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=354.83 Aligned_cols=210 Identities=28% Similarity=0.429 Sum_probs=178.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.++|.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 45999999999999999999999999999999999999987 9999999998865433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|..+....... ... .+....++.+++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNA------------------------AAIKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCH------------------------HHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999987543110000 000 00112456789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|.+ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876677877776654 689999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=380.23 Aligned_cols=207 Identities=29% Similarity=0.488 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1119)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||++++.... ++.++||+|++.+|.. |
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-S 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-S 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-c
Confidence 5899999999999999999999999999999999999997 9999999999887654 6889999999999865 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.++. |+.+.++.++++..++.. +. +..++..+||.||+ ++.
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~-----~f---I~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGAH-----EF---IENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcH-----HH---HHhccccccccccc-CCC
Confidence 999998752 333344555555554432 11 34688899999995 667
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.+ ++|+|+..|.+ .+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 7999999999999999999999999999999999999999999999865 68999998886 5889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++.+|+.+++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999976
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=335.91 Aligned_cols=193 Identities=31% Similarity=0.437 Sum_probs=164.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------h-hcceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------T-FARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~-~~~~~gy~~q~~~~~ 952 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 469999999999999999999999999999999999865 4589999999875421 1 245799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||+||+.+....+. .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|+||||||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998754432 22233445688999999998777665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||+|||+.+++.+.+.|+++++ .|+|||++||+++ ++ ..||++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 5899999999975 34 48999999976 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=337.54 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=171.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~~~~~~ 954 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 69999999999999999999999999999999999876 4589999999876421 235679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|++||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999987654331 22333455688999999998777665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999998765 899999999975 46678999999975 889888763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=356.83 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=179.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.+|||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999998765433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.||+.|+.+..+.. +. +....++.+++.+||.+..++.+.+
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999975432210 00 0112456789999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999998776788888877665 589999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=336.30 Aligned_cols=203 Identities=26% Similarity=0.322 Sum_probs=169.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC-----CCCeeEEEEEECCccCCh-----hhhcceEEEEccC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQN 948 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~-----~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~ 948 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.++.. ..+++.++|++|+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 346999999999999999999999999999999999976 4 468999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.++ .+||+||+.+....+.. .......+.+.++++.+++.+..++... +.+||||||||++|||||+.+|++|
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8877 79999999886543311 1112234567889999999876555421 2579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||||+|||+.++..+++.|++++++ +|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 999999999999999999999999876 99999999975 46678999999975 789888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=308.13 Aligned_cols=197 Identities=26% Similarity=0.344 Sum_probs=171.8
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
..+++|++||++||+||||||||||||+|+|... +.+|+|.|+|.+.... ...|-++.++|+..+|..+||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4678899999999999999999999999999887 4589999999886443 345668999999999999999999988
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
+..-... -..+.++.++.++..+||..+.++.+ .+||||||||+++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~Lk---L~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGLK---LNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCcccc---cCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 7532211 12345567899999999999998884 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1044 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1044 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++..++.++++ ++.|++++||+|+ +....+|+++++++ |+|.+.|+..
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 99999999974 5999999999997 78899999999975 8999999853
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=356.52 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=183.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..+ ++..+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 46777776543 23469999999999999999999999999999999999876 4589999999876
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...+|.+||++|++.++|++||.||+.|+...+ .....+..+.+.++++.++|.++.++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999876433 223445566789999999999888876 457999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++|||++ +....+|++++|.+ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999999865 4899999999975 67888999999975 89999988
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 54
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=350.76 Aligned_cols=206 Identities=26% Similarity=0.365 Sum_probs=177.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc------cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998765321 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------K----------AE--------------IKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999998865432210 0 00 012356788999999888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876678888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=334.82 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=176.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++.. .....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 6777877654310 001459999999999999999999999999999999999865 45899999998764
Q ss_pred hh---h---h-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 935 QE---T---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~---~---~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. . . ++.++|++|++.+++.+|++||+.+...++ ....+...+.+.++++.+++.+..++. +.+|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhC
Confidence 31 1 2 256999999998888999999998865432 122233445688999999998776665 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ....+|++++|. +|++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999875 5899999999974 345578999886 5899
Q ss_pred EEecCC
Q 001228 1087 IYAGPL 1092 (1119)
Q Consensus 1087 ~~~g~~ 1092 (1119)
++.+++
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988875
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=355.72 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=178.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45999999999999999999999999999999999999987 9999999998765432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KE------------------------EINQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999875432210 00 0112356789999999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998776678888887765 488899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=340.03 Aligned_cols=205 Identities=26% Similarity=0.309 Sum_probs=169.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 459999999999999999999999999999999999865 458999999987532 124567999999999889
Q ss_pred CCCHHHHHHHHHHhh-----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+||+||+.+..... ...........+.+.++++.+++.+..++. +.+||||||||++|||||+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997642110 000111223345678899999998766665 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 999999999999999999999998754 899999999975 46678999999975 7898888754
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=319.54 Aligned_cols=204 Identities=26% Similarity=0.318 Sum_probs=174.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCC--CCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 258 (1119)
++|+|||++|.+||.++|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776542 356799999997 6789
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~ 337 (1119)
..||++.|.-..+..+.. +....+.++++.+||+. .++...-+
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l~R~P~e 141 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFLDRRPHE 141 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 999999997654432211 01112567899999985 45666655
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+..+-|.++.. |...-+..+||||++|
T Consensus 142 -----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is-Hdl~~v~~~cdRi~Vm 215 (252)
T COG1124 142 -----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS-HDLALVEHMCDRIAVM 215 (252)
T ss_pred -----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe-CcHHHHHHHhhheeee
Confidence 9999999999999999999999999999999999999999999999988777766665 5566899999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.++..++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999999864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=317.05 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=175.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1119)
..++|++||+.+++||+++|+|||||||||||++|+|..++. +|+|.++|++++...+ +..++||||....||
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 467999999999999999999999999999999999999886 9999999999987755 356999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 337 (1119)
.|||+|||..++...... . . .....|.+.+.| -|.+-.++.-|+
T Consensus 92 ~LTVeENL~~g~~~~~~~-~-----------~-----------------------~~~~~e~v~~lFP~Lker~~~~aG~ 136 (237)
T COG0410 92 RLTVEENLLLGAYARRDK-E-----------A-----------------------QERDLEEVYELFPRLKERRNQRAGT 136 (237)
T ss_pred hCcHHHHHhhhhhccccc-c-----------c-----------------------ccccHHHHHHHChhHHHHhcCcccC
Confidence 999999998765432110 0 0 000123344444 255566777787
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||+|-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+..+ ..|+.+.|......+++|+.++|
T Consensus 137 -----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 137 -----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999999987655 45666789999999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
.+|++++.|+.+++.+
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998853
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=344.63 Aligned_cols=206 Identities=19% Similarity=0.203 Sum_probs=151.6
Q ss_pred cccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE
Q 001228 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928 (1119)
Q Consensus 849 ~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i 928 (1119)
++.|..+.+.++.+.++. +..+++.++++.++.-+.++++|+||+||||+++++.|..+ +..|-+.+
T Consensus 357 ~~~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~ 423 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGR 423 (582)
T ss_pred cCCCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeee
Confidence 345567788887765431 12268999999999999999999999999999999998654 24565554
Q ss_pred CCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCC
Q 001228 929 SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGL 1007 (1119)
Q Consensus 929 ~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~L 1007 (1119)
.+ +++++|..|...-+..+.|.+--.. ...+ ... .++.+.+-+..+||.. ++... +.+|
T Consensus 424 ~~--------r~ri~~f~Qhhvd~l~~~v~~vd~~-~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~L 483 (582)
T KOG0062|consen 424 HP--------RLRIKYFAQHHVDFLDKNVNAVDFM-EKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASL 483 (582)
T ss_pred cc--------cceecchhHhhhhHHHHHhHHHHHH-HHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----cccc
Confidence 43 4568999997665444444332222 2222 111 2344677888999864 33322 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||-||++|.....+|.+|+|||||+.||..+-..+-++|++. +..||+|||+.+ -+-..|+++++.++|...-
T Consensus 484 SGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 484 SGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999999999999999987 468999999964 3666799999998654444
Q ss_pred EecC
Q 001228 1088 YAGP 1091 (1119)
Q Consensus 1088 ~~g~ 1091 (1119)
..|.
T Consensus 560 ieg~ 563 (582)
T KOG0062|consen 560 IEGG 563 (582)
T ss_pred eecc
Confidence 4444
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=336.63 Aligned_cols=203 Identities=24% Similarity=0.369 Sum_probs=172.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++..++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 469999999999999999999999999999999999865 458999999987642 2345679999999988889
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+||+||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987542111 122334455678999999998776665 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQ 221 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999877999999999975 46677999999975 8899988754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=314.73 Aligned_cols=210 Identities=22% Similarity=0.372 Sum_probs=181.2
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
++++++++||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++.... +..+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999998 9999999999987654 34599999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
-.|||+|||.-....+.... . ..+.+...+.+|+.|+|.++++..-..
T Consensus 92 r~LtV~dNi~~vlE~~~~d~---------------------~-----------~~~~~~~l~~LL~ef~i~hlr~~~a~s 139 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL---------------------K-----------KAERKEELDALLEEFHITHLRDSKAYS 139 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch---------------------h-----------HHHHHHHHHHHHHHhchHHHhcCcccc
Confidence 99999999976544321100 0 011233467899999999999988776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||+|+.|||||+.+|+.++||||++|+||.+..+|.+.++.+++ .|.-++++- |...|+..+|||.+++
T Consensus 140 -----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITD-HNVREtL~i~dRaYIi 212 (243)
T COG1137 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITD-HNVRETLDICDRAYII 212 (243)
T ss_pred -----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcc-ccHHHHHhhhheEEEE
Confidence 999999999999999999999999999999999999999999999976 466666654 5667999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=367.78 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=179.3
Q ss_pred ccccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEE
Q 001228 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIK 927 (1119)
Q Consensus 848 ~~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~ 927 (1119)
.|.-...++|+|++|.++. +...+|+|+|++|+|||.+||+|+||||||||+|+|.|+.+ +..|+|.
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 3445567999999998753 22359999999999999999999999999999999999877 4689999
Q ss_pred ECCccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------ccc
Q 001228 928 ISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDS 997 (1119)
Q Consensus 928 i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~ 997 (1119)
+||++++ ...+|+.+|||+|++.++.. |++||+.++.. +.+ ++.+.++++..+..+. .+.
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p-----~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNP-----EAT----DEEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999864 46788999999999988764 99999987531 222 2234455555544332 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
.+++. ..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|.+.. +|+|+|+++|+++ ++..||++
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 44443 45799999999999999999999999999999999999999999999986 5899999999974 78899999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|+ +|+++..|+..
T Consensus 678 iVl~-~Gkiv~~gs~~ 692 (709)
T COG2274 678 IVLD-QGKIVEQGSHE 692 (709)
T ss_pred EEcc-CCceeccCCHH
Confidence 9997 58999999854
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=331.94 Aligned_cols=193 Identities=29% Similarity=0.389 Sum_probs=164.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 469999999999999999999999999999999999865 458999999987642 124567999999999888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++||||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988654321 22233445688999999998766665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|+|||+.++..+.+.|+++.++|+|||++||+++ ++...||++++|.+|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 9999999999999999998777999999999975 566679999999753
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=350.06 Aligned_cols=206 Identities=30% Similarity=0.419 Sum_probs=177.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875432 3467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.+...+... . + ....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------R----------E--------------IEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhCCChhh----
Confidence 9999987654332100 0 0 011245678899999999999987
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++.++.+.|+++++ .|.|++++.|+. .++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 478888777655 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++++|+++++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=344.64 Aligned_cols=219 Identities=21% Similarity=0.319 Sum_probs=177.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 5677777654310 0011359999999999999999999999999999999999876 45899999998764
Q ss_pred h-----hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCCCCCC
Q 001228 935 Q-----ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~-----~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~ 1006 (1119)
. ...++.+||++|++. .+...||+||+.|..... ....++..+.+.++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 244678999999974 334579999998865432 233445556788999999996 555655 457
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++ ++...||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 46678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99888753
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=332.61 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=170.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++..|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 469999999999999999999999999999999999865 458999999987642 2345679999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+. .......+.++++++.++|.+..++. +.+||+|||||++|||||+.+|++|||||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654332 22233345678999999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.+++.+.+.|+++++ ++|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999875 699999999975 46677999999975 788888764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=330.85 Aligned_cols=205 Identities=38% Similarity=0.670 Sum_probs=170.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC-CCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~-~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +++.+|+|.++|.+......++.++|++|++.+++.+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 569999999999999999999999999999999999764 1235899999998775555667899999999999999999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHH-HHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDE-VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+..................+++ .++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998754332211112222233455 88889888766655 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.++..+.+.|+++.++|.|||++||++..++.+.||++++|.+ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999998877999999999974367889999999975 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=337.94 Aligned_cols=202 Identities=27% Similarity=0.391 Sum_probs=170.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----------hhhcceEEEEccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----------ETFARVSGYCEQN 948 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----------~~~~~~~gy~~q~ 948 (1119)
..+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 469999999999999999999999999999999999865 457999999986532 2245679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.+++..|+.||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCChHHHHHHHHHHHHhcCCCEE
Confidence 998889999999987543211 122333445678899999998766665 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999877999999999975 46678999999975 789888874
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=344.98 Aligned_cols=219 Identities=23% Similarity=0.306 Sum_probs=177.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++.. ......+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 5677877765311 00113599999999999999999999999999999999998763 4799999876531
Q ss_pred ---------------------------hhhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHH
Q 001228 935 ---------------------------QETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986 (1119)
Q Consensus 935 ---------------------------~~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l 986 (1119)
....++.+||++|++. .+...||+||+.|+.... ....++..+.+.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 1234677999999863 344579999998865432 233445556789999
Q ss_pred HHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 987 ELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 987 ~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
+.++|. ++.++. +..||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1066 PSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1066 ~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++ .+.+.||++++|++ |++++.|+..
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 75 46788999999975 7999988753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=336.23 Aligned_cols=202 Identities=26% Similarity=0.369 Sum_probs=171.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||+|++||+++|+||||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 459999999999999999999999999999999999865 457999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
++||+.+...++. .......+.+.++++.+++.+ ..++. +.+||+|||||++|||||+.+|++|||||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999987654331 223334556889999999985 55554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 221 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPD 221 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999764 899999999975 56778999999975 7898888753
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=337.49 Aligned_cols=200 Identities=29% Similarity=0.412 Sum_probs=170.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+.+||++|++.+++..||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 469999999999999999999999999999999999865 458999999987642 2345899999998888899999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
|+.+....+. .......+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 90 NVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred HHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 9987643321 22333445688999999998766665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCC
Q 001228 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~ 1092 (1119)
.++..+.+.|+++++ .|+|||++||+++ .+...||++++|.+ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999854 5899999999975 56778999999974 6899888754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=332.33 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 45999999999999999999999999999999999999886 9999999988754322 3579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+....+...+ ++.+ +....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPEA-------------EIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999886432211000 0000 0011345688999998888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999765578888888776 467889999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=340.62 Aligned_cols=214 Identities=27% Similarity=0.367 Sum_probs=177.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 56777765442 12359999999999999999999999999999999999865 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||.||+.|..... ........+.+.++++.++|.+..++. +..||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHH
Confidence 3 234567999999973 345689999998764321 223334445688999999998877776 3579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|.+ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999975 45678999999975 7899888
Q ss_pred CC
Q 001228 1091 PL 1092 (1119)
Q Consensus 1091 ~~ 1092 (1119)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 75
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=331.39 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=163.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~t 956 (1119)
+..+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. ..++.++|++|++.+. +..|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 3469999999999999999999999999999999999865 45899999997653 3456799999998763 3479
Q ss_pred HHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 957 VYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 957 v~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+||+.+....... .........+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999875432110 0011123345688999999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ | +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999877999999999975 46678999999964 5 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=336.53 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=171.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 469999999999999999999999999999999999865 458999999987532 12346799999999888889
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|+.||+.+...++. ..........++++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 94 SVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFA 166 (241)
T ss_pred cHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987543221 122233455688899999998766655 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+.+.++++.++|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 99999999999999998877999999999975 57788999999975 7899888754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=329.78 Aligned_cols=193 Identities=26% Similarity=0.388 Sum_probs=162.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~~~ 955 (1119)
+.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999865 458999999986532 334567999999975 36678
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|++||+.+..... ........+.++++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 112233345678899999998766665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|||+.+++.+++.|++++++|+|||++||+++ ++...||++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999975 466679999999753
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=331.23 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC----CCcccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d~-~~~ 258 (1119)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.++|.+.. ....++.+|||+|++. .+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 899999999865 2334688999999963 345
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.-||.|.+.|+.+..+.... +...+++.+++.+||.+.++..+-+
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCCccc-
Confidence 67999999998776553210 1123578899999999999988877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++.|+ ...+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999988766787777654 568999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=339.51 Aligned_cols=227 Identities=20% Similarity=0.301 Sum_probs=183.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 36777776543 23469999999999999999999999999999999999865 4589999999875
Q ss_pred Chh------hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 NQE------TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~~~------~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
... ..++.++|++|++.+++.+|+.||+.+...... ........+.+.++++.+++.+..++. +..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhC
Confidence 321 235679999999988899999999987543211 112333445678899999998777766 3579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|||||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++||+++ ++...||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999975 56778999999975 899
Q ss_pred EEecCCCC----ChHHHHHHhh
Q 001228 1087 IYAGPLGH----ESHKLIEYFE 1104 (1119)
Q Consensus 1087 ~~~g~~~~----~~~~l~~~f~ 1104 (1119)
++.|+..+ ....+.+|+.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 223 VAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred EEeCCHHHHhcCCcHHHHHHHH
Confidence 99887542 1123456665
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=328.97 Aligned_cols=200 Identities=31% Similarity=0.436 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999886 999999998875432 24579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KA----------E--------------IRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998754321100 00 0 011245678899999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765577888777665 478899999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=332.20 Aligned_cols=200 Identities=31% Similarity=0.454 Sum_probs=166.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh-hcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gy~~q~~~~~~~ 954 (1119)
+..+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 3469999999999999999999999999999999999876 458999999987532 12 24569999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc-CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+|++||+.+...... .......+.++++.+ ++.+..++. +..||+|||||++|||||+.+|++|+||||
T Consensus 90 ~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 90 LTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred CcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999988654321 112234466777777 466555554 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999877899999999975 46778999999975 789888763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=328.65 Aligned_cols=197 Identities=35% Similarity=0.513 Sum_probs=167.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
..+|+|+||++++| +++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 999999999999999999999865 458999999987542 2345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.||+.+...++. ....+..+.++++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654432 22233345678999999998776665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+.+++.+.+.|+++++ +.|||++||+++ .+...+|++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999976 599999999975 45667999999975 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=329.39 Aligned_cols=194 Identities=26% Similarity=0.375 Sum_probs=165.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 458999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+|+.||+.+....+. ...+...+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|+||+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654321 22333455678999999998776665 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
|+|||+.+++.+.+.|+++.++|+|||++||+++ .+...||++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 45667899999975 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=305.15 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=177.3
Q ss_pred CCCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEec
Q 001228 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYIS 251 (1119)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~ 251 (1119)
+.+....++|+|||+.|++||++-|+||||||||||||.|.+...|+ .|+|.+||+++.... .+|.||+|+
T Consensus 9 k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVF 85 (223)
T COG2884 9 KAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVF 85 (223)
T ss_pred hhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEe
Confidence 34444566999999999999999999999999999999999999997 999999999987543 258899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc
Q 001228 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1119)
Q Consensus 252 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 331 (1119)
|+..+++..||.||+.|+.+..|... .+.+.++.++|+..||.+.+
T Consensus 86 QD~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~ 131 (223)
T COG2884 86 QDFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKA 131 (223)
T ss_pred eeccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhh
Confidence 99999999999999999887765321 11234567899999999999
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+...-. |||||+|||+||||++.+|++|+-||||-.||+..+.+|++.+.++.+ .|.|+++++|. ..-+-++-
T Consensus 132 ~~lP~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~ 204 (223)
T COG2884 132 RALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMR 204 (223)
T ss_pred hcCccc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhcc
Confidence 888776 999999999999999999999999999999999999999999999975 68888888764 44555667
Q ss_pred CeEEEEcCCeEEEEc
Q 001228 412 DDIILLSEGQIVYQG 426 (1119)
Q Consensus 412 D~i~lL~~G~iv~~G 426 (1119)
-+++.|++|+++...
T Consensus 205 ~rvl~l~~Grl~~d~ 219 (223)
T COG2884 205 HRVLALEDGRLVRDE 219 (223)
T ss_pred CcEEEEeCCEEEecc
Confidence 799999999998754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=351.55 Aligned_cols=206 Identities=29% Similarity=0.418 Sum_probs=172.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1119)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. +++.++||+|++.+|+. |
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-T 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-T 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-c
Confidence 6899999999999999999999999999999999999986 999999999987665 56899999999999985 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+||||.|+..-. .+.++.+..+.. .+.+.+.-++..||.+|+ .++
T Consensus 411 ireNi~l~~~~~----------------------s~e~i~~al~~a------------~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPDA----------------------SDEEIIAALDQA------------GLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCcC----------------------CHHHHHHHHHHh------------cHHHhhcCCCcccchhcc-CCC
Confidence 999998853210 011111111111 112222225677999995 678
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
||||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ ++|++++.|++ +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999987 58999998876 4667899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++.+|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=329.51 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999886 99999999876432 12357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------GA------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 999998864332110 00 0112356789999999888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999998765467877776665 47889999999999999
Q ss_pred EEEEcChhHH
Q 001228 422 IVYQGPRDNV 431 (1119)
Q Consensus 422 iv~~G~~~~~ 431 (1119)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=332.89 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=168.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ....+.++|++|++.+++..|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 469999999999999999999999999999999999865 458999999987532 1223579999999988889999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.+....+ ........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|+||||||||+||
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 99998765432 122233445678899999998776665 3479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|++ |++++.|+..
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~~~ 217 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGAAA 217 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCCHH
Confidence 99999999999999974 5899999999975 34 45999999975 7888888753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=320.69 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=185.1
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1119)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. ..++..+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4678999999999999999999999999999999999999997 99999999999887653 4588999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
++|||.||+..++..+.. +.......+.. .+ ..+.......+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~-----------e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KE-----------EREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccch--------hh-----------HHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999987664421 00000000000 00 011223456799999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||+|||||+.||+||+.+|++||||||.+||.+..+.++.+.++++.+..+.|+ +.+-|...-++++||+|++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~ti-llIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTI-LLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEE-EEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999987545555 45567788999999999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=345.06 Aligned_cols=219 Identities=23% Similarity=0.341 Sum_probs=178.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ......+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 47899988766411 0012359999999999999999999999999999999999876 4589999999765
Q ss_pred Ch-------------------hhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC
Q 001228 934 NQ-------------------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992 (1119)
Q Consensus 934 ~~-------------------~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~ 992 (1119)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... .....+....+.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23567899999997 3444 59999998864322 223344455688999999996
Q ss_pred -CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 993 -SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 993 -~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
++.++. +.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 4579999999999999999999999999999999999999999999999777999999999975 466
Q ss_pred HhhceEeEEecCcEEEEecCCC
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
..||++++|.+ |++++.|+..
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 78999999975 7999998754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=329.15 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=165.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
..+|+++||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 469999999999999999999999999999999999865 458999999987631 2345679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|+.||+.+...... ........+.+.++++.+++.+..++. +.+||+|||||++|||||+.+|++|||||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987642111 122233445678899999998776666 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++++|++ |+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999877999999999975 56678999999975 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=340.65 Aligned_cols=219 Identities=25% Similarity=0.351 Sum_probs=177.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 4677877765310 0011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ..+++.+||++|++. .+...||.|++.|..... .....+.++.+.++++.++|. ++.++. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 235678999999873 233469999999875432 223445556788999999995 455554 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
.||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|.+ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999975 46678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 222 i~~~g~~~ 229 (288)
T PRK13643 222 IISCGTPS 229 (288)
T ss_pred EEEECCHH
Confidence 99998754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=345.70 Aligned_cols=227 Identities=25% Similarity=0.396 Sum_probs=187.5
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcCCCC
Q 001228 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (1119)
Q Consensus 129 ~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 208 (1119)
..+..|.-.|+|+|++.+-. .+++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46777788899999887631 234599999999999999999999999
Q ss_pred CHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHh
Q 001228 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (1119)
Q Consensus 209 GKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 285 (1119)
||||+|++|.+..+ . +|+|.+||+++.+... ++.||||||+..+|.+ ||.+||.++..-.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa------------ 452 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA------------ 452 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc------------
Confidence 99999999999998 4 8999999999877654 6789999999999976 9999999863211
Q ss_pred hHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC--CChHHHHHHHHHHHHhcCCcE
Q 001228 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLVGTANV 363 (1119)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG--LSGGqkkRvsia~al~~~p~i 363 (1119)
..+...++|...+ .-|. ...|++.++|.||+ || |||||||||++|||++.+|+|
T Consensus 453 -------------s~eeV~e~~k~a~-----~hd~---i~~l~~GY~T~VGe---rG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 453 -------------SDEEVVEACKRAG-----LHDV---ISRLPDGYQTLVGE---RGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred -------------CHHHHHHHHHHcC-----cHHH---HHhccccchhhHhh---cccccccchHHHHHHHHHHhcCCCe
Confidence 1111222222111 1121 23478899999998 55 899999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001228 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 364 lllDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++|||||.||+.|..++++.+.+.. .++|+|+..|.. .+..-||+|++|++|++...|+.++++.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999843 489999998865 5788999999999999999999999976
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=307.95 Aligned_cols=227 Identities=27% Similarity=0.393 Sum_probs=189.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|+.+|++|++ .++++|++||++++|||++||+|||||||||||++|+|... +..|++.++|.+.+
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChh
Confidence 3556777655 34679999999999999999999999999999999999776 35799999999864
Q ss_pred h---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
. .+.++..+.+||+..+.+..||+|-+.++..-... .....+..+.++++|+..++.++..+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 45677889999999998889999999998543211 1122244456889999999999887764 4799999
Q ss_pred HHHHHHHHHHhcC------CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1012 RKRLTIAVELVAN------PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1012 rqrl~iA~aL~~~------p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||.+||.|++- +++||||||||.||...+..++++.++++++|..|++|-||++. ...+||++++|. +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 9999999999763 46899999999999999999999999999999999999999874 677899999997 589
Q ss_pred EEEecCCCC--ChHHHHHHhh
Q 001228 1086 VIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1086 v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
++..|++.+ ..+.+...|.
T Consensus 219 v~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 219 VIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred EeecCCHHHhcCHHHHHHHhC
Confidence 999998754 4566888886
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=329.80 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=166.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 469999999999999999999999999999999999875 458999999987532 1 24567999999998888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+....+ .....+..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++||||||
T Consensus 93 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998865433 122333445678899999998766665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|+|||+.+++.+.+.|+++.++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999777899999999975 46667899999975 6664
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=330.81 Aligned_cols=200 Identities=25% Similarity=0.300 Sum_probs=162.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCC--CCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~--~~~ 952 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 59999999999999999999999999999999999865 458999999987642 23456799999998 456
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+||+||+.+....... ..........+.++++.+++. +..+.. +..||+|||||++|||+|+.+|+|||||
T Consensus 97 ~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 789999999876443211 111111122235788999985 455554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||+|||+.+++.+.+.|++++++ |+|||++||+++ .+...||++++|.+ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999765 899999999975 45668999999975 7887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=339.38 Aligned_cols=216 Identities=26% Similarity=0.384 Sum_probs=179.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 467888776542 12459999999999999999999999999999999999876 4589999999876
Q ss_pred C-----hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 N-----QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~-----~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
. ...+++.+||++|++.. +...|++||+.+..... .....+..+.+.++++.++|.+..++. +..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 12355779999999742 34579999998864322 223344456688999999998877766 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 45668999999975 789
Q ss_pred EEecCCC
Q 001228 1087 IYAGPLG 1093 (1119)
Q Consensus 1087 ~~~g~~~ 1093 (1119)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9998754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=342.32 Aligned_cols=219 Identities=24% Similarity=0.293 Sum_probs=177.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++... .....+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56778776653110 011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ..+++.+||++|++. .+...||+||+.|+.... .....+..+.++++++.++|. ++.++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 234567999999873 233579999998875322 223344456788999999996 555655 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++||+++ ++...||++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999764 899999999975 5677899999997 58
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999988743
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.71 Aligned_cols=205 Identities=28% Similarity=0.377 Sum_probs=174.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 258 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999986 999999999875432 1357999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+||+.+.....+.. . . .....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------K----------A--------------EIEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999998764322110 0 0 0011346688999999888887766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888887775 47888999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=330.30 Aligned_cols=173 Identities=25% Similarity=0.318 Sum_probs=136.7
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
|+-=.++|..||+++++||||-||||+.++|+|..++ .+|. .. .-+++|-||--.--...||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 4444577889999999999999999999999997663 4554 11 124788888766566789998765
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
-...-+.. ..-+..++++-++|+++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 33211111 1123457888899999988874 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1043 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1043 ~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
-.+-++||+... +++|.+++-||..+ +-...|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999875 48999999999753 555678888874
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=327.51 Aligned_cols=201 Identities=27% Similarity=0.353 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999988753 346799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+... . .....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 99988643221100 0 0011346688999998888888876 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~--~G~ 421 (1119)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999986655788888877764 7788999999999 799
Q ss_pred EEEEcChh
Q 001228 422 IVYQGPRD 429 (1119)
Q Consensus 422 iv~~G~~~ 429 (1119)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=336.33 Aligned_cols=208 Identities=23% Similarity=0.316 Sum_probs=176.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1119)
..+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999886 9999999988754321 24699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 334 (1119)
.+++.+||+||+.+.....+... . .....++.+++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 99999999999988643221100 0 0011346688999999888888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++
T Consensus 158 ~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 877 9999999999999999999999999999999999999999999998765578888887765 4788999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|+++++|+.+++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=342.67 Aligned_cols=206 Identities=30% Similarity=0.412 Sum_probs=175.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999886 999999998764321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.+...+... .+ ....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMST--------------------RE--------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 9999987543221100 00 011245678899999988998877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999876 477888877765 48889999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.51 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=174.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++..|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 3469999999999999999999999999999999999865 45899999998764322 25799999999888889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .. ...+.++++.+++.+..++. +..||+|||||++||||++.+|++|+|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654332 11 23467899999998777765 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
+.+++.+++.|+++.++|+|||++||+++ ++.+.||++++|.+ |++++.|+... .+.+.+.|.
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~-~~~~~~~~~ 219 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK-SENLEKLFV 219 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh-cccHHHHHH
Confidence 99999999999999877999999999975 46678999999975 78999998653 334555554
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=339.13 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=177.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-----ccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999876432 2467999999863 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 335 (1119)
..+||+||+.|.....+.. . .+....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------E------------------------EEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhccCCc
Confidence 4579999998854321110 0 00112356789999997 5677777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|+++|+. .++.++||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 66 9999999999999999999999999999999999999999999999775577888877764 57888999999
Q ss_pred EEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23345655543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=334.37 Aligned_cols=214 Identities=21% Similarity=0.282 Sum_probs=176.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcc
Confidence 56777765442 3469999999999999999999999999999999999865 35799999997653
Q ss_pred h----------------hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-cc
Q 001228 935 Q----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-DS 997 (1119)
Q Consensus 935 ~----------------~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~ 997 (1119)
. ..+++.++|++|++.+++.+|++||+.+...... ........+.+.++++.+++.+.. ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1 2345679999999999999999999987542111 122334456688999999997653 44
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
. +..||+|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||++
T Consensus 149 ~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i 222 (257)
T PRK10619 149 Y-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 222 (257)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4 4579999999999999999999999999999999999999999999999877999999999975 466679999
Q ss_pred eEEecCcEEEEecCC
Q 001228 1078 LLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~ 1092 (1119)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 223 IFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99975 789888874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.13 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=163.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh---hc-ceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET---FA-RVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~---~~-~~~gy~~q~~~~~ 952 (1119)
+.+|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 469999999999999999999999999999999999866 458999999987532 11 22 5699999999888
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+..|++||+.+....+. ....+..+.+.++++.+++.+..++. +..||||||||++|||+|+.+|+||||||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654321 12233345678899999998776665 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
||+|||+.++..+.+.|++++++ |+|||++||+++ ....+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEec
Confidence 99999999999999999999754 899999999975 3456899999975 6664
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=330.18 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999886 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+... . ... .. .... .+....++++++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-~------~~~---~~-~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-L------LLA---RA-RREE-------------REARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhccccc-c------ccc---cc-cccH-------------HHHHHHHHHHHHHcCccchhhCChhh--
Confidence 999999988644221000 0 000 00 0000 00112356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++. ++.++||++++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876 5788888877664 78899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.99 Aligned_cols=216 Identities=24% Similarity=0.316 Sum_probs=179.1
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. ....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 6777877655310 11359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||+||+.|..... ....++..+.++++++.++|.+..++.+ ..||+|
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHH
Confidence 2 345567999999974 567789999998864322 2334445567899999999988777763 479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++..
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~ 221 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVEST 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999865 999999999975 34 67999999975 899988
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 222 g~~~ 225 (279)
T PRK13650 222 STPR 225 (279)
T ss_pred CCHH
Confidence 8753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.62 Aligned_cols=217 Identities=22% Similarity=0.238 Sum_probs=176.5
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 6 LSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 5677766543 23469999999999999999999999999999999999865 45899999998764
Q ss_pred hh---h-hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-------C-----CccHHHHHHHHHHHHHHcCCCCccccc
Q 001228 935 QE---T-FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-------S-----DVDTKKRKMFVDEVMELVELKSLNDSM 998 (1119)
Q Consensus 935 ~~---~-~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-------~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~ 998 (1119)
.. . .+..++|++|++.+++.+||+||+.+....... . .....+..+.+.++++.+++.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 21 2 234589999999999999999999885421100 0 001112334678889999998776666
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceE
Q 001228 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 999 ~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.+||+|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++
T Consensus 151 -----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i 224 (255)
T PRK11300 151 -----AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRI 224 (255)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999975 566789999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|++ |++++.|+..
T Consensus 225 ~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 225 YVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEC-CeEEecCCHH
Confidence 99975 7899888754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=334.97 Aligned_cols=216 Identities=23% Similarity=0.318 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCC-CCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHD-LHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d-~~~~~ 259 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999987 999999999876432 235799999997 36777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.+..+.. .. +....++.+++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HE------------------------EMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998864322110 00 0112356789999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755789998888864 55 58999999999
Q ss_pred CeEEEEcChhHHHH---HHHhcCCCCC
Q 001228 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
|+++..|+++++.+ .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999988753 2344455433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=336.52 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=180.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCC--C
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD--L 255 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d--~ 255 (1119)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1245799999986 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+++ .||.|++.|+....+.. .. + ....+.++++.+||. ...++.
T Consensus 97 l~~-~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNFGIP----------KE----------K--------------AEKIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred ccc-chHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhccCC
Confidence 454 69999999875432210 00 0 112356788899996 456777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|
T Consensus 142 ~~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri 214 (288)
T PRK13643 142 PFE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYV 214 (288)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEE
Confidence 665 999999999999999999999999999999999999999999999875 478888887765 5788999999
Q ss_pred EEEcCCeEEEEcChhHHH---HHHHhcCCCCCCCCChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFL 452 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 452 (1119)
++|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999999999874 34556777777654444433
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=332.29 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=168.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999986521 127999999987642 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|++||+.+....+. ........+.+.++++.+++. +..++. +..||||||||++|||||+.+|++
T Consensus 94 ~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88 999999988654331 112334455688999999997 444444 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999876 599999999975 56778999999975 789888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=339.65 Aligned_cols=202 Identities=25% Similarity=0.308 Sum_probs=169.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCC-C
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDI-H 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~-~ 951 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 359999999999999999999999999999999999876 458999999987532 234567999999973 2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+..+||.||+.|....+ ....++..+.+.++++.++|. ++.++. +..||+|||||++|||||+.+|++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999998764332 123344455688999999996 566665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+.+.|+++.++|.|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999777999999999975 56778999999975 7899888754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=331.58 Aligned_cols=214 Identities=29% Similarity=0.390 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999886 999999998876432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+...... . ... .+ .+..+ . .....++.+++.+||++..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~~~---~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-TWR---SL------FGLFP-K--------------EEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-hhh---hh------cccCc-H--------------HHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999987532110 0 000 00 00000 0 0112345678899998877877766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=341.45 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=180.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|++..++............+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 46777776554321000000001123469999999999999999999999999999999999876 3589999999876
Q ss_pred Chh------hhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 934 NQE------TFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~~------~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
... .+++.++|++|++ .++|.+||.|++.+...... .....++..+.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2456799999998 57889999999988654321 1233445566788999999994 345555 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|++||+||||+|||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999975 45667999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999998753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=334.05 Aligned_cols=207 Identities=22% Similarity=0.297 Sum_probs=174.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 478888876542 2459999999999999999999999999999999999865 4589999998764
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..++.++|++|++.+++..||+||+.+... . ..+..+.++++.+++.+..++. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999988888999999987421 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|++|||+|+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ .+...||++++|.+ |++++.++.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 4899999999975 46678999999975 789888865
Q ss_pred C
Q 001228 1093 G 1093 (1119)
Q Consensus 1093 ~ 1093 (1119)
.
T Consensus 219 ~ 219 (257)
T PRK11247 219 D 219 (257)
T ss_pred c
Confidence 3
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=324.45 Aligned_cols=200 Identities=29% Similarity=0.398 Sum_probs=170.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35999999999999999999999999999999999999886 9999999988754322 3579999999999989999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KD------------------------EIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99998764322110 00 0012346688999999888888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865578888888775 478889999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=334.65 Aligned_cols=217 Identities=27% Similarity=0.363 Sum_probs=176.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
++.+|+||||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 3569999999999999999999999999999999999865 458999999986532 23456799999999888889
Q ss_pred CHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 956 TVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 956 tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
|+.||+.++..... ..........+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521100 00111123345678899999998777765 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |+++..|+..+ ....+.+.|+
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~~~~~~~~~~~~ 236 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPEEVMTPGLLRTVFD 236 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHHHhcCHHHHHHHhC
Confidence 999999999999999998777999999999975 57788999999975 78888887543 2234566665
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=331.17 Aligned_cols=214 Identities=25% Similarity=0.347 Sum_probs=173.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 469999999999999999999999999999999999865 4589999999875321 1234699999999999999
Q ss_pred CHHHHHHHHHHhhcC-----CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 956 TVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
|++||+.+....... .....+.....++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999875421100 0011223445688999999998776665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHh
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYF 1103 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f 1103 (1119)
||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|.+ |++++.|+... ....+.++|
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~~~~~~~~~~~~~ 239 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLDQVQADPRVIEVY 239 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHHHHhcCHHHHHHh
Confidence 999999999999999999999875 799999999975 46678999999975 78888887542 123355555
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=332.18 Aligned_cols=212 Identities=23% Similarity=0.341 Sum_probs=174.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 70 (237)
T PRK11614 6 LSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDIT 70 (237)
T ss_pred EEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecC
Confidence 67777765432 3469999999999999999999999999999999999865 45899999998754
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc-CCCCccccccCCCCCCCCCH
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..++.++|++|++.+++..||.||+.+..... ......+.++++++.+ ++.+..+.. +..||+
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCH
Confidence 31 23567999999999888899999998754221 1122233466777777 465544444 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||+|+.+|+||+|||||+|||+.+++.+.+.|+++.++|+|||++||+++ ++.+.||++++|.+ |++++.
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 218 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLE 218 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 57788999999975 799999
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 219 ~~~~ 222 (237)
T PRK11614 219 DTGD 222 (237)
T ss_pred CCHH
Confidence 8864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=339.87 Aligned_cols=218 Identities=22% Similarity=0.336 Sum_probs=176.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++... ...+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 56777776653100 011359999999999999999999999999999999999876 45899999998763
Q ss_pred h-------hhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 935 Q-------ETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 935 ~-------~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
. ..+++.+||++|++. +++ .||.||+.|..... .....+..+.+.++++.++|. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 235678999999863 444 59999998864322 223344556788999999996 566655 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..||+|||||++|||||+.+|+||||||||+|||+.++..++++|+++.+ .|+|||++||+++ ++.+.+|++++|.+
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999975 46678999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 222 G~i~~~g~~~ 231 (286)
T PRK13646 222 GSIVSQTSPK 231 (286)
T ss_pred CEEEEECCHH
Confidence 7899888753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=331.02 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=170.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---------hhhhcceEEEEccCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---------QETFARVSGYCEQNDI 950 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---------~~~~~~~~gy~~q~~~ 950 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ....++.++|++|++.
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 469999999999999999999999999999999999875 45899999998652 1234567999999999
Q ss_pred CCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 951 HSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+++.+|+.||+.+.. ... ..........+.++++.+++.+..++. +..||+|||||++|||||+.+|+||+
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999997532 221 122233345678899999998777766 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 226 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999877999999999975 46677999999975 8899988753
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=340.62 Aligned_cols=205 Identities=29% Similarity=0.440 Sum_probs=176.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999998875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.||+.|.+++.+... . +....++.+++.+||++..++.+++
T Consensus 92 v~e~l~~~~~~~~~~~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG--------------------Q--------------LLKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH--------------------H--------------HHHHHHHHHHHHCCCchHhcCchhh----
Confidence 9999998765432110 0 0011356789999999999988877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+++|+++||||||+|||+.++..+.+.|++++. ++|++++.|++ .++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999853 67777776665 58999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.08 Aligned_cols=195 Identities=24% Similarity=0.348 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999886 999999998875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.|..+..+.. .. .....++.+++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------PR------------------------DANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999998864432110 00 0012346688999999888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 377888777765 4778899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=328.10 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=173.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999886 9999999988754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . . .....++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------K----------K--------------EREEKLEELLEEFHITHLRKSKASS-- 133 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------H----------H--------------HHHHHHHHHHHHcCChhhhhCChhh--
Confidence 99999998753321110 0 0 0012346788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++
T Consensus 134 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~ 208 (232)
T cd03218 134 ---LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYE 208 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999876 4778888777654 88899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=332.59 Aligned_cols=215 Identities=26% Similarity=0.330 Sum_probs=174.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.+ +++.+|+|+||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46777876543 234599999999999999999999999999999999997642 12589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+ ........+.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988877 89999998865332 1223334456788999998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++ ++...||++++|.
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 228 ~-G~i~~~~~~~ 238 (258)
T PRK14268 228 M-GELIEFGQTR 238 (258)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999988753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=332.08 Aligned_cols=203 Identities=25% Similarity=0.337 Sum_probs=171.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----------------hhhcceEE
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----------------ETFARVSG 943 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----------------~~~~~~~g 943 (1119)
..+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 469999999999999999999999999999999999865 458999999986531 13456799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001228 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA 1023 (1119)
Q Consensus 944 y~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 1023 (1119)
|++|++.+++..|+.||+.+...... ........+.+.++++.+++.+..++. +..||+|||||++|||||+.
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHc
Confidence 99999999999999999987532111 122334455688999999998776665 35799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |++++.|+..
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPD 232 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999998764 899999999975 46678999999975 8999888753
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=326.92 Aligned_cols=203 Identities=29% Similarity=0.415 Sum_probs=171.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999886 99999999887532 12456999999999998999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+..+..+... . + ....++.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S----------E--------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999988644322100 0 0 011245688899998888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 477777777664 7778999999999999
Q ss_pred EEEEcChhHH
Q 001228 422 IVYQGPRDNV 431 (1119)
Q Consensus 422 iv~~G~~~~~ 431 (1119)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=329.96 Aligned_cols=206 Identities=28% Similarity=0.389 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999886 999999998875432 245799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc--cccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 338 (1119)
||+||+.+..+..+.. . .+ ....+..+++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWP----------K----------EK--------------IRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 9999998754322110 0 00 0113456888999985 66777665
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888887776 47789999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=374.17 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=107.8
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCC
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1026 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~---~~p~ 1026 (1119)
.+...||.|+|.+...-..+.....++..+.+ ++++.++|..+ .++. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999887542211111223334445 58889999876 5665 3579999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+|||||||+|||+.+...++++|++++++|.|||+++|+++ ....+|++++|. .+|++++.|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999975 448899999995 368999998753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=337.93 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=176.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1119)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999986 99999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
.+...||+||+.|+.+..+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EE------------------------DAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCChhhhhCC
Confidence 333579999998864322110 00 0112356789999997 567887
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|++.|+. .++.++||+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 776 9999999999999999999999999999999999999999999999776678888887765 4788999999
Q ss_pred EEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 415 ILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
++|++|+++++|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999888742 34444554443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=348.11 Aligned_cols=204 Identities=22% Similarity=0.284 Sum_probs=173.9
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hh----hcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gy~~q~~~ 950 (1119)
+...+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .. .++.+||++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 34458999999999999999999999999999999999876 458999999987642 11 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++.+||+||+.|....+. ....+..+.+.++++.++|.+..++. +.+||||||||++|||||+.+|+||||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998764432 22334456688999999998877776 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++...+|++++|.+ |+++..|+..
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999975 56778999999975 7999888643
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=347.11 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=177.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
...+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999987 9999999998765432 247999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+++.+||+||+.|.....+... . +....++++++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------E------------------------ERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998754332100 0 00123467899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
.+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|++.|++ .++.+++|+|+
T Consensus 163 ~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~ 236 (400)
T PRK10070 163 DE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIA 236 (400)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999998765678888887765 57889999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=334.46 Aligned_cols=201 Identities=24% Similarity=0.373 Sum_probs=170.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~~~t 956 (1119)
.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .+...|
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 59999999999999999999999999999999999866 458999999987542 345567999999974 344679
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|.||+.+..... ....+...+.++++++.++|.+..++. +..||+|||||++|||||+.+|++|||||||+|
T Consensus 96 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt~g 167 (277)
T PRK13652 96 VEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167 (277)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999998765322 223344455688999999998777776 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+.+.++++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 168 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 9999999999999999765 899999999975 56678999999975 7899988754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=331.29 Aligned_cols=217 Identities=25% Similarity=0.296 Sum_probs=175.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 56777765442 245999999999999999999999999999999999986532 34899999998
Q ss_pred cCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++. ...+++.++|++|++.+++.+|+.||+.+....+.. ....+...+.++++++.+++.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 763 123456799999999999999999999876543211 0122333456788999998753 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...||++++|.+
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999865 799999999975 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 224 -G~i~~~~~~~ 233 (253)
T PRK14267 224 -GKLIEVGPTR 233 (253)
T ss_pred -CEEEEeCCHH
Confidence 8999988754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=332.53 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=170.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
++.+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 3469999999999999999999999999999999999865 458999999986532 23456799999999888889
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh------cCCCeEE
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIF 1029 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~------~~p~ill 1029 (1119)
||+||+.+..... ....+...+.++++++.+++.+..++. +..||||||||++|||||+ .+|++|+
T Consensus 92 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 92 TVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 9999998754221 111223345678899999998777766 3579999999999999999 5999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++. ++|.|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 999999999999999999999987 67999999999975 46678999999975 7888888754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.56 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45899999999999999999999999999999999999886 999999998875432 135699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||.||+.+....... .... .....+..+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999875321100 0000 0011245678899999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888887764 5788999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=330.20 Aligned_cols=205 Identities=25% Similarity=0.290 Sum_probs=169.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh---hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~ 953 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 45999999999999999999999999999999999976421 358999999987632 345567999999998888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
.+||.||+.+....+.. .....+..+.++++++.+++.+ ..++. +.+||||||||++|||||+.+|+||+
T Consensus 96 ~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 96 NLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred CCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886433211 1122334456889999999854 23333 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++.+ |+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTR 230 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHH
Confidence 9999999999999999999999864 899999999975 46678999999975 7899888753
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=331.45 Aligned_cols=213 Identities=26% Similarity=0.350 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999886 999999998875432 245699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.++...... ... .+ .+..+ . .....++.+++.+||.+..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TWR---SL------LGRFS-E--------------EDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhccccccc--chh---hh------hcccc-H--------------HHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999874321000 000 00 00000 0 0112346678899998877877766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4678899999999
Q ss_pred cCCeEEEEcChhHH
Q 001228 418 SEGQIVYQGPRDNV 431 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1119)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=326.48 Aligned_cols=195 Identities=26% Similarity=0.387 Sum_probs=165.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999886 999999998875432 13579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|.....+... . .....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 999999999988654321100 0 001234668899999988888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. +||++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 6 99999999999999999999999999999999999999999999997645788888888764 454 9999999
Q ss_pred EcCCeE
Q 001228 417 LSEGQI 422 (1119)
Q Consensus 417 L~~G~i 422 (1119)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=327.95 Aligned_cols=210 Identities=27% Similarity=0.350 Sum_probs=170.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 3469999999999999999999999999999999999876 4589999999875321 124579999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+|+.||+.+....+. .. ..+.+.++++.++ +.+..++. +..||+|||||++|||+|+.+|++|+||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 90 LTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999987643321 11 1223567777776 45555554 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCC-hHHHHHHh
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~-~~~l~~~f 1103 (1119)
|+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.... ...+.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~~~~~~~~~~ 228 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGDELDEDKVRRYL 228 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHHHcChHHHHHHh
Confidence 9999999999999999998764 899999999975 46667999999975 789998886442 33355544
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=324.79 Aligned_cols=203 Identities=25% Similarity=0.386 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 338 (1119)
+||+||+.+....... . + .....+.+++.+ +|++..++.+.+
T Consensus 90 ~t~~~~l~~~~~~~~~---~-------------------~--------------~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARRR---A-------------------K--------------RKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcCc---h-------------------h--------------HHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 9999999886432110 0 0 001234456666 477767777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999999876 467888877665 57889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=328.73 Aligned_cols=208 Identities=23% Similarity=0.269 Sum_probs=167.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh-cceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 356999999999999999999999999999999999974111458999999987542 122 2348999999999999
Q ss_pred CCHHHHHHHHHHhhcCC----CccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 955 VTVYESLLYSAWLRLSS----DVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+|++|++.+........ ........+.+.++++.+++. ...++.+. .+||+|||||++|||+|+.+|++||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~lll 167 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAI 167 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998754322110 012223345678899999996 34554421 2499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||+|||+.+++.+.+.|+++.++|+|||++||+++ .+... ||++++|.+ |++++.|+.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999877999999999975 45555 799999974 789888864
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=333.95 Aligned_cols=204 Identities=26% Similarity=0.328 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1119)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999886 9999999998764322 356999999963 4456
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.....+.. . ......++.+++.+||++..++.+.+
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~-- 138 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------K------------------------DEVERRVEEALKAVRMWDFRDKPPYH-- 138 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCChhh--
Confidence 89999998854321110 0 00112356788999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|++++.|++ .++.++||+|++|++
T Consensus 139 ---LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 ---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQVIVLKE 213 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 78888877764 477789999999999
Q ss_pred CeEEEEcChhHH
Q 001228 420 GQIVYQGPRDNV 431 (1119)
Q Consensus 420 G~iv~~G~~~~~ 431 (1119)
|+++++|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=334.50 Aligned_cols=201 Identities=22% Similarity=0.321 Sum_probs=170.3
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCC-CCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI-HSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~-~~~~ 954 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 459999999999999999999999999999999999866 458999999987632 234567999999975 3567
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
.|+.||+.+..... ........+.+.++++.++|.+..+.. +..||+|||||++|||||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998765322 123344456688999999998877765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..+++.|+++.++|.|||++||+++ ++ ..||++++|.+ |++++.|+..
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999877999999999975 34 66999999975 7899888753
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=322.68 Aligned_cols=198 Identities=31% Similarity=0.451 Sum_probs=168.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCCCH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999886 99999999887542 124679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. . . +....++++++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------G----------D--------------ELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------H----------H--------------HHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998754322110 0 0 0112356788999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 477888887766 478899999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=333.93 Aligned_cols=229 Identities=28% Similarity=0.382 Sum_probs=181.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV-------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE-------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 46777776543 23469999999999999999999999999999999999865 4589999999765
Q ss_pred C---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. ...+++.++|++|++.+++.+|+.||+.+....... .........+.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 233456799999998888889999999875321110 00111223456788999999987666663 47999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|.+ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 56678999999975 78988
Q ss_pred ecCCCC--ChHHHHHHhh
Q 001228 1089 AGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1089 ~g~~~~--~~~~l~~~f~ 1104 (1119)
.|+..+ ....+.++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~ 246 (265)
T PRK10575 229 QGTPAELMRGETLEQIYG 246 (265)
T ss_pred ecCHHHhcCHHHHHHHhC
Confidence 887543 2223455554
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=322.45 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=167.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999886 9999999987654 2346799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+... .+ ....++++++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK--------------------EE--------------ARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 99987544321100 00 012346688999999888888776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQM-ELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998753 67887777665 4788899999999999998
Q ss_pred EEc
Q 001228 424 YQG 426 (1119)
Q Consensus 424 ~~G 426 (1119)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=323.03 Aligned_cols=194 Identities=26% Similarity=0.360 Sum_probs=163.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 458999999987632 1234679999999999899999999987
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
....+. .. .+..++.+.++++.+++.+..++. +..||+|||||++|||||+.+|++|||||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 532211 11 123345688999999998777765 3479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1044 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1044 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
.+++.|+++++ .|+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4899999999975 46677999999975 7877653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=361.61 Aligned_cols=124 Identities=24% Similarity=0.313 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p---~ill 1029 (1119)
.+|+.|++.|...+. . .....+.++.++|..+ .++. +..||||||||+.||++|+.+| +++|
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 368888888765432 1 1124578999999753 4554 3579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|+..
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 99999999999999999999999888999999999974 456899999994 579999999753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=343.66 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=174.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc----cCC---hhh---h-cceEEEE
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY----PKN---QET---F-ARVSGYC 945 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~----~~~---~~~---~-~~~~gy~ 945 (1119)
++...+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|. ++. ... + ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345679999999999999999999999999999999999876 45899999995 221 111 2 2479999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
+|++.+++..||+||+.|+...+ .....+..+.+.++++.++|.+..+..+ .+||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875443 2234455567899999999988877764 479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999765 999999999975 56788999999975 7899988854
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=334.20 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=168.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCC-CC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH-SP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~-~~ 953 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.. ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 459999999999999999999999999999999999876 458999999987531 2345679999999753 34
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+..... .....+..+.+.++++.+++.+..++. +..||||||||++|||+|+.+|+|||||||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 568999998764332 122333445678899999998776665 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+.+.|+++.++|.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999975 46678999999975 789988875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=369.84 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=171.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 35899999999999999999999999999999999999 75 8999999999877653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..+ -.|++..||.||+. +
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhcccccccccccC-C
Confidence 99999988521 111122222222111 11222 24677889999974 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|+||+||||||+||+.+...|.+.|+++.+ ++|+|+..|++ +..+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999998753 78999998887 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=306.27 Aligned_cols=225 Identities=24% Similarity=0.382 Sum_probs=193.7
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEcc
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQ 947 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q 947 (1119)
++.++.++.+.+|++||+.|++|.+++|+|||||||||||.+++++.. ..+|+|.++|.++. ...+++.++.+-|
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 344556677889999999999999999999999999999999998765 45899999998863 3567888888999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 948 ~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+......+||+|-+.|+..-... ....++....++++++.++|+++.|+.. .+||||||||..||+.++++.+.
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSq-GRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQ-GRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccC-CCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcE
Confidence 98888899999999998543322 2334556678999999999999999984 57999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
++||||.++||......+|+.+++++++ |+|||++.||.+. ....+|+++.|++ |+++..|+..+ ..+.|.+.|+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHHhcCHHHHHHHhc
Confidence 9999999999999999999999999876 9999999999764 4456799999975 89999999875 5567888888
Q ss_pred h
Q 001228 1105 V 1105 (1119)
Q Consensus 1105 ~ 1105 (1119)
-
T Consensus 235 m 235 (252)
T COG4604 235 M 235 (252)
T ss_pred C
Confidence 4
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=333.61 Aligned_cols=229 Identities=22% Similarity=0.292 Sum_probs=183.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++ +..+|+||||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 467777776542 3469999999999999999999999999999999999865 4589999999875
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++..++..|++||+.+....... .....+...+.++++++.+++.+..++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 32 23456799999999988889999999765211100 0001123345678999999998776665 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999975 57788999999975 78999
Q ss_pred ecCCCC--ChHHHHHHhh
Q 001228 1089 AGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1089 ~g~~~~--~~~~l~~~f~ 1104 (1119)
.|+..+ ....+.++|.
T Consensus 225 ~g~~~~~~~~~~~~~~~~ 242 (265)
T PRK10253 225 QGAPKEIVTAELIERIYG 242 (265)
T ss_pred eCCHHHHhhHHHHHHHhC
Confidence 887543 1223455554
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=332.17 Aligned_cols=219 Identities=29% Similarity=0.391 Sum_probs=176.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCccCCh--------hhhcceEEEEccCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQ--------ETFARVSGYCEQND 949 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~--------~~~~~~~gy~~q~~ 949 (1119)
+..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 356999999999999999999999999999999999986532 136999999987532 22355799999999
Q ss_pred CCCCCCCHHHHHHHHHHhhcC-----CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 950 IHSPYVTVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
.+++.+|++||+.+....... ...........+.++++.+++.+..++. +..||+|||||++|||||+.+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----ccccCHHHHHHHHHHHHHhcC
Confidence 988999999999875321000 0111223345688999999998776765 357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC-ChHHHHHH
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH-ESHKLIEY 1102 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~-~~~~l~~~ 1102 (1119)
|++|||||||+|||+.++..+++.|+++.+ .|.|||++||+++ .+...||++++|.+ |++++.|+... ....+.+.
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~~~ 248 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQQFDNERFDHL 248 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHhccHHHHHH
Confidence 999999999999999999999999999975 4899999999975 46788999999975 78899888643 23345555
Q ss_pred hh
Q 001228 1103 FE 1104 (1119)
Q Consensus 1103 f~ 1104 (1119)
|.
T Consensus 249 ~~ 250 (262)
T PRK09984 249 YR 250 (262)
T ss_pred Hh
Confidence 55
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=320.79 Aligned_cols=195 Identities=29% Similarity=0.418 Sum_probs=167.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-cccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999886 99999999876532 124579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999875432110 011245678899998888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876 477888887665 477789999999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=342.29 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=177.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc----cCCCCcc-------cceEEEe
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAYI 250 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 250 (1119)
....+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999987 999999996 3322211 2469999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 251 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
+|+..+++.+||+||+.|+....+... . +....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~------------------------~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------A------------------------ERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 0 011235678999999988
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.|+.+++ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+..++|+|++.|+. .++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 8888887 9999999999999999999999999999999999999999999999876678888887765 588899
Q ss_pred cCeEEEEcCCeEEEEcChhHHH
Q 001228 411 FDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.68 Aligned_cols=213 Identities=18% Similarity=0.278 Sum_probs=158.9
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.|..+..+||+|.++ +.+.++++++|-|.--..++||||||.||||||++|.|..++ ..|+..-+
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-
Confidence 455667777776543 345689999999999999999999999999999999997763 46665422
Q ss_pred ccCChhhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 931 YPKNQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 931 ~~~~~~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
.+-+||+.-|... +...-|.-|.|.-.. +.+. +.+...|-.+||...++..- +..||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecC
Confidence 1235888877543 334457777664221 1222 22456788899987776652 56799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||+-||++|-.-+..|+||||||||++||.++...+-++|+++ ...||+++||-.+ +.+.-+.++++.+.|.-..
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999987 4689999999653 5566678888888776666
Q ss_pred ecCCCCChHHHHHHh
Q 001228 1089 AGPLGHESHKLIEYF 1103 (1119)
Q Consensus 1089 ~g~~~~~~~~l~~~f 1103 (1119)
+|....-..++.+..
T Consensus 783 dGdFeDYkkEVLdaL 797 (807)
T KOG0066|consen 783 DGDFEDYKKEVLDAL 797 (807)
T ss_pred cccHHHHHHHHHHHH
Confidence 777654444444433
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=321.32 Aligned_cols=192 Identities=28% Similarity=0.343 Sum_probs=162.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCC-CCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999886 9999999988754333467999999974 3446799
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+ . ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~----------------------~----------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELD----------------------A----------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcC----------------------c----------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 999987532110 0 001245688999999888888876
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 3778888877664 67789999999999987
Q ss_pred E
Q 001228 423 V 423 (1119)
Q Consensus 423 v 423 (1119)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=323.95 Aligned_cols=204 Identities=34% Similarity=0.514 Sum_probs=170.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC---CCCCcceEEEECCccCCCCcccceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++|+|+|+++++|++++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 65 99999999887543445679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHH-HHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|+.......... .+. .....+. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~~------------------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSS------------------DAI-------------RKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhcccccc------------------hHH-------------HHHHHHHHHHHhhcchhhhcccccC-
Confidence 99999999865432110000 000 0011233 78888988777777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.|++++.|++..++.++||++++|+
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998754 78999998888668999999999999
Q ss_pred CCeEEEEc
Q 001228 419 EGQIVYQG 426 (1119)
Q Consensus 419 ~G~iv~~G 426 (1119)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=323.82 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=172.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++.. .....+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 46778877654310 001259999999999999999999999999999999999865 4589999999875
Q ss_pred Chh---h---h-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 934 NQE---T---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 934 ~~~---~---~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
... . . ++.++|++|++.+++.+|+.||+.+....+. .......+.+.++++.+++.+..++. +..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHL-----PAQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCC-----hhh
Confidence 321 1 1 2579999999988899999999987653321 22334456688999999998776665 347
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|.+ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999975 34 56999999975 77
Q ss_pred EEE
Q 001228 1086 VIY 1088 (1119)
Q Consensus 1086 v~~ 1088 (1119)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=320.20 Aligned_cols=191 Identities=24% Similarity=0.355 Sum_probs=161.9
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---h----hhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---Q----ETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~----~~~~~~~gy~~q~~~ 950 (1119)
+++.+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 34569999999999999999999999999999999999876 45899999998742 1 124567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+++..|++||+.+..... ........+.++++++.+++.+..++. +.+||+|||||++|||||+.+|++|||
T Consensus 87 ~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 888999999998865432 122334455688999999998777766 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||||+|||+.+++.+.+.|+++.++|.|||++||+++ ....||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999998777999999999974 45678998764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=325.10 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc-----CCCCCcceEEEECCccCCCCc-----ccceEEEeccC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 253 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999998 775 999999998875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
+.++ .+||+||+.++.+..+... .+ +....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL--------------------KE-------------ELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc--------------------HH-------------HHHHHHHHHHHHcCCChHHhc
Confidence 8888 7999999988644321000 00 001234668889999877666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+. .+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++.|++ .++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 540 1349999999999999999999999999999999999999999999998763 6777777665 478889999
Q ss_pred EEEEcCCeEEEEcChhH
Q 001228 414 IILLSEGQIVYQGPRDN 430 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~ 430 (1119)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=334.33 Aligned_cols=200 Identities=25% Similarity=0.369 Sum_probs=166.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCC--CC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQND--IH 951 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~--~~ 951 (1119)
.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .+
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 59999999999999999999999999999999999865 458999999987532 23456799999997 34
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++ .|++||+.+..... ....+...+.++++++.++|. ...++. +..||+|||||++|||||+.+|++|||
T Consensus 99 ~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllL 169 (280)
T PRK13649 99 FE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILVL 169 (280)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 44 69999998764322 122333445678899999996 345554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 170 DEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999877999999999975 46678999999975 7888888753
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.56 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=175.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 56677765442 346999999999999999999999999999999999976432 25899999998
Q ss_pred cCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++. ....++.++|++|++.+++.+||+||+.+....+. .......++.++++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP---- 145 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 753 12345679999999999999999999987654321 1123344556788999998842 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK- 1081 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~- 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|+
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 457999999999999999999999999999999999999999999999864 799999999975 5667899999997
Q ss_pred ----cCcEEEEecCCC
Q 001228 1082 ----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ----~gG~v~~~g~~~ 1093 (1119)
+.|++++.|+..
T Consensus 223 ~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 223 EATGKPGRLVEIDDTE 238 (258)
T ss_pred ccCCCCceEEecCCHH
Confidence 258999998753
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.10 Aligned_cols=201 Identities=19% Similarity=0.289 Sum_probs=168.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 9999999998765432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|.....+.. .. +....++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PA------------------------EINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999998864322100 00 001234668899999888888776
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||++++.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888764 4544 689999
Q ss_pred EcCCeEEEEcCh
Q 001228 417 LSEGQIVYQGPR 428 (1119)
Q Consensus 417 L~~G~iv~~G~~ 428 (1119)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=333.90 Aligned_cols=215 Identities=26% Similarity=0.316 Sum_probs=177.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++. ..+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECC
Confidence 567777654421 12359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.+||++|++. .++..||.||+.+..... ....++..+.+.++++.++|.+..++.+ ..||+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 234567999999974 566789999998865332 1233444566899999999988777763 479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+ ..||++++|.+ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 899999999975 34 46999999975 789998
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 222 g~~~ 225 (279)
T PRK13635 222 GTPE 225 (279)
T ss_pred CCHH
Confidence 8753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=329.31 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=173.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 467888776442 235999999999999999999999999999999999976531 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .||+||+.+....... .......+.+.++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988774 8999999886533211 12233445678888988873 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||||||||++|||+|+.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ .+.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999996 4799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 224 ~-G~i~~~g~~~ 234 (254)
T PRK14273 224 N-GCIEEESSTD 234 (254)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999888753
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=332.83 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d-- 254 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+|||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 99999999987542 1245799999986
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++ .||.||+.|+....+.. .. +....++++++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD------------------------EVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 4555 59999998864321100 00 0112356788999997 67777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++....+.|++++.|+. .++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dr 215 (286)
T PRK13646 142 SPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADE 215 (286)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999999765577888887765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=331.34 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=169.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCC-CCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 359999999999999999999999999999999999865 458999999987631 134567999999973 334
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..||.||+.+..... .....+..+.+.++++.++|.++.++.+ ..||+|||||++|||||+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998754321 1223344456889999999988777763 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|++ |++++.|+..
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999877999999999975 46678999999975 7899888754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=347.32 Aligned_cols=216 Identities=27% Similarity=0.445 Sum_probs=180.7
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.+..+..+|++|.++ +++++++|+||++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 345566668877654 22379999999999999999999999999999999999877 3589999999
Q ss_pred ccC---ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC-----C
Q 001228 931 YPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL-----P 1002 (1119)
Q Consensus 931 ~~~---~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 1002 (1119)
.+. +...+++.++|++|+|.+++. |++||+.++.. +. .++.+.++++..++.++.+...|. +
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 456788999999999998765 99999987521 11 234578889999888776652222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..+|||||+|||++||||+.+++++++||||++||+++.++|++.|.++++ ++|||++||++ .....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEecC
Confidence 4568999999999999999999999999999999999999999999999986 59999999996 46778999999975
Q ss_pred CcEEEEecCCCC
Q 001228 1083 GGRVIYAGPLGH 1094 (1119)
Q Consensus 1083 gG~v~~~g~~~~ 1094 (1119)
|++++.|...+
T Consensus 530 -G~l~~~g~~~~ 540 (559)
T COG4988 530 -GRLVEQGTHEE 540 (559)
T ss_pred -CceeccCCHHH
Confidence 89999997643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=330.22 Aligned_cols=206 Identities=31% Similarity=0.411 Sum_probs=170.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+..+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++..++..
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 3569999999999999999999999999999999999865 457999999987532 23445699999998777889
Q ss_pred CHHHHHHHHHH-hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 956 TVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 956 tv~e~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
||.||+.+... .+...........+.+.++++.+++.+..++. +..||+|||||++|||||+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999987531 11000011122345678999999998777766 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.+...+++.|+++.++|.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 999999999999999999877899999999986 56688999999975 7888888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.86 Aligned_cols=202 Identities=30% Similarity=0.423 Sum_probs=167.8
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEc-cCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCE-QNDIHSP 953 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~-q~~~~~~ 953 (1119)
++.+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 345679999999999999999999999999999999999865 458999999976422 23456799997 5566778
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
.+|++|++.+...++. ....+..+.+.++++.+++.+..++.+ ..||+|||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987654331 222334456788999999987777653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999998764 899999999975 46678999999975 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.13 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=174.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC---CCeeEEEEEE
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKI 928 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~---~g~~~G~i~i 928 (1119)
|..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... ..+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34578888876542 2359999999999999999999999999999999999742 1135799999
Q ss_pred CCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----ccccc
Q 001228 929 SGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMV 999 (1119)
Q Consensus 929 ~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~ 999 (1119)
+|.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.++++.+++.+. .++.
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHES- 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 9987632 234567999999988887 5999999886543211 1122334567888999988542 2332
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeE
Q 001228 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1000 ~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++...||++++
T Consensus 147 ----~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~ 220 (253)
T PRK14242 147 ----ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAF 220 (253)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEE
Confidence 45799999999999999999999999999999999999999999999985 4799999999975 46678999999
Q ss_pred EecCcEEEEecCC
Q 001228 1080 LKRGGRVIYAGPL 1092 (1119)
Q Consensus 1080 l~~gG~v~~~g~~ 1092 (1119)
|.+ |++++.|+.
T Consensus 221 l~~-G~i~~~g~~ 232 (253)
T PRK14242 221 FYM-GKLIEVGPT 232 (253)
T ss_pred EEC-CEEEEeCCH
Confidence 975 789888874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=327.89 Aligned_cols=220 Identities=20% Similarity=0.282 Sum_probs=176.7
Q ss_pred ccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEE
Q 001228 850 FQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDI 926 (1119)
Q Consensus 850 ~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i 926 (1119)
..+..++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|
T Consensus 9 ~~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i 75 (260)
T PRK10744 9 TAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI 75 (260)
T ss_pred CCCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence 3445678888876542 2359999999999999999999999999999999999753 1 1357999
Q ss_pred EECCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----cccc
Q 001228 927 KISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDS 997 (1119)
Q Consensus 927 ~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~ 997 (1119)
.++|.++.. ..+++.++|++|++.+++ .|++||+.+...... ........+.++++++.+++.+ ..++
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 76 LLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred EECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc
Confidence 999987531 234667999999988777 899999987643221 1223334456889999999843 2333
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
. +.+||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++...+|++
T Consensus 153 ~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i 225 (260)
T PRK10744 153 S-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYT 225 (260)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEE
Confidence 3 45799999999999999999999999999999999999999999999986 4789999999975 466789999
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|++ |+++..|+..
T Consensus 226 ~~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 226 AFMYL-GELIEFGNTD 240 (260)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99975 8899888743
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=324.13 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=165.7
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 45899999998764321 12489999999999999999998
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+...... .........+.+.++++.+++.+..++. +..||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 1222334455678899999998776665 357999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1043 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.+.+.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999975 56778999999975 788888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.15 Aligned_cols=209 Identities=25% Similarity=0.408 Sum_probs=176.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999986 999999999876543 246799999999998899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.++..-... ++.. +. ......++++++.+||.+..++.+.+
T Consensus 93 tv~e~v~~~~~~~~~--~~~~--------------~~--------------~~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFDT--------------WT--------------ETDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhcc--cccC--------------CC--------------HHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 999999885321100 0000 00 00122467789999999888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||.||+||+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|+++|+ ..++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 47787777665 46888999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=331.13 Aligned_cols=219 Identities=25% Similarity=0.374 Sum_probs=174.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC------eeEEEEEECCccCCh---hhhcceEEEEccCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YIEGDIKISGYPKNQ---ETFARVSGYCEQND 949 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g------~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~ 949 (1119)
++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 356999999999999999999999999999999999976531 127999999987532 33456689999998
Q ss_pred CCCCCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh------
Q 001228 950 IHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ 1022 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~------ 1022 (1119)
..++.+|++||+.+...... .......+..+.++++++.+++.+..++. +..||+|||||++|||+|+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcccccc
Confidence 76667999999987532111 00111123345678899999998776665 4579999999999999999
Q ss_pred ---cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--Ch
Q 001228 1023 ---ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ES 1096 (1119)
Q Consensus 1023 ---~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~ 1096 (1119)
.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |++++.|+... ..
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPADVLTP 245 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHHHHcCH
Confidence 599999999999999999999999999998765 899999999975 56678999999975 78998887543 22
Q ss_pred HHHHHHhh
Q 001228 1097 HKLIEYFE 1104 (1119)
Q Consensus 1097 ~~l~~~f~ 1104 (1119)
..+.++|+
T Consensus 246 ~~~~~~~~ 253 (272)
T PRK13547 246 AHIARCYG 253 (272)
T ss_pred HHHHHHhC
Confidence 33555564
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=362.72 Aligned_cols=210 Identities=28% Similarity=0.340 Sum_probs=176.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEE
Confidence 46899999987742 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++. |++||+.++.. . .++.++++++..++.+.. |..+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 45678899999999998765 99999987421 1 134477888888886543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++ ++|+|++||++ +....+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999886 58999999997 46678999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 660 -G~iv~~G~~~ 669 (686)
T TIGR03797 660 -GRVVQQGTYD 669 (686)
T ss_pred -CEEEEECCHH
Confidence 8999999853
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=318.82 Aligned_cols=198 Identities=24% Similarity=0.303 Sum_probs=166.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+++|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 4679999999999999999999999999999999876 458999999987632 2345679999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.+...... .. .....+.+.++++.+++.+..++. +..||+|||||++|||+|+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 11 122345678899999998777766 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|. +|++++.|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999975 4667899999997 488888764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=332.72 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----------------------
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------------------- 240 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------------------- 240 (1119)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 8999999875421
Q ss_pred ----CcccceEEEeccCC-CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchh
Q 001228 241 ----FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (1119)
Q Consensus 241 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1119)
...++.+|||+|++ ..+...||+||+.|+....+.. . .+ ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~----------~~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------K----------EE--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------H----------HH--------------HH
Confidence 01245799999985 3344579999999864432210 0 00 11
Q ss_pred hHHHHHHHHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 001228 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (1119)
Q Consensus 316 ~~~~~~l~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~ 394 (1119)
..++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 677887776 999999999999999999999999999999999999999999999875 477
Q ss_pred EEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 395 t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
|+|++.|+. .++.++||+|++|++|+++++|+++++.
T Consensus 217 tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 877777664 5788999999999999999999998874
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=322.41 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc--cceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999886 9999999987754321 246999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.....+.. .. +....++.+++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RA------------------------EARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998754322100 00 0011245678899999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999987645788888887764 454 599999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=314.19 Aligned_cols=182 Identities=45% Similarity=0.746 Sum_probs=156.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEeccCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1119)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.+++....+|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45799999999999999999999999999999999999983112399999999987643 2346799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.++++.. .++.+.
T Consensus 99 tv~~~l~~~~~~~---------------------------------------------------------~~~~~~---- 117 (202)
T cd03233 99 TVRETLDFALRCK---------------------------------------------------------GNEFVR---- 117 (202)
T ss_pred cHHHHHhhhhhhc---------------------------------------------------------cccchh----
Confidence 9999997743210 123333
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
.||||||||++||+||+.+|+++||||||+|||+.++..+.+.++++++..+.|+++++||+..++.+++|++++|++|
T Consensus 118 -~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 118 -GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred -hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 3999999999999999999999999999999999999999999999876546788888888888999999999999999
Q ss_pred eEEEEc
Q 001228 421 QIVYQG 426 (1119)
Q Consensus 421 ~iv~~G 426 (1119)
++++.|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=325.97 Aligned_cols=204 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++.. ...++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 4699999999999999999999999999999999997531 2458999999987642 234567999999998887 6
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
|++||+.+....+.... ......+.++++++.+++.+ ..++. +..||+|||||++|||||+.+|+||+||
T Consensus 94 tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 167 (246)
T PRK14269 94 SIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALALSGGQQQRLCIARALAIKPKLLLLD 167 (246)
T ss_pred cHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999988654331101 12233455788999999953 22332 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+.+.|+++.+ |+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 168 EP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 226 (246)
T PRK14269 168 EPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESK 226 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999864 899999999975 46778999999975 8999888743
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=319.27 Aligned_cols=198 Identities=25% Similarity=0.375 Sum_probs=165.2
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQN 948 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~ 948 (1119)
.++++.+ ||||+|++ |+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+
T Consensus 9 ~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred ecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 3444545 99999999 9999999999999999999999865 458999999986531 1245679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.+++.+|+.||+.+..... .....++.+.++++.+++.+..++. +..||+|||||++|||+|+.+|+||
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred CccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99888999999998764321 1223345678899999998766665 3579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
+|||||+|||+.+++.+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999999765 899999999975 46678999999975 7887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=324.70 Aligned_cols=205 Identities=20% Similarity=0.336 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999886 99999999887542 12457999999999999
Q ss_pred CCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.|.... .+.. .. +....++++++.+||++..+..+.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE------------------------EAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999875321 1100 00 0012346788899998877887766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 378888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=336.00 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=174.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD-- 254 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 254 (1119)
...+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++.... .++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 356999999999999999999999999999999999999886 999999999876543 235799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.++|.+||.||+.+..+....+ +.+. +....++.+++.+||. +..++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~------------------------~~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQ------------------------EVKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHH------------------------HHHHHHHHHHHHcCCChHHhcC
Confidence 5888999999998864322100 0000 0112346788999994 46677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+.+ |||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+..+.|+++++|+ ...+.+++|+
T Consensus 158 ~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd-l~~~~~~~dr 231 (331)
T PRK15079 158 YPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD-LAVVKHISDR 231 (331)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999987667777777655 4588889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.39 Aligned_cols=201 Identities=27% Similarity=0.399 Sum_probs=171.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++..++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 469999999999999999999999999999999999876 3579999999876431 2346799999999988889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 22233445678899999998777765 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+.+++.+++.|+++.++ |+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999764 899999999975 46778999999975 788888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=322.06 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=168.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC--cccceEEEec-cCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYIS-QHDLHHG 258 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 258 (1119)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999886 99999999875332 1245799997 5567788
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+|++.+.....+... . +....++.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------A------------------------RFKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcCChhh-
Confidence 8999999988644321100 0 0011245678899999989998877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|.
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987655778888877764 7889999999999
Q ss_pred CCeEEEEc
Q 001228 419 EGQIVYQG 426 (1119)
Q Consensus 419 ~G~iv~~G 426 (1119)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.09 Aligned_cols=203 Identities=24% Similarity=0.339 Sum_probs=168.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh------hhcceEEEEccCC--CC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQND--IH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gy~~q~~--~~ 951 (1119)
+.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++ .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 469999999999999999999999999999999999876 4589999999875421 1356799999997 35
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+..|++||+.+...... ........+.+.++++.+++. ...+.. +..||+|||||++|||||+.+|+||||
T Consensus 102 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred CCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 678999999976543211 122233445688999999995 555655 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+|||+.++..+.+.|+++.++ |+|||++||+++ .+...+|++++|.+ |++++.|+..
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 9999999999999999999999765 899999999975 46668999999975 8999998853
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=299.44 Aligned_cols=208 Identities=29% Similarity=0.448 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc---ceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 260 (1119)
+.+|++||++++||||++|+|||||||||||++|+|++.|+ +|++.+||++++.+.+. +.-|..+|+..+-...
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999997 99999999999887653 5678999998776667
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|-+.++..-.+.+.. |. +...+.+..|...++.+.+....-.
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~y~~--- 135 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRDYRT--- 135 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccchhh---
Confidence 999999997654322110 10 1122356677788888777666544
Q ss_pred CCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||.+||.|+. ++++||||||||+||...+..++++.|++++. |.. |+.++|...-...+||+|
T Consensus 136 --LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~-V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 136 --LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGA-VLAVLHDLNLAAQYADRI 211 (259)
T ss_pred --cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCc-EEEEEccchHHHHhhhee
Confidence 99999999999999963 45699999999999999999999999999985 444 445556677888999999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|++++++.
T Consensus 212 vll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 212 VLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeCCeEeecCCHHHhcC
Confidence 9999999999999988753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=325.47 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=165.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---CCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 46999999999999999999999999999999999952 211247999999987642 2345679999999887
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|+.||+.+....+.. .......+.++++++.+++.+. .++. +..||+|||||++|||+|+.+|+|
T Consensus 96 ~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES-----AFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 76 5999999876443211 1122334567889999998642 2332 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 168 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~ 230 (250)
T PRK14245 168 LLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTK 230 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999999985 5899999999975 56678999999975 7899998753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=295.73 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=176.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.+|+|||++|.+||.+.++||||||||||||+++|..+ +..|.|.+||.++.... ...|.|+|++.++|.+++.||
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHHH
Confidence 49999999999999999999999999999999999887 46899999999875433 235899999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.|+..++ .+.+.++.+.+.+.+.++||.+..++.+ -+||||||||+.|||||+.+|+.|+||||++.||+-
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 99999887 4567788888999999999999888874 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCC
Q 001228 1041 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLG 1093 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~ 1093 (1119)
+++.+++++-++. ++|+.+++|||+.+ +..-.++++++|.. .|+|+..-+++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999986 56999999999976 44446799999973 36788766654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=328.26 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=177.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4678887765421 11348999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ...++.++|++|++. .++..|+.+|+.+..... ....+...+.++++++.+++.+..+.. +.+||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 32 345667999999985 677789999998764322 122334445678999999998777765 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++. .+|++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 344 4999999975 89999
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 88754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=324.86 Aligned_cols=217 Identities=21% Similarity=0.291 Sum_probs=174.6
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 356777765432 3459999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++..|+.||+.+...... .......++.+.++++.+++.. ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSN--- 145 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2456779999999999999999999987543221 1122233456788899999854 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++|.
T Consensus 146 --~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14256 146 --AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY 221 (252)
T ss_pred --cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999975 689999999975 5667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 222 -~G~i~~~~~~~ 232 (252)
T PRK14256 222 -MGDLVECGETK 232 (252)
T ss_pred -CCEEEEeCCHH
Confidence 48999988753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=320.33 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=164.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999886 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+.. . . +....++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--P--------R------------------------EIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999998864332110 0 0 0011345688899999888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 377888877765 4777899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=335.94 Aligned_cols=226 Identities=23% Similarity=0.249 Sum_probs=180.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.... .. ...+...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~--~~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRG--LF-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCC--cc-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 4678887765532110 00 00112469999999999999999999999999999999999875 3589999999876
Q ss_pred Ch------hhhcceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCC
Q 001228 934 NQ------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~------~~~~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~ 1004 (1119)
.. ..+++.++|++|++ .+.|.+|+.+++.+...... .....+..+.+.++++.++|.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 13456799999998 57888999999876543321 2234445567899999999963 45555 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|+|||+||||++||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 999999999975 45567999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999743
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=359.79 Aligned_cols=220 Identities=23% Similarity=0.313 Sum_probs=181.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|...+++.+|+|.++|.++.
T Consensus 6 l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 5677776543 334699999999999999999999999999999999998654335899999998764
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.. ..++.+||++|++.+++.+||+||+.+....+...........+.++++++.+++.+..++.+ .+||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 21 124569999999988899999999988653321111122334456889999999987777763 579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ .+...||++++|.+ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999877999999999975 46678999999975 7899988
Q ss_pred CCCC
Q 001228 1091 PLGH 1094 (1119)
Q Consensus 1091 ~~~~ 1094 (1119)
+..+
T Consensus 226 ~~~~ 229 (506)
T PRK13549 226 PAAG 229 (506)
T ss_pred cccc
Confidence 8654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=331.97 Aligned_cols=207 Identities=29% Similarity=0.365 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--C---cccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 257 (1119)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999886 9999999998742 1 12357999999973 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
...||+||+.|.....+.. .. + ....++++++.+||.+..++.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------ED----------E--------------VRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCChhhhhCCccc
Confidence 4579999998754321110 00 0 012356788999999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.++||++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875578888877665 4677899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=325.12 Aligned_cols=206 Identities=22% Similarity=0.307 Sum_probs=171.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----------cccceEEEecc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q 252 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35999999999999999999999999999999999999886 99999999887532 12357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
++.+++.+||+||+.++...... .. . . .....++.+++.+||++..|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~-~~--------~----------~--------------~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKG-EP--------K----------E--------------EATARARELLAKVGLAGKET 139 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcC-CC--------H----------H--------------HHHHHHHHHHHHcCCcchhh
Confidence 99999999999999875321100 00 0 0 01123456788999988888
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|
T Consensus 140 ~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~-~~~~~~~d 212 (250)
T PRK11264 140 SYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEM-SFARDVAD 212 (250)
T ss_pred CChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcC
Confidence 87776 9999999999999999999999999999999999999999999998753 67887776665 57889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=335.28 Aligned_cols=221 Identities=19% Similarity=0.261 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-C-eeEEEEEECCcc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YIEGDIKISGYP 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g-~~~G~i~i~g~~ 932 (1119)
++++|++..++.. .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5677776554311 1124699999999999999999999999999999999997642 2 358999999987
Q ss_pred CCh---hhh----cceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc---cccccC
Q 001228 933 KNQ---ETF----ARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL---NDSMVG 1000 (1119)
Q Consensus 933 ~~~---~~~----~~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~ 1000 (1119)
+.. ..+ ++.++|++|++ .+.|.+|+.+++........ ....++..+.+.++++.++|.+. .++.
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 642 122 23699999998 46788999998876543321 12344556678999999999753 3333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+.+||||||||++|||||+.+|+|||+||||+|||+.++..+++.|+++.+ .|.|||+||||++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 457999999999999999999999999999999999999999999999976 4999999999975 45678999999
Q ss_pred EecCcEEEEecCCC
Q 001228 1080 LKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1080 l~~gG~v~~~g~~~ 1093 (1119)
|. +|++++.|+..
T Consensus 227 m~-~G~ive~g~~~ 239 (326)
T PRK11022 227 MY-AGQVVETGKAH 239 (326)
T ss_pred EE-CCEEEEECCHH
Confidence 97 58999998743
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=313.54 Aligned_cols=196 Identities=33% Similarity=0.607 Sum_probs=161.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1119)
.++|+|++|.++.+ .+++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999987642 13457999999999999999999999999999999999986522 468999999987
Q ss_pred CCh--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 933 ~~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
+.. ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 235567999999999999999999998753210 1222 3479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777665532357788999999975 788765
Q ss_pred c
Q 001228 1090 G 1090 (1119)
Q Consensus 1090 g 1090 (1119)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=321.17 Aligned_cols=201 Identities=27% Similarity=0.354 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--CC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 256 (1119)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999886 999999999876532 245799999998 46
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 335 (1119)
++.+||+||+.+.....+.... + +. .....+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~--------------------~-~~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK--------------------K-EA-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH--------------------H-HH-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999875432211000 0 00 001124577888995 5677777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+++
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 66 99999999999999999999999999999999999999999999987654788888887764 7778999999
Q ss_pred EEcCCeEEEEc
Q 001228 416 LLSEGQIVYQG 426 (1119)
Q Consensus 416 lL~~G~iv~~G 426 (1119)
+|++|+++.+|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=334.35 Aligned_cols=216 Identities=21% Similarity=0.367 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------------------ccc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 244 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999987 99999999876432 124
Q ss_pred ceEEEeccCC--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH
Q 001228 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (1119)
Q Consensus 245 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (1119)
+.++||+|++ .+++ .||+||+.|+....+.. . . +....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~----------~--------------~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------K----------S--------------EAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------H----------H--------------HHHHHHHHHH
Confidence 6799999986 4565 59999998864321100 0 0 0012346688
Q ss_pred HHcCCc-ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
+.+||+ +..++.+.+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|++.|
T Consensus 161 ~~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999997 456666655 999999999999999999999999999999999999999999999875 4788888777
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEEcChhHHHH---HHHhcCCCCCC
Q 001228 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1119)
Q Consensus 402 q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (1119)
++ .++.++||+|++|++|++++.|+++++.. .++..|+.+|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 65 46788999999999999999999988742 34455665554
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=340.99 Aligned_cols=194 Identities=26% Similarity=0.406 Sum_probs=167.3
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCCCCCCCCH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 458999999987532 1345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+.... ...+..+.++++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998864321 1223345688999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|.+ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999975 56778999999975 789888874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=322.55 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=171.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+.+|+|+||++.+||+++|+|+||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++..|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999865 4589999999876432 2346799999999988899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||++|||+|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654321 122333456789999999987777653 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|. +|++++.|+..
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999998765 899999999975 4677899999997 47898888754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=323.42 Aligned_cols=208 Identities=21% Similarity=0.273 Sum_probs=171.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999865 4579999999875431 124579999999999999999999976
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
..... ... .+..++.+.++++.+++.+..++.+ ..||+|||||++||||++.+|++|||||||+|||+.+++
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 53211 111 1233556889999999988777764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
.+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+... ....+.+.|.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~~~~~~~ 228 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPTDELLSGKASASALL 228 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHHHHHhChhHHHHhh
Confidence 999999998754 899999999975 46678999999975 79999887542 2234555554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.94 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=178.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998765322 357999999973 6667
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||.||+.|..+..+.. ..+ ....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP--------------------REE--------------MVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC--------------------HHH--------------HHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998864322110 000 012356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++...+.|++++.|++. ++. .||+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755788888888765 454 5999999999
Q ss_pred CeEEEEcChhHHHH---HHHhcCCCCC
Q 001228 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455444
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=319.78 Aligned_cols=194 Identities=28% Similarity=0.384 Sum_probs=164.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 45999999999999999999999999999999999999886 999999999876432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+.. ++ .....++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK---------------------ER-------------EIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC---------------------HH-------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999998864322100 00 0012346788899998877888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++.|++ .++.++||++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999999865 477888887765 4788899999999
Q ss_pred cCCe
Q 001228 418 SEGQ 421 (1119)
Q Consensus 418 ~~G~ 421 (1119)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.75 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=174.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++... .....+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 467888776553100 001249999999999999999999999999999999999876 4589999999865
Q ss_pred C--------hhhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCC
Q 001228 934 N--------QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPG 1003 (1119)
Q Consensus 934 ~--------~~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~ 1003 (1119)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.+.++++.++|. ++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 23469999998764321 122333445678899999994 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999998754 899999999975 56778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 789888874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=288.28 Aligned_cols=200 Identities=29% Similarity=0.425 Sum_probs=171.8
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---h-hcceEEEEccC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---T-FARVSGYCEQN 948 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~-~~~~~gy~~q~ 948 (1119)
......+|++|++.|++||-+||||||||||||||-+|+|+.. +.+|+|.+.|++... + . ..+.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 4456789999999999999999999999999999999999877 458999999988643 1 1 23579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
..+.|++|..||+.....++..... .....+.+.|+.+||.+..+.++ .+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEE
Confidence 9999999999999999888753222 23344678999999987776663 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|.||||.+||.++...|.+++-.+. +.|.|.|++||||. +...|+|.+-|.. |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999999885 45999999999974 6788999999975 78764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=324.54 Aligned_cols=209 Identities=25% Similarity=0.343 Sum_probs=171.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.+ ++..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5667766543 23459999999999999999999999999999999999865 45899999998753
Q ss_pred h---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHH
Q 001228 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~G 1010 (1119)
. ...++.++|++|++.+++ .|++||+.+....+ .. ....+.++++.+++. ++.++. +..||+|
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---GE----KNVDVEYYLSIVGLNKEYATRD-----VKNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---Cc----HHHHHHHHHHHcCCCHHHhhCC-----cccCCHH
Confidence 2 234567999999988776 69999987653321 11 123577889999996 455554 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++ |+|||++||+++ ++.+.||++++|.+ |+++..
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEY 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 999999999975 46678999999975 788888
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 214 ~~~~ 217 (241)
T PRK14250 214 AKTY 217 (241)
T ss_pred CCHH
Confidence 7753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=333.66 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=178.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-eeEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1119)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 46778876554311 12346999999999999999999999999999999999986531 237999999987
Q ss_pred CCh---hh---hc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCC
Q 001228 933 KNQ---ET---FA-RVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003 (1119)
Q Consensus 933 ~~~---~~---~~-~~~gy~~q~~--~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 1003 (1119)
+.. .. ++ +.++|++|++ .+.|.+|+.+++.+...... .....+..+.+.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 642 22 22 4699999998 57889999999877644332 2234445567889999999975322211 12
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+.+|+|||+||||++||+.++..|+++|+++.++ |.|||+||||++ .+...+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999765 899999999975 4556799999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999853
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=329.21 Aligned_cols=216 Identities=25% Similarity=0.348 Sum_probs=177.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++. +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 4677887764420 12459999999999999999999999999999999999866 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++. .++..|++||+.+..... ....++....+.++++.+++.+..++. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCH
Confidence 42 245677999999974 567789999998764322 122333445678999999998777776 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ ++|||++||+++ ++ ..||++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 599999999975 34 57999999975 78888
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 88753
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=339.88 Aligned_cols=195 Identities=25% Similarity=0.409 Sum_probs=171.0
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999887 99999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.. ....++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 999998752100 011246688999999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..++|++++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876577888877765 58899999999999999
Q ss_pred EEEEcChhHHH
Q 001228 422 IVYQGPRDNVL 432 (1119)
Q Consensus 422 iv~~G~~~~~~ 432 (1119)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=330.70 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=177.1
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++... ....+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 57778776553100 0012459999999999999999999999999999999999876 45899999998764
Q ss_pred h----hhhcceEEEEccCCCC-CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 Q----ETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~-~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. ...++.+||++|++.. +...|+.|++.|..... .....+.++.++++++.++|.+..++.+ ..||+
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 2 2346779999999742 33469999998865432 2233444567889999999988777763 57999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++ ..||++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999754 999999999976 34 45999999975 78988
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 225 ~g~~~ 229 (280)
T PRK13633 225 EGTPK 229 (280)
T ss_pred ecCHH
Confidence 88753
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=312.00 Aligned_cols=190 Identities=59% Similarity=0.963 Sum_probs=159.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ..++.+|+|+||+|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 35778877655311 012469999999999999999999999999999999999643224689999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..+++.++|++|++.+++.+|++||+.+...++ .||+||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345567999999998889999999998643110 39999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++...||++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999997533567899999997548888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=326.76 Aligned_cols=216 Identities=23% Similarity=0.291 Sum_probs=174.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 578888876542 24599999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. ........+.++++++.+++.+. .++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999888775 999999886543311 11222334567889999998542 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+...||++++|.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999975 4667889999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=327.49 Aligned_cols=205 Identities=25% Similarity=0.377 Sum_probs=172.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1119)
.+|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999987 999999998875422 2356999999963 34467
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.+.....+.. ++ .....++.+++.+||.+..++.+.+
T Consensus 95 tv~~~l~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLD---------------------EE-------------TVAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCC---------------------HH-------------HHHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998754321110 00 0112356789999999888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.++||++++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998775577888887765 4788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=328.42 Aligned_cols=224 Identities=21% Similarity=0.283 Sum_probs=176.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.+.. +.+.+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 677888765531100 000012359999999999999999999999999999999999876 45899999998764
Q ss_pred h---hhhcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCC
Q 001228 935 Q---ETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS 1008 (1119)
. ...++.++|++|++. +++.+|+.|++.++..... ........+.++++++.+++. ...+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 223456999999975 5677899999987654321 122333445688999999994 455554 35799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+|||||++||++|+.+|+||||||||+|||+.+++.+.+.|+++.++ |.|||++||+++ ++...||++++|.+ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 56667999999974 8898
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 230 ~~~~~~ 235 (267)
T PRK15112 230 ERGSTA 235 (267)
T ss_pred ecCCHH
Confidence 888743
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=322.87 Aligned_cols=206 Identities=21% Similarity=0.354 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+..+...... .. +....++.+++.+||++..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------AE------------------------QREDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccccC---------HH------------------------HHHHHHHHHHHHcCCHHHhhcchhh--
Confidence 999999987533211000 00 0112346688899998877777766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.++++++ .+.|+|++.|++ .++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999998865 478888887765 478899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=320.64 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 338 (1119)
+||+||+.++....+.. . ....+.+++.++ +.+..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~- 131 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD- 131 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh-
Confidence 99999998764321100 0 001234566665 55666777766
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 132 ----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764467888887775 47888999999999
Q ss_pred CCeEEEEcChhHH
Q 001228 419 EGQIVYQGPRDNV 431 (1119)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (1119)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=325.20 Aligned_cols=205 Identities=26% Similarity=0.330 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999886 999999999875432 2467999999974 5777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . .+....++++++.+||++..++.+++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------P------------------------KKMKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHHHhhCCccc--
Confidence 89999998754321100 0 00112356788999999888888876
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987644578888888875 45 47999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=324.35 Aligned_cols=194 Identities=22% Similarity=0.296 Sum_probs=167.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999886 9999999977542 2457999999999999899999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+... . . ....++.+++.+||++..+..+++ ||
T Consensus 101 nl~~~~~--~---~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLK--G---Q-----------------------------------WRDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhccc--c---h-----------------------------------HHHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 9987421 0 0 001235678899998888887766 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999987655788888877664 6788999999999999999
Q ss_pred EcChh
Q 001228 425 QGPRD 429 (1119)
Q Consensus 425 ~G~~~ 429 (1119)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=320.51 Aligned_cols=200 Identities=28% Similarity=0.394 Sum_probs=170.1
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++|.++... ..++.++|++|++.+++..|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 4589999999876431 234679999999999989999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.+..... ........+.+.++++.++|.+..++.+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 1223334456788999999987777663 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+++.+.+.|++++.+ |+|||++||+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 999999999975 46677999999975 7898888743
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.41 Aligned_cols=214 Identities=20% Similarity=0.246 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 254 (1119)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999998765432 14699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 334 (1119)
.++|.+||.+++.+......... .. +....+.++++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------~~------------------------~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------KA------------------------EAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------HH------------------------HHHHHHHHHHHHcCCCChHHH-
Confidence 68899999999976543221000 00 011234567888999753322
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+ +...+.|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|++++.|+. ..+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEE
Confidence 1 1334559999999999999999999999999999999999999999999999876677777776665 4778899999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|++++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988853
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=339.47 Aligned_cols=191 Identities=26% Similarity=0.384 Sum_probs=166.2
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCCCCCCCCH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 458999999977532 2345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
+||+.|+.. ....+.++++++.++|.+..++. +.+||||||||++|||||+.+|++|||||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 11234578999999998877776 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999975 57788999999975 7899888753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=319.87 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=165.7
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC--eeEEEEEECCccCChhhh-cceEEEEccCCC--CCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKNQETF-ARVSGYCEQNDI--HSPYVT 956 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g--~~~G~i~i~g~~~~~~~~-~~~~gy~~q~~~--~~~~~t 956 (1119)
+|+||||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986520 158999999988654333 357999999984 556789
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC---CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK---SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+.|++.+...... . ......+.+.++++.+++. +..++. +..||+|||||++|||||+.+|+|||||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 1 1233445688999999997 344444 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999975 56678999999975 889988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=359.41 Aligned_cols=210 Identities=28% Similarity=0.390 Sum_probs=174.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. .++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEe
Confidence 46899999987752 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++ -|++||+.++. .+.+ ++.++++++..++.+.. |..++..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 64 3567889999999999886 49999997641 1222 33467788888776543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++ .++|+|++||+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 357999999999999999999999999999999999999999999986 4899999999974 5677999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=316.92 Aligned_cols=197 Identities=32% Similarity=0.462 Sum_probs=165.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999886 999999998775432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+.....+.. ..+ ....++.+++.+||++..++.+++
T Consensus 89 v~~~l~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIP--------------------SKE--------------VKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCC--------------------HHH--------------HHHHHHHHHHHCCCHHHHhCchhh----
Confidence 999998754322110 000 011346688899999888888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 46777776654 46778999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=316.73 Aligned_cols=202 Identities=23% Similarity=0.309 Sum_probs=181.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---h---hh-cceEEEEccCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TF-ARVSGYCEQNDIHSP 953 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~-~~~~gy~~q~~~~~~ 953 (1119)
.-++|+||+|+.||++.|||-||||||||+++|.++.. +..|+|.++|.++.. . .+ ++.++.|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45899999999999999999999999999999999877 468999999988632 2 22 457999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+.||.||+.|+..++ .++..++++.+.++++.+||.++.+++ +++|||||||||.|||||+.+|+|||||||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 467788888999999999999999998 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
+|.|||--+..+++-|.++.++ ++|||++|||++ +.+..-||+.+|+ +|+|+-.|++.+
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999998654 899999999986 6778889999996 689999998654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=333.35 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=174.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECCcc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYP 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~ 932 (1119)
+.++|++..++.. .+...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5677776554321 1234699999999999999999999999999999999997642 2457999999987
Q ss_pred CCh---hhh----cceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCC---ccHHHHHHHHHHHHHHcCCCCc---ccc
Q 001228 933 KNQ---ETF----ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSD---VDTKKRKMFVDEVMELVELKSL---NDS 997 (1119)
Q Consensus 933 ~~~---~~~----~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~l~~~---~~~ 997 (1119)
+.. ... ++.++|++|++. +.|.+||.+++.+......... ....+..+.+.++++.++|.+. .++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 632 111 246999999986 5678999999976422110000 1112334568899999999753 234
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhce
Q 001228 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 998 ~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
. +.+||||||||++|||||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||+||||++ .+...+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 4579999999999999999999999999999999999999999999999864 999999999975 46678999
Q ss_pred EeEEecCcEEEEecCC
Q 001228 1077 LLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~ 1092 (1119)
+++|. +|++++.|+.
T Consensus 229 i~vm~-~G~ive~g~~ 243 (330)
T PRK15093 229 INVLY-CGQTVETAPS 243 (330)
T ss_pred EEEEE-CCEEEEECCH
Confidence 99997 5899999875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=323.50 Aligned_cols=223 Identities=21% Similarity=0.264 Sum_probs=177.0
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEE
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIK 927 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~ 927 (1119)
.+..+.++|+++.++ .+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344678888876542 24699999999999999999999999999999999997642 13589999
Q ss_pred ECCccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCC
Q 001228 928 ISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002 (1119)
Q Consensus 928 i~g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 1002 (1119)
++|.++.. ...++.++|++|++.+++ .||+||+.+...... ........+.+.++++.+++.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 234567999999988877 599999987643211 112233445678899999885321111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
.+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. ++.|||++||+++ ++.+.||++++|.+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999986 4799999999975 56788999999974
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 238 -G~i~~~g~~~ 247 (267)
T PRK14237 238 -GDLIEYDKTR 247 (267)
T ss_pred -CEEEEeCCHH
Confidence 8999988853
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.56 Aligned_cols=211 Identities=20% Similarity=0.258 Sum_probs=171.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCCcc-------cceEEEeccCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1119)
.++|+|||++|++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 248999999998765432 13699999998
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---c
Q 001228 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---C 330 (1119)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~ 330 (1119)
.+.|.+||.+++....+..... ... +....++++++.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 4789999999986643321000 000 01123567899999974 3
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 410 (1119)
.+..+++ |||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.+..+.|+|+++|+. ..+.++
T Consensus 147 l~~~p~~-----LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~ 220 (326)
T PRK11022 147 LDVYPHQ-----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEA 220 (326)
T ss_pred HhCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 4556655 9999999999999999999999999999999999999999999999876677877777665 477889
Q ss_pred cCeEEEEcCCeEEEEcChhHHHH
Q 001228 411 FDDIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 411 ~D~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+|+|++|++|+++..|+.+++.+
T Consensus 221 adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999988753
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=326.85 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=177.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.++. .....+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 3677887765431 012358999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ...++.+||++|++. .++..||.||+.+..... ........+.++++++.++|.+..++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234677999999974 567789999998764322 122333445678999999998777665 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 46999999975 78888
Q ss_pred ecCCC
Q 001228 1089 AGPLG 1093 (1119)
Q Consensus 1089 ~g~~~ 1093 (1119)
.|+..
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 88753
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=322.83 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=169.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 45999999999999999999999999999999999999886 99999999887542 34589999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+.. . .+ ....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K----------MQ--------------RLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998754321100 0 00 012356788999998878887776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc--CCe
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~--~G~ 421 (1119)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998654577888877665 47889999999998 599
Q ss_pred EEEEcChh
Q 001228 422 IVYQGPRD 429 (1119)
Q Consensus 422 iv~~G~~~ 429 (1119)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99887653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=317.02 Aligned_cols=199 Identities=27% Similarity=0.345 Sum_probs=162.8
Q ss_pred cccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 871 ~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
.+..+.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hccccc
Confidence 444556677789999999999999999999999999999999999865 458999999976421 111223
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+.+.+||+||+.+....+. .......+.+.++++.+++.+..++.+ .+||+|||||++|||+|+.+|++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567899999987654321 222334456788999999987777653 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999998777899999999975 46677999999975 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=330.48 Aligned_cols=237 Identities=25% Similarity=0.397 Sum_probs=197.6
Q ss_pred hhhcCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceeeeceEEEEeCCeEEEEEcC
Q 001228 126 TDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGP 205 (1119)
Q Consensus 126 ~~~~~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp 205 (1119)
-+++.++-|+-.+..|++++- . ...++++|+|+||.+.+|+-++|+||
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~---P-----------------------------Pg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA---P-----------------------------PGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec---C-----------------------------CCCCCcceecceeEecCCceEEEECC
Confidence 345677778888999988872 1 12346799999999999999999999
Q ss_pred CCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHh
Q 001228 206 PGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282 (1119)
Q Consensus 206 ~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 282 (1119)
||||||||.++|.|..+|. +|.|.+||.+++.+.. .+.|||.||+-.+|+. ||.|||. |+
T Consensus 371 SgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf---------- 433 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RF---------- 433 (580)
T ss_pred CCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hc----------
Confidence 9999999999999999986 9999999999877654 3789999999999975 9999993 22
Q ss_pred HHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCc
Q 001228 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362 (1119)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~ 362 (1119)
.++.|.+...+++..++. -|. ++.|++.+||.||+ .+.+||||||||+++||||+++|.
T Consensus 434 ------------~~~~d~~kIieAA~lAgv-----Hel---Il~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 434 ------------GEEADPEKVIEAARLAGV-----HEL---ILRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred ------------cccCCHHHHHHHHHHcCh-----HHH---HHhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCc
Confidence 123344445555544331 122 45799999999996 456799999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcChhHHHHHH
Q 001228 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFF 435 (1119)
Q Consensus 363 illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~~~~~~~f 435 (1119)
+++||||-|.||+.....+.+.+.+... .|.|+|+..|.| .+...+|+|++|++|++-.+|+++|++...
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999998865 578888888876 588999999999999999999999998754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=317.54 Aligned_cols=196 Identities=21% Similarity=0.347 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999886 9999999998754321 1469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.+........ .. +....+..+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh
Confidence 98999999998854321100 00 001124568889999887888777
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
. |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888764 55 45799999
Q ss_pred EcCCeEE
Q 001228 417 LSEGQIV 423 (1119)
Q Consensus 417 L~~G~iv 423 (1119)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=328.25 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=171.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1119)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999886 999999999875432 2357999999975 466
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||.||+.|.....+.. .. +....++.+++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PI------------------------EIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999998864322110 00 0012356688999999888888876
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ .+.|++++.|++. ++ ..+|++++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 4788888887765 55 5799999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=326.81 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=173.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1119)
..+.++|+++.++ ...+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3578888876542 24599999999999999999999999999999999997542 1358999999
Q ss_pred CccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++. ....++.++|++|++.+++. ||+||+.+....+. .. ...++.+.++++.+++.. ..++.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98753 23345679999999988874 99999988654331 11 123345677888887742 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++ ++...||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 577889999999
Q ss_pred ec----------CcEEEEecCCC
Q 001228 1081 KR----------GGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~----------gG~v~~~g~~~ 1093 (1119)
++ .|++++.|+.+
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred eccccccccccccceEEEeCCHH
Confidence 85 36789988753
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=356.64 Aligned_cols=211 Identities=23% Similarity=0.372 Sum_probs=174.9
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. ++.+|+|+|++|++||.+||+|+||||||||+++|+|... +.+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEE
Confidence 46899999987641 2359999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.+|||+|++.+++. |++||+.++.. .+.+ ++.++++++..++.+.. |..++..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 53 45678899999999998865 99999987521 1222 23466777777765432 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++ +|+|+|++||+++ ....+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999985 4899999999974 6688999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=323.23 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=165.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4699999999999999999999999999999999997531 1 258999999987532 1345679999999888
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++. |++||+.+....+. ........++.++++++.+++.+. .++. +.+||+|||||++|||+|+.+|+|
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~l 170 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKDS-----AFELSGGQQQRLCIARAIAVKPTM 170 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhcC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 99999987643321 111222344567889999998652 2222 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 171 LLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999985 4899999999975 56678999999975 789888774
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=328.96 Aligned_cols=218 Identities=24% Similarity=0.302 Sum_probs=177.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCe-eEEEEEECCcc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 932 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~-~~G~i~i~g~~ 932 (1119)
.++++|+++.++- ..+.+|+||||+|++||++||+|+||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 3677777765421 12359999999999999999999999999999999999865311 13899999987
Q ss_pred CCh---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
+.. ...++.+||++|++. .++..||+||+.|..... ....++..+.+.++++.++|.+..++. +..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999984 567789999998764322 223344456688999999998877766 45799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+ ..||++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 34 67999999975 7999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 988753
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=338.53 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=175.7
Q ss_pred cCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECC
Q 001228 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1119)
Q Consensus 851 ~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1119)
.+.+|+|+||++++. +++++|++|||+|++||++||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999998775 23459999999999999999999999999999999998765 479999999
Q ss_pred ccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccC
Q 001228 931 YPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVG 1000 (1119)
Q Consensus 931 ~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~ 1000 (1119)
.+++ .+.+|+.||||||+..++. -||.+|+.|+. .+.. ++++-++.+..++.+..- ..+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 9864 4567889999999988775 49999999863 2222 233556667777655332 2345
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+.| ..|||||||||+||||++++|+|+++|||||+||.++...+++.+.+. ..|+|+|+|.|+. ++...||++++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 443 469999999999999999999999999999999999999999999994 3589999999985 688999999999
Q ss_pred ecCcEEEEecCC
Q 001228 1081 KRGGRVIYAGPL 1092 (1119)
Q Consensus 1081 ~~gG~v~~~g~~ 1092 (1119)
++ |++.+.|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 86 788888874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=318.55 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 35899999999999999999999999999999999999886 999999998875432 2457999999988886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCcc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~ 339 (1119)
||+||+.+.....+ . ....++.+++.+||+ +..++.+.+
T Consensus 92 tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-- 131 (241)
T PRK14250 92 TVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRDVKN-- 131 (241)
T ss_pred hHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCCccc--
Confidence 99999976432110 0 001235678889996 456666665
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++
T Consensus 132 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 132 ---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNK 207 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998765578888877765 478889999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=318.31 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=164.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999886 999999998875432 235799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+||+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DD--------------IRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCChhhhhCCchh
Confidence 89999999988543221100 00 011245678889998877887776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++..++|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 67777777665 4788899999999
Q ss_pred cCCeEE
Q 001228 418 SEGQIV 423 (1119)
Q Consensus 418 ~~G~iv 423 (1119)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=320.71 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 45999999999999999999999999999999999999886 999999999876542 23569999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 338 (1119)
+||+||+.++..... . + .. ...++.+++.+ +|.+..++.+++
T Consensus 95 ~tv~~~l~~~~~~~~---~-~------------------~~--------------~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D------------------QF--------------QERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h-h------------------HH--------------HHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999987532110 0 0 00 00123455556 466556666655
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999875 378888877665 57889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988774
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=337.14 Aligned_cols=199 Identities=26% Similarity=0.438 Sum_probs=171.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999886 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.+.... . + ....++++++.+||++..++.+.+
T Consensus 92 v~enl~~~~~~~~~------------~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------S----------E--------------RRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccCh------------h----------H--------------HHHHHHHHHHHcCChhHhcCChhh----
Confidence 99999886431100 0 0 011346788999999888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876578888887765 47889999999999999
Q ss_pred EEEEcChhHHH
Q 001228 422 IVYQGPRDNVL 432 (1119)
Q Consensus 422 iv~~G~~~~~~ 432 (1119)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988774
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=320.55 Aligned_cols=204 Identities=25% Similarity=0.330 Sum_probs=169.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------C---cccceEEEeccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d 254 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999886 9999999987631 1 1235699999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
.+++.+||.||+.+.. ...+.. . .+ ....++.+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------K----------DQ--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997531 111100 0 00 01134668889999888888
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. .++|++++.|++. ++.+++|+
T Consensus 138 ~~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 138 FPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCE
Confidence 8766 999999999999999999999999999999999999999999999865 4788888777664 77789999
Q ss_pred EEEEcCCeEEEEcChhHH
Q 001228 414 IILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~ 431 (1119)
+++|.+|+++++|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=314.98 Aligned_cols=221 Identities=25% Similarity=0.343 Sum_probs=193.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
..-++|+|++++.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|.-.+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 44689999999999999999999999999999999999997 9999999998866542 3679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|+.||.||..|+.+.+|.... +.+.+..+.|+..||+...+.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc
Confidence 9999999999999998876421 112345678999999999999998
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ ||||+||||.+||||..+|+|||||||+|+|||--+.+..+.|.++.+.+++|+|+.. |...|.+++.|+|.+
T Consensus 164 e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 E-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred c-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 7 9999999999999999999999999999999999999999999888888888887765 567899999999999
Q ss_pred EcCCeEEEEcChhHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001228 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (1119)
|.+|+|+..|+++|++. .|.+.-+++|..++
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999974 35555566666554
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=324.57 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=171.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD-- 254 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d-- 254 (1119)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999886 999999998875432 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++.+||+||+.+...... .. .++ .....++.+++.+||+ ...+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~------------------~~--~~~-------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT------------------SL--DES-------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc------------------CC--CHH-------------HHHHHHHHHHHHcCCChhhhhC
Confidence 46678999999976432100 00 000 0112346688999996 66777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++ ..+.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcE
Confidence 7766 9999999999999999999999999999999999999999999998765577888877765 477789999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998774
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.86 Aligned_cols=206 Identities=20% Similarity=0.298 Sum_probs=165.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999988621 2389999999876421 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC----cccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~dt 333 (1119)
+ +||+||+.|.....+.... .+ ....++..++.+|| ++..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK-------------------KK--------------LDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHhCCchhhHHHHhC
Confidence 5 8999999886432210000 00 01124556777776 344567
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 147 ~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d~ 218 (254)
T PRK14273 147 NALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISDR 218 (254)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 6665 999999999999999999999999999999999999999999999854 57777777665 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++.+|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=318.35 Aligned_cols=202 Identities=27% Similarity=0.322 Sum_probs=168.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999886 9999999998765332 258999999999999999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.+........ .... +....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8753210000 0000 0012346688999999888888876 9999
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998765577888887765 4788999999999999999988
Q ss_pred ChhHH
Q 001228 427 PRDNV 431 (1119)
Q Consensus 427 ~~~~~ 431 (1119)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=330.73 Aligned_cols=222 Identities=21% Similarity=0.268 Sum_probs=175.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++|+|+++.++. +...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5788998866531 123599999999999999999999999999999999997531 23579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 1005 (1119)
.++.. ..+++.++|+||++.+++ .|++||+.|+..... ....+...+.+.++++.++|.+-.+...+. .+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 245678999999998875 799999998643221 111222334567888888875322222222 245
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
+||||||||++|||||+.+|+||||||||+|||+.+...+++.|+++++ ++|||++||+++ .+.+.||++++|++ |+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999875 799999999974 45666999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
+++.|+..
T Consensus 302 i~e~g~~~ 309 (329)
T PRK14257 302 IEEAGETK 309 (329)
T ss_pred EEEeCCHH
Confidence 99998864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=317.98 Aligned_cols=204 Identities=23% Similarity=0.302 Sum_probs=168.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC----CCCcceEEEECCccCCCCcc-cceEEEeccCCC--CCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 258 (1119)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 8999999988754432 257999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc---ccccccc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD---ICADTMV 335 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~dt~v 335 (1119)
.+|+.|++.+.....+.. .. .....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997753321100 00 0112356788999998 4456666
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++++..++|+|++.|++. ++..++|+++
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 65 99999999999999999999999999999999999999999999987655678888777654 7888999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=321.31 Aligned_cols=206 Identities=24% Similarity=0.349 Sum_probs=172.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------------cccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 247 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999886 99999999877432 124579
Q ss_pred EEeccCCCCCCCCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+|++|++.+++.+||.||+.++... .+. ...+ ....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~--------------------~~~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGM--------------------ARAE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCC--------------------CHHH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 000 0000 0112456788999
Q ss_pred CcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 327 L~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
|++..+..+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .+
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 98887777765 9999999999999999999999999999999999999999999998765577888887776 47
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 88999999999999999999988763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=320.26 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=169.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999999763 12389999999987542 1245799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.+..+..+... . .+ ....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------K----------KE--------------LDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999988643221000 0 00 011346678899997 66677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999876 36777777665 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=322.34 Aligned_cols=206 Identities=30% Similarity=0.451 Sum_probs=172.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 45999999999999999999999999999999999999886 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+.....+.. .. .....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS--------------------RA--------------EDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC--------------------cH--------------HHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998753211100 00 0011346688899998888888877
Q ss_pred CCCChHHHHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999998744577888887765 4788899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=321.69 Aligned_cols=203 Identities=24% Similarity=0.276 Sum_probs=166.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999975421 257999999987632 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++ .|++||+.|....... .........++++++.+++.+ ..++. +..||+|||||++|||+|+.+|+|
T Consensus 97 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS-----ALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 87 8999999876543211 112333456778999998742 23333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|.+ |++++.|+..
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 999999999999999999999999876 699999999975 56778999999975 7899888754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=328.22 Aligned_cols=206 Identities=24% Similarity=0.311 Sum_probs=172.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----ccceEEEeccCCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1119)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999986 999999999875421 2467999999974 233
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
..||.|++.|.....+.. . .+ ....++++++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------P----------EE--------------IRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------H----------HH--------------HHHHHHHHHHHCCCHhHhhCCccc-
Confidence 469999998864322110 0 00 112356789999999888988877
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999997655788888888776 4544 99999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=321.30 Aligned_cols=214 Identities=24% Similarity=0.342 Sum_probs=171.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 4 ISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 56777765432 245999999999999999999999999999999999964311 24799999998
Q ss_pred cCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCC
Q 001228 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1119)
Q Consensus 932 ~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~ 1002 (1119)
++.. ...++.++|++|++.+++ .|++||+.+....... .......+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 143 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS---- 143 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC----
Confidence 7642 234567999999988877 8999999886533211 122334456788888888742 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||+|||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ .+...+|++++|++
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 144 -ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999985 4899999999975 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 221 -G~i~~~~~~ 229 (250)
T PRK14240 221 -GEIVEFGDT 229 (250)
T ss_pred -CEEEEeCCH
Confidence 788888864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=315.53 Aligned_cols=198 Identities=27% Similarity=0.377 Sum_probs=170.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999886 999999998765322 25799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.+.....+. + ...+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------~------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------P------------------DSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------C------------------HHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999875432110 0 01235678899999888888776 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 4778888887764 788999999999999999
Q ss_pred EEcChhH
Q 001228 424 YQGPRDN 430 (1119)
Q Consensus 424 ~~G~~~~ 430 (1119)
+.|++.+
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03740 204 YQGKINK 210 (223)
T ss_pred EecChhh
Confidence 9998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=323.29 Aligned_cols=216 Identities=21% Similarity=0.304 Sum_probs=173.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 367888775442 2459999999999999999999999999999999999754 11 1479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~ 1001 (1119)
.++.. ...++.+||++|++.+++. |++||+.+....... ....+..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999999888875 999999876433211 1223334557788999988532 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 5677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 229 ~-G~i~~~g~~~ 239 (259)
T PRK14274 229 M-GELVECNDTN 239 (259)
T ss_pred C-CEEEEECCHH
Confidence 4 8999988753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=355.25 Aligned_cols=227 Identities=26% Similarity=0.354 Sum_probs=183.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5667766543 33469999999999999999999999999999999999875 35899999998753
Q ss_pred h---h-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 935 Q---E-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~---~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. . ..++.++|++|++.+++.+||+||+.++...+.. .........+.+.++++.+++.+..++.+ .+|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 1 1245699999999889999999999886432211 11122333456789999999988777764 47999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|.+ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999975 56778999999975 789988
Q ss_pred cCCCCC-hHHHHHHh
Q 001228 1090 GPLGHE-SHKLIEYF 1103 (1119)
Q Consensus 1090 g~~~~~-~~~l~~~f 1103 (1119)
|+.... .+.+.+.+
T Consensus 223 ~~~~~~~~~~~~~~~ 237 (501)
T PRK10762 223 REVADLTEDSLIEMM 237 (501)
T ss_pred cCcCcCCHHHHHHHh
Confidence 886543 23344443
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=351.55 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCeEE
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1029 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~---~p~ill 1029 (1119)
.+||.|.+.|...+. . .....++++.++|..+ .++. +..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 456666666654321 1 1124578888898653 3444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~ 1092 (1119)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999974 456799999994 57999999874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=319.69 Aligned_cols=211 Identities=26% Similarity=0.372 Sum_probs=172.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999886 9999999987754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+....... .+.... . .+ . .+....++++++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~--~~~~~~---------~-~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKS--VFASLF---------F-RL-S-------------AEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhcccc--cccccc---------c-cc-H-------------HHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 9999999885331100 000000 0 00 0 00112356788999999888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999865 57888877765 478889999999999
Q ss_pred CeEEEEcChhHH
Q 001228 420 GQIVYQGPRDNV 431 (1119)
Q Consensus 420 G~iv~~G~~~~~ 431 (1119)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.50 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=175.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1119)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999886 999999999875432 2457999999974 67778
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||++|+.|.....+.. . . .....++.+++.+||.+..++.+++
T Consensus 100 ~v~~~~~~~~~~~~~~--~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y------------------D--------------EMHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC--H------------------H--------------HHHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999998864321110 0 0 0011345688999998888887766
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987655788888888764 5554 9999999999
Q ss_pred eEEEEcChhHHHH---HHHhcCCCCC
Q 001228 421 QIVYQGPRDNVLE---FFEHMGFKCP 443 (1119)
Q Consensus 421 ~iv~~G~~~~~~~---~f~~~G~~~p 443 (1119)
++++.|+.+++.+ .+...|+++|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999988643 3344454444
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.16 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=172.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISG 930 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g 930 (1119)
..++++|+++.+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 356788877543 13589999999999999999999999999999999998653 11579999999
Q ss_pred ccCChhhh-cceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC---ccccccCCCCC
Q 001228 931 YPKNQETF-ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS---LNDSMVGLPGV 1004 (1119)
Q Consensus 931 ~~~~~~~~-~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~~~ 1004 (1119)
.++..... ++.++|++|++. +.+..|+.+++.+...... ... ..+.++++++.+++.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643322 356999999974 4456799998876433221 111 2356789999999976 33444 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999975 46678999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 217 G~i~~~~~~~ 226 (254)
T PRK10418 217 GRIVEQGDVE 226 (254)
T ss_pred CEEEEecCHH
Confidence 7899988753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=328.03 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCC-
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999987 99999999887432 12357999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
.+..+||+||+.|+....+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------ED------------------------EAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 333589999998754321100 00 0012356788999997 577888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|++++.|+ ..++.++||++
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 877 999999999999999999999999999999999999999999999865 46777776655 45788999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=324.55 Aligned_cols=205 Identities=28% Similarity=0.388 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCC-CC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL-HH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~ 257 (1119)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++... ..++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35999999999999999999999999999999999999886 99999999987421 12457999999963 33
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
..+||+||+.|.....+.. .. +....+..+++.+||++..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KE------------------------EVEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchhhcCChhh
Confidence 3579999998753211100 00 0011345688999999888888877
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++.++||++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~-~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDV-DLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998763 77888777664 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=363.66 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=179.7
Q ss_pred CCcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC
Q 001228 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (1119)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 255 (1119)
+.++..+||+|+|+++++|+.+||+|||||||||.+.+|-..++|+ +|.|.+||++++.... |+.+|.|+|+|.
T Consensus 998 PsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 998 PTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred CCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCch
Confidence 3445678999999999999999999999999999999999999997 9999999999987764 578999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+|.. |+||||.|+..- . +.++.++|+..++. .+. +.+|++.+||.|
T Consensus 1075 LF~~-TIrENI~YG~~~--v-----------------------s~~eIi~Aak~ANa-----H~F---I~sLP~GyDT~v 1120 (1228)
T KOG0055|consen 1075 LFNG-TIRENIAYGSEE--V-----------------------SEEEIIEAAKLANA-----HNF---ISSLPQGYDTRV 1120 (1228)
T ss_pred hhcc-cHHHHHhccCCC--C-----------------------CHHHHHHHHHHhhh-----HHH---HhcCcCcccCcc
Confidence 9975 999999987210 0 11222333332221 111 357999999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|+ .+..||||||||++||||++.||+||||||.||+||+.+..-+.+.|.+... |+|+|+.-|.. .+.+.+|.|+
T Consensus 1121 Ge-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqnaD~I~ 1195 (1228)
T KOG0055|consen 1121 GE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNADVIA 1195 (1228)
T ss_pred Cc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcCCEEE
Confidence 97 3344999999999999999999999999999999999999999999999764 78888888876 4889999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
|+++|+|+++|++++++.
T Consensus 1196 Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1196 VLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEECCEEEecccHHHHHh
Confidence 999999999999999975
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.82 Aligned_cols=209 Identities=25% Similarity=0.324 Sum_probs=173.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999886212399999999876432 2357999999974 5677
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|..+..+.. .. +....++.+++.+||++..++.+.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RP------------------------EMIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCccc--
Confidence 89999998754321100 00 0112356688999999888888766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++ ..||++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987655788888888765 45 57999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|++++.|+++++..
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=322.09 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=174.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999886 9999999998754321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.++....... +....+... ....+ .. .+....++..++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~--~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRR--AE-----------SEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhccc---ccccc--ch-----------hHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999998854311000 000000000 00000 00 00112356678899998888888877
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998765577888877765 478899999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=321.55 Aligned_cols=216 Identities=26% Similarity=0.315 Sum_probs=172.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 357777765442 2459999999999999999999999999999999999632 2 12479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87531 234567999999998877 8999999876433211 112233456778888888743 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999975 5677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 222 ~-G~i~~~g~~~ 232 (252)
T PRK14239 222 D-GDLIEYNDTK 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899888753
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=324.17 Aligned_cols=229 Identities=23% Similarity=0.378 Sum_probs=176.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ +++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 467777775442 12469999999999999999999999999999999999866 4589999999876
Q ss_pred ChhhhcceEEEEccCCCCC--CCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.....++.++|++|++.+. ...+++|++.+...... ..........+.+.++++.+++.+..++. +..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHH
Confidence 4322234699999997653 23478888765321000 00111122344577899999998777765 3479999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||||+.+|+||+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 567788998666 4 8999988
Q ss_pred CCCC--ChHHHHHHhh
Q 001228 1091 PLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1091 ~~~~--~~~~l~~~f~ 1104 (1119)
+... ....+.+.|.
T Consensus 224 ~~~~~~~~~~~~~~~~ 239 (272)
T PRK15056 224 PTETTFTAENLELAFS 239 (272)
T ss_pred CHHhccCHHHHHHHhc
Confidence 7654 2334555554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=314.81 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=165.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~ 953 (1119)
+.+|+|+||++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 569999999999999999999999999999999999865 458999999987532 124567999999999888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|+.||+.+...... .....+..+.+.++++.+++.+..++. +.+||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999988654321 122334455688999999998776666 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1034 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|+|||+.++..+++.|+++.+ .|+|||++||+++ ....||++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999974 5678999999975 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.18 Aligned_cols=208 Identities=20% Similarity=0.243 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1119)
+.+|+|||++|++|++++|+|+||||||||+++|+|.++++ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999886 899999999876542 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+.|.+||.+++.+..+..... .+. +....+.++++.+||. ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSL---------SAA------------------------ERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCC---------CHH------------------------HHHHHHHHHHHHCCCChHHhcCC
Confidence 889999999997654321100 000 0112356789999996 467777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++|. ...+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEE
Confidence 766 999999999999999999999999999999999999999999999987667777776655 55788899999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=322.22 Aligned_cols=217 Identities=22% Similarity=0.303 Sum_probs=174.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC-e--eEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g-~--~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..... + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 367777775442 245999999999999999999999999999999999975421 2 479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. .....+..+.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654331 1122333456778899888742 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999986 5778899999997
Q ss_pred c----CcEEEEecCCC
Q 001228 1082 R----GGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~----gG~v~~~g~~~ 1093 (1119)
. +|++++.|+..
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999998754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=322.02 Aligned_cols=215 Identities=25% Similarity=0.309 Sum_probs=172.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc--
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-- 932 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~-- 932 (1119)
++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 7 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (258)
T PRK11701 7 LSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQ 71 (258)
T ss_pred EEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccc
Confidence 67777775442 2459999999999999999999999999999999999865 458999999986
Q ss_pred ---CCh---hh----hcceEEEEccCCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-cccccc
Q 001228 933 ---KNQ---ET----FARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMV 999 (1119)
Q Consensus 933 ---~~~---~~----~~~~~gy~~q~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ 999 (1119)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... ..........+.++++.+++.+ ..++.
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 148 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL- 148 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-
Confidence 432 11 2346999999974 5677899999876432211 1112233456788999999963 44544
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEe
Q 001228 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1000 ~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.+...+++.|+++.++ |.|||++||+++ .+...+|+++
T Consensus 149 ----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~ 223 (258)
T PRK11701 149 ----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLL 223 (258)
T ss_pred ----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999975 4556799999
Q ss_pred EEecCcEEEEecCCC
Q 001228 1079 LLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~ 1093 (1119)
+|.+ |++++.|+..
T Consensus 224 ~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 224 VMKQ-GRVVESGLTD 237 (258)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9975 8999988753
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=315.21 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999986 899999999876432 24679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. +. .....++.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLP---------------------KA-------------EIKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCC---------------------HH-------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99998764322110 00 0011346788999999888888766
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++...+.|++++.|++ .++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765578888888876 467899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877663
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=322.02 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------------cccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 247 (1119)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999886 89999999876421 123579
Q ss_pred EEeccCCCCCCCCCHHHHHHHhhh-hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+|++|++.+++.+||+||+.++.. ..... . . .....+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------Q--------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------H--------------HHHHHHHHHHHHcC
Confidence 999999999999999999987432 11100 0 0 00123456888999
Q ss_pred Ccccc-cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 327 L~~~~-dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
|.+.. +..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .
T Consensus 141 l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 98753 666655 999999999999999999999999999999999999999999999875 478888877765 4
Q ss_pred hHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 406 ~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 788899999999999999999988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=323.85 Aligned_cols=216 Identities=20% Similarity=0.271 Sum_probs=172.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 467888776442 2469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.. ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87632 2345679999999988875 99999987643221 1112223455778888888742 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4677899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 238 ~-G~i~~~~~~~ 248 (268)
T PRK14248 238 N-GDLVEYDQTE 248 (268)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.02 Aligned_cols=204 Identities=21% Similarity=0.330 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 254 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999886 999999998875421 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
.+++ .||+||+.|.....+.. .. + ....++.+++.+||. ...++
T Consensus 97 ~~~~-~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~ 141 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNFGVS----------QE----------E--------------AEALAREKLALVGISESLFEK 141 (280)
T ss_pred hhcc-ccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 3454 69999998754321100 00 0 011245678889997 45677
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.+++|+
T Consensus 142 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~ 214 (280)
T PRK13649 142 NPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADF 214 (280)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCE
Confidence 7766 999999999999999999999999999999999999999999999875 377888887776 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.20 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=163.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 1001389999999887531 1245799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----cccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 333 (1119)
+ .||+||+.|.....+.... .. ....++..++.+||.+ ..+.
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-------------------AY--------------LAERVERSLRHAALWDEVKDRLHE 145 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHhhC
Confidence 7 5999999886432211000 00 0112455677788753 2344
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 146 ~~~~-----LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~ 217 (253)
T PRK14242 146 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDV 217 (253)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCE
Confidence 4544 999999999999999999999999999999999999999999999853 57887777765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|+++..|+++++.
T Consensus 218 v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 218 TAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=354.76 Aligned_cols=218 Identities=26% Similarity=0.332 Sum_probs=179.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~ 70 (510)
T PRK09700 6 ISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYN 70 (510)
T ss_pred EEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECC
Confidence 5677776543 33469999999999999999999999999999999999875 35899999998764
Q ss_pred hh----hhcceEEEEccCCCCCCCCCHHHHHHHHHHhh----cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 935 QE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~~----~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
.. ..++.++|++|++.+++.+||+||+.++.... ........+..+.+.++++.+++.+..++.+ .+
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----AN 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hh
Confidence 21 12356999999999899999999998753211 0000122334456889999999987777764 57
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i 223 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSS 223 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999878999999999975 46678999999975 789
Q ss_pred EEecCCCC
Q 001228 1087 IYAGPLGH 1094 (1119)
Q Consensus 1087 ~~~g~~~~ 1094 (1119)
++.|+..+
T Consensus 224 ~~~g~~~~ 231 (510)
T PRK09700 224 VCSGMVSD 231 (510)
T ss_pred eeecchhh
Confidence 99887654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=315.55 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=174.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999986 899999999876532 2457999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+.....+.. ..+ ....+..+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD--------------------KKE--------------IERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC--------------------HHH--------------HHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 998754321100 000 011245678889998888888876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++...+.|++++.|++ +++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765578888888776 47888999999999999999
Q ss_pred EcChhHHH
Q 001228 425 QGPRDNVL 432 (1119)
Q Consensus 425 ~G~~~~~~ 432 (1119)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=319.48 Aligned_cols=214 Identities=24% Similarity=0.358 Sum_probs=172.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 56777765432 245999999999999999999999999999999999975421 25799999998
Q ss_pred cCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc----cccccCCC
Q 001228 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLP 1002 (1119)
Q Consensus 932 ~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~ 1002 (1119)
++.. ...++.++|++|++.+++ .|++||+.+...... .......++.++++++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7532 234567999999998877 899999987643321 11122334557888999888542 3333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ .+...+|++++|.+
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999865 799999999975 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|+++..|+.
T Consensus 221 -G~i~~~g~~ 229 (250)
T PRK14262 221 -GELIEYGPT 229 (250)
T ss_pred -CEEEEecCH
Confidence 788888874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=319.43 Aligned_cols=204 Identities=24% Similarity=0.297 Sum_probs=164.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCe---eEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~---~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+||||+|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999764322 37999999987632 2345679999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++..|+.||+.+....... ...+...+.+.++++.+++.. ..+.. +..||+|||||++|||+|+.+|+|
T Consensus 97 ~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred CcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999875432211 112233445666777776542 22333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTD 232 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999864 799999999975 56678999999975 7899888753
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=307.68 Aligned_cols=190 Identities=52% Similarity=0.874 Sum_probs=159.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC--CCCeeEEEEEECCc
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 931 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~--~~g~~~G~i~i~g~ 931 (1119)
.+.++|+++.++... +...+.+|+|+||+|++||+++|+|+||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 467788776553100 001245999999999999999999999999999999999986 5 46899999998
Q ss_pred cCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 932 ~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
++.....++.++|++|++.+++.+|++||+.+...+. .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765455678999999998888999999997642110 399999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||+++|+++.++...+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999985456778999999975 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=311.38 Aligned_cols=185 Identities=28% Similarity=0.330 Sum_probs=158.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++..|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 3569999999999999999999999999999999999876 458999999987532 335567999999998888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
++||+.+.... . ..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 234578899999998776665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||+.++..+++.|+++.++|+|+|++||++. +....+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998777999999999974 677788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=363.84 Aligned_cols=205 Identities=27% Similarity=0.403 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 46999999999999999999999999999999999999997 9999999999887653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. . +.++..+++...+ .+..+ -.|++..||.+|+ .+
T Consensus 542 TI~eNi~~~~~-~-------------------------~~e~i~~al~~a~------l~~~i--~~lp~G~dt~ige-~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L-------------------------TLDEAWEAARMAG------LAEDI--RAMPMGMHTVISE-GG 586 (686)
T ss_pred cHHHHHhcCCC-C-------------------------CHHHHHHHHHHcC------cHHHH--HhccccccccccC-CC
Confidence 99999987522 0 0011111111111 11111 1356778999996 35
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++|+||||||+||+.+..++.+.|+++ ++|+|++.|++ +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999875 57988888876 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=320.58 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=174.9
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1119)
..++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3578888876542 23599999999999999999999999999999999997542 1358999999
Q ss_pred CccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++.. ..+++.++|++|++.+++. |++||+.+....... .......+.++++++.+++.+ ..++.
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987632 2346689999999988876 999999876433211 112223455788899888853 22333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999975 466789999999
Q ss_pred ecCcEEEEecCCC
Q 001228 1081 KRGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~gG~v~~~g~~~ 1093 (1119)
.+ |++++.|+..
T Consensus 241 ~~-G~i~~~g~~~ 252 (272)
T PRK14236 241 YM-GKLVEYGDTD 252 (272)
T ss_pred EC-CEEEecCCHH
Confidence 75 7899988753
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=312.97 Aligned_cols=194 Identities=29% Similarity=0.429 Sum_probs=161.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999886 999999998875432 2357999999974 4667
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.+.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E----------EE--------------IEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCcHhhhcCCccc--
Confidence 89999998754321100 0 00 011345678899998878888776
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++..+||+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998764 77888877765 478889999999998
Q ss_pred Ce
Q 001228 420 GQ 421 (1119)
Q Consensus 420 G~ 421 (1119)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=320.20 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987410 1389999999886432 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ +||+||+.|..+..+.. .. + ....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KK----------D--------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 87 89999998864322110 00 0 011245677888873 3456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 66655 999999999999999999999999999999999999999999999864 67887777765 47788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.35 Aligned_cols=208 Identities=20% Similarity=0.261 Sum_probs=168.7
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECCccCCh-----hhhcceEEEEccCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKNQ-----ETFARVSGYCEQND 949 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~ 949 (1119)
++..+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 345699999999999999999999999999999999997642 1 258999999987532 23456799999998
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 950 ~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
.++ .+|+.||+.+....+. . .....+.+.++++.+++.+....... ..+..||+|||||++|||||+.+|+|||
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 877 5999999988754331 1 12234567889999998543221111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-------cCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-------RGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-------~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.||++++|+ ++|++++.|+..
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence 999999999999999999999986 4799999999975 4677899999996 468999998854
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=313.17 Aligned_cols=201 Identities=23% Similarity=0.308 Sum_probs=169.2
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.++|+++.+ +++.+|+++||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 46777776543 23469999999999999999999999999999999999866 4579999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
.....++.++|++|++.+++.+|+.||+.+...++. . ...+.+.++++.+++.+..+.. +..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHH
Confidence 543344569999999988888999999987653321 1 1233467889999998776665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
|++|||+++.+|++|||||||+|||+.+++.+++.++++.++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999986 5778899999885
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.97 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=182.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+||||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 467778776543 34699999999999999999999999999999999997642 13589999999
Q ss_pred ccCCh----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCC
Q 001228 931 YPKNQ----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1119)
Q Consensus 931 ~~~~~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 1006 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+...... .....+....+.++++.+++....+.... ..+.+
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234667999999998887 799999987643221 12233334456788899988643211111 12457
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||+|||||++|||+|+.+|+||||||||+|||+.+++.+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56778999999975 799
Q ss_pred EEecCCCCC-----hHHHHHHhhhhcCCCc
Q 001228 1087 IYAGPLGHE-----SHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1087 ~~~g~~~~~-----~~~l~~~f~~~i~g~~ 1111 (1119)
++.|+..+. ......|++ +.+|--
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (276)
T PRK14271 241 VEEGPTEQLFSSPKHAETARYVA-GLSGDV 269 (276)
T ss_pred EEeCCHHHHHhCcCcHHHHHHHh-hcCCcc
Confidence 998875421 123455666 666543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=311.65 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=164.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999886 999999998875432 2357999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+........ .. .....++++++.+||++..++.+.+ |||||
T Consensus 93 ~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL--------------------TA--------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccCc--------------------cH--------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 753211000 00 0012346788999999888888766 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEc
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G 426 (1119)
||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998765577888876665 5788899999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=314.55 Aligned_cols=198 Identities=24% Similarity=0.349 Sum_probs=166.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999886 9999999998765322 2469999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||.||+.+.....+.. .. +....++.+++.+||.+..++.++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES--------------------SR--------------QSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC--------------------HH--------------HHHHHHHHHHHHcCCHhHhhCChh
Confidence 99999999998754321100 00 001234668899999988888887
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655788888888765 55 56999999
Q ss_pred EcCCeEEEE
Q 001228 417 LSEGQIVYQ 425 (1119)
Q Consensus 417 L~~G~iv~~ 425 (1119)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999998753
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=311.95 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=156.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+||||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 3469999999999999999999999999999999999866 458999999987532 334567999999998888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+.||+.+....+. . ...+.++++++.+++.+..++. +..||+|||||++||+||+.+|++|+|||||+|
T Consensus 91 v~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 91 ALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 9999988654321 1 1234578899999998776665 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
||+.++..+++.|+++.++|.|||++||+++ .+..+-++++.+
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999998777899999999975 344433444433
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=318.75 Aligned_cols=214 Identities=25% Similarity=0.295 Sum_probs=171.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCc
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1119)
+.++|+++.+ +++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 4 FNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred EEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 5667766543 2346999999999999999999999999999999999975421 35799999998
Q ss_pred cCC----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCC
Q 001228 932 PKN----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPG 1003 (1119)
Q Consensus 932 ~~~----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~ 1003 (1119)
++. ....++.++|++|++.+++ .|+.||+.+...... ........+.+.++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 142 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH----- 142 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC-----
Confidence 753 1234567999999998887 899999987643221 1112233455778888888753 22332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|++
T Consensus 143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~- 219 (249)
T PRK14253 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM- 219 (249)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999875 699999999975 56778999999975
Q ss_pred cEEEEecCC
Q 001228 1084 GRVIYAGPL 1092 (1119)
Q Consensus 1084 G~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 220 G~i~~~g~~ 228 (249)
T PRK14253 220 GELVEHDDT 228 (249)
T ss_pred CEEEEeCCH
Confidence 799988874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.05 Aligned_cols=205 Identities=27% Similarity=0.354 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--C---cccceEEEeccCCCC-C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDLH-H 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~-~ 257 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++.. +
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 9999999998742 1 123569999999752 4
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
...|+.||+.+.....+.. . .+ ....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------E----------AE--------------ITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCCHhHhcCCchh
Confidence 4568999998754321100 0 00 011245688899998888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|++++. .+.|+|++.|++ .++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 377877776655 5788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=312.66 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=171.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC-C--CeeEEEEEECCccC---Chhh----hcceEEEEccCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYIEGDIKISGYPK---NQET----FARVSGYCEQND 949 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~-~--g~~~G~i~i~g~~~---~~~~----~~~~~gy~~q~~ 949 (1119)
..+++||||++++||++||+|.|||||||+.++|+|+.. + ...+|+|.++|.++ +... +.+.++|++|++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 569999999999999999999999999999999999765 2 24568999999865 2222 234799999997
Q ss_pred C--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc---cccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 950 I--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL---NDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 950 ~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
. +.|.+||.+-+.-....+.... ..++..+.+.++|+.+++.+- .+.+ +.+||||||||+.||.||+.+
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y-----PhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY-----PHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC-----CcccCCcHHHHHHHHHHHhCC
Confidence 5 6788999887765544332111 344566778999999999864 3444 568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|++||.||||++||...++.|+++|+++.+ .|.|+|+||||+. -+.+.||+++||. .|+|++.|+..
T Consensus 172 P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred CCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 999999999999999999999999999986 6999999999986 4888999999997 58999999864
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=313.07 Aligned_cols=200 Identities=29% Similarity=0.426 Sum_probs=162.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCC--CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999886 999999998764 2346799999998663 3489
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+....... .+.. ... .....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------LSK--------------ADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--cccC--------------CCH--------------HHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875321100 0000 000 0012356788999998878888876
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999876 477888877765 4788899999999886
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.75 Aligned_cols=225 Identities=26% Similarity=0.389 Sum_probs=191.9
Q ss_pred ccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----hhhhcceEEEE
Q 001228 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETFARVSGYC 945 (1119)
Q Consensus 870 ~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----~~~~~~~~gy~ 945 (1119)
+++..+.++..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|.+.. .+.....|+.+
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 4444556677889999999999999999999999999999999999876 56899999998753 23445679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhc-CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
.|+..+.|++||.||+.++...+. ..-++.+...+.+.++|+.+++....+.. +.+||.||||.|.|||||..+
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~-----v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL-----VGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh-----hhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999988766544 23456677778899999999985335555 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC-CC-ChHHHHHH
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL-GH-ESHKLIEY 1102 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~-~~-~~~~l~~~ 1102 (1119)
++||+||||||.|+....+.+.++++++.++|.+||+|||+++ ++++.||++.+|.+ |+++...+. .+ +.+++++.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999996 89999999999975 889988883 43 44556555
Q ss_pred h
Q 001228 1103 F 1103 (1119)
Q Consensus 1103 f 1103 (1119)
.
T Consensus 242 M 242 (500)
T COG1129 242 M 242 (500)
T ss_pred h
Confidence 4
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=288.93 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=176.3
Q ss_pred ccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC-------------h---hh
Q 001228 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN-------------Q---ET 937 (1119)
Q Consensus 874 ~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~-------------~---~~ 937 (1119)
-+.++...+|++||++.++|+++.|+|.|||||||+|+||.=+.+ +..|.|.++|..+. . ..
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 345677789999999999999999999999999999999987665 46899999986431 1 12
Q ss_pred hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHH
Q 001228 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017 (1119)
Q Consensus 938 ~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i 1017 (1119)
++.+.|+|+|+..++..+||.||+.-.-.-- ....+.+..+.++.+|..+|+.+..+.++ ..|||||+||++|
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aI 163 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAI 163 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHH
Confidence 3446899999999999999999997542111 13456667778899999999999888774 4799999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1018 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1018 A~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+.+|+++++|||||.|||+-..++.+.+++++++|+|++++||.+.. ......+++.|.+ |.|.+.||+.
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 999999999999999999999999999999999999999999999998642 4455688888865 8999999864
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=319.78 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=175.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 467888876542 235999999999999999999999999999999999976531 1369999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 1005 (1119)
.++.. ...++.++|++|++.+++ .|+.||+.+....... ....+..+.+.++++.+++.+..+..... .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87521 234567999999988877 8999999876432210 12223345678899999885421111111 145
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG- 1083 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g- 1083 (1119)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999985 577889999999753
Q ss_pred ---cEEEEecCCC
Q 001228 1084 ---GRVIYAGPLG 1093 (1119)
Q Consensus 1084 ---G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999988753
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.82 Aligned_cols=216 Identities=24% Similarity=0.305 Sum_probs=173.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--------ccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 255 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45999999999999999999999999999999999999875223699999998764321 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
+++.+||+||+.+....... . .... ... ..+ +....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---~------~~~~--~~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---F------WRTC--FSW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---c------hhhh--ccc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999875321000 0 0000 000 000 01123567899999998888888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999999765577888887766 46889999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001228 416 LLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (1119)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=307.19 Aligned_cols=178 Identities=25% Similarity=0.322 Sum_probs=149.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCC-CCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999866 458999999987531 234567999999973 333
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
..|++||+.+..... .....+..+.++++++.+++.+..++. +..||+|||||++|||||+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998864322 122333445678999999998777766 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
|+|||+.+++.+.+.|+++.++|+|||++||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=350.96 Aligned_cols=209 Identities=25% Similarity=0.323 Sum_probs=173.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~ 952 (1119)
++++.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 8 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 8 FPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred eCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 334569999999999999999999999999999999999865 358999999987532 22356799999999888
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+||.||+.+................+.++++++.+++.+..++. +.+|||||||||+|||||+.+|+||||||
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999998753211111112233345688999999998776666 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+|||+.++..+++.|++++++|.|||++||+++ ++...||++++|.+ |+++..|+...
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999999878999999999975 56678999999975 89999887654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=318.39 Aligned_cols=203 Identities=22% Similarity=0.275 Sum_probs=164.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|.+|++++|+|+||||||||+++|+|...+. +..|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 45999999999999999999999999999999999976531 236999999987532 2346779999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
++. |++||+.+....+.. . ..+...+.++++++.+++.+ ..++. +.+||+|||||++|||||+.+|++
T Consensus 97 ~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~l 168 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLHKS-----GLALSGGQQQRLCIARVLAIEPEV 168 (251)
T ss_pred CcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 875 999999886543211 1 11223345677888888753 23333 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+|||+.++..+.++|+++. +|+|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 231 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRTG 231 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCHH
Confidence 99999999999999999999999985 5899999999975 56677899999975 7888888753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=321.74 Aligned_cols=210 Identities=22% Similarity=0.349 Sum_probs=173.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999886 9999999988754322 35699999999999899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+...-... .. . .. .+ .....++.+++.+||++..++.+.+
T Consensus 97 tv~~~~~~~~~~~~~-----~~----------~-~~-~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 97 TVQELVARGRYPHQP-----LF----------T-RW-RK-------------EDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred cHHHHHHhCcccccc-----cc----------c-CC-CH-------------HHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 999999875210000 00 0 00 00 0012346788899998878888776
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987655778888877664 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=320.65 Aligned_cols=207 Identities=22% Similarity=0.241 Sum_probs=171.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC--CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 258 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999986 9999999988753221 246999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 337 (1119)
.+||.|++.+..+...... . . +....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------P----------E--------------QREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------H----------H--------------HHHHHHHHHHHHcCCChHHHhcCchh
Confidence 8899999987543211000 0 0 0011346789999994 666777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..+||++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=319.62 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=171.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCC-CCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1119)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999986 999999998875422 2457999999974 5777
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
.||.||+.+.....+.. .. + ....++.+++.+||.+..++.+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------RE----------E--------------MIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998754321110 00 0 011356788899998888887766
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987755788888877765 454 6999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.11 Aligned_cols=210 Identities=22% Similarity=0.327 Sum_probs=173.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999886 999999998764332 235699999998888899
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.+...... . .. +. .... ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~-~~-------------~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-G-AL-------------GR-FGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-c-cc-------------cC-CCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 0 00 00 0000 012346688899998878888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998765577888877765 4788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987753
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=343.80 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=176.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEE
Confidence 46999999987642 12459999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
++ ...+++.++|+||++.+++ -|++||+.++. +.+. .++.++++++.+++.+. .|..+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 64 3456788999999999886 59999998742 1111 23446777887776543 24445543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+|||++ +....||++++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 479999999997 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=317.17 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=169.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCCc---ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 258 (1119)
.++|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 124899999998875432 2457999999998899
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccccc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~ 334 (1119)
.+||+||+.+..+...... +..+ ....++.+++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK------------------SKKE--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC------------------CHHH--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999988643211000 0000 0123456788889853 35666
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|++
T Consensus 144 ~~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i 215 (250)
T PRK14247 144 AGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYV 215 (250)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEE
Confidence 655 999999999999999999999999999999999999999999999853 67877777765 4778899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=356.02 Aligned_cols=209 Identities=27% Similarity=0.424 Sum_probs=172.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
++++|+|+|++++||+.+||+||||||||||++.|.|.++|. +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 356999999999999999999999999999999999999996 9999999999877653 578999999999998
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
-||+|||.++.. +.+.++..+++..++ .+..+. .|++..||.||+ .
T Consensus 417 ~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~------~~d~I~--~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGRP-------------------------DATDEEIEEALKLAN------AHEFIA--NLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCcccccceecC-C
Confidence 699999998632 111112222222211 122222 347789999994 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
+..||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++..|.+ .+...+|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEEC
Confidence 556999999999999999999999999999999999999999999997764 57888877776 34455999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+++++|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999876
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=323.54 Aligned_cols=214 Identities=24% Similarity=0.316 Sum_probs=171.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.++++|+++.+. +..+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 477888776542 24599999999999999999999999999999999997542 13579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. |+.||+.+....+. ... ...+.++++++.+++.. ..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2346789999999887775 99999987654321 111 23456788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+.++|+++++ ++|||++||+++ .+...+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999975 4666789976543
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
++|++++.|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 46899988874
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.30 Aligned_cols=209 Identities=21% Similarity=0.333 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCC--C---cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ ...+|+|+++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35999999999999999999999999999999999998762 1238999999998752 1 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++.+||.||+.++....+..... .+ ....++++++.+||. +..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK------------------KE--------------LDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH------------------HH--------------HHHHHHHHHHHcCCccchhhhhc
Confidence 99999999998764322100000 00 011245677788874 2345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 145 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 216 (253)
T PRK14267 145 DYPSN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSD 216 (253)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57888877765 47888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=352.87 Aligned_cols=212 Identities=27% Similarity=0.427 Sum_probs=176.3
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. +++.+|+|+||+|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEE
Confidence 46899999987742 12359999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++||+|++.+++. |++||+.++. .+.+ ++.++++++..++.+.. |..++..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 64 35678899999999998875 9999998642 1122 33467777777765533 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ....||++++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999986 4899999999974 6688999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 899999873
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=316.95 Aligned_cols=209 Identities=25% Similarity=0.366 Sum_probs=171.9
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+|+||||+|++||+++|+|+||||||||+++|+|... .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999864 27999999987632 23445689999998888889999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCeEEEe
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1031 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~-------~p~illLD 1031 (1119)
||+.+.... ........+.++++++.+++.+..++. +..||+|||||++||+||+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112223345678999999998766665 35799999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|||+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|.+ |++++.|+... ....+.++|.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 231 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRDEVLTPENLAQVFG 231 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHhCchHHHHHhC
Confidence 999999999999999999999877999999999975 47788999999975 78998887542 2223455554
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.53 Aligned_cols=216 Identities=22% Similarity=0.319 Sum_probs=172.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 467788776542 2359999999999999999999999999999999999642 1 02579999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .......+.+.++++.+++. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1345679999999988775 999999886433211 11223345677888888874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.. ++|||++||+++ .+...||++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 256 ~-G~i~~~g~~~ 266 (286)
T PRK14275 256 E-GVLVEHAPTA 266 (286)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=313.54 Aligned_cols=201 Identities=23% Similarity=0.400 Sum_probs=170.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999886 9999999998754322 357999999999999999999998
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+.... ... . .. .....++.+++.+||++..++.+.+ |||||
T Consensus 94 ~~~~~-~~~--~-----------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--L-----------------NA--------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccC--C-----------------CH--------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 000 0 00 0012356788999999888888876 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999987655778888877764 7788999999999999999999
Q ss_pred hhHHH
Q 001228 428 RDNVL 432 (1119)
Q Consensus 428 ~~~~~ 432 (1119)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=314.27 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=174.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++.+|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999886 9999999988754332 3579999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.....+.. .. + ....++.+++.++|....++.+++
T Consensus 90 ~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------KA----------K--------------IKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 99998764322100 00 0 011245678889998778887776
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++..++|++++.|++. ++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644788888888764 77899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=326.42 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=170.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCcceEEEECCccCCCCcc-------cceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1119)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++. ...+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1238999999998765432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---
Q 001228 256 --HHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--- 329 (1119)
Q Consensus 256 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--- 329 (1119)
+.|.+||.+++.+....... +..+ .+.+ +....+.++++.+||++
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~~~-------------~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QRFG-------------WRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------ccHH-------------HHHHHHHHHHHHCCCCChHH
Confidence 67889999999763221000 0000 0000 01123567899999974
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 001228 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (1119)
Q Consensus 330 ~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 409 (1119)
..+..+.+ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ...+.+
T Consensus 151 ~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd-l~~v~~ 224 (330)
T PRK15093 151 AMRSFPYE-----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD-LQMLSQ 224 (330)
T ss_pred HHhCCchh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHH
Confidence 34566655 999999999999999999999999999999999999999999999987667777777655 458889
Q ss_pred hcCeEEEEcCCeEEEEcChhHHH
Q 001228 410 LFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 410 ~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++|+|++|++|++++.|+.+++.
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999988774
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.82 Aligned_cols=230 Identities=24% Similarity=0.340 Sum_probs=176.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC---CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1119)
.+.++|+++.++ ...+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 467777765442 24599999999999999999999999999999999997531 23589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCC---------Ccc-HHHHHHHHHHHHHHcCCCC--
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------DVD-TKKRKMFVDEVMELVELKS-- 993 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~---------~~~-~~~~~~~~~~~l~~~~l~~-- 993 (1119)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .....+.++++++.+++.+
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988777 49999998764321100 011 1223456788899998743
Q ss_pred --ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHH
Q 001228 994 --LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1119)
Q Consensus 994 --~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1119)
..+.. +..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ +.|||++||+++ .+.
T Consensus 191 ~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 191 NDRLDDN-----ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred hHHhcCc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHH
Confidence 22332 457999999999999999999999999999999999999999999999976 589999999975 466
Q ss_pred HhhceEeEEecCcEEEEecCCCC-----ChHHHHHHhh
Q 001228 1072 EAFDELLLLKRGGRVIYAGPLGH-----ESHKLIEYFE 1104 (1119)
Q Consensus 1072 ~~~d~~l~l~~gG~v~~~g~~~~-----~~~~l~~~f~ 1104 (1119)
+.||+++++.++|++++.|+..+ ....+.+||.
T Consensus 264 ~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 301 (305)
T PRK14264 264 RISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301 (305)
T ss_pred HhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhc
Confidence 78999754434589999988532 1123566666
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=350.63 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=172.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh----hhcceEEEEccCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gy~~q~~~~~~~ 954 (1119)
++.+|+||||+|++||++||+||||||||||+++|+|...+++.+|+|.++|.++... ..++.+||++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3569999999999999999999999999999999999865322589999999876431 123569999999988899
Q ss_pred CCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 955 VTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+||.||+.+....+... ....+...+.++++++.+++.+.. ++. +.+|||||||||+|||||+.+|+||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999998764322111 112233445688999999997654 343 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||+|||+.+...+.+.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+...
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 99999999999999999999888999999999975 56678999999975 78888887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=319.63 Aligned_cols=209 Identities=25% Similarity=0.401 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999886 999999998765432 235699999999888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||.||+.|+..... ... .. ... .....++.+++.+||++..++.+++
T Consensus 92 tv~~~i~~~~~~~~-----~~~----------~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLW----------GR-LSA--------------EDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhh-----hhc----------cC-CCH--------------HHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999987531000 000 00 000 0012346688899998888888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 3778888877654 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987763
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=315.02 Aligned_cols=213 Identities=24% Similarity=0.294 Sum_probs=169.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 455 8999999988754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 336 (1119)
+.+||+|++.+.......... . ...+. .+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~----------~------~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG----------E------EPLDL-----------LDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc----------c------ccccH-----------HHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999875432110000 0 00000 00112356788999997 45666664
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i~ 415 (1119)
. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++... +|+++
T Consensus 143 ~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~ 216 (243)
T TIGR01978 143 E----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVH 216 (243)
T ss_pred c----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEE
Confidence 1 3999999999999999999999999999999999999999999999865 4678888877764 66677 89999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=352.43 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=175.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|++|.++. +++.+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.+||.
T Consensus 453 ~~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~ 519 (694)
T TIGR01846 453 RGAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGV 519 (694)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 346899999987641 12358999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~ 1001 (1119)
++.+ ..+++.++||+|++.+++ .|++||+.++. .+.+ ++.++++++..++.+.. |..++.
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~ 589 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGE 589 (694)
T ss_pred ehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecC
Confidence 8643 567788999999998876 59999997642 1121 23456677777665432 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....||++++|+
T Consensus 590 ~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~ 665 (694)
T TIGR01846 590 K-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE 665 (694)
T ss_pred C-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe
Confidence 3 45799999999999999999999999999999999999999999999985 5899999999974 556799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 666 ~-G~i~~~g~~~ 676 (694)
T TIGR01846 666 K-GQIAESGRHE 676 (694)
T ss_pred C-CEEEEeCCHH
Confidence 5 8999999853
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=317.99 Aligned_cols=216 Identities=25% Similarity=0.291 Sum_probs=172.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1119)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 467777775442 346999999999999999999999999999999999974321 1379999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .......++.+.++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87632 2345679999999988875 99999998754331 1122333456778888888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |+++..|+..
T Consensus 223 ~-G~i~~~g~~~ 233 (253)
T PRK14261 223 L-GKLIEFDKTT 233 (253)
T ss_pred C-CEEEEcCCHH
Confidence 5 7899888753
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=318.77 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=168.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCC--C
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDI--H 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~--~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++. +
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 469999999999999999999999999999999999865 458999999987532 124567999999973 5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
.+..|+.|++.+..... ...........+.++++.+++. ...++. +..||+|||||++|||||+.+|+||||
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67789999987643211 1122334445688999999996 455554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...||++++|. +|++++.|+..+
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 9999999999999999999998765 899999999975 4667899999997 479999988654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=316.19 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=165.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2112389999999887421 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.+......... .. + ....++.+++.+||. +..++
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------RA----------E--------------MDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCChhhHHHHhc
Confidence 7 899999987643211000 00 0 011245678888874 33455
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 153 ~~~~-----LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~ 224 (260)
T PRK10744 153 SGYS-----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDY 224 (260)
T ss_pred CCCC-----CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCE
Confidence 5555 999999999999999999999999999999999999999999999853 57877777765 477889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=317.58 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=171.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ . +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 367777776542 24599999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. .......+.+.++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234567999999988776 7999999876432211 112223355778899988842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999975 4677799999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=361.89 Aligned_cols=211 Identities=24% Similarity=0.409 Sum_probs=174.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++++. +++.+|+|+||+|+||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999985432 1245999999999999999999999999999999999987 3 48999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
+. ...+++.++||+|++.++.. |++||+.++. .+.+ ++.++++++..++.+.. |..+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 64 45678899999999998865 9999998852 1222 23467777777765432 4445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||++ +....+|++++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEeC
Confidence 3 4799999999999999999999999999999999999999999999885 589999999997 46778999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 8999999843
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=286.24 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=177.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+|+|||+.|.+|+.++++||||||||||||++||..+|. .|+|.+||.+++.-. ..-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--ccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999997 999999999887533 3458999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
+|++|+.+++|..... + ..+..+.+...||++..+..|=+ |
T Consensus 93 dNvafgL~l~Gi~k~~-------R---------------------------~~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ-------R---------------------------REIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHHH-------H---------------------------HHHHHHHHHHhCcccccccceEe-----e
Confidence 9999999988764221 1 12356788999999988888876 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--Ce
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~ 421 (1119)
||||||||.|||||..+|+.||||||+.+||+-+++++..+|-++.+..|+.+++.+ |...|..-+++++++|+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999998888787766665 556788889999999985 89
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
|+..-+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998777663333
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=315.43 Aligned_cols=207 Identities=19% Similarity=0.315 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 358999999999999999999999999999999999986 3222489999999987421 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++. ||+||+.|..+..+.... .+ ....++.+++.+||.+ ..+
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~l~ 150 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK-------------------KK--------------LQEIVEKSLKDVALWDEVKDRLH 150 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhhhhh
Confidence 875 999999875432210000 00 0112355677788753 235
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.. ++|+|++.|++. ++.+++|
T Consensus 151 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d 222 (259)
T PRK14274 151 TQALS-----LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSD 222 (259)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 578888877654 7888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+++++.
T Consensus 223 ~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 223 QTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=324.05 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=167.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
.++|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998531 12389999999988532 235679999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++ .||+||+.|+....+.. .. +. ....+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~----------~~-------------~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DR----------KI-------------LEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hH----------HH-------------HHHHHHHHHHHcCCcchhhhhhh
Confidence 85 79999999864321100 00 00 01123456777777554445554
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ ....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ +.|+|++.|++ ..+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3 3455999999999999999999999999999999999999999999998865 57877777765 477788999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.45 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=168.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 46777777543 23469999999999999999999999999999999999765 4589999999765
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ..+++.++|++|++.+++ .|++||+.+....+.. . ...+.+.++++.+++. ...++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567999999988876 4999999875433211 1 1224567899999995 355554 457999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ .|.|||++||+++ .+ ..||++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999975 34 56999999964444444
Q ss_pred ecC
Q 001228 1089 AGP 1091 (1119)
Q Consensus 1089 ~g~ 1091 (1119)
+|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=318.68 Aligned_cols=196 Identities=23% Similarity=0.395 Sum_probs=154.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 458999999999999999999999999999999999865 458999999987532 334667999999987764 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHH-----HHHHHHHHHc--CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
|.||+.+... ........ ..+++.++.+ ++....+.. +.+||+|||||++|||||+.+|++||
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976421 01111100 1122333333 333333332 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ .+ ..||++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 4899999999975 34 56999999975 789988874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=350.86 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=178.1
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 367777776442 3469999999999999999999999999999999999865 4589999999875
Q ss_pred Ch---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH
Q 001228 934 NQ---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 934 ~~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~ 1009 (1119)
.. ... ++.+||++|++.+++.+||+||+.+.... .....+.+.++++.+++.+..++.+ .+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 32 122 24699999999999999999999875311 1223456788999999987777663 57999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999975 46678999999975 789998
Q ss_pred cCCCC
Q 001228 1090 GPLGH 1094 (1119)
Q Consensus 1090 g~~~~ 1094 (1119)
|+...
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 87653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.02 Aligned_cols=209 Identities=28% Similarity=0.421 Sum_probs=172.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999886 9999999988765322 34699999998778889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.+...... . . .. .+..+ ....++.+++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~-----~----~------~~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR-----S----L------WA-GDSPH--------------DAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh-----h----h------cc-CCCHH--------------HHHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987421000 0 0 00 00000 011346688899998878888876
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 3678888877764 788999999999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
+++.+|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=312.07 Aligned_cols=195 Identities=25% Similarity=0.353 Sum_probs=162.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (1119)
+.+|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999886 99999999877421 12467999999999999
Q ss_pred CCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.+.... .+.. .. +....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCccc
Confidence 99999999875321 1100 00 0011345678889998888888876
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999876 467877776655 5788999999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=349.86 Aligned_cols=215 Identities=29% Similarity=0.355 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 5677776543 23469999999999999999999999999999999999865 45899999998753
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
. ..+++.+||++|++.+++.+||.||+.+....+........+..+.+.++++.+++.+..++. +.+||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHH
Confidence 2 224567999999998899999999998853211111112334455688999999998766665 4579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||++|||+|+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ .+...||++++|.+ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999975 56678999999975 7887766
Q ss_pred C
Q 001228 1091 P 1091 (1119)
Q Consensus 1091 ~ 1091 (1119)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 4
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=308.89 Aligned_cols=212 Identities=24% Similarity=0.322 Sum_probs=172.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-C-CCCcceEEEECCccCCCCcc-------cceEEEeccC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 253 (1119)
...+++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.... .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 34567999999997654432 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-
Q 001228 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC- 330 (1119)
Q Consensus 254 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~- 330 (1119)
+ .+.|.+||.+.+.-..+...... . ..+....+.++|+.+||++-
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~------------------------~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------S------------------------KKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------h------------------------hHHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999999865544321100 0 01112345678999999863
Q ss_pred --ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 331 --ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 331 --~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
.+.+. ..|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.++.+.++|+. +|...-+.
T Consensus 145 ~~~~~YP-----helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI-THDl~vva 218 (316)
T COG0444 145 RRLKSYP-----HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-THDLGVVA 218 (316)
T ss_pred HHHhhCC-----cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHH
Confidence 34444 45999999999999999999999999999999999999999999999998766665555 45566899
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHH
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++||+|+||+.|+||+.|+.+++.
T Consensus 219 ~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 219 EIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred HhcceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999999874
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=324.33 Aligned_cols=206 Identities=19% Similarity=0.301 Sum_probs=168.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC--------CcccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--------FVPQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~--------~~~~~~~~yv~Q~d~ 255 (1119)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35899999999999999999999999999999999999886 9999999987642 112457999999973
Q ss_pred C-CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccc
Q 001228 256 H-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1119)
Q Consensus 256 ~-~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 333 (1119)
. +...||+||+.|.....+.. .. + ....++.+++.++|+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------KQ----------E--------------AYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhHhcC
Confidence 2 22469999998854321100 00 0 011245678889995 56777
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||+
T Consensus 147 ~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~ 220 (289)
T PRK13645 147 SPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADE 220 (289)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999998765577888877765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=355.70 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=171.0
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1119)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|. +|+|.+||+++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999997 9999999999876543 5789999999999986 9
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++|||.++.. . .+.++...++.+. .++.++ .|++..||.+|+ .+.
T Consensus 431 i~~NI~~~~~---~--------------------~d~~i~~a~~~~g---------l~~~i~--~lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--------------------SEEQVWQALETVQ---------LAELAR--SLPDGLYTPLGE-QGN 475 (592)
T ss_pred HHHHHHhCCC---C--------------------CHHHHHHHHHHcC---------cHHHHH--hccccccccccC-CCC
Confidence 9999988521 0 0111111111111 111222 256778999987 345
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
.||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++.. ++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 68999998887 5677899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=355.30 Aligned_cols=209 Identities=23% Similarity=0.372 Sum_probs=171.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45999999999999999999999999999999999999997 9999999999876543 467999999999997 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++..- +.+.++..+++...+ .+..++ .|++..||.+|+. +
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMAY------AMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHhC------cHHHHH--hcccccCceeCCC-C
Confidence 999999874210 001111111111111 111222 3677889999963 4
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
+.||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++.. ++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 68999988887 567889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=315.93 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=169.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--CC-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 356777765432 2469999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ......++.+.+.++.+++.. ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87631 234567999999988887 6999999876433221 111222345667788887642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 589999999975 5667899999997
Q ss_pred cCcEEEEecCC
Q 001228 1082 RGGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~gG~v~~~g~~ 1092 (1119)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789888864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=319.84 Aligned_cols=216 Identities=19% Similarity=0.250 Sum_probs=172.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCC---eeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~ 929 (1119)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3578888876542 246999999999999999999999999999999999975311 247999999
Q ss_pred CccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccC
Q 001228 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1119)
Q Consensus 930 g~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~ 1000 (1119)
|.++.. ..+++.++|++|++.+++. |+.||+.+....+. .. ...++.+.++++.+++.. ..++.
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 2345679999999887764 99999987643321 11 122344667788887742 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+...||++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999985 577889999999
Q ss_pred e--------cCcEEEEecCCC
Q 001228 1081 K--------RGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~--------~gG~v~~~g~~~ 1093 (1119)
+ +.|++++.|+..
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred ecccccccccCceEEEeCCHH
Confidence 7 268999999864
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=307.29 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=166.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875422 3467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.+...... . ... .....++.+++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-K-------------------LNA--------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-C-------------------ccH--------------HHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9976432100 0 000 0012345688999998888888876 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998765567887777665 47788999999999999998
Q ss_pred EcC
Q 001228 425 QGP 427 (1119)
Q Consensus 425 ~G~ 427 (1119)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=317.33 Aligned_cols=208 Identities=20% Similarity=0.301 Sum_probs=166.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998741 11389999999887531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++. ||.||+.|.....+... +..+ ....++.+++.+||.+ ..+
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR------------------SKAE--------------LDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc------------------chHH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 875 99999988643221100 0000 0112456788889864 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 159 ~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d 230 (267)
T PRK14235 159 EPGTG-----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQ 230 (267)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57877777765 47789999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+.+++.
T Consensus 231 ~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=362.99 Aligned_cols=206 Identities=24% Similarity=0.324 Sum_probs=169.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.. .++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45899999999999999999999999999999999999997 999999999987654 3578999999999996 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i~e-~G 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVIT--SRPGGYDAELAE-GG 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHHH--hCcCcccceecc-CC
Confidence 99999976421 111111122221111 111222 366778999996 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
.+||||||||++||||++.+|++++||||||+||+.+...|.+.|++ .++|+|++.|++ +....||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999986 378999988886 466789999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=315.55 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=167.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCCcc-cceEEEeccCCC--CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 260 (1119)
++|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998711 138999999998754322 357999999974 45668
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc---cccccccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVGD 337 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 337 (1119)
|+.+++.+.++..+.. . ....+..+++.+||.+ ..++.+++
T Consensus 97 ~~~~~~~~~~~~~~~~---------------------~---------------~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 97 TMHTHARETCLALGKP---------------------A---------------DDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred cHHHHHHHHHHHcCCC---------------------h---------------HHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 9999986643221100 0 0012456788899976 35666665
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|
T Consensus 141 -----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l 214 (254)
T PRK10418 141 -----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVM 214 (254)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765577888877765 4677899999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=305.35 Aligned_cols=196 Identities=27% Similarity=0.437 Sum_probs=170.9
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (1119)
++++..+.-.+|||-|+||||||||+|+|+|..+|+ +|.|.+||..+.+.. .+|.+|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775799999999999999999999999998 999999998764322 2588999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+-||.|+.... .....|++...||++|..+.+...
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCCc----
Confidence 999999974321 011246789999999999999987
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+|||||++.|++|+||||.+.||-....+++-+|.+++++.+..++.. .|-..|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCe
Confidence 999999999999999999999999999999999999999999999998776555554 555679999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=319.14 Aligned_cols=216 Identities=22% Similarity=0.243 Sum_probs=171.0
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478888876542 2358999999999999999999999999999999999753 1 13589999999
Q ss_pred ccCCh-----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC----CccccccCC
Q 001228 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~~-----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~ 1001 (1119)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ........+.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87631 234567999999988877 499999987643221 111222334567777777542 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+..||+|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999975 4667899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 241 ~-G~i~~~g~~~ 251 (271)
T PRK14238 241 N-GYVNEYDDTD 251 (271)
T ss_pred C-CEEEEeCCHH
Confidence 5 7898888753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=358.18 Aligned_cols=213 Identities=28% Similarity=0.423 Sum_probs=177.1
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|++|.++. ++.+|+|+||+++|||++||+||||||||||++.|+|..+ +.+|+|.+||.
T Consensus 326 ~~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~ 391 (567)
T COG1132 326 IGSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGI 391 (567)
T ss_pred CCeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCE
Confidence 345899999987752 3469999999999999999999999999999999999876 45899999998
Q ss_pred cCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-------ccccccCC
Q 001228 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------LNDSMVGL 1001 (1119)
Q Consensus 932 ~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~ 1001 (1119)
+++ ...+++.++|++|++.++. -||+||+.++.. +... +.++++++..++.+ -.|..+|.
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge 461 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATD----EEIEEALKLANAHEFIANLPDGYDTIVGE 461 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccceecC
Confidence 864 4667889999999999988 799999998631 1222 33555555554433 24566664
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++||||++++|+||+||||||+||+++.+.|++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 462 ~-G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~ 537 (567)
T COG1132 462 R-GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD 537 (567)
T ss_pred C-CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE
Confidence 3 45799999999999999999999999999999999999999999999887 5799999999974 566799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 538 ~-G~i~e~G~h~ 548 (567)
T COG1132 538 N-GRIVERGTHE 548 (567)
T ss_pred C-CEEEEecCHH
Confidence 5 7899999864
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=316.32 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=162.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc-----CCh---hh----hcceEEEEcc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-----KNQ---ET----FARVSGYCEQ 947 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~-----~~~---~~----~~~~~gy~~q 947 (1119)
..+|+|+||+|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+ +.. .. .++.++|++|
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 458999999999999999999999999999999999876 458999999876 321 11 2346899999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001228 948 NDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024 (1119)
Q Consensus 948 ~~~--~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 1024 (1119)
++. ..+..|+.|++.+..... . ........+.+.++++.+++. ...++. +..||+|||||++|||||+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred CcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcC
Confidence 975 345678999986542211 1 011123345678899999996 355554 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1025 p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|++|||||||+|||+.+++.+++.|+++.++ |.|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999998654 899999999975 46667999999975 789988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=317.88 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=170.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEECC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1119)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 467788776542 24599999999999999999999999999999999997431 1 2579999999
Q ss_pred ccCC-----hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCC
Q 001228 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1119)
Q Consensus 931 ~~~~-----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~ 1001 (1119)
.++. ....++.++|++|++.+++ .|+.||+.+....+. .. ....+.+.++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 8752 2234567999999988777 499999987653321 11 122345667778877742 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++...||++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999999975 589999999975 5788899999997
Q ss_pred c--------CcEEEEecCC
Q 001228 1082 R--------GGRVIYAGPL 1092 (1119)
Q Consensus 1082 ~--------gG~v~~~g~~ 1092 (1119)
+ .|++++.|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 5899999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=319.74 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=171.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+.|+|+++.++. +...+|+||||+|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678888765531 12358999999999999999999999999999999999864 369999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC------CCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL------PGV 1004 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~ 1004 (1119)
.. ..+++.++|++|++.+++. |++||+..... . .++.++++++.++|.+..++.++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~----~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------W----SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------C----CHHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 42 3456789999999998875 99999953210 1 123467888999997765554321 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
..||+|||||++|||||+.+|+||+|||||++||+.+...+++.|++.. .++|||+|+|+++ ....||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 4699999999999999999999999999999999999999999999875 4899999999974 4456999999975 7
Q ss_pred EEEEecCCCC
Q 001228 1085 RVIYAGPLGH 1094 (1119)
Q Consensus 1085 ~v~~~g~~~~ 1094 (1119)
++++.|++.+
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 8999998643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=314.79 Aligned_cols=220 Identities=24% Similarity=0.304 Sum_probs=171.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+.++|+++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|.....+..|+|.++|.++.
T Consensus 8 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 8 LEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred EEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 56777765432 24599999999999999999999999999999999996211145899999998754
Q ss_pred h---hhhcc-eEEEEccCCCCCCCCCHHHHHHHHHHhhcC----CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCC
Q 001228 935 Q---ETFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLS----SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1119)
Q Consensus 935 ~---~~~~~-~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~ 1005 (1119)
. ....+ .++|++|++.+++.+|+.+++.+....... .+.......+.+.++++.+++. ...++... .
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 150 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----E 150 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----c
Confidence 3 12222 478999999999999999998765321110 0111222335678889999996 34555431 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG 1084 (1119)
.||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... +|++++|. +|
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~G 228 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-NG 228 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-CC
Confidence 49999999999999999999999999999999999999999999999877999999999975 34444 79999996 58
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 229 ~i~~~~~~~ 237 (252)
T CHL00131 229 KIIKTGDAE 237 (252)
T ss_pred EEEEecChh
Confidence 999998754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=315.17 Aligned_cols=208 Identities=22% Similarity=0.328 Sum_probs=167.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 359999999999999999999999999999999999986411 1389999999876421 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++.+||+||+.++....+... . .. ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------K----------KD--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999987643221000 0 00 011345677888874 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 57877777665 47889999
Q ss_pred eEEEEc------CCeEEEEcChhHHH
Q 001228 413 DIILLS------EGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~------~G~iv~~G~~~~~~ 432 (1119)
+|++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=312.62 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++....+|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531123899999999876432 2457999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTMVG 336 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~vg 336 (1119)
||+||+.++...++.. ...+ .....++.+++.+||.. ..+..+
T Consensus 94 tv~eni~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~- 140 (246)
T PRK14269 94 SIYENISYAPKLHGMI-------------------KNKD-------------EEEALVVDCLQKVGLFEEVKDKLKQNA- 140 (246)
T ss_pred cHHHHhhhHHhhcCcc-------------------cChH-------------HHHHHHHHHHHHcCCChhhhHHhcCCc-
Confidence 9999998864322100 0000 00112456788888853 234444
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++.|++ .++.+++|++++
T Consensus 141 ----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~ 213 (246)
T PRK14269 141 ----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAF 213 (246)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEE
Confidence 44999999999999999999999999999999999999999999999864 67877777765 478889999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 214 FHLGELIEFGESKEFF 229 (246)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=313.23 Aligned_cols=207 Identities=18% Similarity=0.320 Sum_probs=166.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 45899999999999999999999999999999999998641 12489999999987532 124569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ +||+||+.|.....+.... . + ....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------K----------E--------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 8999999886432211000 0 0 011234567788774 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.++||
T Consensus 143 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KSALK-----LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 55554 999999999999999999999999999999999999999999999865 47877777765 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=321.37 Aligned_cols=251 Identities=24% Similarity=0.408 Sum_probs=200.6
Q ss_pred HHHhhhhhcHHHHHHHHHHHhhhc------CCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCC
Q 001228 106 SILKIVEEDNEKFLKRIRHRTDRV------GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179 (1119)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~ 179 (1119)
|.++..=-|-|++++-+++..+-+ .+..++-.|.|+|++..-
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y-------------------------------- 547 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY-------------------------------- 547 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec--------------------------------
Confidence 334444457888888777665533 233455678888877652
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC---cccceEEEeccCCCC
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLH 256 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~ 256 (1119)
...+++|+||||++.||+.+||+||||+||||+|+.|....+-+ +|.|+++|+++... ..++.||.||||..+
T Consensus 548 -~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 548 -DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred -CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 23567999999999999999999999999999999999999876 99999999998654 346789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
|.+ |+..||.|+. |+...++..+++..+ .+-| +++++++.++|+||
T Consensus 624 FNd-TI~yNIryak-------------------------~~AsneevyaAAkAA-----~IHd---rIl~fPegY~t~VG 669 (790)
T KOG0056|consen 624 FND-TILYNIRYAK-------------------------PSASNEEVYAAAKAA-----QIHD---RILQFPEGYNTRVG 669 (790)
T ss_pred ecc-eeeeheeecC-------------------------CCCChHHHHHHHHHh-----hHHH---HHhcCchhhhhhhh
Confidence 976 9999998852 222222222222211 1122 46889999999999
Q ss_pred CccCCC--CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 337 DEMRRG--ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 337 ~~~~rG--LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+ || |||||||||+|||+++..|.+++|||.||+||..+..+|..+|.+++. ++|.|+.-|.-+ +.-.+|.|
T Consensus 670 E---RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~I 742 (790)
T KOG0056|consen 670 E---RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLI 742 (790)
T ss_pred h---cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEE
Confidence 8 66 799999999999999999999999999999999999999999999986 677777767654 55679999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++++|+|++.|.++|++.
T Consensus 743 Lvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEeCCeEeecCcHHHHHh
Confidence 9999999999999999875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=313.18 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 12489999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ .||+||+.++.+..+... ..+ ....+..+++.+||.+ ..+
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD-------------------KKV--------------LDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC-------------------HHH--------------HHHHHHHHHHHcCCCchhhhhhc
Confidence 87 599999988643211000 000 0112456778888853 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.++||
T Consensus 159 ~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d 230 (267)
T PRK14237 159 KSAL-----TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASD 230 (267)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 578777777654 7889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 231 ~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 231 YTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=332.37 Aligned_cols=203 Identities=21% Similarity=0.287 Sum_probs=164.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+.+|+||||+|++|+++||+|+||||||||+++|+|... +.+|+|.++|.+. ++.+.+.+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4589999998641 1222344566789999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++.+...... ....+..+.+.++++.+++.+..++. +..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987543321 22333445677899999998777766 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
.++..+++.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+..+......+|++
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHHHHhhHHHHHH
Confidence 9999999999999877999999999975 56678999999975 889998876433333444444
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=351.06 Aligned_cols=211 Identities=27% Similarity=0.391 Sum_probs=173.0
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++.. +++.+|+|+||+|+|||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEE
Confidence 468999999887521 12469999999999999999999999999999999999876 458999999988
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
++ ...+++.++|++|++.++. -|++||+.++. .+.+ ++.++++++..++.+.. |..+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 64 3557788999999998876 59999998752 1121 34467888888876543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++ .. ..+++|+|+|||++ +....+|++++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl--~~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRL--STVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccH--HHHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999998 22 23589999999996 46778999999975
Q ss_pred CcEEEEecCC
Q 001228 1083 GGRVIYAGPL 1092 (1119)
Q Consensus 1083 gG~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 899999984
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=308.09 Aligned_cols=186 Identities=29% Similarity=0.365 Sum_probs=156.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+......++.++|++|++.+++..|+.
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 3469999999999999999999999999999999999865 45899999998753222566799999998888899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+....+. .. .+.+.++++.+++.+..+.. +..||+|||||++|||||+.+|++|||||||+|||
T Consensus 92 ~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 92 ENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred HHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987543321 11 23478899999997766555 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+.+...+++.|++++++|+|||++||+++ .... |+++.+.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~--~~~~-~~~~~~~ 199 (207)
T PRK13539 160 AAAVALFAELIRAHLAQGGIVIAATHIPL--GLPG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCch--hhcc-CcEEeec
Confidence 99999999999998777999999999964 3444 8887774
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=316.12 Aligned_cols=205 Identities=19% Similarity=0.281 Sum_probs=162.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 358999999999999999999999999999999999986310 1389999999876421 123569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++ .||+||+.|.+...+.. + +. ...++.+++.+++. +..+
T Consensus 106 ~~-~tv~enl~~~~~~~~~~---~------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYT---G------------------DM--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCc---H------------------HH--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 88 49999998865432110 0 00 01123456666653 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ESGYS-----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 55554 999999999999999999999999999999999999999999999854 57777777665 58889999
Q ss_pred eEEEEcC-----------CeEEEEcChhHHH
Q 001228 413 DIILLSE-----------GQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~-----------G~iv~~G~~~~~~ 432 (1119)
++++|++ |++++.|+++++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6789999998874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=312.60 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=167.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 459999999999999999999999999999999999985 3212389999999887432 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++.+||+||+.+..+..+.... .+ ....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR-------------------SE--------------ADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 9999999999875432110000 00 0112456778888753 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 215 (252)
T PRK14256 144 SNAME-----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSD 215 (252)
T ss_pred CCcCc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCC
Confidence 55554 999999999999999999999999999999999999999999999975 46777777765 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=307.26 Aligned_cols=192 Identities=29% Similarity=0.422 Sum_probs=161.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCCCCCCC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1119)
|+|+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999886 99999999876421 12457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.+...... .. .....++.+++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~~------------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRKR------------NR------------------------EDRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhCC------------HH------------------------HHHHHHHHHHHHcCCHhHhhcCccc----
Confidence 9999987532100 00 0011245678899998877877766
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999765577877777665 47788999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=317.03 Aligned_cols=195 Identities=26% Similarity=0.348 Sum_probs=156.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ....++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 58999999999999999999999999999999999876 45899999997653 2334567999999988776 699
Q ss_pred HHHHHHHHHhhcCCCccHHHH-----HHHHHHHHHHc--CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 958 YESLLYSAWLRLSSDVDTKKR-----KMFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+||+.+.... ...... ...+++.++.+ ++....+.. +..||+|||||++|||||+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999775321 111111 11234455554 454444433 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+.+.|+++. +|.|||++||+++ ++ ..||++++|.+ |++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999975 34 45999999975 788887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.85 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc-----CCCCcc-------cceEEEec
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~ 251 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999886 9999999987 544321 34699999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc
Q 001228 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (1119)
Q Consensus 252 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 329 (1119)
|++. +++.+|+.||+.+.....+.. +.++ ....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-------------------HYGD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-------------------cHHH--------------HHHHHHHHHHHcCCCh
Confidence 9973 577789999997632211000 0000 0113466888999974
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHH
Q 001228 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~ 408 (1119)
..++.+++ |||||||||+||+||+.+|++|||||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 56777766 9999999999999999999999999999999999999999999998765577877777665 4777
Q ss_pred hhcCeEEEEcCCeEEEEcChhHHH
Q 001228 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 409 ~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988763
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=358.92 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 568999999999987 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++..- .+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~-------------------------~~~e~i~~al~~a~------l~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTD-------------------------TPDEEIMAAAKAAN------AHDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC------CHHHHH--hCCCccCCcccC-CC
Confidence 999999875210 00111111111111 011222 356778999996 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|+|++||||||+||+.+...+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6699999999999999999999999999999999999988888 222 2478999988886 467889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++.+|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999865
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=313.65 Aligned_cols=206 Identities=24% Similarity=0.318 Sum_probs=165.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--Ce--eEEEEEECCccCC---hhhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GY--IEGDIKISGYPKN---QETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g~--~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~ 950 (1119)
+++.+|+||||+|.+||+++|+|+||||||||+++|+|...+ |. +.|++.++|.+.. ...+++.++|++|++.
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 345699999999999999999999999999999999997542 21 2356666666542 2345677999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 1026 (1119)
+++.+|++||+.+...... .....+..+.+.++++.+++.+ ..+.. +..||+|||||++|||||+.+|+
T Consensus 101 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999988643211 1112333456788999999864 22332 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1027 illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...||++++|.+ |+++..|+..
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~ 237 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSN 237 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999999864 699999999975 46678999999975 7998888754
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=298.11 Aligned_cols=157 Identities=30% Similarity=0.451 Sum_probs=141.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCCH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
..+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 359999999999999999999999999999999999865 358999999987542 2345679999999988888899
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.||+. ||+|||||++|||||+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 98873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
|+.++..+.+.|+++.++|.|||++||+++ .+...+|++++|++|
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999877899999999975 466689999999763
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=358.92 Aligned_cols=208 Identities=25% Similarity=0.447 Sum_probs=172.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 35899999999999999999999999999999999999997 9999999999877653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|++|||.++.. +.+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~T~i~e-~G 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFVR--RHPDGLDMQIGE-RG 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcccccceecC-CC
Confidence 99999987421 111112222222111 111222 467788999996 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++++||||||+||+.+...|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999998764 68999988887 467899999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=299.11 Aligned_cols=171 Identities=40% Similarity=0.716 Sum_probs=152.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 776 9999999998764334567999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~----------------------------------------------~---------------------- 110 (194)
T cd03213 99 VRETLMFAAKL----------------------------------------------R---------------------- 110 (194)
T ss_pred HHHHHHHHHHh----------------------------------------------c----------------------
Confidence 99999763110 0
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. ++|+|++.|++..++.+++|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 29999999999999999999999999999999999999999999998653 78999999988767888999999999999
Q ss_pred EEEEc
Q 001228 422 IVYQG 426 (1119)
Q Consensus 422 iv~~G 426 (1119)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=311.89 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=163.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 358999999999999999999999999999999999864 1111389999999887532 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++. ||+||+.+.....+... ... ....+...++.+++. +..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERR-------------------KSV--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 99999987533211000 000 001234456677764 2345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ ||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 160 ~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 57877777775 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 232 ~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=312.85 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc---CCCCCcceEEEECCccCCCC-----cccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~---~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~ 255 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.. ++. ..+|+|.++|+++... ..++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 45999999999999999999999999999999999973 331 1389999999987542 12457999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc----c
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----A 331 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~ 331 (1119)
+++ .||.||+.+..+..+... .+ .....++++++.+||.+. .
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD--------------------NA-------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc--------------------HH-------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 887 699999987643221100 00 001234567888888643 3
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+..+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.++|
T Consensus 141 ~~~~~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~ 212 (250)
T PRK14245 141 KESAFA-----LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNMQ-QAARVS 212 (250)
T ss_pred hCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhC
Confidence 455544 999999999999999999999999999999999999999999999853 678887777654 788999
Q ss_pred CeEEEEcCCeEEEEcChhHHH
Q 001228 412 DDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 412 D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++++|++|+++++|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999998874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=304.82 Aligned_cols=196 Identities=25% Similarity=0.381 Sum_probs=165.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1119)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999886 999999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
+.+|+.||+.++....... .. . +....++.+++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~~---------~~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNL---------SY----------Q--------------EARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccCC---------CH----------H--------------HHHHHHHHHHHHcCChhhhhcChhh
Confidence 9999999998864321100 00 0 0112356788999998888887765
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++. +.+++|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999987655789999988874 56899999999
Q ss_pred cCCeE
Q 001228 418 SEGQI 422 (1119)
Q Consensus 418 ~~G~i 422 (1119)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=349.95 Aligned_cols=201 Identities=27% Similarity=0.437 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA- 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-
Confidence 35899999999999999999999999999999999999997 9999999999877543 5679999999998874
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC------ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL------DICADTM 334 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~ 334 (1119)
|++||+.++.. +.+.++ +...++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~-------------------------~~~~~~---------------i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAP-------------------------NASDEA---------------LIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCC-------------------------ccCHHH---------------HHHHHHHcCCHHHHcCccccCch
Confidence 99999987521 000011 1122233333 5678999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+|+. ++.||||||||++||||++.+|++++|||||++||+.+...+.+.|+++.+ ++|+|++.|+++ ....||+|
T Consensus 469 vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~--~~~~~d~i 543 (574)
T PRK11160 469 LGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLT--GLEQFDRI 543 (574)
T ss_pred hcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChh--HHHhCCEE
Confidence 9963 556999999999999999999999999999999999999999999998753 789999988874 45679999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=311.47 Aligned_cols=195 Identities=26% Similarity=0.415 Sum_probs=158.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+.+|+|+||+|++|++++|+||||||||||+++|+|... +..|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 459999999999999999999999999999999999865 357999999986532 234567999999998776 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccC------CCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+.||+.+... ... ...+.++++.+++.+..++.+. ...+.+||||||||++|||||+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999876421 111 1235677888888766554321 012357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEec
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
||||+|||+.++..+++.|++++++ +|||++||+++ ..+.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998754 89999999975 3478999999975 7777653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=313.39 Aligned_cols=207 Identities=23% Similarity=0.290 Sum_probs=165.0
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC--C-CeeEEEEEECCccCCh-----hhhcceEEEEccCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~ 951 (1119)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 469999999999999999999999999999999999643 1 1257999999987532 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
++. |+.||+.+...... ....+...+.+.++++.+++.+........ .+..||+|||||++|||||+.+|+||+||
T Consensus 96 ~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred Ccc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 875 99999987643221 112233445678889998875321111111 24579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+.++|+++. +|+|||++||+++ ++...+|++++|.+ |++++.|+..
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTD 230 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHH
Confidence 9999999999999999999986 4899999999975 57778899999965 7999988753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.27 Aligned_cols=207 Identities=21% Similarity=0.298 Sum_probs=164.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 358999999999999999999999999999999999853 4222389999999887421 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ +||+||+.+.....+.... .. ....++.+++.+|+.. ..+
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK-------------------QV--------------LDEAVEKSLKGASIWDEVKDRLH 143 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH-------------------HH--------------HHHHHHHHHHHcCCchhHHHHHh
Confidence 87 8999999876432211000 00 0112345677777643 234
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d 215 (252)
T PRK14239 144 DSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 57777777665 47889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=356.74 Aligned_cols=211 Identities=24% Similarity=0.359 Sum_probs=177.3
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. ++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEE
Confidence 46899999987641 1349999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~ 1002 (1119)
++ ...+++.++|++|++.+++. |++||+.++. +. .++.++++++.+++.+.. |..++..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CC----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 35678899999999999886 9999998752 11 133477888888876543 3334432
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|+++.+ ++|+|++||++ +....||++++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC
Confidence 357999999999999999999999999999999999999999999999864 79999999997 46677999999974
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 550 -G~i~~~G~~~ 559 (592)
T PRK10790 550 -GQAVEQGTHQ 559 (592)
T ss_pred -CEEEEEcCHH
Confidence 8999999854
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=314.66 Aligned_cols=192 Identities=28% Similarity=0.402 Sum_probs=153.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 359999999999999999999999999999999999865 458999999977532 233467999999988776 69
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC-----------CCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-----------KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
++||+.+....+ ... .+.+.++..++ ....+.. +..||+|||||++||++|+.+|
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGER-----GSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeeccC-----CccCCHHHHHHHHHHHHHhcCC
Confidence 999997743211 111 11222333332 2222222 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1026 ~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ ..||++++|.+ |++++.|+.
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999987 7999999999975 34 57999999975 789888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=311.26 Aligned_cols=204 Identities=20% Similarity=0.280 Sum_probs=167.8
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
.+.+|+++||+|++||+++|+|+||||||||+++|+|..+ +..|+|.++|. +++++|.+...+.+|+.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence 4579999999999999999999999999999999999866 45899999984 45677777777789999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
||+.+..... ....+...+.++++++.+++.+..+.. +..||+|||||++||+||+.+|+||||||||+|||
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD 175 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD 175 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 9998754332 122333445567888888988776665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCCChHHHHHHhh
Q 001228 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~~~~~l~~~f~ 1104 (1119)
+.++..+++.|.++.+.|+|||++||+++ .+.+.+|++++|. +|++++.|+..+......+||.
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~~~~~~~~~~~ 239 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELDDVLPKYEAFLN 239 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHHHHHHHhHHHHH
Confidence 99999999999999777999999999975 4667899999997 4789988886543334444443
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=312.07 Aligned_cols=207 Identities=26% Similarity=0.298 Sum_probs=160.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhh-cceEEEEccCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gy~~q~~~~~~~~ 955 (1119)
+.+|+|+||+|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.++.. ... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 46999999999999999999999999999999999974211458999999987532 122 34699999999888877
Q ss_pred CHHHHHHHHH-HhhcC---CCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 956 TVYESLLYSA-WLRLS---SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 956 tv~e~l~~~~-~l~~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++.+++.+.. .++.. .........+.++++++.+++. +..++.+ ...||+|||||++|||||+.+|+||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7766654321 11100 0011122345677889998884 3444432 126999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEEEecCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||+|||+.++..+.+.|+++++.|+|||++||+++ ..... +|++++|. +|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 9999999999999999999999877899999999975 34444 79999996 5789988874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=312.43 Aligned_cols=195 Identities=25% Similarity=0.377 Sum_probs=153.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++. |+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 93 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TI 93 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HH
Confidence 59999999999999999999999999999999999875 458999999976532 3456679999999887775 99
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-C-----CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-G-----LPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~-----~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+||+.+... .... ..+.+.++.+++.+..+... + ...+..||+|||||++|||+|+.+|++||||
T Consensus 94 ~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD 164 (229)
T cd03254 94 MENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164 (229)
T ss_pred HHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999976421 1111 12333444444433222210 0 0114579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||+|||+.+++.+++.|+++. +|+|||++||+++ ++ ..||++++|.+ |++++.|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~ 220 (229)
T cd03254 165 EATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGT 220 (229)
T ss_pred CccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCC
Confidence 9999999999999999999986 5899999999975 34 56999999975 78888776
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=304.78 Aligned_cols=183 Identities=24% Similarity=0.305 Sum_probs=153.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 4569999999999999999999999999999999999865 458999999987532 234567999999988888899
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
+.||+.+....+. . + .+.+.++++.+++.+..++. +..||+|||||++||||++.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~--~--~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG---G--A--QRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC---C--c--HHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987643321 1 1 23467899999998776665 357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
||+.++..+++.|+++.++|.|||++||++. + ..+++++
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~--~~~~~~~ 196 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL-G--LVEAREL 196 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-c--ccceEEe
Confidence 9999999999999998777999999999864 2 2345554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=359.44 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|++.+|+.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 35899999999999999999999999999999999999997 9999999998876543 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.++.+. +.+.++..+++...+ .+..++ .|+...||.||+ .+
T Consensus 563 TI~eNi~l~~~~------------------------~~~~~~i~~a~~~a~------l~~~i~--~lp~gldt~i~e-~G 609 (708)
T TIGR01193 563 SILENLLLGAKE------------------------NVSQDEIWAACEIAE------IKDDIE--NMPLGYQTELSE-EG 609 (708)
T ss_pred HHHHHHhccCCC------------------------CCCHHHHHHHHHHhC------CHHHHH--hcccccCcEecC-CC
Confidence 999999875210 011111122222111 111222 467788999986 45
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..||||||||++||||++.+|++|+||||||+||+.+...+.+.|+++ .++|+|++.|.++ +.+.||+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999874 3689988888874 66889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++..|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=311.61 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=165.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|++|++|++++|+||||||||||+++|+|..+ +....+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 2112489999999876432 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc----cc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----AD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~d 332 (1119)
++. ||+||+.+.....+..... .+ ....++.+++.+||.+. .+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK------------------KK--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH------------------HH--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 885 9999998753322110000 00 01124567888898652 34
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..++ .|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.+++|
T Consensus 145 ~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d 216 (251)
T PRK14244 145 DSAF-----ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSD 216 (251)
T ss_pred cChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcC
Confidence 4444 4999999999999999999999999999999999999999999999853 688888877764 7788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++|++++.|+.+++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 217 RVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987763
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.43 Aligned_cols=213 Identities=27% Similarity=0.356 Sum_probs=171.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCcceEEEECCccCCCCc---ccceEEEeccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFV---PQRTCAYISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-----~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~ 255 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++.... .++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 113799999999875432 2346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
.++.+||+||+.+....... .. +... . +....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GALT-H--------------RDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccCC-H--------------HHHHHHHHHHHHcCcHhhhcCCc
Confidence 66679999999875311000 00 0000 0 00123466888999988777777
Q ss_pred cCccCCCCChHHHHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~---------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
++ |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .+
T Consensus 144 ~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 TT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred cc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 76 9999999999999999 599999999999999999999999999998765577888887775 47
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
+.++||++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88899999999999999999987763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=313.30 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=168.6
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++ +..+|+++||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--- 66 (251)
T PRK09544 5 VSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--- 66 (251)
T ss_pred EEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc---
Confidence 56777765432 3469999999999999999999999999999999999865 45899999862
Q ss_pred hhhhcceEEEEccCCCCCCC--CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 935 QETFARVSGYCEQNDIHSPY--VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~--~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
..++|++|++.+++. .|+.+++.+. ... ..+.+.++++.+++.+..++. +..||+|||
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 126 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAP-----MQKLSGGET 126 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCC-----hhhCCHHHH
Confidence 359999999877665 4777766431 111 123467899999998777765 357999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++...||++++|. + ++++.|+
T Consensus 127 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~ 203 (251)
T PRK09544 127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGT 203 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCC
Confidence 9999999999999999999999999999999999999998765 899999999975 5667899999995 4 5888887
Q ss_pred CCC--ChHHHHHHhh
Q 001228 1092 LGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1092 ~~~--~~~~l~~~f~ 1104 (1119)
..+ ....+.++|.
T Consensus 204 ~~~~~~~~~~~~~~~ 218 (251)
T PRK09544 204 PEVVSLHPEFISMFG 218 (251)
T ss_pred HHHHhCCHHHHHHhC
Confidence 542 2234666664
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=315.44 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCC--C
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1119)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 999999998775432 245799999997 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 334 (1119)
+++..|+.|++.+....... ... ......++.+++.+||. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLS---------LDK------------------------AERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhcc---------CCH------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 66779999999764221000 000 00112356788899996 466777
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+++ |||||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++
T Consensus 149 ~~~-----LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i 222 (268)
T PRK10419 149 PPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRV 222 (268)
T ss_pred Ccc-----CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEE
Confidence 765 9999999999999999999999999999999999999999999998765577888887765 4778899999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=310.17 Aligned_cols=207 Identities=22% Similarity=0.368 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 12489999999876531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----ccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 332 (1119)
++ +||+||+.+.....+.... .. ....+++.++.+|+.. ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK-------------------HK--------------LDRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH-------------------HH--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 87 8999999886432211000 00 0112345677777753 345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
..+++ ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|++++.|++. ++.+++|
T Consensus 142 ~~~~~-----LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d 213 (250)
T PRK14262 142 KPGTR-----LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIAD 213 (250)
T ss_pred CChhh-----cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCC
Confidence 55544 999999999999999999999999999999999999999999999864 578777777654 6889999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|+++.+|+.+++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=309.95 Aligned_cols=206 Identities=20% Similarity=0.336 Sum_probs=164.5
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 212489999999987531 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----ccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 333 (1119)
+ +||+||+.|.....+.... .+ ....++.+++.+++. +..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-------------------KK--------------LDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999886432211000 00 011234556677664 23455
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 143 ~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~ 214 (250)
T PRK14240 143 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDK 214 (250)
T ss_pred CCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCE
Confidence 5555 999999999999999999999999999999999999999999999853 67888877765 478899999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=298.65 Aligned_cols=159 Identities=31% Similarity=0.430 Sum_probs=141.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----hhhcceEEEEccCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gy~~q~~~~~~~ 954 (1119)
+.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++..++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999865 458999999987532 2455789999999988888
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
.|++|++.+. ||+|||||++|||||+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999887532 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+|||+.++..+++.|++++++ |+|+|++||+++ ++...+|++++|++|
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999877 899999999975 455679999999763
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=343.55 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=175.8
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|++|.++. .+..+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 329 ~~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~ 395 (571)
T TIGR02203 329 GDVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHD 395 (571)
T ss_pred CeEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEe
Confidence 46899999987642 12358999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~ 1002 (1119)
++ ...+++.++|++|++.+++. |++||+.++. +.+. .++.++++++.+++.+..+ ..++..
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~ 466 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCC
Confidence 54 35567889999999988765 9999998652 1112 2344778888888765433 334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++||||++++|+||+||||||+||+.+++.|++.|+++. +++|+|++||++ .....||++++|++
T Consensus 467 -g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 467 -GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD 542 (571)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999885 479999999997 46788999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+++..|+..
T Consensus 543 -g~i~~~g~~~ 552 (571)
T TIGR02203 543 -GRIVERGTHN 552 (571)
T ss_pred -CEEEeeCCHH
Confidence 8999888743
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=306.11 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=168.3
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCCHHHHHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSA 965 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~ 965 (1119)
|+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.++ ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 5689999999999999999999999999865 45899999998753 2356799999998664 3479999998753
Q ss_pred HhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 966 WLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 966 ~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
..... ...........+.++++.+++.+..+.. +.+||+|||||++|||+|+.+|++|||||||+|||+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011122344578899999998777665 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhhhhcCCCc
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFEVSIPFFP 1111 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~~~i~g~~ 1111 (1119)
+.+.|+++.++|.|||++||+++ ++...||+++++ + |++++.|+..+ ..+.+.+.|. .-||-|
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~~-~~~~~~ 216 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTFG-VSDSSP 216 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHhC-CCCcch
Confidence 99999999877999999999975 577789999998 5 89999887543 3345666676 445555
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=319.67 Aligned_cols=207 Identities=18% Similarity=0.316 Sum_probs=163.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
..+|+|+|++|++|++++|+|||||||||||++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 359999999999999999999999999999999999854 2001389999999876432 124579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc----cccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 332 (1119)
++. ||+||+.|.....+... ... ....+..+++.+||. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGIND-------------------KKQ--------------LEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHhCCccchhhHhh
Confidence 875 99999988643221100 000 011234566677763 3445
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++. +.|+|++.|++ .++.+++|
T Consensus 178 ~~~~~-----LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 55555 999999999999999999999999999999999999999999999864 46777777665 47788999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+.+++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=307.27 Aligned_cols=190 Identities=24% Similarity=0.293 Sum_probs=155.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC--Cc--cCC---hhh----hcceEEEEccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY--PKN---QET----FARVSGYCEQN 948 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~--g~--~~~---~~~----~~~~~gy~~q~ 948 (1119)
..+|+|+||+|++||+++|+|+||||||||+++|+|... +..|+|.++ |. ++. ... .++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 469999999999999999999999999999999999865 357999998 42 321 111 13469999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 1027 (1119)
+.+++.+|+.|++.+..... ........+.+.++++.+++.+ ..+.. +.+||+|||||++|||||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998754322 1222334456788999999975 33443 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+...||+++.+
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~ 222 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDV 222 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEec
Confidence 9999999999999999999999999877999999999964 345678998876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=310.03 Aligned_cols=201 Identities=27% Similarity=0.413 Sum_probs=167.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCCCH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (1119)
+|+|||+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999874 3 8999999998754332 3468999999888888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.+.... .. . ..+ ....++.+++.+||++..++.+++
T Consensus 87 ~~nl~~~~~~-~~-~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (248)
T PRK03695 87 FQYLTLHQPD-KT-R-------------------TEA--------------VASALNEVAEALGLDDKLGRSVNQ----- 126 (248)
T ss_pred HHHHHhcCcc-CC-C-------------------cHH--------------HHHHHHHHHHHcCCHhHhcCCccc-----
Confidence 9999875221 00 0 000 012346788999998888888776
Q ss_pred CChHHHHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~-------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|||||||||+||+||+. +|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999875 367877777665 47889999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987663
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=309.85 Aligned_cols=206 Identities=23% Similarity=0.385 Sum_probs=162.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 45899999999999999999999999999999999999886 999999998765432 2457999999988775 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc--CCcccccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 338 (1119)
||+||+.+... .. . .+... +... .......++.+ |++...+..+++
T Consensus 91 tv~~nl~~~~~--~~-~-~~~~~---------------------~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~- 138 (237)
T cd03252 91 SIRDNIALADP--GM-S-MERVI---------------------EAAK------LAGAHDFISELPEGYDTIVGEQGAG- 138 (237)
T ss_pred hHHHHhhccCC--CC-C-HHHHH---------------------HHHH------HcCcHHHHHhCcccccchhhcCCCc-
Confidence 99999987432 10 0 00000 0000 00112344444 555545555555
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++ ..||++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 139 ----LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999863 788888888775 45 5699999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=309.56 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=165.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CcceEEEECCccCCCC-----cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1119)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC----ccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~d 332 (1119)
++.+||.||+.++....+... . ... ....+..++.+++ .+..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~------------------~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-R------------------DHL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-H------------------HHH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543211000 0 000 0112334445544 23456
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 66665 999999999999999999999999999999999999999999999864 57777777765 47888999
Q ss_pred eEEEEcCCeEEEEcChhHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=313.08 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=172.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC--C-eeEEEEEEC
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 929 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~ 929 (1119)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3477888776442 24699999999999999999999999999999999997642 1 258999999
Q ss_pred CccCC-------hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC----ccccc
Q 001228 930 GYPKN-------QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSM 998 (1119)
Q Consensus 930 g~~~~-------~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 998 (1119)
|.+.. ...+++.++|++|++.+++. |++||+.+....... . .....++.+.++++.+++.+ ..++.
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV-K-RRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC-C-hHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87542 12345679999999988876 999999876432211 1 11222345777888887742 22333
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 999 ~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+..||+|||||++|||+|+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999975 5667899999
Q ss_pred EEecCcEEEEecCCC
Q 001228 1079 LLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~ 1093 (1119)
+|.+ |++++.|+..
T Consensus 232 ~l~~-G~i~~~g~~~ 245 (265)
T PRK14252 232 YMYM-GELIEFGATD 245 (265)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9974 8898888753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=285.92 Aligned_cols=226 Identities=26% Similarity=0.325 Sum_probs=189.3
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
+..+|+.+.++ +++.+|++||++|++||+.+||||||||||||.++|+|.+.+.+.+|+|.++|.++.
T Consensus 4 L~I~dLhv~v~------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 4 LEIKDLHVEVE------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eEEeeeEEEec------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 56677766553 114799999999999999999999999999999999999887788999999999864
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCH
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~ 1009 (1119)
. +..+..+...+|.|.-.|..++.+.|......+........+....+.+.++.+++.+ +.++.+.. ++||
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSG 147 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCc
Confidence 3 3345568899999999999999999987665433221113445667889999999987 66776653 7999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhh--ceEeEEecCcEEE
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRVI 1087 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~~l~l~~gG~v~ 1087 (1119)
|||||..|+..++.+|++.+||||-||||..+-+.|-+.++.+++.|+++++|||.. .+.... |++.+|.+ |+|+
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrIv 224 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRIV 224 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999999999999984 566666 99999986 8999
Q ss_pred EecCCCCChHHHHHHhh
Q 001228 1088 YAGPLGHESHKLIEYFE 1104 (1119)
Q Consensus 1088 ~~g~~~~~~~~l~~~f~ 1104 (1119)
..|.. +|.++++
T Consensus 225 ~sG~~-----el~~~le 236 (251)
T COG0396 225 KSGDP-----ELAEELE 236 (251)
T ss_pred ecCCH-----HHHHHHH
Confidence 99974 5666666
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=293.32 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=185.9
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.++.+++|+||.++||+|++++|||||||||.+++|.|.+.|+ +|+|+++|.+++... +..|||.|.+--+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 5678999999999999999999999999999999999999997 999999999887543 357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.|.|.|.|+++|.... +.....++.|+.+++......+|-+
T Consensus 89 v~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~kIk~---- 130 (300)
T COG4152 89 VEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKKIKE---- 130 (300)
T ss_pred HHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccchHHH----
Confidence 99999999999875321 1123457789999998888888766
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
||-|.+|++.+-.++++.|++++||||+|||||.++..+-+.+.++.. .|.|+|.+.|. ...+.++||++++|++|+
T Consensus 131 -LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~-Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 131 -LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHR-MEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred -hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecch-HHHHHHHhhhhheecCCc
Confidence 999999999999999999999999999999999999999999999876 58888888765 568999999999999999
Q ss_pred EEEEcChhHHHHHH
Q 001228 422 IVYQGPRDNVLEFF 435 (1119)
Q Consensus 422 iv~~G~~~~~~~~f 435 (1119)
.|.+|+.+++..-|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998744
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=323.65 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=170.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
+.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.+++++|...+|..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG 426 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH
Confidence 346999999999999999999999999999999999999998 9999999998876554 4689999999888864
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC-------ccccc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-------DICAD 332 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~d 332 (1119)
|+|+||.++.. +...++. -.+++..|| ++..|
T Consensus 427 -Tlr~NL~lA~~-------------------------~AsDEel---------------~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 427 -TLRDNLRLANP-------------------------DASDEEL---------------WAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred -HHHHHHhhcCC-------------------------CCCHHHH---------------HHHHHHcCHHHHHHhChhhhh
Confidence 99999987532 1111111 123333333 44678
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
|.+|+ .+++||||||||++|||+|+.|+++++|||||.|||+.|..++++.+..-++ |+|+++++|+-. -.+.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcC
Confidence 89985 6678999999999999999999999999999999999999999999987654 899999988764 357899
Q ss_pred eEEEEcCCeEEEEcChhHHHH
Q 001228 413 DIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|++|+++++|.+.++..
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999874
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=302.70 Aligned_cols=183 Identities=25% Similarity=0.325 Sum_probs=154.7
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCCCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+..+|+|+||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++..|
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 3469999999999999999999999999999999999876 458999999987642 345678999999988888999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.+.... . . ....+.++++.+++.+..++. +..||+|||||++|||||+.+|++|+|||||+|
T Consensus 91 v~~~~~~~~~~--~--~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 91 LRENCLYDIHF--S--P----GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred HHHHHHHHHhc--C--c----chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999876421 1 1 123578899999997766655 347999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEe
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
||+.+++.+.+.|+++.++|+|||++||+++ ....+|...
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999998777999999999964 445566543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=309.97 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=164.6
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCcceEEEECCccCCCC-----cccceEEEeccCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1119)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998731 12489999999987531 1246799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc----cccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 333 (1119)
+. ||+||+.+.....+... + .. ....++++++.+||.+ ..+.
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~-----------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R-----------------RV--------------LDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H-----------------HH--------------HHHHHHHHHHHcCCChhHHHHhhC
Confidence 86 99999987643321100 0 00 0112345677777753 2344
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||+
T Consensus 165 ~~~-----~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~ 236 (272)
T PRK14236 165 NAF-----GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDY 236 (272)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999999864 57877777665 478889999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
+++|++|+++..|+.+++.
T Consensus 237 i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 237 TAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEECCEEEecCCHHHHh
Confidence 9999999999999988763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=343.86 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=166.5
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-----------------------CccC--
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-----------------------GYPK-- 933 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-----------------------g~~~-- 933 (1119)
++.+|+|+||+|.+||++||+||||||||||+++|+|.....+.+|+|.++ |.++
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 356999999999999999999999999999999999974111357999987 2111
Q ss_pred --------Ch---hhhcceEEEEccC-CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC
Q 001228 934 --------NQ---ETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001 (1119)
Q Consensus 934 --------~~---~~~~~~~gy~~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 1001 (1119)
.. ...++.++|++|+ +.+++.+||+|++.+...... ....+.++.+.++++.++|.+..++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~--- 165 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHI--- 165 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcC---
Confidence 00 1234569999997 577888999999988653321 22334456788999999998777765
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+...||++++|
T Consensus 166 --~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 166 --ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999965 4899999999975 466789999999
Q ss_pred ecCcEEEEecCC
Q 001228 1081 KRGGRVIYAGPL 1092 (1119)
Q Consensus 1081 ~~gG~v~~~g~~ 1092 (1119)
.+ |++++.|+.
T Consensus 243 ~~-G~i~~~g~~ 253 (520)
T TIGR03269 243 EN-GEIKEEGTP 253 (520)
T ss_pred eC-CEEeeecCH
Confidence 75 788887764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=274.62 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=174.9
Q ss_pred CcccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEecc
Q 001228 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQ 252 (1119)
Q Consensus 180 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q 252 (1119)
.....+||++|++.|++||-++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++.... ..+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 345688999999999999999999999999999999999999887 999999999986543 1367999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
...++|+||-.||+..-..+++.+.+ + ........|+.+||.+-.+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~----------------------~------------~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSA----------------------D------------SRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccc----------------------c------------HHHHHHHHHHHhCcccccc
Confidence 99999999999999887666553211 0 0112356789999999888
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
-+.+. |||||+|||+||||+...|+|||-||||-.||..|..+|.+.|-.+.++.|.|.|+.+|.| ....-||
T Consensus 142 HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~ 214 (228)
T COG4181 142 HYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCD 214 (228)
T ss_pred cCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhh
Confidence 88877 9999999999999999999999999999999999999999999999988899999988876 4678899
Q ss_pred eEEEEcCCeEEE
Q 001228 413 DIILLSEGQIVY 424 (1119)
Q Consensus 413 ~i~lL~~G~iv~ 424 (1119)
|++-|..|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1119 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 7e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1119 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-23 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-15 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-09 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-07 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-14 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-05 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-11 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 8e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 8e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 6e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 6e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 9e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-04 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 5e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 7e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 3e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 5e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 37/237 (15%)
Query: 866 MPAEMKTEGVG---EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 920
M + E +G + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 921 YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDT 975
IE + G+ Q +V + +L + D
Sbjct: 61 KIE--------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 976 KKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035
+ + ++ + L L + LS QR+ + IA + + +I +DEPTS
Sbjct: 107 QV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1036 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
LD IV+ + + TVV T HQP+ + ++ LLL + G
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 7e-13
Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 56/250 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ + ++ + + +LG G GK+TL+ L G GKI E+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKI-----EVY-----Q 66
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-ELLAELSRREKQAGIKPDPEIDAFM 304
+ ++ Q +V + + GR + + A+ + Q
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIVLM-GR-----STHINTFAKPKSHDYQV------------ 108
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
L L L A +SGGQ++ + + ++
Sbjct: 109 -------------AMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLI 150
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD + + L + ++T++ + + +LL++
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNF 207
Query: 423 VYQGPRDNVL 432
+ G N+L
Sbjct: 208 KF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
G + L+G +GAGKTT + +++ + + G + + G + ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
+ + E L + A + + + V+ E+ L V
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----T 146
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 53/268 (19%), Positives = 84/268 (31%), Gaps = 82/268 (30%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-- 240
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 241 --------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++P+ AY M E L F S E +
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA----------SSSSEIEE 125
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ + +I GL V S G +++
Sbjct: 126 MV------------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLL 156
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQ 402
L+ + +DE ++GLD ++ K LKQ H +
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------- 207
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDN 430
E L D I L+ G IV G +
Sbjct: 208 ---EVEFLCDRIALIHNGTIVETGTVEE 232
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 38/200 (19%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
G + G +G GKTTL+ ++ + +G+I +G P + ++ + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGKI-FFLPEE 86
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
I ++V + L A L K K + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
+R+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1068 IDIFEAFDELLLLKRGGRVI 1087
D L + I
Sbjct: 193 --ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 2e-17
Identities = 36/265 (13%), Positives = 87/265 (32%), Gaps = 60/265 (22%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+ S L + L S +L+ ++ ++ + GP G GKTTL+ ++ L
Sbjct: 5 HHHGSKLEIRDL--SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G+I Y G + + + ++ + + +++V + L GV
Sbjct: 63 ---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV--------- 108
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI- 343
+ + L+ + + ++++ +
Sbjct: 109 -KVNKNEI--------------------------MDALESVEV---------LDLKKKLG 132
Query: 344 --SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
S G +RV L+ A + +D+ +D + ++ K + +++ + +I
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS--- 189
Query: 402 QPAPETYDLFDDIILLSEGQIVYQG 426
+ E D L +
Sbjct: 190 --SREELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIE- 923
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG G I+
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 924 GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
+ + + A Y Q V+ L + K R ++
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLN 108
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 1036
+V + L + LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
LD + + + + G +V + H D+ LLK GG+++ +G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 51/273 (18%), Positives = 82/273 (30%), Gaps = 90/273 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
AY+SQ V L + +K E+
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-----------------YLTLHQHDKT-----RTEL- 106
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT-------TG 354
+ V L LD +SGG+ +RV
Sbjct: 107 ----------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---------VTMIVALLQPAP 405
+L +DE LD + Q + + ++++
Sbjct: 146 PQANPAGQLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS----- 190
Query: 406 ETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL LL G+++ G R+ VL
Sbjct: 191 --HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 4e-21
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 35/229 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETF 938
+L +S G L G++GAGKTTL+++L T G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 939 ------ARVSGYCEQNDIHSPY---VTVYESLL-----YSAWLRLSSDVDTKKRKMFVDE 984
+ G+ + + V + ++ + D + +
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE----AHQ 144
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++LV + + +G LST +++R+ IA L+ P ++ +DEP +GLD A
Sbjct: 145 LLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199
Query: 1045 VMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
++ + + ++ H +I F ++LLLK G+ I G
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 51/259 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
ILK +S + +L G GAGKTTL+ L SG + G +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90
Query: 244 Q----RTC-AYISQ--HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
R ++S + V + + SG +G Y+
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVV-ISGAFKSIG-VYQ--------------DI 134
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
D E ++ A +LK++G+ A +G +S G+K+RV
Sbjct: 135 DDE----IRNEA----------HQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARA 175
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVAL--LQPAPETYDLFDD 413
L+G VL +DE + GLD + L + + MI ++ F
Sbjct: 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSK 232
Query: 414 IILLSEGQIVYQGPRDNVL 432
I+LL +GQ + QG +++L
Sbjct: 233 ILLLKDGQSIQQGAVEDIL 251
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 3e-19
Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 35/224 (15%)
Query: 846 MILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQ------LLHSVSGVFRPGVLTALM 899
L F+ +L F D+ + + L+ +L+ G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 900 GVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
G +G GKTTL+ +LAG + G + +S P+ TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017
+ L F +V++ + + + D V LS + +R+ I
Sbjct: 431 RQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1018 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEG---DIKISGYPKNQETFARVSGYC 945
RPG + L+G +G GK+T + +LAG + G + +I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 946 EQND---IHSPYV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
E + I YV + + L + +K V +++++L+++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 DI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1058 TVV 1060
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-12
Identities = 44/220 (20%), Positives = 72/220 (32%), Gaps = 56/220 (25%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K + +L G S + +++G G GKTTL+ LAG L D G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+P+ + Q TVR+ + + + Q
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKK-----------IRGQFLNPQFQ------- 448
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
V+K L +D D V +SGG+ +RV L
Sbjct: 449 --------------------TDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A++ +DE S LDS K +++ + T +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 71/263 (26%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ +P ++ L+G G GK+T + LAGK +L G+
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFD---------- 135
Query: 243 PQRTCAYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+E + F G L + L K IKP +D
Sbjct: 136 ---------------DPPEWQEIIKYFRGSEL----QNYFTKMLEDDIKAI-IKP-QYVD 174
Query: 302 AFMKAV-----------AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQ 347
+A+ + +++ +KIL L+ + ++R I SGG+
Sbjct: 175 NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE--------NVLKRDIEKLSGGE 226
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
+R G V A+V DE S+ LD + ++ ++ +I
Sbjct: 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV-------E 278
Query: 408 YDLF------DDIILLSEGQIVY 424
+DL D + ++ VY
Sbjct: 279 HDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 1e-18
Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 31/206 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN-D 949
G ++G +G+GKTTL+ ++G G+I I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSGLS 1008
+ VTV + + L+ + E+++ ++L + + + LS
Sbjct: 83 AYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKL-----YKLS 130
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH---- 183
Query: 1069 DIFEAF---DELLLLKRGGRVIYAGP 1091
++ + G R+
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 43/264 (16%), Positives = 82/264 (31%), Gaps = 68/264 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L++++ V ++LGP G+GKTTL+ A++G L SG I G E
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 238 LNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ + R + + +TV + + G+
Sbjct: 67 VRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGL--------------------D 104
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+KA+ L + + +S GQ V T
Sbjct: 105 RDLFLEMLKAL-------KLGEEI----------LRRKLYK-----LSAGQSVLVRTSLA 142
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------L 410
L ++ +DE +D++ I +++K+ I+ T++
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THELDMLNLY 191
Query: 411 FDDIILLSEGQIVYQ-GPRDNVLE 433
+ G + +LE
Sbjct: 192 KEYKAYFLVGNRLQGPISVSELLE 215
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-18
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L G R G + ++G +G GKTT + +LAG T G +E D+ ++
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA----------- 420
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Y Q TVYE L D + E+++ + + L D V
Sbjct: 421 ---YKPQYIKAEYEGTVYELLS-------KIDSSKLNSNFYKTELLKPLGIIDLYDRNV- 469
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1059
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 470 ----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1060 V 1060
+
Sbjct: 526 L 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 8e-15
Identities = 61/302 (20%), Positives = 107/302 (35%), Gaps = 82/302 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L+ G ++ + ++GP G GKTT + LAG GK+ +
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTV 419
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ PQ YI E TV E LL+++ + +
Sbjct: 420 A--YKPQ----YIKAEY----EGTVYE----------------LLSKIDSSKLNSNFY-- 451
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
T+ +LK LG+ D V D +SGG+ +RV L
Sbjct: 452 -------------------KTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------ 411
+ A++ +DE S LD + + ++ ++ + T +V +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVS 539
Query: 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKN 469
D +I+ EG+ G + R+G+ FL +T ++D + R N
Sbjct: 540 DRLIVF-EGEPGRHGRALPPM----------GMREGMNRFLASVGITFRRDPDSGRPRAN 588
Query: 470 QP 471
+
Sbjct: 589 KE 590
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKN--Q 935
+L+ + V + G++ ++G +G GKTT + +LAG+ D I + N Q
Sbjct: 107 VLYRLPIV-KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
F R+ + + YV + + L VD + +EV++ +EL+++
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVL 222
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D + LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 1056 GRTVV 1060
G+ V+
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-07
Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 59/228 (25%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNE 240
+ IVK + ++GP G GKTT + LAG+L +L S NE
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 241 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP-DPE 299
+ +
Sbjct: 164 ---------------------------------------LQNYFERLKNGEIRPVVKPQY 184
Query: 300 IDAFMKAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+D K AV G+ L+ + V+K L L+ D + +SGG+ +RV
Sbjct: 185 VDLLPK--AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRV 237
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
L+ A+ + DE S+ LD ++ + ++++ + ++V
Sbjct: 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVV 284
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 3e-17
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L G + G + ++G +G GKTT + +LAG T G IE D+ ++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA----------- 350
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Y Q TVYE L D + E+++ + + L D V
Sbjct: 351 ---YKPQYIKADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1059
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1060 V 1060
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-14
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 82/301 (27%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K L+ G +K + ++GP G GKTT + LAG GKI +
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ PQ YI E TV YELL+++ + +
Sbjct: 351 --YKPQ----YIKAD----YEGTV----------------YELLSKIDASKLNSNFY--- 381
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
T+ +LK LG+ D V + +SGG+ +RV L+
Sbjct: 382 ------------------KTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +DE S LD + + ++ ++ + T +V +D+ D
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVSD 470
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
+++ EG+ G + R+G+ FL +T ++D + R N+
Sbjct: 471 RLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIGITFRRDPDTGRPRANK 519
Query: 471 P 471
Sbjct: 520 E 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKN--QETFARVSGY 944
+ G++ ++G +G GK+T + +LAG+ G D I + N Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 945 CEQNDIH----SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+I YV + + + L D + ++EV++ +EL+++ +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLER--- 154
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 155 --EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 76/258 (29%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
+VK + ++GP G GK+T + LAG+L
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL-------------------------- 71
Query: 248 AYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSR-REKQAGIKP-DPEIDAFM 304
+L + + F G EL + + + +D +
Sbjct: 72 ----IPNLCGDNDSWDGVIRAFRGN--------ELQNYFEKLKNGEIRPVVKPQYVD--L 117
Query: 305 KAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGI---SGGQKKRVTT 353
AV G+ L+ + V+K L L+ + + R I SGG+ +RV
Sbjct: 118 IPKAVKGKVIELLKKADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRVAI 169
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
L+ A + DE S+ LD + ++++ +++V +DL
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-------EHDLAVL 221
Query: 412 ----DDIILLSEGQIVYQ 425
D I ++ VY
Sbjct: 222 DYLSDIIHVVYGEPGVYG 239
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 5e-17
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +G + G + ++G +G GKTT +L G G + + +I Y K Q F
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP- 341
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+ TV + +L +S F +EV + + L L +S V
Sbjct: 342 -----------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
+ LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1061 CTI 1063
I
Sbjct: 440 FII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 61/301 (20%), Positives = 106/301 (35%), Gaps = 80/301 (26%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
KK L +G K + +LGP G GKTT L G++ D G +T L
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+Y Q + + TV++ L+
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLE------------------------------- 352
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
A A +S + V K L L ++ V D +SGG+ +++ L
Sbjct: 353 ------NASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +D+ S+ LD + + K +K++ + +DL D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIAD 454
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
II+ +G+ G + + + G+ +FL+E VT ++D E R N+
Sbjct: 455 RIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETGRPRVNK 503
Query: 471 P 471
Sbjct: 504 I 504
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
+ + ++G +G GKTT++ +LAG + + + K E R G N
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYN 76
Query: 949 DIHSPY---------VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
Y + E ++ + + DEV EL+ + +L +
Sbjct: 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWN--- 133
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 134 --KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 1060 VCTIH 1064
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 65/329 (19%)
Query: 187 LKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
K K + + +LG G GKTT++ LAG++ + E+ + +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF-GDPNSKVGKDEVLKRFRGK 72
Query: 246 TCAYISQHDLHHGEMTVR--ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ + V + ++++ + L GT E+L ++ R K
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKIDERGK------------- 118
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
D V ++L + + +SGG +R+ L+ A+V
Sbjct: 119 --------------KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADV 159
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIILL 417
D+ S+ LD + K +++++ + +IV +DL D I ++
Sbjct: 160 YIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVV-------DHDLIVLDYLTDLIHII 210
Query: 418 SEGQIVYQGPRD--NVLEFF----------EHMGFKCPERKGVADFLQEVTSKKDQEQYW 465
VY E+M + E K + + ++ KD +
Sbjct: 211 YGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM 270
Query: 466 FRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494
+ V+ G+ I
Sbjct: 271 KWTKIIKKLGDFQLVVDNG-EAKEGEIIG 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 7e-17
Identities = 102/693 (14%), Positives = 194/693 (27%), Gaps = 203/693 (29%)
Query: 45 FSRSERQ----DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
F E Q D A ++ D M +L + + H + + AV
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSK-EEIDHIIMSKD-AVSGT 64
Query: 101 KRLLESIL----KIVE-------EDNEKFLK-RIRHRT-DRVGIEIPKIEVRYDHLSVEG 147
RL ++L ++V+ N KFL I+ + IE R D L
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRL--YN 121
Query: 148 DVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPG 207
D V + NV + L+ L L ++++ L+ ++ + G G
Sbjct: 122 DNQVFAK-----YNV--SRLQPYLKL-------RQALLELRPAKNVL-------IDGVLG 160
Query: 208 AGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267
+GKT + L + + KI + + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW--------------------------LNL----- 189
Query: 268 FSGRCLGVGTRYELLAELSRR-EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326
C T E+L +L + + + D + ++ ++ + L+ +
Sbjct: 190 --KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-C 246
Query: 327 LDICADTMVGD-EMRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTF 379
L + + V + + + K +TT V T + +D S L
Sbjct: 247 LLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 380 QIC-KFL--------KQMVHI--LDVTMIVALLQPAPETYDLFDD--------IILLS-- 418
+ K+L ++++ +++I ++ T+D + II S
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 419 -----EGQIVYQG----PRD-----NVLEFF-EHMGFKCPERKGVADFLQEVTSKKDQEQ 463
E + ++ P +L + + ++ E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVE- 418
Query: 464 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWEL 523
++ + S +L+V + A S+V + Y I K
Sbjct: 419 ---KQPKESTI-----------SIPSIYL---ELKVKLENEYALHRSIV-DHYNIPK--- 457
Query: 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFS 583
F L+ Y + + + + F +F
Sbjct: 458 ---TF-DSDDLIPPYLDQYFYS--------------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 584 LLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTY 643
F E K R H A SIL+ T+ Y
Sbjct: 500 F------RFLEQ-----------KIR-HDSTAWNA----------SGSILN-TLQQLKFY 530
Query: 644 --YTIGYDPAASRFFKQFLAFFSIHNMSLPLYR 674
Y DP R L F + + L
Sbjct: 531 KPYICDNDPKYERLVNAILDF--LPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 2e-05
Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 81/246 (32%)
Query: 879 RLQLLHSVSGVF---RPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDIKISGYPKN 934
RLQ + RP + GV G+GKT + +DV K+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL----------SYKV------ 176
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
Q I WL L + + V+E+ L+ L
Sbjct: 177 QCKMD--------FKIF--------------WLNLKNCNSP-------ETVLEM--LQKL 205
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIVMRTVRNTV 1053
+ S +L I + A + +P + L +V+ V+N
Sbjct: 206 L-YQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------LVLLNVQNA- 256
Query: 1054 DTGRTVVCTIHQPSIDIFEAFD---ELLLLKRGGRVIYAGPLGHESHKLIEYFEVSIPFF 1110
+ AF+ ++LL R +V +H ++ S+
Sbjct: 257 ---------------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLT 299
Query: 1111 PALSVD 1116
P
Sbjct: 300 PDEVKS 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 8e-05
Identities = 78/497 (15%), Positives = 135/497 (27%), Gaps = 161/497 (32%)
Query: 686 SNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNK 745
GT L + M + +E LR Y +FL + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---------------KFLMSPIKTEQR 103
Query: 746 DPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSF----LFNFLFIAALAYLNPIGD 801
PS+ R + + + + Y+ + L AL L P
Sbjct: 104 QPSMMT----------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRP--A 150
Query: 802 SNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQ------------------NVTN 843
N + G+ S KT A N+ N
Sbjct: 151 KNVLI------------D---GV----LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 844 ----RGMILPFQPLSLTFD-NMSYFVDMPAEMKTE-GVGEDRLQ-LLHS---------VS 887
++ Q L D N + D + +K + L+ LL S +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 888 GVFRPGVLTA-------LMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
V A L+ TT + D L+ T +I D ++
Sbjct: 252 NVQNAKAWNAFNLSCKILL-------TTRFKQVTDFLSAATT-THISLDHHSMTLTPDEV 303
Query: 936 -ETFARVSGYCEQNDI------HSPYVTVYESLLYSAWLRLSSDVDTKK--RKMFVDEVM 986
+ C D+ +P S++ + + T + + D++
Sbjct: 304 KSLLLKYLD-CRPQDLPREVLTTNPRRL---SII---AESIRDGLATWDNWKHVNCDKLT 356
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE---PTSGLDARAAA 1043
++E SLN L E RK L +F PT L
Sbjct: 357 TIIE-SSLNV----LE-----PAEYRKMF---DRLS-----VFPPSAHIPTILLSLIWFD 398
Query: 1044 IVMRTVRNTVDT----------GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI--YAGP 1091
++ V V+ + +I +++ + L R ++ Y P
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIP 456
Query: 1092 LGHESHKLI-----EYF 1103
+S LI +YF
Sbjct: 457 KTFDSDDLIPPYLDQYF 473
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIK 927
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 928 ISGYPKNQETFAR--VSGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRK 979
+ ++ T R G+ Q N I P +T E+ L++ + + ++R+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERR 122
Query: 980 MFVDEVMELVELKSLNDSMVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
E +++ EL+ + P + LS Q++R+ IA L NP II D+PT LD
Sbjct: 123 KRALECLKMAELE---ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1039 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1068
++ +M+ ++ + G+TVV H ++
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 28/218 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +VS V G + G +G+GK+TL+ ++AG T GD+ G K R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 941 VSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
G Q P V++ + ++ D D V + ME V L
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFAV-KNFYPDRDPVPL---VKKAMEFVGL---- 126
Query: 996 DSMVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 127 -DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G+TV+ H + D +++L++ G+ ++ G
Sbjct: 186 TLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
SGG+K+RV ++V ++L +DE GLD + + +++ L T+I+ +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI 198
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFE 436
+ D +++L +G+ V+ G R LE ++
Sbjct: 199 ----ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 4e-15
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPKNQE 936
++L +S + G +++G SG+GK+TL+ +L T G ++ + +
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 937 TFAR--VSGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ R G+ Q I P +T E+ +L K+ K + ++
Sbjct: 77 SLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSE 127
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L D + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 LGLG---DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 1049 VRNTVDTGRTVVCTIHQPSI 1068
+ G ++V H+ +
Sbjct: 183 FLKINEGGTSIVMVTHEREL 202
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 47/230 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L ++ + G +TA++G +G GK+TL G + + G I + I K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 940 RVSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDV------------DTKKRKMFV 982
G Q+ P +VY+ DV + +KR V
Sbjct: 84 ESIGIVFQD----PDNQLFSASVYQ------------DVSFGAVNMKLPEDEIRKR---V 124
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
D ++ ++ L D LS Q+KR+ IA LV P ++ +DEPT+GLD
Sbjct: 125 DNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ +M+ + + G T++ H + D + ++K GRVI G
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 7e-08
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
D++ ++ EG+++ QG V E + + P + + L+E
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQ- 935
++ GV G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 936 ------ETFARVSGYCEQNDIHS-PYVTVYE-----------SLLYSAWLRLSSDVDTKK 977
TF Q +TV E S L S + + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 978 RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
+ +++E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1038 DARAAAIVMRTVRNTVDTGRTVV 1060
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 55/255 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 CAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
Y I Q EMTV E L C G L + ++ E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---ESPLNSLFYKKWIPK------EEEM 130
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
KA +L+ L L D G+ +SGGQ K V G L+
Sbjct: 131 VEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDLFD 412
++ MDE G+ I + ++ H LD+ + + D
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NYID 221
Query: 413 DIILLSEGQIVYQGP 427
+ ++ GQI+ +G
Sbjct: 222 HLYVMFNGQIIAEGR 236
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSP 953
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
+++VY ++ Y LR V+ +R V E+ E + + L D + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDAR 1040
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 54/232 (23%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKI 928
D + L VS PG AL+G SGAGK+T++ D+ +G I+G DI
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR---IDGQDIS- 119
Query: 929 SGYPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFV 982
Q + G Q ND T+ +++ Y R++ +
Sbjct: 120 ---QVTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTAGN---------- 157
Query: 983 DEVMELVELKSLNDSMVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
DEV + ++D+++ P G+ LS +++R+ IA ++ P II +DE
Sbjct: 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDE 216
Query: 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
TS LD + ++ V RT + H+ S + A D++L++K G
Sbjct: 217 ATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 4e-10
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKNQETFA 939
LL+ + + G +G GK+TLM +A + G+ + + +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 940 RVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
Y E + D +V + + S V TK+ + + + D M
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFV-------FESGVGTKEA---IKDKLIEFGFT---DEM 541
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +P +S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ D++ S ++GP GAGK+TL+ L G+L SG++ Y
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEV-YTHENC------- 736
Query: 246 TCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
AYI QH H E + +T ++ G E + +R+ + + +I
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKI 792
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 53/386 (13%), Positives = 110/386 (28%), Gaps = 101/386 (26%)
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K ++E I I + ++ + + + + + + +
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423
Query: 161 NVALNMLESALGLLHLVPSKKRSVR-ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
+ + L + S + +L +K +R + GP G GK+TLM A+A
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483
Query: 220 KL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
G + + Y H++ D H + +V + +
Sbjct: 484 GQVDGFPTQEECRTVYVEHDI---------------DGTHSDTSVLDFV-----FESGVG 523
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
E + + L G +
Sbjct: 524 TKEAIKD------------------------------------KLIEFGFTD-------E 540
Query: 338 EMRRGI---SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
+ I SGG K ++ ++ A++L +DE + LD+ + +L
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS-- 598
Query: 395 TMIVALLQPAPETYDLF------DDIILLSEGQIV-YQGPRDNVLEFFEHMGFKCPERKG 447
+ + ++D + II ++ Y+G N EF + KCP K
Sbjct: 599 -ITI--------SHDSVFLDNVCEYIINYEGLKLRKYKG---NFTEFVK----KCPAAK- 641
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYR 473
+ + + Y
Sbjct: 642 ------AYEELSNTDLEFKFPEPGYL 661
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 7e-10
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 72/223 (32%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKI 928
D +L +++ + G + ++G SG+GK+TL G+ + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLI 68
Query: 929 SGY------PK---------NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
G+ P Q+ R ++ +++ +
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA------- 106
Query: 972 DVDTKKRKMFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021
M V++V+ + EL+ +++VG G LS QR+R+ IA L
Sbjct: 107 -----NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARAL 160
Query: 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
V NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 67/255 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +++ +K + ++G G+GK+TL + R +G++ GH+L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALA 76
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P R + Q + + + S + + P
Sbjct: 77 DPNWLRRQVGVVLQ-----------DNVLLNR---------------SIIDNISLANPGM 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
++ + A +AG D+ I L +T+VG+ +G SGGQ++R+
Sbjct: 111 SVEKVIYAAKLAG-----AHDF---ISELREGYNTIVGE---QGAGLSGGQRQRIAIARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLF 411
LV +L DE ++ LD + I + + ++ T+I+ + ++ A
Sbjct: 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA------- 210
Query: 412 DDIILLSEGQIVYQG 426
D II++ +G+IV QG
Sbjct: 211 DRIIVMEKGKIVEQG 225
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 45/228 (19%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP-- 932
+ + L S++ G AL+G +G+GK+T+ +L R Y EGDIKI G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVN 84
Query: 933 -KNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEV 985
N+ + + G Q N+ T+ ++LY +L +D +EV
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG---KLDATD----------EEV 125
Query: 986 MELVELKSLNDSMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
++ + L D + LP G G LS +R+R+ IA L+ +P I+ DE TS
Sbjct: 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
LD++ + + V + + RT++ H+ S I A + ++LL +G
Sbjct: 186 LDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 332 DTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ +G+ SGG+++R+ L+ ++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 390 HILDVTMIV-----ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ T+I+ + + A + IILL++G+IV +G ++L+
Sbjct: 203 K--NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
+ VS R G + L+G SG+GKTT++ ++AG R T G + G +++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R G QN ++TVY+++ + + + R V E++ + L+S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 6e-09
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 929
+D Q+L +S +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 930 GYP---KNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLS-SDVDTKKRKMFV 982
G P + E + G+ Q+ + T+ E+L Y + D+ F
Sbjct: 63 GQPIDNISLENWRSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 983 DE-VMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
V + + L ++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 119 RSFVENMPDQL----NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 174 SESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL+D+S +P+ + GP G GK+T+ L R +G+IT G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNI 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++SQ + G T+RE L Y G++ D
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG--TIRENL-----------TY-------------GLEGD 103
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGE 355
+ + + +A + + + +T VG+ RG+ SGGQ++R+
Sbjct: 104 YTDEDLWQVLDLAF-----ARSF---VENMPDQLNTEVGE---RGVKISGGQRQRLAIAR 152
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDL 410
+ +L +DE + LDS + + K L ++ T +V + + A
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA------ 204
Query: 411 FDDIILLSEGQIVYQG 426
D I + +GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARV 941
L +V+ G ++G SGAGKTT M ++AG G++ V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLIV 77
Query: 942 SGYCEQNDIHS--------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
E I P +T +E++ + S + +KR V+EV +++++
Sbjct: 78 PP--EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHH 132
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ + P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 133 VLNHF---P--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 64/229 (27%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHELNE 240
V L +V+ ++ +LGP GAGKTT M +AG L +G++ + +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-----LDVPSTGELYFDDRLVAS 71
Query: 241 ----FVP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
VP R + Q + +T E + F + +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKM------------- 112
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
EI ++ VA KIL + V + R +SG Q+
Sbjct: 113 -------SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQ 146
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+RV LV ++L +DE + LD+ +K++ L VT++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 70/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 69
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ + G T++E + F G Y+ R + I A
Sbjct: 70 RISFCSQFSWIMPG--TIKENIIF-------GVSYD-----EYRYRSV-------IKA-- 106
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 107 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 149
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 201
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 202 LHEGSSYFYGTFSELQN 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 941 VSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLND 996
+S +C Q ++ T+ E++++ D + + V + +L E + +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIFG------VSYDEYRYRS-VIKACQLEEDISKFAE 118
Query: 997 ---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++G G++ LS QR R+++A + + + +D P LD + + +
Sbjct: 119 KDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+T + + ++ + D++L+L G + G
Sbjct: 178 MANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 82/289 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
L ++ + + ++G G GK++L+ AL ++ K G + G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------- 66
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ AY+ Q + + ++RE + F G + E + I A
Sbjct: 67 SVAYVPQQAWIQND--SLRENILF-------GCQLE-----EPYYRSV-------IQA-- 103
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
+L+ D L+IL D T +G+ +G+ SGGQK+RV+ + A
Sbjct: 104 ---------CALLPD--LEILPSGD---RTEIGE---KGVNLSGGQKQRVSLARAVYSNA 146
Query: 362 NVLYMDEISTGLDSST---TFQIC----KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
++ D+ + +D+ F+ LK IL VT ++ L D I
Sbjct: 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQV-------DVI 198
Query: 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQ 463
I++S G+I G +L A+FL+ S
Sbjct: 199 IVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 50/224 (22%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L+ ++ G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD-----TKKRKMFVDEVME---LVE-L 991
V+ Y Q AW++ S + + + + V++ L+ L
Sbjct: 68 VA-YVPQ----------------QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110
Query: 992 KSLND---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L + +G GV+ LS Q++R+++A + +N I D+P S +DA +
Sbjct: 111 EILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1049 V--RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V + +T + H + D ++++ GG++ G
Sbjct: 170 VIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 71/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 99
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ+ + G T++E + +G Y+ R + I A
Sbjct: 100 RISFCSQNSWIMPG--TIKENI--------IGVSYD-----EYRYRSV-------IKA-- 135
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 136 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 178
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 230
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 231 LHEGSSYFYGTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 9e-07
Identities = 46/218 (21%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 941 VSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLND 996
+S +C Q + ++ T+ E+++ ++ D + + V + +L E + +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEYRYRS-VIKACQLEEDISKFAE 147
Query: 997 ---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++G G++ LS QR R+++A + + + +D P LD + + +
Sbjct: 148 KDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+T + + ++ + D++L+L G + G
Sbjct: 207 MANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L+ +S PG + ++G SG GKTTL+ LAG + G I I N
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 940 RVSGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R GY Q V TVY ++ Y ++R ++ ++EL + L
Sbjct: 80 RRLGYLVQE-----GVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLELTGISEL 131
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
P LS Q++R +A L +P +I +DEP S LD +
Sbjct: 132 AGRY---P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D++VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-ARE 574
Query: 1056 GRTVVCTIHQPS 1067
GRT + H+ S
Sbjct: 575 GRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIK---IS 929
+L +S + G AL+G SG GK+T++ D +AG ++G +IK +
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKEIKQLNVQ 1103
Query: 930 GYPKN-----QET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
QE F ++ E++ Y R+ S
Sbjct: 1104 WLRAQLGIVSQEPILFDC---------------SIAENIAYGDNSRVVSY---------- 1138
Query: 983 DEVMELVEL-------KSLN---DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+E++ + SL ++ VG G LS Q++R+ IA LV P I+ +DE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
TS LD + +V + + GRT + H
Sbjct: 1198 ATSALDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 38/134 (28%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ +K + V ++ L+G GAGKTT + A+AG + GKI + G ++
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPA 75
Query: 244 QRTCAYISQHDLHH--------GEMTVRETLDFSGRCLGVGTR-------------YEL- 281
I++ + E+TV E L +G R + L
Sbjct: 76 HV----INRMGIALVPEGRRIFPELTVYENLM-----MGAYNRKDKEGIKRDLEWIFSLF 126
Query: 282 --LAELSRREKQAG 293
L E R ++ G
Sbjct: 127 PRLKE--RLKQLGG 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-06
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
V + + + G + L+G +GAGKTT + +AG R G I I+
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 932 PKNQETFARVS-GYCEQNDIHSP-------YVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
P G P +TVYE+L+ A+ R D + K ++
Sbjct: 74 P----AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLE 120
Query: 984 EVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
+ L LK + G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1043 AIVMRTVRNTVDTGRTV 1059
+ V ++ G T+
Sbjct: 176 SEVFEVIQKINQEGTTI 192
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91
Query: 928 ISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
++ +++ T AR G Q N + S TV+ ++ L L + + K V E
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDEVKRRVTE 146
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
++ LV L +DS P S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 147 LLSLVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-------M 396
SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T M
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
V + D + ++S G+++ Q V E F H P+ F+Q
Sbjct: 225 DVV--------KRICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFR 467
E Y R
Sbjct: 269 HLDIPEDYQER 279
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSP 953
++G +GAGKT ++++AG G I ++ + + QN
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----HDIAFVYQN----- 80
Query: 954 YV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
Y V ++L + +R+ + KR V + ++++ L D LS
Sbjct: 81 YSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRNP-----LTLS 129
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+++R+ +A LV NP I+ +DEP S LD R
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 40/200 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L ++S PG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 943 GYCEQNDIHSPYVTVY-----------ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
S +T+ + ++S R + D + + +V + V L
Sbjct: 83 ------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 992 KSLNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+S+ + G + G LS ++ + +A +++ I+ +DEP++ LD I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1046 MRTVRNTVDTGRTVVCTIHQ 1065
RT++ TV+ +
Sbjct: 195 RRTLKQAF-ADCTVILCEAR 213
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 71/219 (32%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
Q+L ++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 934 ---------------NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
QE F R + E++ Y
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG-----------L 117
Query: 977 KRKMFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026
R ++E+ + D+ VG G LS QR+ + +A L+ P
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPR 176
Query: 1027 IIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1064
++ +D TS LDA V R + + RTV+
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG----D 925
++ +L ++ G A +G+SG GK+TL+ DV +G+ I+G D
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGHNIKD 407
Query: 926 IKISGYPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRK 979
Q+ S TV E++L R + +D
Sbjct: 408 FLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATD------- 444
Query: 980 MFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029
+EV+E ++ L D+ VG GV LS Q++RL+IA + NP I+
Sbjct: 445 ---EEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1030 MDEPTSGLDAR 1040
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 6e-07
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQET--- 937
L +++ G AL+G SG+GK+T+ ++ T Y EG I + G+ + T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLAS 414
Query: 938 ----FARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKK--RKMFVDE-V 985
A VS Q ND TV ++ Y A S ++ R + + +
Sbjct: 415 LRNQVALVS----QNVHLFND------TVANNIAY-ARTEEYSREQIEEAARMAYAMDFI 463
Query: 986 MELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
++ L D+++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKMDNGL----DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 36/175 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQET--- 937
L VS G AL+G SG+GK+T+ ++ T Y G I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 938 ----FARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDE-VM 986
FA VS Q ND T+ ++ Y+A + ++ R+ E +
Sbjct: 415 LRRHFALVS----QNVHLFND------TIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464
Query: 987 ELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ + L D+++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 465 NMPQGL----DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 14/153 (9%)
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
++ +A ++ + + E+V N + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 1004 VSG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS +R L +A L S++ +DEPT LD ++ +
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ V+ H ++ +A D ++ +
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLEN 330
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG+GK+TL+ +AG G I V ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDE--------KDV------TELPPKDRN 76
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVY+++ + LR + + K+ V EV +++ + L +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKLLNRY--- 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 131 P--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + ++AG + EG I V +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGD--------RDV------TYLPPKDRN 84
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVYE++ + ++ + KR V EL++++ L +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEELLNRY--- 138
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 139 PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + +LAG G+I V NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDD--------VLV------NDIPPKYRE 76
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TV+E++ + R S + +KR V E+ + + +L D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIARKLLIDNLLDR---K 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 131 PT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + ++AG + G I I V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD--------KLVADPEKGIFVPPKDRD 82
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVY+++ + LR + +R V EV EL+ L L +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNRK--- 136
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 137 PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1072
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1073 AFDELLLL-----KRGGRVI 1087
A D ++ + V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKN---Q 935
+L V+ V G + ALMG +GAGK+TL +LAG Y G+I + G +N
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDG--ENILEL 72
Query: 936 ETFARV-SG--YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
R G Q + P VT+ L + +L +V + V + +EL++
Sbjct: 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 993 ------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
LN+ G S ++KR I LV P+ +DE SGLD A +V
Sbjct: 133 ESYLSRYLNE---------GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 1047 RTV 1049
R V
Sbjct: 184 RGV 186
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 10/114 (8%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALA-----GK--LGKDLRASGKITYCGHELN-EF 241
+ +V + L+ P GAGK+ L L LA G L +G + Y E
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 82
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGI 294
+ R A + + L L E L R + +
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRL 136
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 245 RTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
R Y I GV ++ L L+ G
Sbjct: 94 RAGEGIFMAFQYPVEIP----------------------GVSNQFFLQTALNAVRSYRGQ 131
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
+ D F + + +L + + ++ + G SGG+KKR
Sbjct: 132 ETLDRFD-FQDLMEEK-----------IALLKMP---EDLLTRSVNVGFSGGEKKRNDIL 176
Query: 355 EMLVGTANVLYMDEISTGLD 374
+M V + +DE +GLD
Sbjct: 177 QMAVLEPELCILDESDSGLD 196
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 6e-04
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 66/208 (31%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGD-IKISGYPK 933
+L ++ +PG AL+G +G+GKTT++ DV G I D I I +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGIDIRKIKR 424
Query: 934 N----------QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFV 982
+ Q+T S TV E+L Y +D
Sbjct: 425 SSLRSSIGIVLQDTILF-ST------------TVKENLKYG---NPGATD---------- 458
Query: 983 DEVMELVELKSLNDSMVGLPG---------VSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033
+E+ E +L + + LP LS QR+ L I +ANP I+ +DE
Sbjct: 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518
Query: 1034 TSGLDARAAAIV---MRTVRNTVDTGRT 1058
TS +D + + M + G+T
Sbjct: 519 TSNVDTKTEKSIQAAMWKLM----EGKT 542
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1119 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.85 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.83 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.8 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.73 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.73 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.71 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.7 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.7 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.69 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.68 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.68 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.66 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.65 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.65 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.64 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.63 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.63 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.6 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.6 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.59 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.58 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.56 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.55 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.54 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.54 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.53 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.52 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.52 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.52 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.51 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.5 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.49 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.47 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.46 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.45 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.45 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.44 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.44 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.43 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.42 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.41 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.4 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.4 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.39 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.38 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.36 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.32 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.32 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.31 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.3 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.29 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.29 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.29 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.29 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.28 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.26 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.26 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.24 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.22 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.21 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.2 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.19 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.19 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.19 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.18 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.18 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.18 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.18 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.17 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.17 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.17 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.15 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.13 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.12 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.12 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.11 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.1 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.1 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.1 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.09 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.08 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.07 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.06 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.06 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.03 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.0 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.99 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.99 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.99 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.97 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.96 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.95 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.92 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.9 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.89 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.87 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.86 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.83 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.82 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.82 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.8 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.79 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.78 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.77 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.77 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.76 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.74 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.7 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.7 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.69 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.67 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.61 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.61 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.6 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.6 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.59 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.58 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.57 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.54 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.53 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.48 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.47 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.46 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.45 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.45 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.44 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.41 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.39 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.39 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.36 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.35 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.34 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.3 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.3 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.26 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.25 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.22 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.2 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.18 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.08 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.08 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.08 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.02 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.01 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.99 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.97 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.95 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.94 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.92 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.91 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.9 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.87 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.87 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.83 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.82 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.82 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.79 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.72 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.71 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.7 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.67 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.66 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.65 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.61 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.61 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.58 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.57 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.56 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.54 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.52 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.51 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.44 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.42 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.41 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.41 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.41 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.4 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.4 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.39 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.38 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.37 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.36 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.35 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.35 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.3 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.3 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.27 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.26 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.26 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.25 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.23 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.22 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.22 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.2 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.17 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.11 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.1 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.09 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.07 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.07 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.04 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.04 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.0 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.97 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.97 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.96 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.93 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.91 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.91 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.89 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.87 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.84 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.79 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.76 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.76 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.74 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.72 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.71 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.69 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.68 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.66 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.63 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.63 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.59 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.57 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.57 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.56 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.55 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.54 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.5 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.5 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.46 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.45 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.41 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.38 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.32 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.28 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.27 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.26 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.25 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.25 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.24 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.23 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.22 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.22 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.16 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.15 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.13 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.08 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.07 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.04 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.03 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.01 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.0 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.93 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.92 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.88 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.87 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.84 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.84 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.83 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.82 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.82 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.81 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.81 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.79 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.78 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.76 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.74 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.73 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.72 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.71 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.66 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.66 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.65 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.6 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.6 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.53 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.51 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.5 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.49 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.46 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.46 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.45 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.45 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.44 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.41 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.4 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.39 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.36 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.35 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.23 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.21 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.2 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.2 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.19 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.19 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.18 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.1 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.06 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.03 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.01 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.0 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.97 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.96 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.94 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.9 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.86 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.84 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.83 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.78 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.76 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.71 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.7 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.69 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.6 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.59 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.55 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.54 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.54 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.54 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.53 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.44 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.41 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.39 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 94.38 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.34 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.32 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 94.31 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.31 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=773.97 Aligned_cols=216 Identities=25% Similarity=0.362 Sum_probs=181.7
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+||+|.|+.. ....+|+||||+|+|||++||||+||||||||+++|+|..+ +.+|+|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEE
Confidence 468999999887532 12459999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
+.. ..+|+.++||||+|.++.. |++||+.|+.. +.+ ..++.++++++..++.+. .|..+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~----~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS----VTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT----SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC----CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 754 5678899999999999875 99999977521 111 234558889998887554 34455544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|++|+
T Consensus 1215 -G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS- 1289 (1321)
T ss_dssp -SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-
T ss_pred -CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 5899999999975 677899999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|+|++.|+..
T Consensus 1290 ~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1290 NGTIIEKGTHT 1300 (1321)
T ss_dssp SSSEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 58999999854
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-68 Score=701.91 Aligned_cols=216 Identities=24% Similarity=0.341 Sum_probs=173.5
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++.. +...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 1029 g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSC
T ss_pred CcEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEE
Confidence 468999998876421 12358999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
+.. ..+++.+||+||++.+++ .||+||+.++...+ ... ++.++++++..++.+. .|..+|..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 753 456778999999997764 69999998753211 111 2234555666555433 33444543
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+++|+||+|||||||||+.+++.|++.|++.. +|+|||+|+||++ ....||++++|+
T Consensus 1169 -G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~--~i~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 -GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS--TIQNADLIVVIQ- 1243 (1284)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT--GGGSCSEEEEEE-
T ss_pred -CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH--HHHcCCEEEEEE-
Confidence 45799999999999999999999999999999999999999999998864 5999999999986 346799999997
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 1244 ~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 NGKVKEHGTHQ 1254 (1284)
T ss_dssp TBEEEEEECHH
T ss_pred CCEEEEECCHH
Confidence 48999999854
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=565.35 Aligned_cols=188 Identities=27% Similarity=0.322 Sum_probs=157.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|++...+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 6899999999999999999999999999999999865 34677765 24599999998877889999988
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
....... ....+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011245788999999988888774 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1042 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
+..++++|++++ +.|.|||++|||++ .+...||++++|.. .|++...|+...
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999975 46678999999973 266777888754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-58 Score=556.68 Aligned_cols=188 Identities=27% Similarity=0.328 Sum_probs=156.5
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ ...+||++|++...+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 6899999999999999999999999999999999865 34687764 23599999998877889998887
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
........ ...+.+.++++.+++.+..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01235678899999987777764 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1042 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
+..|+++|++++ +.|.|||++|||++ .+...||++++|.+ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999986 45999999999975 56678999999974 267777888754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-57 Score=542.93 Aligned_cols=199 Identities=23% Similarity=0.251 Sum_probs=159.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+++ +.++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC---------eeeEeechhcccccCCCHHHHH
Confidence 5778899999999999999999999999999999876 3579998765 3489999998777789999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.+.... .... ....++++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKD--ALST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSS--TTCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhh--ccch----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 763211 1001 1234678899999988888774 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecC-cEEEEecCCCCChHHHHHHh
Q 001228 1042 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG-GRVIYAGPLGHESHKLIEYF 1103 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g-G~v~~~g~~~~~~~~l~~~f 1103 (1119)
+..|+++|+++++ .|.|||+||||++ .+...||++++|..+ |.....++.......+.+++
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~ 483 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFL 483 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHH
Confidence 9999999999974 5899999999975 566789999999741 34444555443333444554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=550.50 Aligned_cols=184 Identities=22% Similarity=0.286 Sum_probs=149.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC-CCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 262 (1119)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. .+++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12378999974 67888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 341 (1119)
.|++.+ ...+ . ...++.+++.+||. +..+..+++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999965 1110 0 01245688999995 678888887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ .+.|+|++.| ...++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-CHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999987 3677777655 4568889999999999999
Q ss_pred EE-EEcChhHHH
Q 001228 422 IV-YQGPRDNVL 432 (1119)
Q Consensus 422 iv-~~G~~~~~~ 432 (1119)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 96 789887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=550.66 Aligned_cols=215 Identities=23% Similarity=0.269 Sum_probs=139.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCcCCCC----CcceEEEECCcc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDL----RASGKITYCGHE 237 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~LaG~~~~~~----~~~G~I~~~G~~ 237 (1119)
..++|+|||++|++|++++|+||||||||||| +.+.|...|+. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34589999999999999999999999999998 77777776642 125677777765
Q ss_pred CCCCcccceEEEeccCCCC-------------------CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCCh
Q 001228 238 LNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (1119)
Q Consensus 238 ~~~~~~~~~~~yv~Q~d~~-------------------~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1119)
.... +++.++||+|...+ ++.+||+||+.|....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4332 23445666654332 4578999999874321100 000000
Q ss_pred hHHHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCH
Q 001228 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (1119)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs 375 (1119)
.+... .+... .-.+++.+||.+. .|+.+++ |||||||||+||+||+.+|+ +|||||||+|||+
T Consensus 172 -~~~~~-------~~~~~-~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRD-RLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHH-HHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 00011 1235888999865 6888887 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 376 ~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
.++.++.+.|+++++ .|.|+|++.|... ....||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999975 4788888777643 45679999999 899999999988763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-55 Score=534.61 Aligned_cols=189 Identities=21% Similarity=0.210 Sum_probs=154.7
Q ss_pred eeeccceeeeeCC-----cEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 881 QLLHSVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 881 ~vL~~vs~~i~~G-----e~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
.+++++||++++| |++||+||||||||||+++|+|...+ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788899988888 78999999999999999999998663 35541 11 23589999997776778
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+|++... ++.. .. ....++++++.+++.+..++.+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~--~~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHH--hhcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 999987532 2211 11 1234678999999998888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEec-CcEEEEecCCCC
Q 001228 1036 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGH 1094 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~v~~~g~~~~ 1094 (1119)
|||+.++..++++|+++. +.|.|||++|||++ .+...||++++|.. .|+++..|++.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 999999999999999986 45999999999975 56678999999974 278889998765
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=429.46 Aligned_cols=196 Identities=27% Similarity=0.382 Sum_probs=145.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHH---------HhHcCCCC--C--CeeE------EEEEECCccCChhh-----
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYIE------GDIKISGYPKNQET----- 937 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl---------~~L~g~~~--~--g~~~------G~i~i~g~~~~~~~----- 937 (1119)
.|+|||++|++|++++|+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 33333211 1 1122 33555554431100
Q ss_pred ---------------------------------------hcceEEEEccCCCCCC-------------------------
Q 001228 938 ---------------------------------------FARVSGYCEQNDIHSP------------------------- 953 (1119)
Q Consensus 938 ---------------------------------------~~~~~gy~~q~~~~~~------------------------- 953 (1119)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012466766655544
Q ss_pred -------CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 954 -------~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
.+||.|++.|.... .....+.++|+.++|.... ++. +.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccCC-----ccCCCHHHHHHHHHHHHHhhCC
Confidence 36788887764311 1223467889999996532 333 4579999999999999999876
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.+.+.|++.|++++++|.|||+|+|++ +....||++++|. ++|+|++.|+..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 79999999999999999999999999998899999999996 4567799999993 579999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=391.17 Aligned_cols=219 Identities=24% Similarity=0.307 Sum_probs=187.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. .+...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 47888888765421 123569999999999999999999999999999999999876 4589999999986
Q ss_pred Ch---h---hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 NQ---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~~---~---~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. . ..++.+||++|++.+++.+||+||+.|+...+. ....+..+.+.++++.++|.+..++. +.+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSY-----PSNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 43 1 235679999999999999999999999876542 34556667899999999999888877 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|.|||+|||+++ .+...||++++|.+ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999975 46678999999975 899
Q ss_pred EEecCCC
Q 001228 1087 IYAGPLG 1093 (1119)
Q Consensus 1087 ~~~g~~~ 1093 (1119)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999853
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-42 Score=370.85 Aligned_cols=220 Identities=24% Similarity=0.366 Sum_probs=181.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++.. .....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcc
Confidence 4667777655311 112469999999999999999999999999999999999876 45899999998764
Q ss_pred hh---h----hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCC
Q 001228 935 QE---T----FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~~---~----~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~ 1006 (1119)
.. . .++.+||++|++.+++.+||+||+.++...+........+..+.+.++++.+++.+. .++. +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 31 1 134599999999999999999999997654422233445556778899999999764 3655 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ +...||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999974 5678999999975 89
Q ss_pred EEEecCCC
Q 001228 1086 VIYAGPLG 1093 (1119)
Q Consensus 1086 v~~~g~~~ 1093 (1119)
++..++..
T Consensus 223 i~~~~~~~ 230 (235)
T 3tif_A 223 VEREEKLR 230 (235)
T ss_dssp EEEEEECC
T ss_pred EEEEcChh
Confidence 99888764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=419.75 Aligned_cols=196 Identities=29% Similarity=0.371 Sum_probs=149.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc-C-C--------CCCC---eeEE------EEEECCccCChh------
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-G-R--------KTGG---YIEG------DIKISGYPKNQE------ 936 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~-g-~--------~~~g---~~~G------~i~i~g~~~~~~------ 936 (1119)
+|+||||+|++||++||+|+||||||||+++|+ | . ...| .+.| .|.++|.++...
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999864 2 0 1122 2334 588888775210
Q ss_pred ----------------hhcceEEEEccCCCCC----------------------C-------------------------
Q 001228 937 ----------------TFARVSGYCEQNDIHS----------------------P------------------------- 953 (1119)
Q Consensus 937 ----------------~~~~~~gy~~q~~~~~----------------------~------------------------- 953 (1119)
...+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 0123457877753221 0
Q ss_pred -------CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001228 954 -------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1119)
Q Consensus 954 -------~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 1025 (1119)
.+|+.|++.|... .. ....+.++++.++|.. ..++. +.+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 11 1123568899999986 45555 3479999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1026 ---~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
+||||||||+|||+.+...+++.|++++++|.|||+++|+++ ....||++++|. ++|++++.|+..
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999964 457899999994 468999988753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=377.17 Aligned_cols=217 Identities=25% Similarity=0.373 Sum_probs=183.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~l~i~~ls~~y~------------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS------------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT------------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC------------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEEC
Confidence 367778776542 12359999999999999999999999999999999999876 4589999999887
Q ss_pred C--h---hhhcceEEEEccCCC-CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 934 N--Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 934 ~--~---~~~~~~~gy~~q~~~-~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
. . ..+++.+||++|++. .++.+||+||+.|+.... ....++..+.++++++.++|.++.++.+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 235678999999973 445789999999986543 2344556677899999999998888874 479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. ++|+|||++||+++ .+...||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999986 46678999999975 899
Q ss_pred EEecCCCC
Q 001228 1087 IYAGPLGH 1094 (1119)
Q Consensus 1087 ~~~g~~~~ 1094 (1119)
++.|+..+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998653
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=383.37 Aligned_cols=207 Identities=25% Similarity=0.322 Sum_probs=182.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc------cceEEEeccCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1119)
..++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 357999999999999999999999999999999999999997 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|+.+..+... . +....++++|+.+||++..+..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999765433210 0 012246778999999999999988
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.+..|.|+|++.|+ ..++.++||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999987778888887765 4588899999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++++|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=372.45 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=180.9
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 25 l~i~~l~~~y-------------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~ 89 (263)
T 2olj_A 25 IDVHQLKKSF-------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK 89 (263)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS
T ss_pred EEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 6777777544 33569999999999999999999999999999999999876 45899999998763
Q ss_pred -----hhhhcceEEEEccCCCCCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 -----QETFARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 -----~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
...+++.+||++|++.+++.+||+||+.|+. ..+ ........+.++++++.++|.+..++.+ .+||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 161 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLS 161 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 1234567999999999999999999999864 222 1223344567889999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~ 1088 (1119)
||||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||++||+++ .+...||++++|++ |++++
T Consensus 162 gGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 239 (263)
T 2olj_A 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIE 239 (263)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 45668999999975 79998
Q ss_pred ecCC
Q 001228 1089 AGPL 1092 (1119)
Q Consensus 1089 ~g~~ 1092 (1119)
.|+.
T Consensus 240 ~g~~ 243 (263)
T 2olj_A 240 EGKP 243 (263)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8874
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=364.54 Aligned_cols=211 Identities=23% Similarity=0.311 Sum_probs=179.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~y-------------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVI-------------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEeEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 5667766543 33569999999999999999999999999999999999876 45899999998764
Q ss_pred hh------hhc-ceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC
Q 001228 935 QE------TFA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~------~~~-~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 1007 (1119)
.. .++ +.+||++|++.+++.+||+||+.++...+. .......+.++++++.+++.+..++.+ .+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 569999999999999999999998765432 223344567889999999998887764 479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ....||++++|.+ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--LAELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--HHTTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999964 3478999999975 8999
Q ss_pred EecC
Q 001228 1088 YAGP 1091 (1119)
Q Consensus 1088 ~~g~ 1091 (1119)
+.|+
T Consensus 219 ~~g~ 222 (224)
T 2pcj_A 219 GEIT 222 (224)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=388.34 Aligned_cols=205 Identities=27% Similarity=0.366 Sum_probs=180.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~ 955 (1119)
|++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++|.+
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTS
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCC
Confidence 345679999999999999999999999999999999999876 4589999999886432 2346799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||
T Consensus 91 tV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 91 SVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp CHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 99999999876542 345566678999999999999888874 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+..
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 99999999999999999755 999999999975 57788999999975 8999999754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=372.76 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=181.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 7 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcc
Confidence 5677776543 33569999999999999999999999999999999999876 45899999998764
Q ss_pred h----------------hhhcceEEEEccCCCCCCCCCHHHHHHHHH-HhhcCCCccHHHHHHHHHHHHHHcCCCCc-cc
Q 001228 935 Q----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSL-ND 996 (1119)
Q Consensus 935 ~----------------~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~ 996 (1119)
. ..+++.+||++|++.+++.+||+||+.++. ..+ ........+.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 124567999999999999999999999864 322 12233445678899999999887 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 997 ~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
+.+ .+||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ .+...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 764 479999999999999999999999999999999999999999999999877999999999975 46668999
Q ss_pred EeEEecCcEEEEecCCC
Q 001228 1077 LLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|.+ |++++.|+..
T Consensus 223 v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999975 8999888753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=387.27 Aligned_cols=205 Identities=26% Similarity=0.412 Sum_probs=177.7
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC----Ch-hhhcceEEEEccCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----NQ-ETFARVSGYCEQNDIH 951 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~----~~-~~~~~~~gy~~q~~~~ 951 (1119)
|++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++ .. ...++.+||++|++.+
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEEEeCCCcC
Confidence 345679999999999999999999999999999999999876 4589999999875 22 2345779999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+|.+||+||+.|+...+. ...++.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||
T Consensus 92 ~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp CTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999999999999764432 233455667899999999999888874 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||||+..+..+++.|+++. +.|.|||++|||++ +....||++++|++ |+++..|+..
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999888764 56999999999975 57778999999975 8999999864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=368.74 Aligned_cols=215 Identities=21% Similarity=0.311 Sum_probs=181.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 15 ~l~i~~l~~~y-------------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEE-------------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 36777776544 33569999999999999999999999999999999999876 4589999999876
Q ss_pred Ch--hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH
Q 001228 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1119)
Q Consensus 934 ~~--~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq 1011 (1119)
.. ...++.+||++|++.+++.+||+||+.+...++. ....+..+.++++++.++|.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998754432 223334456889999999998887764 4799999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1012 rqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
|||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999974 35556999999975 78998887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=380.46 Aligned_cols=207 Identities=22% Similarity=0.339 Sum_probs=179.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC----CCCc-ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL----NEFV-PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 258 (1119)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 56999999999999999999999999999999999999997 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||+||+.|+.+..+... . +....++++++.+||++..|..+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~--------------------~--------------~~~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT--------------------A--------------QERQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS--------------------H--------------HHHHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh--------------------H--------------HHHHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999765432110 0 0122467789999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+..|.|+|+++| ...++..+||+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEEEE
Confidence 99999999999999999999999999999999999999999888887767788777665 4568999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=415.47 Aligned_cols=106 Identities=27% Similarity=0.389 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001228 980 MFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055 (1119)
Q Consensus 980 ~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~---p~illLDEPtsgLD~~~~~~i~~~l~~~~~~ 1055 (1119)
+.+.++++.++|... .++. +..|||||||||+||++|+.+ |+||||||||+|||+.+.+.|+++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357889999999764 3444 357999999999999999996 7999999999999999999999999999888
Q ss_pred CCeEEEEecCccHHHHHhhceEeEEe-----cCcEEEEecCC
Q 001228 1056 GRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1119)
Q Consensus 1056 g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~v~~~g~~ 1092 (1119)
|.|||+|+|+++ ....||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~--~i~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQ--VVAASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 999999999964 447899999995 46899998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=371.02 Aligned_cols=217 Identities=24% Similarity=0.287 Sum_probs=181.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 8 l~i~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~ 72 (257)
T 1g6h_A 8 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEeeeEEEE-------------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 6777776544 33569999999999999999999999999999999999876 45899999998764
Q ss_pred h----hhhcceEEEEccCCCCCCCCCHHHHHHHHHHh-hcCC---------CccHHHHHHHHHHHHHHcCCCCccccccC
Q 001228 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWL-RLSS---------DVDTKKRKMFVDEVMELVELKSLNDSMVG 1000 (1119)
Q Consensus 935 ~----~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1000 (1119)
. ...++.+||++|++.+++.+||+||+.++... +... ........+.++++++.++|.+..++.+
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 151 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA- 151 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-
Confidence 3 12345799999999888999999999886432 1110 0112334456889999999988887774
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|
T Consensus 152 ----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 152 ----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 479999999999999999999999999999999999999999999999877999999999986 466789999999
Q ss_pred ecCcEEEEecCCC
Q 001228 1081 KRGGRVIYAGPLG 1093 (1119)
Q Consensus 1081 ~~gG~v~~~g~~~ 1093 (1119)
.+ |++++.|+..
T Consensus 227 ~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 227 FN-GQIIAEGRGE 238 (257)
T ss_dssp ET-TEEEEEEESH
T ss_pred EC-CEEEEEeCHH
Confidence 75 7899888753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=381.39 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=182.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 56999999999999999999999999999999999999997 9999999999876544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+... . +....++++++.+||++..+..+.+
T Consensus 93 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------E------------------------VINQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhH-----
Confidence 999999866433110 0 1123467889999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+..|.|+|+++| ...++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998766888777655 55689999999999999999
Q ss_pred EEEcChhHHHH
Q 001228 423 VYQGPRDNVLE 433 (1119)
Q Consensus 423 v~~G~~~~~~~ 433 (1119)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=380.29 Aligned_cols=216 Identities=26% Similarity=0.380 Sum_probs=184.7
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ ++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 467777765431 33469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.. ...++.+||++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 2345779999999999999999999999865542 234455677899999999999888874 47999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999754 999999999975 56778999999975 89999887
Q ss_pred CC
Q 001228 1092 LG 1093 (1119)
Q Consensus 1092 ~~ 1093 (1119)
..
T Consensus 230 ~~ 231 (355)
T 1z47_A 230 PE 231 (355)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=359.89 Aligned_cols=207 Identities=21% Similarity=0.240 Sum_probs=174.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999997 9999999998866542 2359999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc-ccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMV 335 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~v 335 (1119)
++.+||+||+.|+......+.. ... +....+..+++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGE------------------------ERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHH------------------------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999987543211000 000 011235678899999875 48888
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|++.|++. +.++||+|+
T Consensus 144 ~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 NQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp GG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 77 99999999999999999999999999999999999999999999998766889988888764 458999999
Q ss_pred EEcCCeEEEEcChhHH
Q 001228 416 LLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (1119)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=371.46 Aligned_cols=224 Identities=24% Similarity=0.348 Sum_probs=187.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV-------------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEET
T ss_pred eEEEEeEEEEe-------------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 46777777644 34579999999999999999999999999999999999876 3589999999886
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G 1010 (1119)
.. ...++.++|++|++.+++.+||+||+.++..... .....+.++++++.+++.++.++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 3455679999999998889999999998754321 1223456889999999998888774 479999
Q ss_pred HHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1011 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1011 qrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
||||++|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++|||++ .+...||++++|.+
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999975 46678999999975
Q ss_pred cEEEEecCCCC--ChHHHHHHhh
Q 001228 1084 GRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1084 G~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|++++.|+..+ ....+.++|.
T Consensus 224 G~i~~~g~~~~~~~~~~l~~~~~ 246 (266)
T 4g1u_C 224 GKLVACGTPEEVLNAETLTQWYQ 246 (266)
T ss_dssp TEEEEEECHHHHCCHHHHHHHCC
T ss_pred CEEEEEcCHHHHhCcHHHHHHhC
Confidence 89999998653 3455777776
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=379.45 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=178.2
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~ 955 (1119)
+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++|.+
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 90 (362)
T 2it1_A 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHM 90 (362)
T ss_dssp SSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCC
Confidence 344579999999999999999999999999999999999876 4589999999886432 2346799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|++||||||||
T Consensus 91 tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 91 TVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp CHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999865432 234455667899999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999654 999999999975 56778999999975 8999988753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.70 Aligned_cols=207 Identities=27% Similarity=0.348 Sum_probs=175.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-----cccceEEEeccCC-CCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD-LHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 257 (1119)
..+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999987 99999999987421 1245799999986 344
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
..+||+||+.|+....+... . +....++++++.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------D------------------------EIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCCccc
Confidence 47899999999765432110 0 0122457789999999999999887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|++.|.. .++.++||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999733478888887765 4788899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|+++++|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=363.02 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=177.4
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 7 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 71 (240)
T 1ji0_A 7 LEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECC
Confidence 6777776544 33569999999999999999999999999999999999876 45899999998864
Q ss_pred h---hh-hcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-CCCccccccCCCCCCCCCH
Q 001228 935 Q---ET-FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLST 1009 (1119)
Q Consensus 935 ~---~~-~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~ 1009 (1119)
. .. .++.+||++|++.+++.+||+||+.++.... . ......+.++++++.++ +.+..++. +.+|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~--~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSg 142 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--K--DKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSG 142 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--C--CSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCH
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC--C--CHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCH
Confidence 3 12 2345999999999999999999998864211 1 11233456788999995 88777776 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1010 Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++...||++++|.+ |++++.
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~ 220 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999974 46678999999975 889888
Q ss_pred cCCC
Q 001228 1090 GPLG 1093 (1119)
Q Consensus 1090 g~~~ 1093 (1119)
|+..
T Consensus 221 g~~~ 224 (240)
T 1ji0_A 221 GKAS 224 (240)
T ss_dssp EEHH
T ss_pred cCHH
Confidence 8753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.78 Aligned_cols=204 Identities=26% Similarity=0.368 Sum_probs=176.5
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~t 956 (1119)
++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.+++.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 34569999999999999999999999999999999999876 4589999999886432 23567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
|+||+.|+...+ .....+.++.++++++.++|.++.++.+ .+||||||||++|||||+.+|++|||||||||
T Consensus 92 v~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 92 VFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 999999875432 2233344567899999999998888874 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1037 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999998754 999999999975 56778999999975 8999988754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=376.68 Aligned_cols=206 Identities=26% Similarity=0.405 Sum_probs=180.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..++|.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 105 ~eni~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------KD------------------------EMDARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999976543211 00 0122467789999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888777655 5688999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=361.52 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=176.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999999876543 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+....... .....++.+++.+||.+..+..+++
T Consensus 101 tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCCccc---
Confidence 9999999865422100 0112356789999999999988877
Q ss_pred CCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+. +|++|||||||+|||+.++.++.+.|+++++..+.|+|++.| ...++.++||+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtH-dl~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH-DLNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECS-CHHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEc-CHHHHHHhCCEE
Confidence 99999999999999999 999999999999999999999999999998765557666654 556888999999
Q ss_pred EEEcCCeEEEEcChhHHH
Q 001228 415 ILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1119)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=380.33 Aligned_cols=204 Identities=26% Similarity=0.353 Sum_probs=177.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcceEEEEccCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDI 950 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gy~~q~~~ 950 (1119)
++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 34569999999999999999999999999999999999876 458999999987532 123567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
++|.+||+||+.|+...+. ....+.++.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+||||
T Consensus 92 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999865542 234455667899999999998888874 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 164 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999999998754 999999999975 56778999999975 8999988754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=374.41 Aligned_cols=207 Identities=29% Similarity=0.377 Sum_probs=181.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999999865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999976543210 00 0122467789999999999999887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688899999999999999
Q ss_pred EEEcChhHHHH
Q 001228 423 VYQGPRDNVLE 433 (1119)
Q Consensus 423 v~~G~~~~~~~ 433 (1119)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998743
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=374.18 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=180.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------RE------------------------EIDKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999976543211 00 0122467789999999999998887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688999999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=380.04 Aligned_cols=200 Identities=27% Similarity=0.397 Sum_probs=175.1
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh------hhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 9999999999999999999999999999999999876 458999999987532 23457899999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+ .....+..+.++++++.++|.++.++.+ .+|||||||||+|||||+.+|+|||||||||
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s 169 (353)
T 1oxx_K 98 TAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (353)
T ss_dssp CHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999999875433 2334455667899999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 170 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999654 999999999975 56778999999975 8999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=379.08 Aligned_cols=214 Identities=22% Similarity=0.346 Sum_probs=176.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECC
Confidence 5677766543 34569999999999999999999999999999999999876 45899999998864
Q ss_pred hh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 935 QE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 935 ~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
.. ..++.+||++|++.+++.+||+||+.|+...+ .....+.++.++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23567999999999999999999999875332 2234455667899999999998888874 579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ +....+|++++|++ |+++..|+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999755 999999999975 56778999999975 899998875
Q ss_pred C
Q 001228 1093 G 1093 (1119)
Q Consensus 1093 ~ 1093 (1119)
.
T Consensus 227 ~ 227 (372)
T 1v43_A 227 T 227 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=352.74 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=172.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-------cceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999998865431 1569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|+....+.. +. +....++.+++.+||++..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------KK------------------------EAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999865432210 00 011235678999999999999888
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++ ++||++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEE
Confidence 7 9999999999999999999999999999999999999999999999775 78888887774 345 89999999
Q ss_pred EcCCeEEEEcCh
Q 001228 417 LSEGQIVYQGPR 428 (1119)
Q Consensus 417 L~~G~iv~~G~~ 428 (1119)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=375.25 Aligned_cols=201 Identities=24% Similarity=0.358 Sum_probs=178.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.+++.+||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999987 9999999998865433 467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+.+..+.. . . ..++++++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~----------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------D----------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------C----------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------H----------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975432110 0 0 2356789999999999999887 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987668888887765 468899999999999999999
Q ss_pred EcChhHHH
Q 001228 425 QGPRDNVL 432 (1119)
Q Consensus 425 ~G~~~~~~ 432 (1119)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=358.14 Aligned_cols=206 Identities=21% Similarity=0.331 Sum_probs=175.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCc---ccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 258 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999987 999999999874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 259 EMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
.+||+||+.|+. +..+.. .. +....++.+++.+||++..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------RE------------------------KAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999853 222110 00 0012356789999999989988887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|+ ..++.++||+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 7787777665 45788899999999
Q ss_pred cCCeEEEEcChhHHHH
Q 001228 418 SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1119)
++|++++.|+++++..
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988743
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=360.49 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=175.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC----------Cc------ccceE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------PQRTC 247 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~----------~~------~~~~~ 247 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999987 9999999998751 11 23569
Q ss_pred EEeccCCCCCCCCCHHHHHHHhh-hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC
Q 001228 248 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1119)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 326 (1119)
+||+|++.+++.+||+||+.|+. +..+.. .. +....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KH------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HH------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HH------------------------HHHHHHHHHHHHcC
Confidence 99999999999999999999853 222110 00 00123567899999
Q ss_pred Cccc-ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 327 L~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
|++. .+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|++.|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8888887 9999999999999999999999999999999999999999999999765 7888877665 45
Q ss_pred hHHhhcCeEEEEcCCeEEEEcChhHHH
Q 001228 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 406 ~~~~~~D~i~lL~~G~iv~~G~~~~~~ 432 (1119)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 788899999999999999999998874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=367.04 Aligned_cols=234 Identities=22% Similarity=0.362 Sum_probs=183.2
Q ss_pred cccCceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE
Q 001228 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928 (1119)
Q Consensus 849 ~~~~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i 928 (1119)
+..+..++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.+
T Consensus 16 ~~~~~~l~~~~l~~~y-------------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~ 80 (279)
T 2ihy_A 16 RGSHMLIQLDQIGRMK-------------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNL 80 (279)
T ss_dssp ---CEEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEE
T ss_pred CCCCceEEEEeEEEEE-------------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEE
Confidence 3333457888887654 23569999999999999999999999999999999999876 45899999
Q ss_pred CCccCC--h---hhhcceEEEEccCCCCC--CCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccC
Q 001228 929 SGYPKN--Q---ETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000 (1119)
Q Consensus 929 ~g~~~~--~---~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 1000 (1119)
+|.++. . ..+++.+||++|++.+. +.+||+||+.++...... ......+..+.++++++.++|.+..++.+
T Consensus 81 ~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 159 (279)
T 2ihy_A 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI- 159 (279)
T ss_dssp TTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-
Confidence 998764 2 33456799999987543 356999999875321000 00112233456889999999988887774
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCccHHHHHhhceEe
Q 001228 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1001 ~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~~l 1078 (1119)
.+|||||||||+|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|| |++||+++ ++...||+++
T Consensus 160 ----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~ 234 (279)
T 2ihy_A 160 ----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKIL 234 (279)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEE
Confidence 4799999999999999999999999999999999999999999999997669999 99999975 4557799999
Q ss_pred EEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1079 LLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1079 ~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
+|.+ |++++.|+..+ ....+.++|.
T Consensus 235 ~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 261 (279)
T 2ihy_A 235 LLKD-GQSIQQGAVEDILTSENMSRFFQ 261 (279)
T ss_dssp EEET-TEEEEEEEHHHHCSHHHHHHHHT
T ss_pred EEEC-CEEEEECCHHHHhccHHHHHHhC
Confidence 9975 89998887542 2334556664
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=373.82 Aligned_cols=206 Identities=28% Similarity=0.366 Sum_probs=180.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC------Cc-ccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------FV-PQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~------~~-~~~~~~yv~Q~d~~ 256 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999987 9999999988754 32 24679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|++||+||+.|+.+..+.. +. +....++++++.+||++..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------RQ------------------------EIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999976543211 00 011246778999999999999988
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999977667888887765 4688999999999
Q ss_pred EcCCeEEEEcChhHHH
Q 001228 417 LSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1119)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999999874
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=374.17 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=174.7
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~ 955 (1119)
|++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 11 y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 87 (348)
T 3d31_A 11 WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87 (348)
T ss_dssp CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTS
T ss_pred ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCC
Confidence 3445 9999999999999999999999999999999999876 458999999988643 23456799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
||+||+.|+...+... .. +.++++++.++|.++.++.+ .+||||||||++|||||+.+|++||||||||
T Consensus 88 tv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp CHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999986554221 11 56889999999999888874 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1036 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+.++..+++.|+++.+ .|.|||++|||++ +....+|++++|++ |+++..|+..
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999965 4999999999975 56778999999975 7899888753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=373.76 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=173.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|+..+++.+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865443 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 101 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------KD------------------------EIDKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975432210 00 0112467789999999999998887
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977667888887665 4688899999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=355.37 Aligned_cols=206 Identities=25% Similarity=0.305 Sum_probs=176.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875421 2357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.....+.. .. +....++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------SS------------------------EIEEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------HH------------------------HHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------hH------------------------HHHHHHHHHHHHCCCchHhcCChhh----
Confidence 999999865432110 00 0012356789999999999998887
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .+.|+|++.|++ .++..+||++++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 478888877654 57778899999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=358.55 Aligned_cols=219 Identities=26% Similarity=0.281 Sum_probs=171.8
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 4 l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASI-------------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEE-------------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 5667776544 335699999999999999999999999999999999997211257899999998764
Q ss_pred h---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC-CCccccccCCCCCCC-CC
Q 001228 935 Q---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSG-LS 1008 (1119)
Q Consensus 935 ~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~-LS 1008 (1119)
. ... ++.++|++|++.+++.+||+||+.+.............+..+.+.++++.+++ .++.++.+ .+ ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 3 122 33589999999999999999999886532111111223344568899999999 47777763 46 99
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~v~ 1087 (1119)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+... ||++++|.+ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999767999999999976 34444 599999975 8999
Q ss_pred EecCCC
Q 001228 1088 YAGPLG 1093 (1119)
Q Consensus 1088 ~~g~~~ 1093 (1119)
+.|+..
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 988754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=372.71 Aligned_cols=204 Identities=23% Similarity=0.323 Sum_probs=178.7
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC-----Cc-ccceEEEeccCCCCCCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FV-PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 259 (1119)
+|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .. .++.+|||+|+..+++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999987 9999999988754 22 34679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------KE------------------------EIRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChhh--
Confidence 99999999976543211 00 0112467789999999999999887
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999977667888887765 4688999999999999
Q ss_pred CeEEEEcChhHHH
Q 001228 420 GQIVYQGPRDNVL 432 (1119)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1119)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=357.50 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=175.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865422 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCC-CCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI-KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+||+.|+......+ .+. .+- .... .+.. +....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~----~~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLF----YKKWIPKEE--------------EMVEKAFKILEFLKLSHLYDRKAGE- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHH----HCSSCCCCH--------------HHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CcHHHHHHHHHhhhccC-ccc---ccc----cccccCCHH--------------HHHHHHHHHHHHcCCchhhCCCchh-
Confidence 99999999864320000 000 000 0000 0000 0112356789999999999999887
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|++.|+. .++.++||+|++|+
T Consensus 154 ----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 154 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMF 227 (257)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999765 78888877665 47788999999999
Q ss_pred CCeEEEEcChhH
Q 001228 419 EGQIVYQGPRDN 430 (1119)
Q Consensus 419 ~G~iv~~G~~~~ 430 (1119)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999888
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=362.01 Aligned_cols=200 Identities=26% Similarity=0.384 Sum_probs=169.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCC-CCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~-~~~~~~tv~ 958 (1119)
+.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 469999999999999999999999999999999999876 45899999998875434567799999996 456779999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsg 1036 (1119)
||+.++.... .. .....+.++++++.++|. +..++.+ .+||||||||++|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~-~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNF-YP---DRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTT-CT---TSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhc-CC---HHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864322 11 111234578899999998 7777764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999986 45567999999975 788888764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=355.05 Aligned_cols=196 Identities=23% Similarity=0.372 Sum_probs=168.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 59999999999 9999999999999999999999876 458999999987643 2235679999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.|+...+ . .....+.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864321 1 1122566889999999988887764 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
+++.+++.|++++++ |+|||++||+++ ++...||++++|.+ |++++.|+.
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999754 999999999975 46678999999975 899988874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=351.18 Aligned_cols=204 Identities=22% Similarity=0.341 Sum_probs=173.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1119)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865432 2359999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-CcccccccccCc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 338 (1119)
+||+||+.|+.... .. ..+ ....++.+++.++ |++..++.+++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~~~l~~~~~~~~~~- 139 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEG--------------IKRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSH--------------HHHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHH--------------HHHHHHHHHHHcccHhhHhcCChhh-
Confidence 99999998853111 00 000 0113456788884 88888888876
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||+|++|+
T Consensus 140 ----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999976 478888887664 47889999999999
Q ss_pred CCeEEEEcChhHHH
Q 001228 419 EGQIVYQGPRDNVL 432 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1119)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=350.76 Aligned_cols=202 Identities=21% Similarity=0.315 Sum_probs=174.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+|+|||+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+.+..+. . . ....++.+++.+||++..+..+++ ||
T Consensus 90 nl~~~~~~~~~----~------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----V------E--------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----H------H--------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----c------h--------------------------HHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 0 0 012356789999999988988887 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
|||||||+||+||+.+|+++||||||+|||+.++..+++.|+++++..+.|+|++.|+. .++..+||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765578888887654 57889999999999999999
Q ss_pred EcChhHHHH
Q 001228 425 QGPRDNVLE 433 (1119)
Q Consensus 425 ~G~~~~~~~ 433 (1119)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988743
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=357.75 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 467999999999885 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.|+..... . .++....+.+. ....++ .+++..+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~------------------~~~~~~~~~~~---------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----N------------------DEVEAAAQAAG---------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----H------------------HHHHHHHHHHT---------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----H------------------HHHHHHHHHhC---------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998643111 0 00111111110 011122 234566788875 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++.+ ++|+|++.|.. ..+. .||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 67888776654 3454 49999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.59 Aligned_cols=213 Identities=25% Similarity=0.338 Sum_probs=174.0
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++|+|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 51 ~~~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCE
Confidence 34689999987663 12469999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~ 1001 (1119)
++.. ..+++.+||++|++.+++ .||+||+.|+... .. .+.++++++.+++.+..+. .++.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 8753 346778999999998875 5999999876321 11 1235666777766544322 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++ ....||++++|+
T Consensus 187 ~-g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~ 262 (306)
T 3nh6_A 187 R-GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIK 262 (306)
T ss_dssp T-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEE
T ss_pred C-cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEE
Confidence 2 35799999999999999999999999999999999999999999999986 4799999999975 455699999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 263 ~-G~iv~~G~~~ 273 (306)
T 3nh6_A 263 D-GCIVERGRHE 273 (306)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999854
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=353.08 Aligned_cols=221 Identities=25% Similarity=0.295 Sum_probs=177.4
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ +++.+|+||||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 20 ~l~~~~l~~~y-------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSV-------------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEE-------------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 47888887654 23569999999999999999999999999999999999742225689999999875
Q ss_pred Ch---hhh-cceEEEEccCCCCCCCCCHHHHHHHHHH-hh---cCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCC
Q 001228 934 NQ---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAW-LR---LSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1119)
Q Consensus 934 ~~---~~~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~-l~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 1004 (1119)
.. ... ++.++|++|++.+++.+||.|++.+... .+ ........+..+.++++++.+++. .+.++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 32 222 2358999999999999999999987541 21 111122333456788999999996 46666532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHh-hceEeEEecC
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRG 1083 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~g 1083 (1119)
.+||||||||++|||||+.+|+||||||||+|||+.+++.+++.|+++.++|+|||++||+++ .+... ||++++|.+
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-
Confidence 149999999999999999999999999999999999999999999998767999999999975 23343 799999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 8999988753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=349.33 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=175.7
Q ss_pred eEEeccceeeeccccccccccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
++++|+++.+ + +..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.
T Consensus 5 l~i~~l~~~y-------------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~------ 63 (253)
T 2nq2_C 5 LSVENLGFYY-------------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE------ 63 (253)
T ss_dssp EEEEEEEEEE-------------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE------
T ss_pred EEEeeEEEEe-------------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE------
Confidence 5677766543 2 3569999999999999999999999999999999999876 3589997
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqr 1012 (1119)
.++.+||++|++.+++.+||+||+.++...... .........+.++++++.+++.+..++.+ .+||||||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 134 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQR 134 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHH
Confidence 235699999999998899999999886432211 00112233456889999999998877764 47999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ .+...||++++|.+ |+ ++.|+
T Consensus 135 qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~ 211 (253)
T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGE 211 (253)
T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCC
Confidence 9999999999999999999999999999999999999999876 999999999975 45678999999975 67 78776
Q ss_pred CCC--ChHHHHHHhh
Q 001228 1092 LGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1092 ~~~--~~~~l~~~f~ 1104 (1119)
..+ ....+.+.|.
T Consensus 212 ~~~~~~~~~~~~~~~ 226 (253)
T 2nq2_C 212 TRNILTSENLTALFH 226 (253)
T ss_dssp HHHHCCHHHHHHHHT
T ss_pred HHHHhCcHHHHHHhC
Confidence 432 2234555554
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=350.24 Aligned_cols=194 Identities=22% Similarity=0.348 Sum_probs=168.2
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.++. ...+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 8999999999999999999999999999999999876 46 99999998753 234556799999999988899999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------eEEEe
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS-------IIFMD 1031 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~-------illLD 1031 (1119)
||+.++.. . ... .+.++++++.+++.+..++.+ .+||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 99987521 1 111 345789999999988877764 4799999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||+|||+.++..+++.|+++.++|+|||++||+++ .+...||++++|.+ |++++.|+..
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999777999999999975 45578999999975 7898888753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=355.50 Aligned_cols=217 Identities=23% Similarity=0.294 Sum_probs=171.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. +...+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 47888887654210 11469999999999999999999999999999999999876 4589999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccH---HHHHHHHHHHHHHc--CCCCccccccCCCCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDT---KKRKMFVDEVMELV--ELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~ 1005 (1119)
.. ..+++.+||++|++.+++ .||+||+.|+... ...... ......+.++++.+ ++....++.+ .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 32 334567999999998877 5999999875321 111000 11122346677777 6766666653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
+||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++.+ .|+|||++||+++ ....||++++|.+ |
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G 232 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-G 232 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-T
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 7999999999999999999999999999999999999999999999864 4899999999964 4456999999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 233 ~i~~~g~~~ 241 (271)
T 2ixe_A 233 SVCEQGTHL 241 (271)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 899888753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=350.23 Aligned_cols=205 Identities=23% Similarity=0.378 Sum_probs=174.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC-CCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 262 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999998875322346799999995 56677999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc--ccccccccCccC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 340 (1119)
+||+.|+.... .. . .+....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~~--------------------~--------------~~~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------D--------------RDPVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------T--------------SCSHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-CC--------------------H--------------HHHHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864321 00 0 00112356789999999 888888877
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++..+||++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 78888887765 4677889999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=345.04 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=166.8
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.+ ++ .+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y-------------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGY-------------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEES-------------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEe-------------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEh
Confidence 46777776543 34 69999999999999999999999999999999999876 4589999999876
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
. ..++.++|++|++.+++.+||+||+.++...+.. .. . .+.++++++.+++.+. ++. +.+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKK-----LGELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHH
Confidence 4 3567799999999999999999999987544321 11 1 3457889999999877 665 3579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEE
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v 1086 (1119)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++ +|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~--~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY--STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG--BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe--CCcc
Confidence 999999999999999999999999999999999999999766899999999986 455566776654 3554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=347.37 Aligned_cols=211 Identities=25% Similarity=0.389 Sum_probs=171.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++ .+++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 7 ~~~~~~l~~~y~-----------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred ceeEEEEEEEeC-----------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 577888876542 013469999999999999999999999999999999999876 4589999999886
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLPG 1003 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~ 1003 (1119)
.. ..+++.+||++|++.+++ .||+||+.++.. ... .+.++++++.+++.++.++.+ +. .
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~ 142 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-Q 142 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-T
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-C
Confidence 43 335567999999998876 599999987521 111 234667788888866554432 11 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++. +|+|||++||+++ ....||++++|.+
T Consensus 143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~--~~~~~d~v~~l~~- 218 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 218 (247)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 46799999999999999999999999999999999999999999999995 5999999999976 3356999999975
Q ss_pred cEEEEecCC
Q 001228 1084 GRVIYAGPL 1092 (1119)
Q Consensus 1084 G~v~~~g~~ 1092 (1119)
|++++.|+.
T Consensus 219 G~i~~~g~~ 227 (247)
T 2ff7_A 219 GKIVEQGKH 227 (247)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
Confidence 789988874
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=339.24 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=161.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999987 9999999998865432 356999999998886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc-------cc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-------DT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 333 (1119)
||+||+.|+.. .. . . ..++.+++.+||.+.. ++
T Consensus 98 tv~enl~~~~~--~~-~-~------------------------------------~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM-S-V------------------------------------EKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC-C-H------------------------------------HHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC-C-H------------------------------------HHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 0 0112233444443322 23
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCE
Confidence 3332 234599999999999999999999999999999999999999999999984 3789888887754 44 56999
Q ss_pred EEEEcCCeEEEEcChhHHH
Q 001228 414 IILLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~ 432 (1119)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=348.25 Aligned_cols=208 Identities=26% Similarity=0.339 Sum_probs=170.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCc---ccceEEEeccCCCC--
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLH-- 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~---~~~~~~yv~Q~d~~-- 256 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++. ... .++.++||+|++.+
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999987 999999998875 322 23569999998754
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
.+.+||+||+.|+..... + .+. .+..+ ....++.+++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DIDDE--------------IRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHH--------------HHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCcHH--------------HHHHHHHHHHHcCChhHhcCChh
Confidence 235799999988532100 0 000 00000 11235678999999999999888
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEecCchhHHhhcCeE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM--IVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~--ii~~~q~~~~~~~~~D~i 414 (1119)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. ++|+ |++.|+. .++.++||+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 7 9999999999999999999999999999999999999999999999765 7888 7777664 5777899999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001228 415 ILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~ 431 (1119)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998876
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=346.05 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=168.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 45899999999999999999999999999999999999987 9999999998754322 356999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc--CCcccccccccCc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 338 (1119)
||+||+.|+..... . .+ ++.. +. ....++.+++.+ ||+...+..+++
T Consensus 108 tv~enl~~~~~~~~--~-~~---~~~~------------------~~------~~~~~~~~l~~l~~gl~~~~~~~~~~- 156 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--T-ME---EITA------------------VA------MESGAHDFISGFPQGYDTEVGETGNQ- 156 (271)
T ss_dssp BHHHHHHTTCSSCC--C-HH---HHHH------------------HH------HHHTCHHHHHHSTTGGGSBCCGGGTT-
T ss_pred cHHHHHhhhcccCC--h-HH---HHHH------------------HH------HHHhHHHHHHhhhcchhhhhcCCcCC-
Confidence 99999988632110 0 00 0000 00 001134567777 777777777666
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+..++|+|++.|++. .+ ..||+|++|+
T Consensus 157 ----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 157 ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLK 230 (271)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999886545788888877653 44 4599999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=338.26 Aligned_cols=197 Identities=19% Similarity=0.259 Sum_probs=167.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999987 999983 35699999999999899999
Q ss_pred HHHHHhhhhc-CCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 264 ETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
||+.|+.... +... .+..+ ....++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSH--------------DYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHH--------------HHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864211 0000 00000 012356789999999988888877
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999999775578888877654 57778999999999999
Q ss_pred EEEcChhHH
Q 001228 423 VYQGPRDNV 431 (1119)
Q Consensus 423 v~~G~~~~~ 431 (1119)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998876
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=345.66 Aligned_cols=198 Identities=27% Similarity=0.426 Sum_probs=164.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~t 956 (1119)
..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 469999999999999999999999999999999999876 458999999987643 234567999999998877 59
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
|+||+.++.. . ... ++.++++++.+++.++.++.. +. .+.+||||||||++|||||+.+|+|||
T Consensus 92 v~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~lll 162 (243)
T 1mv5_A 92 IRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILM 162 (243)
T ss_dssp HHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999987421 1 111 234678899999987765542 11 245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|||||+|||+.+++.+++.|+++. +|+|||++||+++ ....||++++|++ |++++.|+..
T Consensus 163 LDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~~ 222 (243)
T 1mv5_A 163 LDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN 222 (243)
T ss_dssp EECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred EECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999987 6999999999964 4456999999975 8898887653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=338.62 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=164.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|. ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 5665 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCC-cccccccc
Q 001228 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 335 (1119)
+.+||+||+.|.... .+.. ...+ +....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGVA-------------EFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCHH-------------HHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCHH-------------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999885421 1100 0000 001235678999999 47788777
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i 414 (1119)
++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++..+ ||+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEE
Confidence 53 3999999999999999999999999999999999999999999999864 478888887765 466667 5999
Q ss_pred EEEcCCeEEEEcChhH
Q 001228 415 ILLSEGQIVYQGPRDN 430 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~ 430 (1119)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=339.05 Aligned_cols=197 Identities=24% Similarity=0.342 Sum_probs=170.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1119)
++|+|+|+.+++|++++|+|||||||||||++|+|.++| . |+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999987 4 99999999875432 2356999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.. ... . ...++.+++.+||++..+..+++
T Consensus 90 v~e~l~~~~~-~~~---------------------~-----------------~~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT---------------------R-----------------TELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT---------------------C-----------------HHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC---------------------c-----------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 01246688999999988888876
Q ss_pred CCChHHHHHHHHHHHHhcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 342 GISGGQKKRVTTGEMLVGTAN-------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~-------illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++++. ++|+|++.|+ ..++..++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEE
Confidence 99999999999999999999 99999999999999999999999999765 7788777665 45777899999
Q ss_pred EEEcCCeEEEEcChhHH
Q 001228 415 ILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~ 431 (1119)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=337.71 Aligned_cols=220 Identities=22% Similarity=0.257 Sum_probs=172.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 454 8999999998765432 23499999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-cccccccc
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 336 (1119)
+.+||.|++.+...... . ..+. +.... .+....++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~--~~~~-~~~~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------S--YRGQ-ETLDR-----------FDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------H--GGGC-CCCCH-----------HHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------h--hhcc-ccCCH-----------HHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987431000 0 0000 00000 00112356789999996 56777765
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhh-cCeEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~i~ 415 (1119)
. .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .++|+|++.|++ .++..+ ||+++
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 1 2999999999999999999999999999999999999999999998854 377888877764 455565 89999
Q ss_pred EEcCCeEEEEcChhHHHHHHHhcCC
Q 001228 416 LLSEGQIVYQGPRDNVLEFFEHMGF 440 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~ 440 (1119)
+|++|++++.|+++++.. ++..||
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999988753 344444
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=339.34 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=165.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46899999999999999999999999999999999999987 999999999875432 3467999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccc------
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM------ 334 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 334 (1119)
||+||+.|+... .. . ...++.+++.+||.+..+..
T Consensus 91 tv~enl~~~~~~-~~-~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY-T-------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS-C-------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC-C-------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 0 01134456677776654433
Q ss_pred -ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 335 -VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 335 -vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 132 ~~~~-~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 132 EVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred hhcc-CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 332 245599999999999999999999999999999999999999999999986 3788888887753 44 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=339.97 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=168.3
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++.. ..+.+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 46888887655310 01359999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGLPG 1003 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~ 1003 (1119)
.. ..+++.+||++|++.+++ .||+||+.++.. ... .+.+.++++.+++.+..+ ...+. .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~ 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-K 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-S
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccC-C
Confidence 32 335667999999998876 599999987421 111 123566777777654322 11222 2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
+.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++. ...||++++|.+
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--~~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--STTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH--HHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999999864 8999999999763 356999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 8999888753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=339.59 Aligned_cols=190 Identities=18% Similarity=0.196 Sum_probs=161.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEE-EEccCCCCCCCCCHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSG-YCEQNDIHSPYVTVY 958 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~g-y~~q~~~~~~~~tv~ 958 (1119)
+.+|+||||+|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.++.....++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 469999999999 9999999999999999999999987 4 4899999997753211255799 99999877 89999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
||+.+...++ .. ..+.++++++.+++. +..++.+ .+||||||||++|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9999875433 11 123578899999998 8777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc-eEeEEecCcEEEEecCC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~~l~l~~gG~v~~~g~~ 1092 (1119)
|+.++..+++.|+++.+ |||++||+++ .+...|| ++++|.+ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998753 9999999975 4567799 9999975 889988864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.13 Aligned_cols=200 Identities=23% Similarity=0.363 Sum_probs=161.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.+++ +|+|.++|+++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4589999999999999999999999999999999999864 799999999875432 2357999999998886 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-------CCcccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-------GLDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 333 (1119)
||+||+.|+.. . ... + .+..+++.+ +|++..||
T Consensus 108 tv~enl~~~~~--~-~~~----------------------~---------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--D-ATD----------------------E---------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--T-CCH----------------------H---------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--C-CCH----------------------H---------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999987421 0 000 0 011222233 34555666
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCE
Confidence 6653 3456999999999999999999999999999999999999999999999853 688888887764 34 56999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=332.93 Aligned_cols=194 Identities=21% Similarity=0.203 Sum_probs=166.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEE-EeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 262 (1119)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998775321245799 99999877 7999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 341 (1119)
+||+.|...... .....++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChhh----
Confidence 999988543210 0011346688999998 888888877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC-eEEEEcCC
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD-DIILLSEG 420 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~i~lL~~G 420 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|++++ . |+|++.|++ .++.++|| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 99999999999999999999999999999999999999999999864 2 777777665 56778999 99999999
Q ss_pred eEEEEcChhHHH
Q 001228 421 QIVYQGPRDNVL 432 (1119)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1119)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=326.46 Aligned_cols=188 Identities=17% Similarity=0.265 Sum_probs=158.2
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999987 999999998875 24567999999999999999999
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
|+.|+....+. .. + ...++.+++.+||++. +..+++ ||
T Consensus 98 nl~~~~~~~~~--------------------~~---------------~-~~~~~~~l~~~gl~~~-~~~~~~-----LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------KV---------------N-KNEIMDALESVEVLDL-KKKLGE-----LS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------CC---------------C-HHHHHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHhcCC--------------------ch---------------H-HHHHHHHHHHcCCCcC-CCChhh-----CC
Confidence 99886432210 00 0 1234668899999887 777766 99
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++. ++|+|++.|++. ++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998754 788888887764 677788887654 3443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=358.77 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=176.2
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. +++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEE
Confidence 46899998876631 11459999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccc-------cCCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM-------VGLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~ 1002 (1119)
+. ...+++.+||++|++.+++. ||+||+.++.. .+.. ++.++++++.+++.+..++. ++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE----GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC----CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 64 34567789999999998875 99999987531 1111 34477888888887654443 2322
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ....||++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--TIEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 999999999974 4567999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b5x_A 554 -GEIIERGRHA 563 (582)
T ss_pred -CEEEEECCHH
Confidence 8999998753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=352.33 Aligned_cols=200 Identities=24% Similarity=0.277 Sum_probs=165.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++..... ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 468999999999999999999999999999999999986 4 8999999999876543 367999999999997 6
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC---
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD--- 337 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 337 (1119)
||+||+.+.... ....++.+++.+||++..+..+..
T Consensus 109 tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 999999642110 001234567778887665555432
Q ss_pred ---ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 338 ---EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 338 ---~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+.|+|++.|+. +....||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEE
Confidence 2234499999999999999999999999999999999999999999998764 367777776664 566779999
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=325.97 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=156.5
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.++++|+++.++. +++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC---
Confidence 3677777765421 23469999999999999999999999999999999999876 4589999998
Q ss_pred ChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCCCCCCC
Q 001228 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLPGVSG 1006 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~~ 1006 (1119)
.++|++|++.+++. ||+||+.++.. .... ...++++.+++.+..+. ..+. .+.+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCc
Confidence 38999999988875 99999987521 1111 12344455554332221 1221 2458
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||+++ ....||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 4899999999964 3456999999975 78
Q ss_pred EEEecCC
Q 001228 1086 VIYAGPL 1092 (1119)
Q Consensus 1086 v~~~g~~ 1092 (1119)
+++.|+.
T Consensus 207 i~~~g~~ 213 (229)
T 2pze_A 207 SYFYGTF 213 (229)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9888874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=352.01 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=174.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. ++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.+
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~ 83 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVS 83 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCB
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEE
Confidence 35788888765521 23569999999999999999999999999999999999864 47999999988
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCC------CC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL------PG 1003 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~ 1003 (1119)
+.. ..+++.+||++|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.+.. ..
T Consensus 84 i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 84 WDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp TTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred CCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 643 345678999999999887 69999996321 11 123478899999998877766431 11
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||++||+++ ....||++++|++
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~- 228 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE- 228 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-
Confidence 23499999999999999999999999999999999999999999999864 5899999999974 4566999999975
Q ss_pred cEEEEecCCC
Q 001228 1084 GRVIYAGPLG 1093 (1119)
Q Consensus 1084 G~v~~~g~~~ 1093 (1119)
|+++..|+..
T Consensus 229 G~i~~~g~~~ 238 (390)
T 3gd7_A 229 NKVRQYDSIL 238 (390)
T ss_dssp TEEEEESSHH
T ss_pred CEEEEECCHH
Confidence 8999998754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=361.25 Aligned_cols=212 Identities=24% Similarity=0.358 Sum_probs=171.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++|+|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 353 ~~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CeEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEE
Confidence 4689999887653 12359999999999999999999999999999999999876 458999999987
Q ss_pred CC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccccc-------CCC
Q 001228 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-------GLP 1002 (1119)
Q Consensus 933 ~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~ 1002 (1119)
+. ...+++.+||++|++.+++ .||+||+.++.. +.. ++.++++++.+++.+..+..+ +.
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~- 487 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTD- 487 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccchhcC-
Confidence 64 3456778999999998886 599999987521 111 122456666666544333321 11
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
...+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ....||++++|++
T Consensus 488 ~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~~ 564 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN--TIKNADLIIVLRD 564 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT--HHHHCSEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEEC
Confidence 124799999999999999999999999999999999999999999999986 5999999999986 3466999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 565 -G~i~~~g~~~ 574 (598)
T 3qf4_B 565 -GEIVEMGKHD 574 (598)
T ss_dssp -SSEEECSCHH
T ss_pred -CEEEEECCHH
Confidence 8899999854
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=326.60 Aligned_cols=200 Identities=22% Similarity=0.368 Sum_probs=154.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|+++.++. ++..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 567777765421 12469999999999999999999999999999999999876 5689999998
Q ss_pred hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC------Ccc-ccccCCCCCCCC
Q 001228 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK------SLN-DSMVGLPGVSGL 1007 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~------~~~-~~~~~~~~~~~L 1007 (1119)
.+||++|++.+ +..||+||+.++... ... ..+++++.+++. +.. +...+. .+.+|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL----EEP------YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC----CTT------HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc----CHH------HHHHHHHHHhhHHHHHhccccccccccC-CCCCC
Confidence 28999999864 678999999875321 111 122333333332 110 111111 24579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||+++. ...||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--~~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--LPQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT--GGGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH--HHhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999863 356999999975 7
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
++++.|+..
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999888753
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=322.28 Aligned_cols=196 Identities=22% Similarity=0.332 Sum_probs=151.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999987 99999998 48999999998885 999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+.... ..+ . +...+.. ..+..++.+ +...++.+++ ....|
T Consensus 87 enl~~~~~~~----~~~-~------------------~~~~~~~---------~l~~~~~~~--~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----EYR-Y------------------RSVIKAC---------QLEEDISKF--AEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----HHH-H------------------HHHHHHT---------TCHHHHTTS--TTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----hHH-H------------------HHHHHHh---------CcHHHHHhC--cccccccccC-CCCcC
Confidence 9998853210 000 0 0000000 001122222 2233455542 24569
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~-l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||+||+||+.+|+++||||||+|||+.++..+.+. ++++. .++|+|++.|++. ++ ..||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 45543 2678888877753 44 56999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=368.94 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=173.9
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++|+|+++.++. ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 339 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSS
T ss_pred CCcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCE
Confidence 346899999886641 23469999999999999999999999999999999999876 45899999999
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~ 1001 (1119)
++.. ..+++.++|++|++.+++. ||+||+.++.. +... +.++++++..++.+. .+..++.
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 8643 4567789999999998865 99999987521 1111 234455555555432 2333333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|+|++||+++ ....||++++|+
T Consensus 476 ~-~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~ 551 (587)
T 3qf4_A 476 G-GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLH 551 (587)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEE
Confidence 2 45799999999999999999999999999999999999999999999975 5899999999974 556899999997
Q ss_pred cCcEEEEecCCCC
Q 001228 1082 RGGRVIYAGPLGH 1094 (1119)
Q Consensus 1082 ~gG~v~~~g~~~~ 1094 (1119)
+ |++++.|+..+
T Consensus 552 ~-G~i~~~g~~~e 563 (587)
T 3qf4_A 552 E-GKVAGFGTHKE 563 (587)
T ss_dssp T-TEEEEEECHHH
T ss_pred C-CEEEEECCHHH
Confidence 5 89999998643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=360.82 Aligned_cols=208 Identities=24% Similarity=0.394 Sum_probs=168.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46899999999999999999999999999999999999997 9999999999876543 4679999999999976
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.... +.++..+++...+ .+.. .-.+++..||.+|+ .+
T Consensus 430 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--~~~lp~g~~t~~~~-~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA-------------------------TDEEVVEAAKMAN------AHDF--IMNLPQGYDTEVGE-RG 475 (578)
T ss_dssp BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSTTGGGCBCCG-GG
T ss_pred cHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------cHHH--HHhCcchhhhhhcc-CC
Confidence 9999998853110 0011111111111 0111 22456778899985 44
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++.+ ++|+|++.|++. . .+.||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-T-ITHADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-G-TTTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998753 688888877764 3 4569999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=360.87 Aligned_cols=208 Identities=25% Similarity=0.350 Sum_probs=168.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG- 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-
Confidence 46899999999999999999999999999999999999997 9999999999876543 4679999999999865
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+.... +.++..+++...+ .+..+ -.|++..||.+|+ ..
T Consensus 432 tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~i--~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA-------------------------TDDEIVEAAKIAQ------IHDFI--ISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTT------CHHHH--HTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCCC-------------------------CHHHHHHHHHHhC------cHHHH--HhcccchhhHhcC-CC
Confidence 9999998753210 0001111111100 01111 2456678888885 44
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++|+||||||+||+.+...+.+.++++.+ ++|+|++.|++. ....||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~--~~~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIP--TALLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHH--HHTTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChH--HHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998743 789988888764 44689999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=364.31 Aligned_cols=214 Identities=24% Similarity=0.349 Sum_probs=174.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
+..++++|+++.++. ++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCE
Confidence 346899999876642 22459999999999999999999999999999999999876 45899999998
Q ss_pred cCCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccc-------cccCC
Q 001228 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-------SMVGL 1001 (1119)
Q Consensus 932 ~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~ 1001 (1119)
++.. ..+++.+||++|++.+++. ||+||+.++.. +.. ++.++++++..++.+..+ ..++.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 7643 4567789999999998876 99999987521 111 233566777776654332 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. ..+||||||||++|||||+++|+||+|||||||||+.+++.+++.++++. +|+|+|++||+++ ....||++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred C-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 2 34799999999999999999999999999999999999999999999885 5899999999986 346799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+ |++++.|+..
T Consensus 550 ~-G~i~~~g~~~ 560 (578)
T 4a82_A 550 N-GHIVETGTHR 560 (578)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEEEECCHH
Confidence 5 8999999854
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=321.76 Aligned_cols=196 Identities=23% Similarity=0.313 Sum_probs=151.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+ +.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCCC-CSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCcC-CCcCHH
Confidence 46899999999999999999999999999999999999886 99999998 38999999864 578999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc-ccccccccCccCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~rG 342 (1119)
||+.|+.... .. ..+...++ ..+.+.+++. ...++.++ .....
T Consensus 84 enl~~~~~~~--~~---------------------~~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EP---------------------YYRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TT---------------------HHHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HH---------------------HHHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 9998853210 00 00000000 0011223321 12233333 23345
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK---QMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~---~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+.+|+++||||||+|||+.++..+++.|+ ++. .++|+|++.|++. .+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999984 332 3788888888764 33 57999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=363.89 Aligned_cols=214 Identities=22% Similarity=0.317 Sum_probs=175.6
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..++++|+++.++. +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~ 406 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 406 (582)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred CcEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEE
Confidence 35889998876531 11459999999999999999999999999999999999876 458999999988
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcccc-------ccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~ 1002 (1119)
+.. ..+++.+||++|++.+++. ||+||+.++.. .+.. ++.++++++.+++.+..++ .++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~ 477 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFND-TVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN 477 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred ccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC
Confidence 643 3456789999999998875 99999987531 1111 2346788888888654433 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ....||++++|++
T Consensus 478 -~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~ 553 (582)
T 3b60_A 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED 553 (582)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 457999999999999999999999999999999999999999999999864 999999999986 3467999999975
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b60_A 554 -GIIVERGTHS 563 (582)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEecCHH
Confidence 8999988753
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=359.58 Aligned_cols=202 Identities=23% Similarity=0.388 Sum_probs=167.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-
Confidence 46899999999999999999999999999999999999997 9999999999876432 4579999999999875
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-------Ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 333 (1119)
||+||+.|+.. .. . +.++ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~---------------------~~~~---------------~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EE--Y---------------------SREQ---------------IEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SC--C---------------------CHHH---------------HHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CC--C---------------------CHHH---------------HHHHHHHcCCHHHHHhccccccc
Confidence 99999988531 00 0 0001 112222333 3456788
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+|+ .+..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++.+ ++|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCE
Confidence 8885 3566999999999999999999999999999999999999999999999864 789888888764 3467999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++++|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=358.62 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=166.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1119)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-
Confidence 45899999999999999999999999999999999999997 999999999886543 24679999999999874
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcC-------Ccccccc
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 333 (1119)
||+||+.|+.. .. . +.++ ++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~~--~---------------------~~~~---------------~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GE--Y---------------------TREQ---------------IEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CC--C---------------------CHHH---------------HHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 00 0 0000 112222333 3456788
Q ss_pred cccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
.+|+ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCE
Confidence 8885 3456999999999999999999999999999999999999999999999853 789998888764 3457999
Q ss_pred EEEEcCCeEEEEcChhHHHH
Q 001228 414 IILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 414 i~lL~~G~iv~~G~~~~~~~ 433 (1119)
|++|++|+++++|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998854
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=360.28 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=168.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46899999999999999999999999999999999999997 9999999999876543 467999999999886 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+||+.|+..... +.++ .+++...+ .+..++ .+++..||.+|+ .+
T Consensus 444 tv~eni~~~~~~~~----------------------~~~~---~~~~~~~~------~~~~~~--~~~~g~~t~~~~-~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGAT----------------------DEEI---KEAAKLTH------SDHFIK--HLPEGYETVLTD-NG 489 (598)
T ss_dssp BHHHHHHSSSTTCC----------------------TTHH---HHHTTTTT------CHHHHH--TSTTGGGCBCHH-HH
T ss_pred cHHHHHhcCCCCCC----------------------HHHH---HHHHHHhC------CHHHHH--hccccccchhcC-CC
Confidence 99999988522100 0011 11110000 011122 355677888884 34
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|++|+||||||+||+.+...+.+.++++.+ ++|+|++.|++. . ...||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLN-T-IKNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTT-H-HHHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999853 789998888775 3 4569999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=385.58 Aligned_cols=211 Identities=26% Similarity=0.353 Sum_probs=173.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
..+||+|||++|+|||.+||+||+|||||||+++|.|.++|. +|+|.+||+++.+... ++.++||||++.+|+.
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 456999999999999999999999999999999999999997 9999999999987653 5789999999999975
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
||||||.|+..- ++.+.++..+++...+.. + . .-.|++..||.||+ .
T Consensus 1168 -TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~-----~-~--I~~Lp~GldT~vge-~ 1214 (1321)
T 4f4c_A 1168 -SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIH-----N-F--IAELPEGFETRVGD-R 1214 (1321)
T ss_dssp -EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCH-----H-H--HHTSTTTTCSEETT-T
T ss_pred -cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCCh-----H-H--HHcCcCCCCCEecC-C
Confidence 999999875311 011112222333222211 1 1 22578889999996 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
+..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++..+ ++|+|+..|.. .+...||+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRL--sTi~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRL--NTVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSS--STTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCH--HHHHhCCEEEEEEC
Confidence 455999999999999999999999999999999999999999999988653 78988887765 46778999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999985
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.43 Aligned_cols=184 Identities=24% Similarity=0.384 Sum_probs=146.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~en 118 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKEN 118 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHHH
Confidence 58999999999999999999999999999999999876 5689999988 38999999988875 99999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1033 (1119)
+. +. . .... .+.++++.+++.+..+.. .+. .+.+||||||||++|||||+.+|+|||||||
T Consensus 119 l~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 119 II-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 97 31 1 1111 133455555554322211 111 1357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1034 TSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
|+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|.+ |++++.|+..
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 9999999999999974 4554 5899999999964 4456999999975 7899888753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-34 Score=316.49 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=148.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 35899999999999999999999999999999999999886 99999998 48999999988875 999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+. +... .... .+...+.. ..+..++.+ ....++.+++ ....|
T Consensus 117 enl~-~~~~----~~~~-------------------~~~~~~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY----DEYR-------------------YRSVIKAC---------QLEEDISKF--AEKDNIVLGE-GGITL 160 (290)
T ss_dssp HHHH-TTCC----CHHH-------------------HHHHHHHT---------TCHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc----chHH-------------------HHHHHHHh---------ChHHHHHhc--cccccchhcC-ccCcC
Confidence 9997 3210 0000 00000000 001122222 2233444442 23459
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||||||||+||+||+.+|+++||||||+|||+.++..+.+.+ +++. .++|+|++.|++ ..+ ..||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999864 4443 267888887775 344 56999999999999
Q ss_pred EEEcChhHHH
Q 001228 423 VYQGPRDNVL 432 (1119)
Q Consensus 423 v~~G~~~~~~ 432 (1119)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=357.41 Aligned_cols=215 Identities=26% Similarity=0.377 Sum_probs=173.7
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...++|+|+++.++.. +...+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 385 ~g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~--~~~G~i~i~g~ 452 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD--PLDGMVSIDGQ 452 (1284)
T ss_dssp CCCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC--CSEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCE
Confidence 3468999998876421 12459999999999999999999999999999999999876 45899999998
Q ss_pred cCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCC
Q 001228 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGL 1001 (1119)
Q Consensus 932 ~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~ 1001 (1119)
++. ...+++.+|||+|++.+++. ||+||+.|+.. +.. ++.++++++..++.+. .+..+|.
T Consensus 453 ~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~ 522 (1284)
T 3g5u_A 453 DIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522 (1284)
T ss_dssp EGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSS
T ss_pred EHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccC
Confidence 764 34567789999999998876 99999998631 111 1234555555554332 2334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
. +.+||||||||++|||||+++|+||+||||||+||+++.+.+++.++++. +|+|+|+|+|+++ ....||++++|+
T Consensus 523 ~-g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~--~i~~~d~i~vl~ 598 (1284)
T 3g5u_A 523 R-GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS--TVRNADVIAGFD 598 (1284)
T ss_dssp S-SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH--HHTTCSEEEECS
T ss_pred C-CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHcCCEEEEEE
Confidence 3 35799999999999999999999999999999999999999999998875 5999999999964 556799999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+|++++.|+..
T Consensus 599 -~G~i~~~g~~~ 609 (1284)
T 3g5u_A 599 -GGVIVEQGNHD 609 (1284)
T ss_dssp -SSCCCCEECHH
T ss_pred -CCEEEEECCHH
Confidence 58999998753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=317.84 Aligned_cols=191 Identities=26% Similarity=0.303 Sum_probs=161.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999987 899976 2369999999887788999998
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+.+.... .+ . ....++.+++.+||.+..++.+++ |||
T Consensus 438 ~~~~~~~-----~~--------~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----KL--------N-------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----HH--------H-------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----CC--------C-------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8652100 00 0 011346688999999988999887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.| ...++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999997666778777765 45688899999999986 8889
Q ss_pred EEcChhHHHH
Q 001228 424 YQGPRDNVLE 433 (1119)
Q Consensus 424 ~~G~~~~~~~ 433 (1119)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=313.25 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=160.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 467777888999999999999999999999999999986 899975 2359999999877788999998
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+...... ... ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 011245678899999888998887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++.| ...++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999987555778777655 55688899999999986 8899
Q ss_pred EEcChhHHHH
Q 001228 424 YQGPRDNVLE 433 (1119)
Q Consensus 424 ~~G~~~~~~~ 433 (1119)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=308.49 Aligned_cols=192 Identities=22% Similarity=0.253 Sum_probs=159.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
.|+++|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466778889999999999999999999999999999997 99999865 358999999777778999999
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+.+...... .. ....++.+++.+||.+..+..+++ |||
T Consensus 351 l~~~~~~~~--------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDAL--------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSSTT--------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhcc--------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 976321000 00 011245678899999999999887 999
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC--CeEE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~--G~iv 423 (1119)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++. |...++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999999876677777665 556688999999999986 6677
Q ss_pred EEcChhHHH
Q 001228 424 YQGPRDNVL 432 (1119)
Q Consensus 424 ~~G~~~~~~ 432 (1119)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-32 Score=328.44 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=113.2
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAW 966 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~ 966 (1119)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++.. .+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~~----~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESRA----QLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCHH----HHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCHH----HHHHHH-----
Confidence 459999999999999999999999999985321 121 124555665310 122221
Q ss_pred hhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----H
Q 001228 967 LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1041 (1119)
Q Consensus 967 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~-----~ 1041 (1119)
.+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||+|||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 112 2234555554444 3479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCc----------cHHHHHhhceEeEEec
Q 001228 1042 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~~~~~~d~~l~l~~ 1082 (1119)
++.+.++++.+++.|.|||+|+|+. . .+...+|++++|.+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQY 442 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEE
Confidence 9999999999988899999999997 3 34567899999976
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=308.18 Aligned_cols=193 Identities=24% Similarity=0.234 Sum_probs=160.6
Q ss_pred ceeeeceEEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCC
Q 001228 184 VRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 258 (1119)
..+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 789999999999999999999999986 7752 1 1346999999977666
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
..||+|++....+ +.. . .....+.+++.+||.+..+..+++
T Consensus 427 ~~tv~e~~~~~~~--~~~-------------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF-------------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHCS--STT-------------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHhh--ccc-------------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 7899998753211 100 0 011245678999999999999887
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|++.| ...++..++|+|++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtH-dl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH-DFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987656788777655 5568899999999998
Q ss_pred C--CeEEEEcChhHHHH
Q 001228 419 E--GQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~--G~iv~~G~~~~~~~ 433 (1119)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=317.06 Aligned_cols=205 Identities=22% Similarity=0.294 Sum_probs=134.1
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHH---------------------HhHcCCCCC--Cee---EEEEEECCccC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTG--GYI---EGDIKISGYPK 933 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl---------------------~~L~g~~~~--g~~---~G~i~i~g~~~ 933 (1119)
..+|+||||+|++||++||+||||||||||+ +++.|...+ +.+ .+.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999997 566654332 112 35677777654
Q ss_pred ChhhhcceEEEEccCCC-------------------CCCCCCHHHHHHHHHHhhcCCCccHHHHH------HHHHHHHHH
Q 001228 934 NQETFARVSGYCEQNDI-------------------HSPYVTVYESLLYSAWLRLSSDVDTKKRK------MFVDEVMEL 988 (1119)
Q Consensus 934 ~~~~~~~~~gy~~q~~~-------------------~~~~~tv~e~l~~~~~l~~~~~~~~~~~~------~~~~~~l~~ 988 (1119)
... .++.+||++|... .++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233455555432 2356899999987432221110 000000 111245888
Q ss_pred cCCCCc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 989 VELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 989 ~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
++|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 898764 46653 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhhceEeEEe-----cCcEEEEecCCC
Q 001228 1066 PSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1119)
Q Consensus 1066 ~~~~~~~~~d~~l~l~-----~gG~v~~~g~~~ 1093 (1119)
++ ....||++++|. ++|++++.|+..
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~ 294 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPE 294 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHH
Confidence 64 556799999993 468999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=315.46 Aligned_cols=182 Identities=20% Similarity=0.286 Sum_probs=148.3
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCC-CCCCCCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IHSPYVT 956 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~-~~~~~~t 956 (1119)
+++.+|+||||+|++|+++||+|||||||||||++|+| | .| +|.+... ...++|++|+. ..++.+|
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag----G----~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----G----QV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH----T----CS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC----C----Cc--CCCcccc---ceeEEEEcccccccccCCc
Confidence 34579999999999999999999999999999999994 1 11 3433221 12368999875 5678899
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-CccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts 1035 (1119)
|.|++.+ .. ... .+.+.++++.+++. +..++.+ .+||||||||++|||+|+.+|+||||||||+
T Consensus 513 v~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 513 VLDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp HHHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred HHHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 9999975 11 111 34578899999994 5666664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEE-EecCC
Q 001228 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAGPL 1092 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~-~~g~~ 1092 (1119)
|||+.++..+++.|++ .|.|||++||+++ .+...||++++|.+ |+++ +.|+.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 9999999999999998 5899999999975 46678999999975 6775 67764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=275.65 Aligned_cols=106 Identities=26% Similarity=0.274 Sum_probs=92.8
Q ss_pred HHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 001228 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (1119)
Q Consensus 319 ~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p---~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~ 394 (1119)
..+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 56889999987 67777776 9999999999999999764 99999999999999999999999999976 478
Q ss_pred EEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 395 t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
|+|++.|+. .+ ...||+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 888777664 34 4789999999 789999999999875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=271.74 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChHHHHHHHHHHHHhcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 317 ~~~~~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p---~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
....+|+.+||... .+..+++ |||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~-----LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATT-----LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTT-----CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCccC-----CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 34568899999753 3445544 9999999999999999865 79999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHHH
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~~ 433 (1119)
|.|+|++.|+. ++...||+|++| ++|+++++|+++++.+
T Consensus 858 G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 GNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp TCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCEEEEEeCCH--HHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 78888776654 345679999999 8999999999999853
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=257.04 Aligned_cols=203 Identities=17% Similarity=0.154 Sum_probs=140.0
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCC------------------------------------CeeEE
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYIEG 924 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~------------------------------------g~~~G 924 (1119)
.+|++++++|.+| +++|+|+|||||||||++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 9999999999999999999653211 01157
Q ss_pred EEEECCccCChhh---hc-ceEEEEccCCCCCCCCCHHHHHHHHHHhhcC-----------------------CCc----
Q 001228 925 DIKISGYPKNQET---FA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-----------------------SDV---- 973 (1119)
Q Consensus 925 ~i~i~g~~~~~~~---~~-~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~-----------------------~~~---- 973 (1119)
.+.++|.+.+... +. ..+++++|++.++.. +..+...|.-+.... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 8999998876422 22 348999998766543 454444332111000 000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCCcc----------------cc---ccCC---
Q 001228 974 ------------------------------DTKKRKMFVDEVMELVELKSLN----------------DS---MVGL--- 1001 (1119)
Q Consensus 974 ------------------------------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~~~~--- 1001 (1119)
....-...+.+.++.+++.... +. ....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000112344455555554310 00 0000
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhc
Q 001228 1002 ---PGVSG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1119)
Q Consensus 1002 ---~~~~~-LS~Gqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1119)
..+.. ||||||||++||++|+.+| +||||||||+|||+.+...|.+.|+++. +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 00112 7999999999999999999 9999999999999999999999999997 599999999996 4567899
Q ss_pred eEeEE----ecCcEEEEe
Q 001228 1076 ELLLL----KRGGRVIYA 1089 (1119)
Q Consensus 1076 ~~l~l----~~gG~v~~~ 1089 (1119)
++++| .+ |+++..
T Consensus 364 ~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp EEEEEEEEEET-TEEEEE
T ss_pred eEEEEEEeccC-CceEEE
Confidence 99999 65 666554
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-27 Score=277.59 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=146.0
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-E-EEECCccCCCCcccceEEEeccCCC---CCCCCCH
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-K-ITYCGHELNEFVPQRTCAYISQHDL---HHGEMTV 262 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~-I~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 262 (1119)
.++|+.+++|++++|+||||||||||+++|+|.+.++ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999875 89 8 999982 3567899999984 4566899
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
+||+ |+......... ...+..+++.+||++..+ .. .
T Consensus 200 ~eni-~~~~~~~~~~~------------------------------------~~~~~~ll~~~gl~~~~~--~~-----~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL------------------------------------LHNKQPMVKNFGLERINE--NK-----D 235 (460)
T ss_dssp TCTT-CSCBCBSSCCS------------------------------------SCCBCCEECCCCSSSGGG--CH-----H
T ss_pred hhhh-cccccccCcch------------------------------------HHHHHHHHHHhCCCcccc--hh-----h
Confidence 9999 75432100000 001123566788887665 43 3
Q ss_pred CChHHHHHHHHHHH--HhcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch-----hHHhh
Q 001228 343 ISGGQKKRVTTGEM--LVGTANV----LYMDE-ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP-----ETYDL 410 (1119)
Q Consensus 343 LSGGqkkRvsia~a--l~~~p~i----lllDE-PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~~ 410 (1119)
|||||||||++|++ |+.+|++ ||||| ||++||+. ...+.+.++ ..+.|+|+++|++.. ++.++
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999998 444444444 347788888888752 55689
Q ss_pred cCe-----EEEEc-CCeEEEEcChhHHH
Q 001228 411 FDD-----IILLS-EGQIVYQGPRDNVL 432 (1119)
Q Consensus 411 ~D~-----i~lL~-~G~iv~~G~~~~~~ 432 (1119)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987663
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-27 Score=278.81 Aligned_cols=195 Identities=15% Similarity=0.082 Sum_probs=148.3
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-E-EEECCccCChhhhcceEEEEccCCC---CCCCCCHH
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-D-IKISGYPKNQETFARVSGYCEQNDI---HSPYVTVY 958 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~-i~i~g~~~~~~~~~~~~gy~~q~~~---~~~~~tv~ 958 (1119)
.++|+++++|++++|+||||||||||+++|+|... +..| + |.++|. .++.++|++|+.. +.+.+|++
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 48999999999999999999999999999999865 4578 8 999982 2467899999984 45567999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCe----EEEeC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE--LVANPSI----IFMDE 1032 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a--L~~~p~i----llLDE 1032 (1119)
||+ |+........ ..+.+.++++.+++.+..+ +.+|||||||||+|||+ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 988 6433211100 0112445677777776554 23799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc--H---HHHHhhce-----EeEEecCcEEEEecCCCCC----hH
Q 001228 1033 -PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LLLLKRGGRVIYAGPLGHE----SH 1097 (1119)
Q Consensus 1033 -PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----~l~l~~gG~v~~~g~~~~~----~~ 1097 (1119)
||++||+. ...+.++++++ |.|+|+++|+.+ . .....+|+ +++|.++|+++ .|+.... ..
T Consensus 268 pPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~ 342 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRT 342 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHH
T ss_pred CcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHH
Confidence 99999999 66666666553 789999999976 3 34467899 99997356677 7765321 23
Q ss_pred HHHHHhh
Q 001228 1098 KLIEYFE 1104 (1119)
Q Consensus 1098 ~l~~~f~ 1104 (1119)
.+.+||.
T Consensus 343 ~i~~~f~ 349 (460)
T 2npi_A 343 SIREYFY 349 (460)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 4778885
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=266.77 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHHHHHHHhcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001228 317 VTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1119)
Q Consensus 317 ~~~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvsia~al~~~---p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~ 392 (1119)
.+..+|+.+||.. ..+..+++ |||||||||.||++|+.+ |++|||||||+|||+.+...+.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 3567899999987 35777766 999999999999999996 799999999999999999999999999976 4
Q ss_pred CcEEEEEEecCchhHHhhcCeEEEE------cCCeEEEEcChhHHH
Q 001228 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~i~lL------~~G~iv~~G~~~~~~ 432 (1119)
|.|+|++.|+ ..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 7787777665 4456 889999999 799999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=245.33 Aligned_cols=236 Identities=15% Similarity=0.129 Sum_probs=150.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------------CCcc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----------------------------------LRAS 228 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~-----------------------------------~~~~ 228 (1119)
..+|+++|+.+.+| +++|+|||||||||||++|.+.+.+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34799999999999 99999999999999999997765420 0126
Q ss_pred eEEEECCccCCCCcc----cceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC-c----hhHHhHHhhHHHHhcCCCCC--
Q 001228 229 GKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQAGIKPD-- 297 (1119)
Q Consensus 229 G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~-- 297 (1119)
|++.+||.+++.... ...+++++|++.++.. +..+...|.-...... . .+.......+..... .+..
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Confidence 889999998763221 2348999999876543 6665555532211000 0 000000000000000 0000
Q ss_pred ---------hhHHHHHHHHH-----------hhccchhhHHHHHHHHcCCcccc----------------cc---cccC-
Q 001228 298 ---------PEIDAFMKAVA-----------VAGQETSLVTDYVLKILGLDICA----------------DT---MVGD- 337 (1119)
Q Consensus 298 ---------~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 337 (1119)
...+.+.+... .........++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00111100000 00111223455667777775411 00 1111
Q ss_pred -----ccCCC-CChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHh
Q 001228 338 -----EMRRG-ISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (1119)
Q Consensus 338 -----~~~rG-LSGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 409 (1119)
...+. +||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ +.|+|++.|.+ ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~vi~itH~~--~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEeCcH--HHHh
Confidence 00111 6999999999999999999 99999999999999999999999999873 78888888775 6678
Q ss_pred hcCeEEEE----cCCeEEEEc
Q 001228 410 LFDDIILL----SEGQIVYQG 426 (1119)
Q Consensus 410 ~~D~i~lL----~~G~iv~~G 426 (1119)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=233.69 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+|||+++ ....+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 4579999999999999999 799999999999999999999999999999888999999999964 57789999
Q ss_pred eEEecCcEEEE
Q 001228 1078 LLLKRGGRVIY 1088 (1119)
Q Consensus 1078 l~l~~gG~v~~ 1088 (1119)
++|.+ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99975 77764
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-26 Score=240.58 Aligned_cols=145 Identities=15% Similarity=0.149 Sum_probs=98.5
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 4456789996 89999999999999999999999998 5 23444421000011123456799999976
Q ss_pred HHHHH-HHHH----HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 957 VYESL-LYSA----WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 957 v~e~l-~~~~----~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+||+ .+.. .+... .. .+.++++++. + | |||||++|||||+.+|+|||||
T Consensus 76 -~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 11100 00 1123444442 1 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
|||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999988 6689999 999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-23 Score=214.16 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=103.3
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCC-CCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP-YVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~-~~tv~e~l~~ 963 (1119)
||||++++||+++|+||||||||||++++.+-.. . ++ ... ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--~------~~-----~d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--V------IS-----SDF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--E------EE-----HHH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--E------Ec-----cHH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999774211 1 11 111 1256666543110 001111111
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH---
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1040 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~--- 1040 (1119)
...+.....+.....+.. ...|+|||||++||++++.+|++|+|||||++||+.
T Consensus 64 -----------------~~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 -----------------YIVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp -----------------HHHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred -----------------HHHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111122233444333332 347999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1041 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1041 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
....+++.++++.++|.|+|+++|+++ ....+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 558899999988777999999999853 4444443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-22 Score=225.47 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE--
Q 001228 1004 VSGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-- 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~-- 1077 (1119)
+..||+|||||++||++|+ .+|+||||||||++||+.....+.+.|+++. +|.|||+|||++ ++...+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEE
Confidence 3579999999999999997 6899999999999999999999999999984 589999999996 356788986
Q ss_pred eEEecCcEEEEecCCC
Q 001228 1078 LLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1078 l~l~~gG~v~~~g~~~ 1093 (1119)
++|.+|...+....+.
T Consensus 294 v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEESSSCEEEEECCC-
T ss_pred EEEeCCEEEEEEEEcc
Confidence 7887766666655543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=219.53 Aligned_cols=81 Identities=22% Similarity=0.433 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+ .|.|+|++.|++. ..+.+|++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEE
Confidence 349999999999999999 79999999999999999999999999999875 4789888887753 47889999
Q ss_pred EEEcCCeEEE
Q 001228 415 ILLSEGQIVY 424 (1119)
Q Consensus 415 ~lL~~G~iv~ 424 (1119)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-23 Score=219.60 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=97.0
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC--CCcccceEEEeccCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~--~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.++.+|+|| ++|++++|+|||||||||||++|+|. +|+ +|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 446789996 89999999999999999999999999 775 777732 1111 112346799999975
Q ss_pred CCHHHHH-HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 260 MTVRETL-DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 260 lTV~E~l-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
+||+ .|.... ++ .+. ... ....++.+++. |
T Consensus 76 ---~enl~~~~~~~------~~---~~~------~~~------------------~~~~~~~~l~~-g------------ 106 (208)
T 3b85_A 76 ---NEKIDPYLRPL------HD---ALR------DMV------------------EPEVIPKLMEA-G------------ 106 (208)
T ss_dssp -------CTTTHHH------HH---HHT------TTS------------------CTTHHHHHHHT-T------------
T ss_pred ---HHHHHHHHHHH------HH---HHH------Hhc------------------cHHHHHHHHHh-C------------
Confidence 6666 342110 00 000 000 00122334432 2
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
+ ||||||+||+||+.+|++|||||||+| ++..+.+.|+++ + .+.|+| +.|++
T Consensus 107 ----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 107 ----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp ----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred ----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 3 999999999999999999999999999 888889999887 3 367777 77764
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-21 Score=215.97 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE--E
Q 001228 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI--I 415 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i--~ 415 (1119)
.|||||||||+||++|+ .+|++++|||||++||+..+..+.+.|+++.+ +.++|++.|.+ ++.+.+|++ +
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~tH~~--~~~~~~d~~~~v 294 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLHGV 294 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECCH--HHHhhCceEEEE
Confidence 39999999999999997 68999999999999999999999999998743 67888877764 678899987 7
Q ss_pred EEcCCeE-EEEcChhHH
Q 001228 416 LLSEGQI-VYQGPRDNV 431 (1119)
Q Consensus 416 lL~~G~i-v~~G~~~~~ 431 (1119)
+|.+|.. +.....++.
T Consensus 295 ~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 295 TMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EESSSCEEEEECCC---
T ss_pred EEeCCEEEEEEEEcchh
Confidence 8888755 444555543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-23 Score=240.13 Aligned_cols=171 Identities=16% Similarity=0.196 Sum_probs=134.4
Q ss_pred ceeeccceeeeeCCc--------------------EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhc
Q 001228 880 LQLLHSVSGVFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA 939 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge--------------------~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~ 939 (1119)
..+|++||+++++|+ ++||+||||||||||+|+|+|... +.+|.|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 358999999999999 999999999999999999999765 34688888886542
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH--HHHHHHH
Q 001228 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE--QRKRLTI 1017 (1119)
Q Consensus 940 ~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~i 1017 (1119)
+ .+|++|++ .++.+|+.|++.++. . ...++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899985 467788888765431 0 12367889999887653222 28999 9999999
Q ss_pred HHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----CeEEEEecCccH-HHHHhhceE
Q 001228 1018 AVELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDEL 1077 (1119)
Q Consensus 1018 A~aL~~----------~p~illLDEPtsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~~ 1077 (1119)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++.+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 322 678899998752 266677877
Q ss_pred e
Q 001228 1078 L 1078 (1119)
Q Consensus 1078 l 1078 (1119)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-24 Score=226.81 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=117.4
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
...+++| .+|++||+++|+||||||||||+++|+|... .+.+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3457888 6999999999999999999999999999754 23333333333221 12345689999988777777776
Q ss_pred HHHHHHHHhhc---CCCccHHHHHHHHHHH------HHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 959 ESLLYSAWLRL---SSDVDTKKRKMFVDEV------MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 959 e~l~~~~~l~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+++........ .......+.++.+.+. ++.+++....+.. +..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 66532211111 0012233333444444 4444554444444 23466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1030 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1030 LDEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
|||||+|+ |+..++.+++.++++.+ .|.|||+++|+++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999974 5899999999986 5778899999986554
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.3e-23 Score=236.90 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=130.2
Q ss_pred cceeeeceEEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc
Q 001228 183 SVRILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~ 242 (1119)
...+|+|||+.+++|+ +++|+||||||||||+|+|+|.++++ +|+|.++|.+.+
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t--- 108 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT--- 108 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---
Confidence 3568999999999999 99999999999999999999999887 899999997643
Q ss_pred ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH
Q 001228 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (1119)
Q Consensus 243 ~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (1119)
+ .+|++|++ .++.+|+.||+.+... ...++.++
T Consensus 109 -~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L 141 (413)
T 1tq4_A 109 -M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYL 141 (413)
T ss_dssp -C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHH
T ss_pred -e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHH
Confidence 1 27899985 5778899998754210 01235577
Q ss_pred HHcCCcccccccccCccCCCCChH--HHHHHHHHHHHhc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 323 KILGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rGLSGG--qkkRvsia~al~~----------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+.++|.+.. ..+ . +||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 142 ~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 142 EKMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp HHTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 788887643 222 1 8999 9999999999999 9999999999999999999999999988852
Q ss_pred ----hC----CcEEEEEEecCch-hHHhhcCeE
Q 001228 391 ----IL----DVTMIVALLQPAP-ETYDLFDDI 414 (1119)
Q Consensus 391 ----~~----~~t~ii~~~q~~~-~~~~~~D~i 414 (1119)
.. ..+++++.|.... .+.+++|+|
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 22 2345555544331 255555555
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-23 Score=230.63 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=117.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.++|+|+|+.|++|++++|+||||||||||+++|+|.+ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46899999999999999999999999999999999997 5887 357788887776 4888
Q ss_pred H-HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 264 E-TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 264 E-~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
| |+.|.... . . .....++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~-----------~------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------T-----------H------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------C-----------H------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------c-----------H------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77653110 0 0 011223332 444444 2 35
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|||||||| |||++.+|+||| ||+||+.+...+.. ++ |. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----lt------------H~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----LH------------SR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----GT------------TT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----Hh------------CC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 12 21 2345679999 9999999
Q ss_pred EEEcChhHHHHHHHhc
Q 001228 423 VYQGPRDNVLEFFEHM 438 (1119)
Q Consensus 423 v~~G~~~~~~~~f~~~ 438 (1119)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999997666654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-21 Score=199.52 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=98.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCcc
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~ 974 (1119)
+++|+||||||||||+++|+|.... ...|.. . .+......++.+||++|+. ++.+++ + +.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-~~~g~~-~--~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~----- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-RAIGFW-T--EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF----- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-GEEEEE-E--EEEC------CCEEEEEET------TCCEEE-E-EETTC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-cCCCEE-h--hhhccccccceeEEEeecC------cHHHHH-H-HhhcC-----
Confidence 5899999999999999999996531 122321 1 0111012346789999975 222222 1 00000
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHH
Q 001228 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAIVMR 1047 (1119)
Q Consensus 975 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a-----L~~~p~illLDE--PtsgLD~~~~~~i~~ 1047 (1119)
.-.+..++. +..||+|||||++||++ |+.+|++|+||| ||++||+...+.+.+
T Consensus 65 ---------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 ---------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ---------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ---------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 000122333 34699999999999996 999999999999 999999999999998
Q ss_pred HHHHHHhCCCeEEEEec---CccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1048 TVRNTVDTGRTVVCTIH---QPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
.+++ .+.|+|+++| +.+ .+...+|+ .+|++++..+
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 8876 4677888886 543 34455676 4567766443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-21 Score=196.31 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS----------------TTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~----------------~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
.||||||||+||+++..+|++++|||||++||+. ...++.+.++++.+. |.|+|+++|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 558888998888765 88888887764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-21 Score=199.15 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=102.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCch
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 278 (1119)
.++|+||||||||||+++|+|.+. +.+.|... .+......++.++|++|+. |+.+++ ++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~----- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SKF----- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ETT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hhc-----
Confidence 579999999999999999999984 22334321 1111002245789999975 332332 10 000
Q ss_pred hHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHH--
Q 001228 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM-- 356 (1119)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~a-- 356 (1119)
. .-++..+..+++ ||||||||++||++
T Consensus 64 ---------------~-------------------------------~~~~~~~~~~~~-----lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 64 ---------------F-------------------------------TSKKLVGSYGVN-----VQYFEELAIPILERAY 92 (178)
T ss_dssp ---------------C-------------------------------CCSSEETTEEEC-----HHHHHHHHHHHHHHHH
T ss_pred ---------------C-------------------------------CccccccccccC-----cCHHHHHHHHHHhhcc
Confidence 0 000123344444 99999999999996
Q ss_pred ---HhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe--cCchhHHhhcCeEEEEcCCeEEE
Q 001228 357 ---LVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFDDIILLSEGQIVY 424 (1119)
Q Consensus 357 ---l~~~p~illlDE--PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~i~lL~~G~iv~ 424 (1119)
++.+|++++||| ||++||+.....+.+.+++ .+.|+++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988875 3567888887 677778888887 4566654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-20 Score=210.55 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=133.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------c--cceEEEeccCCC-C
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------P--QRTCAYISQHDL-H 256 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 256 (1119)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . +..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999876 899999998764321 1 235999999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|.+||+|++.++... +. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-CC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 8889999999875210 00 0 013456788777777777
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------hh
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PE 406 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~ 406 (1119)
+ || |||++||++++.+|+ +|+|| ||+|||+... ++++.+..+.|+++.+|-+. .-
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 6 99 999999999999999 99999 9999998754 24444445788888877322 22
Q ss_pred HHhhcCeEEEEcCCeE
Q 001228 407 TYDLFDDIILLSEGQI 422 (1119)
Q Consensus 407 ~~~~~D~i~lL~~G~i 422 (1119)
.....+.|..+..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345668888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-20 Score=206.51 Aligned_cols=146 Identities=14% Similarity=0.224 Sum_probs=91.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCch
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 278 (1119)
.++|+||||||||||+++|+|...++ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47899999999999999999999886 89999999887655455789999999999999999999988654321100
Q ss_pred hHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHh
Q 001228 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358 (1119)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~ 358 (1119)
...+..+ +. ....+..+++ |||||||||++||+++
T Consensus 80 ------------------~~~i~~~------------------~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEKY------------------IN----EQYEKFLKEE-----VNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHHH------------------HH----HHHHHHHHHH-----SCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHHH------------------HH----HHHHhhhHHh-----cCcccchhhhhheeee
Confidence 0001111 10 1223344444 9999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
. ++|||||+.|||+.. .+.++.+.+. .++|++++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 5 999999999999976 3445555432 677776654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-20 Score=207.98 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=126.0
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCC-CC
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDI-HS 952 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~-~~ 952 (1119)
++++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457899999999999999999999999999999654 2358999999876431 12 236899999988 88
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEE
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFM 1030 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illL 1030 (1119)
+..|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999987532 1 111 12455667766555553 3689 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCcc-------HHHH-HhhceEeEEecC
Q 001228 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------IDIF-EAFDELLLLKRG 1083 (1119)
Q Consensus 1031 DEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~~~-~~~d~~l~l~~g 1083 (1119)
| ||+|||+.+.. +++. +.|.|+|++||... +.+. ...+.+..+..|
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 9 99999998652 3444 35899999999321 1122 234567777653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-22 Score=224.29 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=115.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|.|+|+++.++ ..+|++||++|++|++++|+||||||||||+++|+|.. +|.|
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I-------- 154 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV-------- 154 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE--------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE--------
Confidence 56677765442 24899999999999999999999999999999999975 3555
Q ss_pred hhhhcceEEEEccCCCCCCCCCHHH-HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 935 QETFARVSGYCEQNDIHSPYVTVYE-SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 935 ~~~~~~~~gy~~q~~~~~~~~tv~e-~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
++|++|++.++. .|++| |+.|.. +... .+++.++.+ |.+..+ +..|||||||
T Consensus 155 -------~~~v~q~~~lf~-~ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQ 207 (305)
T 2v9p_A 155 -------LSFANHKSHFWL-ASLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKH 207 (305)
T ss_dssp -------ECGGGTTSGGGG-GGGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSS
T ss_pred -------EEEecCcccccc-ccHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHH
Confidence 345677666554 35655 554421 1111 245556553 333222 2479999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
| ||||+++|+||| ||+||+.++..|+. ++|+++ ....+|++ +|. +|++++.|+.
T Consensus 208 R---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 208 K---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp C---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred H---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 9 999999999999 99999999988862 189875 45789999 886 5899988874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-20 Score=208.99 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCcc
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~ 974 (1119)
.+||+||||||||||+++|+|... +..|+|.++|.++.....++.++|++|++.+++.+||.|++.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH-
Confidence 489999999999999999999765 45799999998776555567899999999999999999999886533211 11
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 975 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.+ .+.+.++ ..+.+... ..||+|||||++|||+++. ++|||||++|||+.. .++++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 22233332 3699999999999999886 999999999999987 345556655
Q ss_pred CCCeEEEEecCcc
Q 001228 1055 TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1055 ~g~tvi~~~H~~~ 1067 (1119)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998743
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-19 Score=203.90 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=103.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+.... ..++.+++++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe-------------
Confidence 379999999999999999999999999999999997653 479999998642110 0112222221
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+ +||+||++||+||..+|++|+|||||+
T Consensus 224 ----------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+++.|+.+...+.|+|+|+|+++ ....+|++++|.+|
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 2356777776543458999999976 66789999999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=206.83 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=133.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---------ccceEEEeccCCC-CC
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-HH 257 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 257 (1119)
+++|+.+++|++++|+||||||||||++.|+|.+++. +|+|.++|.+..... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999876 899999998764321 1245999999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccC
Q 001228 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1119)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 337 (1119)
|.+||+|++.++... +. + ..+++.+|+.+..+..+++
T Consensus 225 p~~tv~e~l~~~~~~-~~---------------------d---------------------~~lldt~Gl~~~~~~~~~e 261 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY---------------------D---------------------VVLCDTSGRLHTNYSLMEE 261 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC---------------------S---------------------EEEEECCCCSSCCHHHHHH
T ss_pred hhhhHHHHHHHHHhC-CC---------------------H---------------------HHHHHhcCCChhhhhHHHH
Confidence 889999999875320 00 0 0134567887777777766
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc--------hhH
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PET 407 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~--illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~ 407 (1119)
|| |||++||++++.+|+ +|+|| ||+|||+..+. +.+.+..+.|+|+.+|-+. .-.
T Consensus 262 -----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 262 -----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp -----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred -----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 99 999999999999999 99999 99999987653 3444445788888877321 223
Q ss_pred HhhcCeEEEEcCCeE
Q 001228 408 YDLFDDIILLSEGQI 422 (1119)
Q Consensus 408 ~~~~D~i~lL~~G~i 422 (1119)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 345677888877753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-22 Score=215.19 Aligned_cols=177 Identities=11% Similarity=-0.014 Sum_probs=110.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----hhhcceEEEEccCCCCCCCCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gy~~q~~~~~~~~t 956 (1119)
.-|+||||+|++|++++|+||||||||||+++|+|... |.|.+ |.+... ...++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 36999999999999999999999999999999999652 56777 654311 123456899999765443222
Q ss_pred H-HHHHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCeEE
Q 001228 957 V-YESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI-----AVELVANPSIIF 1029 (1119)
Q Consensus 957 v-~e~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i-----A~aL~~~p~ill 1029 (1119)
. .+++. ...+..+ .... ...++++++...+. +.+ .+|||||+||++| +++++.+|++++
T Consensus 85 ~~~~~l~-~~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLE-YDNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEE-EEEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhh-hhhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 01110 0001111 0111 12356666654321 111 2589999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-------CCCeEEEEecCccHHHHHhhceEe
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
|||||+++|..+...|.+.+.+... .+.+.|+++|+++ +....+++++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 9999999999999999988887643 3566777777754 4555555554
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=190.72 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=68.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrq------rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+..||||||| |+++|++|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+|||++ ++...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCEE
Confidence 4579999999 67788888899999999999999999999999999999877789999999995 467889999
Q ss_pred eEEe
Q 001228 1078 LLLK 1081 (1119)
Q Consensus 1078 l~l~ 1081 (1119)
+.|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-19 Score=205.58 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=119.1
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCC-CCC
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~-~~~ 953 (1119)
+.+|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46788999999999999999999999999999754 2358999999876421 12 346899999988 888
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEe
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMD 1031 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLD 1031 (1119)
..|++|++.+... + ..+ ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999987532 1 111 12455667766655553 3689 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecC
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1065 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1065 (1119)
||+|||+.+.. +++. ..|.|+|++||.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999998653 3443 348999999993
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-19 Score=213.49 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=139.5
Q ss_pred ccccccccc-cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc---cCCh--------hh
Q 001228 870 MKTEGVGED-RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQ--------ET 937 (1119)
Q Consensus 870 ~~~~~~~~~-~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~---~~~~--------~~ 937 (1119)
.++..+.++ +..+|+++ |.|.+|++++|+|+||||||||+++|+|...+ ..|.|.++|. +... ..
T Consensus 134 ~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 134 RTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp SCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred EeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccc
Confidence 344444444 45699999 99999999999999999999999999997663 4799999997 3321 23
Q ss_pred hcceEEEEccC-CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHH
Q 001228 938 FARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016 (1119)
Q Consensus 938 ~~~~~gy~~q~-~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~ 1016 (1119)
.++.++|++|+ +..++.+++.+++.+.+....... -....+.+. ...||+|| ||++
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------------~~v~~~ld~------l~~lS~g~-qrvs 267 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------------QHVLLIMDS------LTRYAMAQ-REIA 267 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------------CEEEEEEEC------HHHHHHHH-HHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------------CCHHHHHHh------HHHHHHHH-HHHH
Confidence 56789999995 445667889998887654321000 000111122 24699999 9999
Q ss_pred HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1017 iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|| +.+|++ |+|||+.+...+.+++.++.+ + |. ||++++||++ ...+|++++|.+ |+++
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Iv 334 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIV 334 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEE
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEE
Confidence 99 889998 999999999999999999865 3 64 9999999986 456899999974 8999
Q ss_pred EecCC
Q 001228 1088 YAGPL 1092 (1119)
Q Consensus 1088 ~~g~~ 1092 (1119)
..|++
T Consensus 335 l~~~~ 339 (438)
T 2dpy_A 335 LSRRL 339 (438)
T ss_dssp ECHHH
T ss_pred EeCCH
Confidence 88764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=188.66 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 342 GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~---------~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
.+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++. .|+|++ +|+. + .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~-th~~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTG-TELA-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEE-SSCC-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEE-Eecc-c---cCC
Confidence 59999999999999999 8999999999999999999999999998752 455544 4443 3 899
Q ss_pred eEEEEcCCeEEEEcChhHH
Q 001228 413 DIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 413 ~i~lL~~G~iv~~G~~~~~ 431 (1119)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-20 Score=216.26 Aligned_cols=179 Identities=15% Similarity=0.126 Sum_probs=137.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc---cCCCC--------cccceEEEec
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEF--------VPQRTCAYIS 251 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~---~~~~~--------~~~~~~~yv~ 251 (1119)
...+|+++ +.+.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++ ..++.++|++
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 45699999 999999999999999999999999999999887 899999998 44332 1346899999
Q ss_pred cC-CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccc
Q 001228 252 QH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1119)
Q Consensus 252 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 330 (1119)
|+ +..++.+||.+|+.+.++.... .. .+ ++. .
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~---------------------v~~------~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QH---------------------VLL------I 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CE---------------------EEE------E
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CC---------------------HHH------H
Confidence 95 5567788999999875432100 00 00 000 0
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEEec
Q 001228 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH---ILDV-----TMIVALLQ 402 (1119)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~---~~~~-----t~ii~~~q 402 (1119)
.|. + ..+|||| |||+|| +++|++ |+|||+.+...+.+.++++.+ ..|. |+++..|+
T Consensus 253 ld~-l-----~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MDS-L-----TRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EEC-H-----HHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HHh-H-----HHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 111 1 2389999 999999 888887 999999999999999998765 2243 56665555
Q ss_pred CchhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001228 403 PAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 403 ~~~~~~~~~D~i~lL~~G~iv~~G~~~~~ 431 (1119)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 44 567999999999999999988765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-21 Score=207.08 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=105.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1119)
.-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.+...+ ++.++|++|++..|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4699999999999999999999999999999999987 3 78888 776543222 35689999987655443
Q ss_pred C-HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 261 T-VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 261 T-V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+ +.+++.+. ...+ ..|.. + ...++.+++...+ ..+.
T Consensus 84 ~~~~~~l~~~-~~~~--~~~g~--------------~------------------~~~i~~~l~~~~~-----~il~--- 120 (218)
T 1z6g_A 84 LKNEDFLEYD-NYAN--NFYGT--------------L------------------KSEYDKAKEQNKI-----CLFE--- 120 (218)
T ss_dssp HHTTCEEEEE-EETT--EEEEE--------------E------------------HHHHHHHHHTTCE-----EEEE---
T ss_pred hhccchhhhh-hccc--ccCCC--------------c------------------HHHHHHHHhCCCc-----EEEE---
Confidence 2 11111110 0000 00000 0 0012233333221 1111
Q ss_pred CCCCChHHHHHHHH-----HHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 340 RRGISGGQKKRVTT-----GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 340 ~rGLSGGqkkRvsi-----a~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++.... .| +.| ...||.|
T Consensus 121 -~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~~d~i 188 (218)
T 1z6g_A 121 -MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLNFNLS 188 (218)
T ss_dssp -ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSCCSEE
T ss_pred -ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccCCCEE
Confidence 2389999999999 88999999999999999999999999998888876543 22 111 2467887
Q ss_pred EEEcC
Q 001228 415 ILLSE 419 (1119)
Q Consensus 415 ~lL~~ 419 (1119)
+++++
T Consensus 189 iv~~~ 193 (218)
T 1z6g_A 189 IINDD 193 (218)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 77653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=188.46 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1006 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~---------~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 69999999999999999 8999999999999999999999999998863 799999994 3 2 7899
Q ss_pred EeEEecCcEEEEecCCC
Q 001228 1077 LLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1077 ~l~l~~gG~v~~~g~~~ 1093 (1119)
+++|.+ |+++..|+..
T Consensus 337 i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEET-TEEEECCCTT
T ss_pred EEEEEC-CEEEecCCHH
Confidence 999975 8999988764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7.6e-21 Score=202.35 Aligned_cols=184 Identities=10% Similarity=0.060 Sum_probs=113.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23322222222111 1235689999998888888888
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH------HHHcCCcccccccccC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV------LKILGLDICADTMVGD 337 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 337 (1119)
|++.+.....+....+... +. ++ ...++.. ++.+|+.+..+..++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----~~----------~~--------------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 134 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----AQ----------PV--------------RAAAATGVPVLIEVDLAGARAIKKTMPEA 134 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----HH----------HH--------------HHHHHHTCCEEEECCHHHHHHHHHHCTTS
T ss_pred CCceeehhhcCchhhcCCc----HH----------HH--------------HHHHHcCCeEEEEeCHHHHHHHHHhcCCc
Confidence 8764322111100000000 00 00 0011111 3344444444554443
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgL----Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
|| +|+.+|++++|||||+|+ |+..+..+.+.++++.+..+.|++++. |...++..+||+
T Consensus 135 -----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vt-Hdl~~~~~~~d~ 197 (207)
T 1znw_A 135 -----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVN-RRLESACAELVS 197 (207)
T ss_dssp -----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEEC-SSHHHHHHHHHH
T ss_pred -----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEEC-CCHHHHHHHHHH
Confidence 66 889999999999999998 788999999999998765577777765 556799999999
Q ss_pred EEEEc
Q 001228 414 IILLS 418 (1119)
Q Consensus 414 i~lL~ 418 (1119)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-18 Score=191.88 Aligned_cols=182 Identities=17% Similarity=0.156 Sum_probs=114.4
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+|+++++.+++|++++|+|+||||||||++.|+|.... ..| .+.+.+.+.....+++++.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 479999999999999999999999999999999985431 124 45443333333333333333333221 12223
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEeCCCC---
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1035 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq-rqrl~iA~aL~~~p~illLDEPts--- 1035 (1119)
++.... + ...+..+.++++++..++. +.+. +..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 1 1111222333443322221 1111 13588998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCcc-H--------------------HHHHhhceEeEEecC
Q 001228 1036 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQPS-I--------------------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1036 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~~-~--------------------~~~~~~d~~l~l~~g 1083 (1119)
+ +|. .....+++.|++++++ |+|||+++|+.. . .+...||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 565 6778899999998754 999999999951 1 356689999999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-19 Score=200.53 Aligned_cols=128 Identities=9% Similarity=0.010 Sum_probs=97.3
Q ss_pred ceEE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+|. .+++|++++|+||||||||||+++|+|.+++. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 3444 37899999999999999999999999999774 332 358999999999988 9999985
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
+... .+.... .+ .......++.++ ....++.+.. +||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACAPV-----YSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEEEE-----EETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCccc-----CChhh
Confidence 5211 111000 00 112345666676 4444566665 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCH
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDS 375 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs 375 (1119)
+|||++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=179.67 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=65.7
Q ss_pred CCCChHHHH------HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkk------Rvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..||||||| |+++|++++.+|++|||||||+|||+..+..+++.|+++... +.|++++.|+ +++.+.||++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCCEE
Confidence 349999999 677888889999999999999999999999999999998654 6788888776 4678999999
Q ss_pred EEEc
Q 001228 415 ILLS 418 (1119)
Q Consensus 415 ~lL~ 418 (1119)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-17 Score=188.03 Aligned_cols=187 Identities=14% Similarity=0.079 Sum_probs=114.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|.. .++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRV----RLR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTC----CGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCC----Chh
Confidence 345899999999999999999999999999999999998764 46 5655432221100001111111110 011
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+.+++... .+. ..+.....+.+++..++. .+...+
T Consensus 94 ~~~~l~~~--------------~~~------------------------~~~~~~~~~~~l~~~~l~--i~~~~~----- 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIE------------------------NGKFDQWFDELFGNDTFH--LYDSFA----- 128 (296)
T ss_dssp GCHHHHHH--------------HHH------------------------HTHHHHHHHHHHSSSCEE--EECCCC-----
T ss_pred hccccccC--------------CCC------------------------HHHHHHHHHHHhccCCEE--EECCCC-----
Confidence 11122110 000 000111223333322221 111112
Q ss_pred CCChHH-HHHHHHHHHHhcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEecC-ch-------
Q 001228 342 GISGGQ-KKRVTTGEMLVGTANVLYMDEIST---G---LDS-STTFQICKFLKQMVHILDVTMIVALLQP-AP------- 405 (1119)
Q Consensus 342 GLSGGq-kkRvsia~al~~~p~illlDEPts---g---LDs-~~~~~i~~~l~~~~~~~~~t~ii~~~q~-~~------- 405 (1119)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.|+|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 388888 67777 999999999999999999 5 555 6678899999999887788888887775 23
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 001228 406 -------------ETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 406 -------------~~~~~~D~i~lL~~G~i 422 (1119)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-18 Score=191.32 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=102.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+ +... ++ + . +.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~-------~~---~-~-----~~ 218 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVF-------KH---H-K-----NY 218 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCC-------SS---C-S-----SE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--cccc-------cc---c-h-----hE
Confidence 799999999999999999999999999999999999986 8999998853 1100 00 0 0 00
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+ + .+ .| |
T Consensus 219 i-----------------------------------------------------------~-------~~-----~g--g 225 (330)
T 2pt7_A 219 T-----------------------------------------------------------Q-------LF-----FG--G 225 (330)
T ss_dssp E-----------------------------------------------------------E-------EE-----CB--T
T ss_pred E-----------------------------------------------------------E-------EE-----eC--C
Confidence 0 0 00 01 8
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
||+||++||+||..+|++++|||||+. ++.+.|+.+.. .+.|+++++|.++ +.+.+|++++|.+|..
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566766643 2346888888765 7788999999988753
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-18 Score=216.86 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=117.9
Q ss_pred ceeeccceeeeeC-------CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEE-EEccCCCC
Q 001228 880 LQLLHSVSGVFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSG-YCEQNDIH 951 (1119)
Q Consensus 880 ~~vL~~vs~~i~~-------Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~g-y~~q~~~~ 951 (1119)
..+++||+|.+++ |++++|+|||||||||||++| |.... ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence 4699999999987 999999999999999999999 86430 12344 8998753
Q ss_pred CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 952 ~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
.++|.|++.. + +++.+.... +.+.+|+|+++ +++|++++.+|+++|||
T Consensus 828 --~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 828 --RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp --EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred --CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 3455444411 1 111111111 13468887775 99999999999999999
Q ss_pred CCCCCCCHHH-HHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE--EecCCCC-ChHHHHHHhhhh
Q 001228 1032 EPTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI--YAGPLGH-ESHKLIEYFEVS 1106 (1119)
Q Consensus 1032 EPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~--~~g~~~~-~~~~l~~~f~~~ 1106 (1119)
|||+|+|+.. ...++.+++.+.++ |+++|++||+++ .....+|++.++. |++. +.|+... ..+.+...|+ -
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~~--g~~~~~~~~~~~~~~~~~l~~ly~-l 951 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVRL--GHMACMVENECEDPSQETITFLYK-F 951 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEEE--EEEEEC-------------CEEEE-E
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceeec--CeEEEEEecCcccCCCCceEEEee-e
Confidence 9999999987 56688999999876 999999999964 3445678888763 6766 4444321 1223444455 4
Q ss_pred cCCCc
Q 001228 1107 IPFFP 1111 (1119)
Q Consensus 1107 i~g~~ 1111 (1119)
.+|++
T Consensus 952 ~~G~~ 956 (1022)
T 2o8b_B 952 IKGAC 956 (1022)
T ss_dssp ESSCC
T ss_pred cCCCC
Confidence 56654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-17 Score=182.60 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=104.3
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
..+++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3456999999999999999999999999999999999976 333333 1345799999985 677899
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
+.|++.+.......... + ..+.+ .....++. |.+..+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~~~---------------~~~~~L~~--l~~~~~~~~~~---- 116 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFDND---------------LMHRTLKN--IVEGKTVEVPT---- 116 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBCHH---------------HHHHHHHH--HHTTCCEEECC----
T ss_pred HhHhhhhhccCCCCCCc-c----------------cccHH---------------HHHHHHHH--HHCCCCeeccc----
Confidence 99998764332110000 0 00000 01122222 23445556655
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+|+||+||+.+ ++++.+|++++||||....|.. +.+ ..+.+++++.|......-.+++++ .+|+
T Consensus 117 -ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 117 -YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT---TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 99999999988 5788899999999998888763 122 236677776654322222334444 5564
Q ss_pred EEEEcChhHHHHH
Q 001228 422 IVYQGPRDNVLEF 434 (1119)
Q Consensus 422 iv~~G~~~~~~~~ 434 (1119)
+.+++.+.
T Consensus 181 -----~~e~~~~~ 188 (245)
T 2jeo_A 181 -----DLEQILTQ 188 (245)
T ss_dssp -----CHHHHHHH
T ss_pred -----CHHHHHHH
Confidence 55666543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-16 Score=192.25 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCC-ChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 341 RGI-SGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 341 rGL-SGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|+|++.|.| ++...||++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 347 999999999999999999 99999999999999999999999999976 67888888774 466789999999
Q ss_pred cCC
Q 001228 418 SEG 420 (1119)
Q Consensus 418 ~~G 420 (1119)
.+|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=155.72 Aligned_cols=76 Identities=22% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1004 VSGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA------~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||++ +....||++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEE
Confidence 457999999999876 899999999999999999999999999999999877799999999996 356789999
Q ss_pred eEEe
Q 001228 1078 LLLK 1081 (1119)
Q Consensus 1078 l~l~ 1081 (1119)
++|.
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-18 Score=196.32 Aligned_cols=156 Identities=10% Similarity=-0.003 Sum_probs=108.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhc
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL 969 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~ 969 (1119)
+++|+++||+||||||||||+++|+|...+ . +|. +.++|++|++.+++. |++|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--W------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--S------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--c------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 899999999999999999999999996542 1 121 358999999998888 99999854211
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001228 970 SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1119)
Q Consensus 970 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1049 (1119)
.+.......+.+.++++.++ .+..+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 147 -~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 147 -KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp -TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred -cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 11122222344677888877 44443332 3699999999999999999999999999999998521 112
Q ss_pred HHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1050 ~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.++. + .+|++.|+.+.......+|.+.+
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~ 242 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAM 242 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHH
Confidence 2322 3 34666776543333445565554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-17 Score=187.53 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=122.3
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC----------hhhhcceEEEEccC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----------QETFARVSGYCEQN 948 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----------~~~~~~~~gy~~q~ 948 (1119)
+..+|+++ |.|.+||++||+|+||||||||+++|+|...+ ..|.+.+.|.+.. ...+.+.+.++.|.
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~--~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA--DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC--CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 45699999 99999999999999999999999999997664 3688888886421 11234567788775
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+. +..+.+.-... ...+.+.+...+ .+.... ...+..||+|| ||+++| +.+|++
T Consensus 135 ~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~---ld~~~~lS~g~-r~v~la---l~~p~~- 188 (347)
T 2obl_A 135 DR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLM---MDSVTRYARAA-RDVGLA---SGEPDV- 188 (347)
T ss_dssp TS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEE---EETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred CC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHH---HhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence 42 22222211000 000111111111 010000 01134699999 899999 688887
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++.+ |+++.++++
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l 250 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL 250 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence 999999999999999999864 477 9999999986 356899999975 899988764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-17 Score=182.64 Aligned_cols=155 Identities=9% Similarity=-0.012 Sum_probs=97.8
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv 957 (1119)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3456999999999999999999999999999999999843 112222 2456799999985 6678899
Q ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001228 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1119)
Q Consensus 958 ~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgL 1037 (1119)
.|++.+........+. .....+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHP-DAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTSG-GGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCCc-ccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764322111111 111112234444433 2223333 24699999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001228 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1119)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999996
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6e-16 Score=196.08 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=104.0
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc--------CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--------GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~--------g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~ 950 (1119)
...+++||++.+++|++++|+|||||||||||++++ |..-+ ..+.. ++.+. .
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~---------------~~~~d---~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAE---------------VSIVD---C 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEE---------------EECCS---E
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--ccccc---------------chHHH---H
Confidence 346899999999999999999999999999999993 42111 11110 11000 0
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL--VANPSII 1028 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~il 1028 (1119)
++..+++. +.. ..++|++++++..+|+++ +.+|+++
T Consensus 708 ----------------------------------i~~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 ----------------------------------ILARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------------------------------HHHhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00011111 111 124788888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1029 FMDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
||||||+|+|+.....+ +.+++.+.+ .|+|+|++||+. ++...+|++..+.+ |++.+.++
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEec
Confidence 99999999999888777 677777775 499999999995 46678999988865 67766554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=176.19 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=94.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCee-EEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|.|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3899999 99999999999999999999999999654 33 689998886642 333321100
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+.+ +.+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~q-----------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VNQ-----------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EEE-----------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------eeH-----------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 000 0112210 123 899999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
++...+ ++. +..|.+|++++|+.+ ....+|+++.|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 333 356999999999975 456677765553
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-16 Score=195.22 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCChHHHHHHHHHHHH--hcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 341 RGISGGQKKRVTTGEML--VGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al--~~~p~illlDEPtsgLDs~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
+++|+|+++++.+|+++ +.+|+++|||||++|||+.....+ +..++.+.+..+.++++++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999988 999999999999999999998888 566677765457888888877 4677899999999
Q ss_pred cCCeEEEEcChhHH
Q 001228 418 SEGQIVYQGPRDNV 431 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1119)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=185.05 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=116.1
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhh
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 270 (1119)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 679999999999999999999999999998765 232 12455666531 01222110
Q ss_pred hhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHH
Q 001228 271 RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350 (1119)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkR 350 (1119)
+ .+. + .+. +...|+....+..+.+ |||||+||
T Consensus 330 ~--------------------~g~----~------------------~~~-~~~~g~~~~~~~~p~~-----LS~g~~q~ 361 (525)
T 1tf7_A 330 S--------------------WGM----D------------------FEE-MERQNLLKIVCAYPES-----AGLEDHLQ 361 (525)
T ss_dssp T--------------------TSC----C------------------HHH-HHHTTSEEECCCCGGG-----SCHHHHHH
T ss_pred H--------------------cCC----C------------------HHH-HHhCCCEEEEEecccc-----CCHHHHHH
Confidence 0 000 0 011 1235565555555554 99999999
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEecCc---------hhHHhhcCeEEE
Q 001228 351 VTTGEMLVGTANVLYMDEISTGLDSS-----TTFQICKFLKQMVHILDVTMIVALLQPA---------PETYDLFDDIIL 416 (1119)
Q Consensus 351 vsia~al~~~p~illlDEPtsgLDs~-----~~~~i~~~l~~~~~~~~~t~ii~~~q~~---------~~~~~~~D~i~l 416 (1119)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+++ .|.|++++.|... ..+..++|+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 89999999988765 5889999988862 456789999999
Q ss_pred EcCCe
Q 001228 417 LSEGQ 421 (1119)
Q Consensus 417 L~~G~ 421 (1119)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-17 Score=185.93 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=122.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC----------cccceEEEecc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------VPQRTCAYISQ 252 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~----------~~~~~~~yv~Q 252 (1119)
.+.+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999887 89999988652111 12356778887
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
.+. ...+.+.-... +..+ .++ ....|- +...
T Consensus 134 ~~~-----~~~~r~~~~~~----------------------------------~~~~--------ae~-~~~~~~-~vl~ 164 (347)
T 2obl_A 134 SDR-----PALERMKAAFT----------------------------------ATTI--------AEY-FRDQGK-NVLL 164 (347)
T ss_dssp TTS-----CHHHHHHHHHH----------------------------------HHHH--------HHH-HHTTTC-EEEE
T ss_pred CCC-----CHHHHHHHHHH----------------------------------HHHH--------HHH-HHhccc-cHHH
Confidence 542 22222211000 0000 000 000010 0000
Q ss_pred --ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEecCc
Q 001228 333 --TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-ILDV-----TMIVALLQPA 404 (1119)
Q Consensus 333 --t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~-~~~~-----t~ii~~~q~~ 404 (1119)
..+ ..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+ ..|. |+++..|...
T Consensus 165 ~ld~~-----~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 165 MMDSV-----TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp EEETH-----HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred HHhhH-----HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 112 2389999 899999 678876 999999999999999998764 3354 5555554433
Q ss_pred hhHHhhcCeEEEEcCCeEEEEcChhHH
Q 001228 405 PETYDLFDDIILLSEGQIVYQGPRDNV 431 (1119)
Q Consensus 405 ~~~~~~~D~i~lL~~G~iv~~G~~~~~ 431 (1119)
..+||++++|.+|+++..|+..++
T Consensus 230 ---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 ---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp ---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 567999999999999999987765
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=192.41 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=97.1
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHH
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+..+++|||+++++|++++|+|||||||||||+++++...... . |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-I------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-H------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-c------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 3569999999999999999999999999999999975311000 0 0000000 0011111 1111111111
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD 1038 (1119)
++ ... +.+.+|+||+|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~----------------------------------l~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DN----------------------------------IYK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HH----------------------------------HHH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 11 111 134699999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCCeEEEEecCccHHHHHhhceE
Q 001228 1039 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1039 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.....+. .+++.+.+ .|+|||++||+++ +.+.+|+.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 99888886 77777765 5999999999964 44555543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-16 Score=171.42 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=94.6
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcCC--CCCC---eeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~--~~~g---~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
|+.+- +.|++|++++|+||||||||||+++|+|. .+.+ ...+.+.+++.+... .+.+++++|...+.+. +
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-H
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-H
Confidence 44333 58999999999999999999999999983 3211 123467776643210 0112222232221111 1
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCeE
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST-EQRKRLTIAVELVA-------NPSII 1028 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~~-------~p~il 1028 (1119)
+ .+.+.+. ...+. .+++.+..+.+++. +|++|
T Consensus 90 ~----------------------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 90 V----------------------------LKHIYVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp H----------------------------HHTEEEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred H----------------------------hhcEEEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 1 2211110 01233 33444666666666 89999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccH---HHHHhhceEeEEecC
Q 001228 1029 FMDEPTSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1029 lLDEPtsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~~l~l~~g 1083 (1119)
+|||||+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|+++.|.++
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999999999984 2 2367777777754 49999999995431 255678999999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-16 Score=166.64 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=94.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC----CcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL----RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~----~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
+-+++|++++|+||||||||||+++|+|.+.+.. .-.|.|.+++.... ..+.++++.|...+++. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999544310 01345555553210 01123333333322222 3333322
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH-
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG- 346 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG- 346 (1119)
+. +..+++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 112333
Q ss_pred HHHHHHHHHHHhc-------CCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCc---
Q 001228 347 QKKRVTTGEMLVG-------TANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPA--- 404 (1119)
Q Consensus 347 qkkRvsia~al~~-------~p~illlDEPtsgLDs~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~--- 404 (1119)
+++.+..+.+++. +|+++++|||+++||+. . ..++++.|+++++..+.|+|++.|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 2333444544444 89999999999999983 1 236788888887777888888776432
Q ss_pred hhHHhhcCeEEEEcCCe
Q 001228 405 PETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 405 ~~~~~~~D~i~lL~~G~ 421 (1119)
..+...+|.++.|++|+
T Consensus 185 ~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 185 HILAHSATLRVYLRKGK 201 (231)
T ss_dssp -----CCSEEEEEEECT
T ss_pred hhhHhhceEEEEEEecC
Confidence 23678899999998753
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-16 Score=193.47 Aligned_cols=128 Identities=20% Similarity=0.136 Sum_probs=94.7
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
..+++||||+ |++++|+|||||||||||++|+|.... ...|.+. + . .+..+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p--a--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P--A--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S--S--SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e--h--hccceeeHHH---hhccCCHHH
Confidence 5699999999 999999999999999999999985310 0112211 1 1 1234677765 334445444
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEEEeCC---C
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1034 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~illLDEP---t 1034 (1119)
++. .++|+|+++++.+|+++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 14799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1035 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1035 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
++||..+. ..+.+.+++ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 467777766 4899999999853
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-16 Score=199.12 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=110.1
Q ss_pred ceeeeceEEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEE-EeccCCC
Q 001228 184 VRILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDL 255 (1119)
Q Consensus 184 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~-yv~Q~d~ 255 (1119)
..|++|+++.+++ |++++|+|||||||||||++| |.+.+. ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987420 1234 8998753
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
.+||.|++.. + +|+.+..+.-.
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~~~ 849 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMSGE 849 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhhch
Confidence 4566555410 0 11111111111
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..+|++++ ++++|++++.+|+++|||||++|+|+... ..++..|+.+++..+.++++++|.+ ..+..++|++
T Consensus 850 -----stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~ 922 (1022)
T 2o8b_B 850 -----STFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCS
T ss_pred -----hhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcc
Confidence 12566665 49999999999999999999999999885 4467888888765577888776654 4666789998
Q ss_pred EEEcCCeEE--EEcChh
Q 001228 415 ILLSEGQIV--YQGPRD 429 (1119)
Q Consensus 415 ~lL~~G~iv--~~G~~~ 429 (1119)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 556544
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-16 Score=176.92 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=84.5
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC-CCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~-~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~ 954 (1119)
.++++.++++++|.| +|+|+||||||||+++|+|. .. +.+| +.++|.+.......+.++|++|.+.....
T Consensus 7 ~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ 77 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLR 77 (301)
T ss_dssp -----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEE
T ss_pred eECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccC
Confidence 445667999999998 99999999999999999996 33 3456 77777655332223557999998877778
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+|+.|+.-++.... . .+.....+..+.+. .+.. ..++|+|||||+.+||+++ +|++||||
T Consensus 78 ltv~Dt~g~~~~~~-~----~e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 78 LTVVDTPGYGDAIN-C----RDCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp EEEEEEC----------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred cchhhhhhhhhhcC-c----HHHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 88888876643221 0 00000111111111 2233 2369999999999998885 99999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-CCeEEEEecCcc
Q 001228 1035 SG-LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1067 (1119)
Q Consensus 1035 sg-LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1067 (1119)
++ ||+... +.++++.+. +.++|++.||+.
T Consensus 138 ~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 85 999873 555665543 788999999963
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-14 Score=144.35 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHH------HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 341 RGISGGQKKRVTTG------EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 341 rGLSGGqkkRvsia------~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
..|||||||||+|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.|+|++.|++ ++.+.||++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~d~i 132 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHV 132 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGCSEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhCCEE
Confidence 34999999999876 8999999999999999999999999999999998653 78888888875 577899999
Q ss_pred EEE--cCCeE
Q 001228 415 ILL--SEGQI 422 (1119)
Q Consensus 415 ~lL--~~G~i 422 (1119)
++| .+|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-17 Score=175.09 Aligned_cols=145 Identities=14% Similarity=0.102 Sum_probs=110.8
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWL 967 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~--~~~tv~e~l~~~~~l 967 (1119)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.+. ..+++.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999985421 378999988765 5678988865421
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCeEEEeCCCCC-------
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1036 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq----rqrl~iA~aL~~~p~illLDEPtsg------- 1036 (1119)
. .......+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 D----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp T----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred C----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1 11111123466777888776655443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCCeEEEEecCc
Q 001228 1037 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1066 (1119)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-17 Score=170.98 Aligned_cols=145 Identities=17% Similarity=0.108 Sum_probs=107.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCC--CCCCHHHHHHHhhh
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 271 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 271 (1119)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 478999999999999999999999998743 379999998776 56899998765321
Q ss_pred hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH----
Q 001228 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ---- 347 (1119)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq---- 347 (1119)
.. + . .........++.+++.+..+..+.+ +|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~-----~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMPVYD-----FRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEECCEE-----TTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCCccc-----CcccCCCCC
Confidence 00 0 0 0011233456667776655555544 88886
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTG-------LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsg-------LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
+||+++|++++.+|.++++||||++ ||+.....+.+.+++.....|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999998887654457777666665
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-15 Score=165.56 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=96.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
++|+|+| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++. |++|+...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~-------- 73 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKS-------- 73 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSS--------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCcce--------
Confidence 4899999 8999999999999999999999999998762 2799999887642 33332100
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
+ .. + +.+|++. ..+
T Consensus 74 ---~---v~--------------------------------------q----------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 74 ---I---VN--------------------------------------Q----------REVGEDT-----------KSF- 87 (261)
T ss_dssp ---E---EE--------------------------------------E----------EEBTTTB-----------SCH-
T ss_pred ---e---ee--------------------------------------H----------HHhCCCH-----------HHH-
Confidence 0 00 0 0112211 012
Q ss_pred hHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 345 GGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|++||++|..+|+++++|||| |+.+...+++ . +. .|.++++++|.+. ....+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 9988665443 2 22 4788888888754 6788999988854
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-15 Score=187.62 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=99.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
..+++|++++ ++|++++|+|||||||||||++|+|....+. .|...... ...++++.| +++.+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-------~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-------IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-------TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-------cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4689999999 9999999999999999999999998421000 11111111 123555544 333444444
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++..+ .+.+|+|+++ +..+...+.+|+++|||||++|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43210 1246777765 4445556899999999999999999
Q ss_pred HHHHHH-HHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1040 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1040 ~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
.....+ +.+++.+.+ .|+++|++||+++ +...+|++..+.+ |++.
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n-~~~~ 748 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVAN-VHLD 748 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEE-EEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEE-EEEE
Confidence 766654 788888877 4999999999974 4556777654543 4443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-15 Score=170.78 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---------cceEEEeccCCCCCCCCCHHHHH
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
+|++++|+||||||||||++.|+|.+++. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999886 8999999988653221 24589999999888889999999
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
.++... +. + ..+++..|+.+..+.. ++..
T Consensus 178 ~~~~~~-~~---------------------d---------------------~~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY---------------------D---------------------LLFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHHH-TC---------------------S---------------------EEEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHhC-CC---------------------C---------------------EEEecCCCCCCchHHH--------HHHH
Confidence 764210 00 0 0012223333222222 3556
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.|+|+..|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 69999999999999994444 45555555666777777665678888888754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-15 Score=170.81 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh--cceEEEEccCCCCCCCCCHHHHHH
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF--ARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~--~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
+|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... .+ ++.++|++|++...|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 7999999999999999999999996543 368899999875321 11 245899999998888889999987
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+... + ..+. .+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~-~~d~----------~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-R-GYDL----------LFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-H-TCSE----------EEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-C-CCCE----------EEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 6421 1 0000 11222333222221 1455668999999999999994433 3444444
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCc
Q 001228 1043 AIVMRTVRNTVDT-GRTVVCTIHQP 1066 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1066 (1119)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4555666666543 89999999973
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-15 Score=174.57 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=101.3
Q ss_pred eeece-EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCC-CCcceE-EEECCccCCCCcccceEEEeccCCCCCCCC
Q 001228 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKD-LRASGK-ITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 186 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~--~~~-~~~~G~-I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1119)
.|+++ +|.+++|++++|+||||||||||++.|++.. +|+ ....|+ |.+++.+. + ..+.++|++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999987 443 011367 77877543 1 12345566665444333
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
++.||+.+....
T Consensus 195 ~v~~ni~~~~~~-------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 EVLKHIYVARAF-------------------------------------------------------------------- 206 (349)
T ss_dssp HHGGGEEEEECC--------------------------------------------------------------------
T ss_pred HHhhCEEEEecC--------------------------------------------------------------------
Confidence 444444321100
Q ss_pred CCCChHHHHHHHHHHHHh-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 341 RGISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~-------~~p~illlDEPtsgLDs~~------------~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+++++..+.|+|++.|
T Consensus 207 --~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 --NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp --SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred --ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 1344555555555555 7899999999999999852 356677788888777788887766
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 402 QPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 402 q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
... +....|++......|+++.++.
T Consensus 285 ~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 285 VQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp CC----------------CCCCCTTC
T ss_pred ccc-ccccccCCccccCCcceEeecC
Confidence 543 4444555666667777665544
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-14 Score=167.20 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
.||||||||++||++|+ .+|+++|||||+++||+..+..+.+.|+++.. .+.++|++.|+ .+....||+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEEE
Confidence 38999999999999999 68999999999999999999999999998753 25677777776 4678899999999
Q ss_pred c
Q 001228 418 S 418 (1119)
Q Consensus 418 ~ 418 (1119)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-15 Score=175.22 Aligned_cols=143 Identities=20% Similarity=0.149 Sum_probs=95.5
Q ss_pred eeccc-eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC--CC--CeeEEE-EEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSV-SGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYIEGD-IKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~v-s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~--~~--g~~~G~-i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
.|+.+ .+.|++|++++|+||||||||||++.|++.. .+ |...|. |++++.+.. .++++++++|...+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45665 5899999999999999999999999999853 21 111356 888876531 11234444544332211
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCeE
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-------ANPSII 1028 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-------~~p~il 1028 (1119)
++.||+.+ ... .-|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~-------------------------------~~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYV-------------------------------ARA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEE-------------------------------EEC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEE-------------------------------Eec--------CChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 22221111 000 02567888888888888 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCcc
Q 001228 1029 FMDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1029 lLDEPtsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~ 1067 (1119)
++||||+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999999999862 3556666677654 4899999999854
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=181.69 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=97.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..|++|||+.+++|++++|+|||||||||||+++++..-.. ..|. +.+.. .+.++..+.++..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccch-hhhhhHHHHHHHhCChH
Confidence 56899999999999999999999999999999998642110 0110 00110 01111111122222222
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
+++ ...+ ..+
T Consensus 727 d~l-----------------------------------------------------------------~~~~-----stf 736 (918)
T 3thx_B 727 DNI-----------------------------------------------------------------YKGR-----STF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHH-----------------------------------------------------------------HHhH-----HHh
Confidence 221 1111 238
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
|+|++|++.|+++ +.+|+++|||||++|||+.....+. ..++.+++..+.|+++++|.+ ++.+++|+.
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 9999999999998 8999999999999999999999987 677777665678888888764 455666654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-14 Score=156.09 Aligned_cols=151 Identities=19% Similarity=0.129 Sum_probs=101.0
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
.+++|++++|+||||||||||+..|++... .|.+ +.|.+... ...+.|+..++. ..+.......+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~------~~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDP------PTAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSC------HHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCC------HHHHHHHHHHHH
Confidence 589999999999999999999999997432 2333 23433211 234667665442 111111111111
Q ss_pred cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHH---HH
Q 001228 969 LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARA---AA 1043 (1119)
Q Consensus 969 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPts--gLD~~~---~~ 1043 (1119)
. +... ....++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677888877765554 456999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-hCCCeEEEEecCcc
Q 001228 1044 IVMRTVRNTV-DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1044 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1067 (1119)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999854
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-15 Score=171.81 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=78.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-cCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~-~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
++.+++++++.| +|+||||||||||++.|+|. +.+. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 6664 78 8888876643222345799999988888899
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|.||..|+..... .+. .....+++. +..+..+ +
T Consensus 80 v~Dt~g~~~~~~~-------------~e~-----------------------~~~l~~~l~------~~~~~~~-----~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC-----------------------FKTIISYID------EQFERYL-----H 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHH------HHHHHHH-----H
T ss_pred hhhhhhhhhhcCc-------------HHH-----------------------HHHHHHHHH------HHHHHHH-----H
Confidence 9999877432100 000 000111111 1122333 3
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALL 401 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsg-LDs~~~~~i~~~l~~~~~~~~~t~ii~~~ 401 (1119)
++|||||||+.+|++++ ++++||||++ ||+... +.++++....+.++|++-|
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~ 165 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKA 165 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeC
Confidence 39999999999888875 9999999985 999863 5555554333444444443
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=181.69 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=98.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4689999999 99999999999999999999999753 32 45431 1 11245777776 4555666
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.|++. .|
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 66652 23
Q ss_pred CChHHHHHHHHHHHH--hcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEecCchhHHhhc
Q 001228 343 ISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1119)
Q Consensus 343 LSGGqkkRvsia~al--~~~p~illlDEP---tsgLDs~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 411 (1119)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.|+++++|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 568888775 367888887764 444444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-15 Score=157.06 Aligned_cols=167 Identities=14% Similarity=0.137 Sum_probs=105.2
Q ss_pred eeecccee-eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcc---eEEEEccCCCCCCCCC
Q 001228 881 QLLHSVSG-VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR---VSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 881 ~vL~~vs~-~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~---~~gy~~q~~~~~~~~t 956 (1119)
..|+++.+ .+++|++++|+||||||||||++.|++... ...|.+.+.+.+.....+.+ ..++.+|..... .
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 84 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K-- 84 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T--
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C--
Confidence 46888886 899999999999999999999999997432 11234444333222111110 011111100000 0
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1034 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPt 1034 (1119)
+ .. ++.....++ .... ....|.++.++...+.+...+|+ +|++||||
T Consensus 85 ----~------~~------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 85 ----L------II------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ----E------EE------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ----E------EE------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0 00 000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCcc-------HHHHHhhceEeEEecC
Q 001228 1035 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1035 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~~l~l~~g 1083 (1119)
+++ |+.....+++.|+++++ .|+|||+++|+.. ..+...||++++|.+.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99989999999999864 5999999999862 1266779999999753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-13 Score=149.07 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHHhcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCc-------hhHHhhc
Q 001228 343 ISGGQKKRVTTGEMLVGTAN--VLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLF 411 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~--illlDEPtsgL--Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~-------~~~~~~~ 411 (1119)
.|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++..+.|++++.|... +.+.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 58999988888877778999 99999999888 9988999999999998777888888777652 4588899
Q ss_pred CeEEEEcCC
Q 001228 412 DDIILLSEG 420 (1119)
Q Consensus 412 D~i~lL~~G 420 (1119)
|+|++|...
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-14 Score=165.76 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=84.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
+|+++ ...+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......++++|....
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~---------- 179 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVH---------- 179 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBT----------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeec----------
Confidence 45544 67889999999999999999999999965311 12444332222211 011112222222110
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
...++..+ +||++|..+|++|++|||| |.++
T Consensus 180 ------------------------------------------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 180 ------------------------------------------RDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------------------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------------------------------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 01123322 8999999999999999999 6666
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
... +.+.+.+|.|||+|+|+.+. ...+||++.|.
T Consensus 211 ~~~----~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRL----ALTAAETGHLVFGTLHTTSA--AKTIDRVVDVF 244 (356)
T ss_dssp HHH----HHHHHHTTCEEEEEESCSSH--HHHHHHHHHTS
T ss_pred HHH----HHHHHhcCCEEEEEEccChH--HHHHHHHhhhc
Confidence 444 34446679999999999863 37788887774
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-16 Score=164.83 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=102.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 275 (1119)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999987 5 78 888887664322 356799999974 111 1111 01000
Q ss_pred CchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccCccCCCCChHHHHHHH-H
Q 001228 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVT-T 353 (1119)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~rGLSGGqkkRvs-i 353 (1119)
+.+. ..+..+|. ....+|||||+++. +
T Consensus 67 --------------------------------------------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 67 --------------------------------------------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp --------------------------------------------------CCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred --------------------------------------------------cCCccccccccce-EEEcchHHHHHHHHHH
Confidence 0000 01123442 22348999999884 3
Q ss_pred HH---HHhcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEecCchhHHhhcCeEEEEcCCeEEEE
Q 001228 354 GE---MLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIV---ALLQPAPETYDLFDDIILLSEGQIVYQ 425 (1119)
Q Consensus 354 a~---al~~~p~illlDE--PtsgLDs~~~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~i~lL~~G~iv~~ 425 (1119)
++ |+..+|++++||| |+..+|......+.+.++. ..++|+ ++.|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-----~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-----PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-----SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-----CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 8988998765555555542 345553 3323322 356788888888888764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=150.97 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=102.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
-+++|++++|+||||||||||++.|++.+. .|.+ +.|.+.. ....+.|+..++. .. .+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~~-~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------PT-AIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------HH-HHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------HH-HHH--HHH
Confidence 589999999999999999999999998653 4555 3344321 1346888876542 21 110 000
Q ss_pred cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHH
Q 001228 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (1119)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvs 352 (1119)
.. + +... .....+.+++.+++.+..+..+.. +|+||++++
T Consensus 88 ~~----------~-------g~~~-----------------~~~~~~~~~~~l~l~~~~~~~~~~-----ls~g~~~~i- 127 (279)
T 1nlf_A 88 HA----------L-------GAHL-----------------SAEERQAVADGLLIQPLIGSLPNI-----MAPEWFDGL- 127 (279)
T ss_dssp HH----------H-------HTTS-----------------CHHHHHHHHHHEEECCCTTSCCCT-----TSHHHHHHH-
T ss_pred HH----------H-------Hhhc-----------------ChhhhhhccCceEEeecCCCCccc-----CCHHHHHHH-
Confidence 00 0 0000 001234466777877766665554 999998876
Q ss_pred HHHHHhcCCcEeEEeCCCC--CCCHHH---HHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 353 TGEMLVGTANVLYMDEIST--GLDSST---TFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 353 ia~al~~~p~illlDEPts--gLDs~~---~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
++++.+|+++++||||+ ++|... ..++++.|+++++..+.|+|++.|..
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 999744 47888999998876788888876654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-15 Score=185.46 Aligned_cols=165 Identities=18% Similarity=0.237 Sum_probs=105.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC-CCCcceEEEECCccCC------CCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELN------EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~~-~~~~~G~I~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
++|+|||||||||||++|+|...| + +|.|+++|.++. ....++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999866 4 899999998752 122456899999999999999999999875332
Q ss_pred cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHH
Q 001228 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (1119)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvs 352 (1119)
.+.. + .++| ++++.
T Consensus 125 ~~~~-------------------------------------------------~--------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE-------------------------------------------------G--------------MGIS---HELIT 138 (608)
T ss_dssp HHCS-------------------------------------------------S--------------SCCC---SCCEE
T ss_pred hcCC-------------------------------------------------c--------------cccc---hHHHH
Confidence 1100 0 0011 11111
Q ss_pred HHHHHhcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch----h---HHhhc-----CeE
Q 001228 353 TGEMLVGTANVLYMDEI------STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP----E---TYDLF-----DDI 414 (1119)
Q Consensus 353 ia~al~~~p~illlDEP------tsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~---~~~~~-----D~i 414 (1119)
++.+....|+++|+||| |+|||+....++.+.++++.......+++.+.|... + +.+.. ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222347999999999 999999999999999999754333334444443322 2 22222 457
Q ss_pred EEEcCCeEEEEcChhHHHH
Q 001228 415 ILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1119)
+++.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8889988888887655443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-15 Score=156.66 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=100.0
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~ 971 (1119)
|++++|+||||||||||+++|+|... .+| |.++|.+..+ ...++.+||++|+.. ... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccc--
Confidence 78999999999999999999999653 246 7777766533 234678999999751 111 111 00000
Q ss_pred CccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHH
Q 001228 972 DVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAI 1044 (1119)
Q Consensus 972 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl-~iA~---aL~~~p~illLDE--PtsgLD~~~~~~ 1044 (1119)
...+ ..+..++.. ...+|+|||+++ ++++ |++.+|+|||||| |+..+|....+.
T Consensus 67 ------------------~~~~~~~~~~v~~~-~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQY-VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSS-EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceE-EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 001122222 235999999988 4454 5789999999999 899999986655
Q ss_pred HHHHHHHHHhCCCeEEE----EecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1045 VMRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
+.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~ 170 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTK 170 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCS
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeCh
Confidence 555554 4445553 3498542 3456666654 578877554
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-14 Score=177.47 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=104.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+++|+|+. ++|++++|+|||||||||||++|+|..... ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964211 012 11111 1134566555 45555666
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
|++... + ..+
T Consensus 661 d~l~~~---------------------------------------------------------~-------------stf 670 (800)
T 1wb9_A 661 DDLASG---------------------------------------------------------R-------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh---------------------------------------------------------h-------------hhh
Confidence 665321 0 115
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
|+|+++ ++.+...+.+|+++|||||++|+|+.....+ +..++.+.+..+.++++++|.+ +..+++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEE
Confidence 666654 4444556899999999999999999777665 6777777664578888888875 45578888777777877
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.2e-15 Score=155.29 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=91.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC---CCeeEEEEEECCcc-C-ChhhhcceEEEEccCCCCCCCCC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYP-K-NQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~---~g~~~G~i~i~g~~-~-~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++ +.+.+|++++|+|+||||||||++.|+|... ..+..|.+.+.+.- . ....+....|+..+ ..+...
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~ 91 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA---EVPEEM 91 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC---------CC
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCccc---ccCHHH
Confidence 6777 8899999999999999999999999999651 01223433221100 0 00000000111000 000000
Q ss_pred ---HHHHHHHHHHh-hc--------CCCccHHHHHHHHHHHHHHcCCCCcc-ccccCCCCCCCCCHHHHHH-HHHHHHHh
Q 001228 957 ---VYESLLYSAWL-RL--------SSDVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKR-LTIAVELV 1022 (1119)
Q Consensus 957 ---v~e~l~~~~~l-~~--------~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqr-l~iA~aL~ 1022 (1119)
.+..+...... +. .........+..+.+.++..++..+. ... ...+|+||||| +..+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK-----~D~~s~~~~~~~~~~~~~~~ 166 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK-----ADKLASGARKAQLNMVREAV 166 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC-----GGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec-----ccCCCchhHHHHHHHHHHHH
Confidence 01111111100 00 00000011122344556666654321 222 24589999999 89999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1058 (1119)
.+|+++++|||||++|..+...+++.|.++..+|.|
T Consensus 167 ~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 167 LAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp GGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999998765544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-14 Score=176.65 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=95.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC------hhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN------QETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~------~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
++++. +||+|+|||||||||++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+++..||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 45544 999999999999999999998643 14799999997631 234667899999999999999999999
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC------CC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP------TS 1035 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP------ts 1035 (1119)
.+......... . ++| ++++.++.+...+|+++|+||| |+
T Consensus 119 ~~~~~~~~~~~-------------------~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAGEG-------------------M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHCSS-------------------S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcCCc-------------------c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 77532211000 0 011 0112222233458999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CCeEEEEecCcc
Q 001228 1036 GLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS 1067 (1119)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~ 1067 (1119)
|||+.....+.++++++..+ +.++++++|+.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999999999997543 677888999875
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-14 Score=166.31 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=112.2
Q ss_pred ccccceeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP 953 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~ 953 (1119)
++++.. |++||+++++|++ +||+|+||||||||+++|+|..- .|.. +... .....++.++|++|++.+++
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~ 95 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRL 95 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEE
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCcccc
Confidence 344455 9999999999999 99999999999999999999742 1211 1110 11123457999999988888
Q ss_pred CCCHHHHHHHHHHhhcC--CCccHHHHHHHHHHHHHHc-CCC----Cccccc----cC--CCCCCCCCHHHHHHHHHHHH
Q 001228 954 YVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELV-ELK----SLNDSM----VG--LPGVSGLSTEQRKRLTIAVE 1020 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~--~~~~~~~~~~~~~~~l~~~-~l~----~~~~~~----~~--~~~~~~LS~Gqrqrl~iA~a 1020 (1119)
.+||.|++.|+...... ...-.........++++.. ++. ...|.. +. .+...+|+..+ +.|+++
T Consensus 96 ~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~ 172 (427)
T 2qag_B 96 KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKK 172 (427)
T ss_dssp EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHH
T ss_pred ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHH
Confidence 88999988664321000 0000011223344555554 432 112221 11 11123577666 789999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q 001228 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1065 (1119)
Q Consensus 1021 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1065 (1119)
|..+++||++|||+..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999987 77779999988864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-13 Score=135.43 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeE
Q 001228 1004 VSGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL~~----~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+. .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 35799999999999999974 4699999999999999999999999999864 57899999985 46788999986
Q ss_pred Ee-cCcE
Q 001228 1080 LK-RGGR 1085 (1119)
Q Consensus 1080 l~-~gG~ 1085 (1119)
+. .+|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 53 3444
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-14 Score=167.78 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=90.0
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
++++.+++|+||+| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+...+.+|
T Consensus 21 y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Lt 91 (418)
T 2qag_C 21 VYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLT 91 (418)
T ss_dssp TTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEE
T ss_pred ECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCccccee
Confidence 34456999999998 999999999999999999965411112222222211 112356899999888888889
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC---eEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~---illLDEP 1033 (1119)
+.|++.+...... ... ...+.+.+ +. .++.+++||++|||+++.+|+ +|++|||
T Consensus 92 v~Dt~g~~~~~~~------~~~---~~~i~~~i------~~--------~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 92 IVDTPGFGDAVDN------SNC---WQPVIDYI------DS--------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp EEECC--------------------CHHHHHHH------HH--------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred eeechhhhhhccc------hhh---HHHHHHHH------HH--------HHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 9998877543210 000 11111111 11 256677889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1034 T-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1034 t-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
| .|||+... ++++.+. .+.+||+++|..+
T Consensus 149 t~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp -CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 9 69998874 3444444 3788888888643
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-13 Score=160.55 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1005 SGL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1005 ~~L-S~Gqrqrl~iA~aL~~~p--~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
..| |||||||++||++|+.+| ++|||||||+|||+.+...|.+.|+++++ |+|||+|||+++ +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999987 899999999964 566799999996
Q ss_pred c
Q 001228 1082 R 1082 (1119)
Q Consensus 1082 ~ 1082 (1119)
+
T Consensus 472 ~ 472 (517)
T 4ad8_A 472 K 472 (517)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=131.86 Aligned_cols=153 Identities=19% Similarity=0.137 Sum_probs=98.3
Q ss_pred eeccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+.+.++... . .+.. .
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~~-~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSPE-R 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCHH-H
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCHH-H
Confidence 577777 4899999999999999999999999998 221 2233433221 0 1111 1
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCeEEEeCCCCCC
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1037 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~iA~aL~~~-p~illLDEPtsgL 1037 (1119)
+.- .... ..... +++++.+.+ ..++++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 122222211 123333 46788999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CCeEEEEecCccH------------HHHHhhceEeEEecC
Q 001228 1038 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1038 D~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~~l~l~~g 1083 (1119)
|+.. ...+++.|++++++ |+|||+++|.... .+...+|.+++|.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9732 24466667777644 8999999997541 356679999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=127.25 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCCChHHHHHHHHHHHHh----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~----~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.++|++.|+ ..+.+.+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~--~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLR--DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEec--HHHHHhCCEEEE
Confidence 349999999999999996 56799999999999999999999999998864 4566666665 367899999997
Q ss_pred Ec--CCeE-EEEcChhHHHH
Q 001228 417 LS--EGQI-VYQGPRDNVLE 433 (1119)
Q Consensus 417 L~--~G~i-v~~G~~~~~~~ 433 (1119)
+. +|.. +.....++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6654 44455555443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-14 Score=151.22 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=84.1
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCH----HHHHHHH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV----YESLLYS 964 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv----~e~l~~~ 964 (1119)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+... ..++.++|++|++..++.+++ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~- 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV- 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE-
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHHH-
Confidence 46899999999999999999999999975421367889888876532 234568899986543222221 111000
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 965 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
..... +.| ++. +.+++..++++||| ||+.++..
T Consensus 90 ------------------------------~~~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 90 ------------------------------FGNYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp ------------------------------TTEEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred ------------------------------HhccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 00000 112 221 44566678999999 99999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCcc
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+++.+. ++.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=135.94 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=59.8
Q ss_pred CChHH--HHHHHHHHHHhcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHHHhCCcEEEEEEecCch------
Q 001228 343 ISGGQ--KKRVTTGEMLVGT-ANVLYMDEISTGLDSS--------TTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (1119)
Q Consensus 343 LSGGq--kkRvsia~al~~~-p~illlDEPtsgLDs~--------~~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 405 (1119)
.|+++ ++++..+++++.+ |+++++|||++++|+. ...++++.|+++++..+.|++++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45553 6688888899986 9999999999999973 23556777888887778888877665431
Q ss_pred ------hHHhhcCeEEEEcCC
Q 001228 406 ------ETYDLFDDIILLSEG 420 (1119)
Q Consensus 406 ------~~~~~~D~i~lL~~G 420 (1119)
.+.+.+|.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-13 Score=156.48 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=86.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|+.|++.+++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 456999999998 99999999999999999998764311 2222222111 1112468999999888888999
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.||+.|....... + .. ....+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-------------~---------~~--------------~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-------------N---------CW--------------QPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC---------------------------------C--------------HHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-------------h---------hH--------------HHHHHHH-H-----------------HH
Confidence 9998774321100 0 00 0001111 0 12
Q ss_pred CChHHHHHHHHHHHHhcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEec
Q 001228 343 ISGGQKKRVTTGEMLVGTAN---VLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~---illlDEPt-sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q 402 (1119)
++.++++|++||++++.+|+ ++++|||| .|||+... ..++.+.. +.++|++++.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 56677889999999999999 99999999 69998763 33444432 5667766654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-13 Score=154.10 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=45.0
Q ss_pred HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 352 sia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.++++++|... . .+.+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~vl~t~H~~~-~-~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHLVFGTLHTTS-A-AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCEEEEEESCSS-H-HHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCEEEEEEccCh-H-HHHHHHHhhhcCc
Confidence 8999999999999999999 7666444443 333 4788888887765 3 3889999988654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-14 Score=147.85 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=88.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhh
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 271 (1119)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... .++.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3678999999999999999999999998 33 799999997653221 1234677777543 35788888876432
Q ss_pred hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc--cccccCccCCCCChHHHH
Q 001228 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA--DTMVGDEMRRGISGGQKK 349 (1119)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~--dt~vg~~~~rGLSGGqkk 349 (1119)
... . .+. ...++.++..++++... +..+. .+|+|++|
T Consensus 78 ~~~------------~----~~~--------------------~~~~~~~~~~~~l~~~~~~~~~~~-----~ls~~~~~ 116 (191)
T 1zp6_A 78 RYA------------K----EGY--------------------FVILDGVVRPDWLPAFTALARPLH-----YIVLRTTA 116 (191)
T ss_dssp HHH------------H----TSC--------------------EEEECSCCCTTTTHHHHTTCSCEE-----EEEEECCH
T ss_pred HHh------------c----cCC--------------------eEEEeccCcHHHHHHHHhcCCCeE-----EEEecCCH
Confidence 110 0 000 00000001111121111 12222 39999999
Q ss_pred HHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 350 Rvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
|+.++|++..+|+++ +|+.....+.+.++.
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999999876 688766666665544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-13 Score=147.01 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH----HHHHHH
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV----RETLDF 268 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 268 (1119)
..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56899999999999999999999999998752 3589999988765432 23458899996554443333 222211
Q ss_pred hhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHH
Q 001228 269 SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (1119)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqk 348 (1119)
. |+ +.|-.+
T Consensus 90 ~------------------------------------------------------------------~~-----~yg~~~ 98 (219)
T 1s96_A 90 F------------------------------------------------------------------GN-----YYGTSR 98 (219)
T ss_dssp T------------------------------------------------------------------TE-----EEEEEH
T ss_pred H------------------------------------------------------------------hc-----cCCCCH
Confidence 1 10 111112
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcCh
Q 001228 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (1119)
Q Consensus 349 kRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~ 428 (1119)
++ .+.++..++++||| ||+.++.++.+.+. .+.|++++.|++ .++.+ ++ +..| .++.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCH
Confidence 21 23444557999999 99999999998876 256666665543 23332 43 6777 6788
Q ss_pred hHHHHHHH
Q 001228 429 DNVLEFFE 436 (1119)
Q Consensus 429 ~~~~~~f~ 436 (1119)
+++...+.
T Consensus 156 e~i~~rl~ 163 (219)
T 1s96_A 156 EVIAKRMA 163 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.7e-15 Score=152.57 Aligned_cols=154 Identities=13% Similarity=0.012 Sum_probs=92.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCCCCHHHHHHHHHHh
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l 967 (1119)
.+++|++++|+|+||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..++.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 368999999999999999999999999743 57889988653211 11233566766543 356788888664422
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~ 1047 (1119)
....... ..++.++..+++..+... +. .+..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1100000 000000011111111100 00 12359999999999999999999987 68888877777
Q ss_pred HHHHHHhCCCeEEEEec
Q 001228 1048 TVRNTVDTGRTVVCTIH 1064 (1119)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H 1064 (1119)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665432333444443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-15 Score=172.04 Aligned_cols=163 Identities=17% Similarity=0.090 Sum_probs=95.3
Q ss_pred eeeceEEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcc----eEEEEC----CccCCCCccc--ceEEEeccC
Q 001228 186 ILKDVSGIVKP--SRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS----GKITYC----GHELNEFVPQ--RTCAYISQH 253 (1119)
Q Consensus 186 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~----G~I~~~----G~~~~~~~~~--~~~~yv~Q~ 253 (1119)
+.+.|+..|++ |+.++|+||||||||||+++|+|.+++. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 45689999999 9999999999999999999999999885 6 766653 2221 00000 112222221
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc
Q 001228 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1119)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 333 (1119)
...+ ..|++||+.| +..+..++
T Consensus 233 ~~~~-~~t~~~nl~~---------------------------------------------------------~~~~~~~~ 254 (365)
T 1lw7_A 233 YIDY-AVRHSHKIAF---------------------------------------------------------IDTDFITT 254 (365)
T ss_dssp HHHH-HHHHCSSEEE---------------------------------------------------------ESSCHHHH
T ss_pred HHHH-HHhccCCEEE---------------------------------------------------------EeCCchHH
Confidence 1000 0011111100 00000111
Q ss_pred cccCccCCCCChHHHHHHHHHHHHh-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecC
Q 001228 334 MVGDEMRRGISGGQKKRVTTGEMLV-GTANVLYMDE---IS------TGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 334 ~vg~~~~rGLSGGqkkRvsia~al~-~~p~illlDE---Pt------sgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
.+- .+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. +|
T Consensus 255 ~~~-----~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~ 328 (365)
T 1lw7_A 255 QAF-----CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP 328 (365)
T ss_dssp HHH-----HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS
T ss_pred HHH-----HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC
Confidence 111 15677788888887775 5899999999 65 588999999999999887654466666654 44
Q ss_pred chhHHhhcCeEEEE
Q 001228 404 APETYDLFDDIILL 417 (1119)
Q Consensus 404 ~~~~~~~~D~i~lL 417 (1119)
. +..+++|.+.++
T Consensus 329 ~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 329 S-YLDRYNQVKAVI 341 (365)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHH
Confidence 2 444555555444
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-13 Score=152.39 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=89.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCee-EEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
+|++++ +++|++++|+||||||||||+++|+|... +. .|.|.+.+.+... ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhh-hhccCceEEEeee-----------
Confidence 677776 89999999999999999999999999654 22 5888666655431 2334566777631
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+++. +..| +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 1135 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceE
Q 001228 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~ 1077 (1119)
+.. .+++. +..|.+|++|+|..+ ....+|++
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 643 34443 356999999999864 44555654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-12 Score=151.07 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC-hhhhcceEEEEc-cCCCCCCCCCHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN-QETFARVSGYCE-QNDIHSPYVTVYE 959 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~-~~~~~~~~gy~~-q~~~~~~~~tv~e 959 (1119)
+++++|+.+++|++++|+||||||||||+++|+|...+ .+|.|.++|...- ....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998763 4799999985421 122456688887 54321
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
+++.+..++-.|+.++..+|+.+++|||..
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222356667777788899999999986
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecC
Q 001228 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
..+.+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455667666543468899999965 56778999888764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-13 Score=136.78 Aligned_cols=78 Identities=22% Similarity=0.102 Sum_probs=66.2
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+++++|+.+++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 75 899999998774221111 2899998888 89999
Q ss_pred HHHHH
Q 001228 264 ETLDF 268 (1119)
Q Consensus 264 E~l~f 268 (1119)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-14 Score=151.89 Aligned_cols=170 Identities=17% Similarity=0.225 Sum_probs=105.2
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSD 972 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~ 972 (1119)
|++++|+||||||||||+++|++. ..|.+.++|.+... ....|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINH---MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHT---TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhh---hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999962 24678888754311 1234566665433344567777765432211000
Q ss_pred ccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHH
Q 001228 973 VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1044 (1119)
Q Consensus 973 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L--S~Gqrqrl~iA~------aL~~~p~illLDEPtsgLD~~~~~~ 1044 (1119)
. ..+++.+......+. ...+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0124 788888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCCeEEEEecC-ccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1045 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1045 i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
++.++.+...+.+||.++|. ++ ++.+.||+++ +.|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88888876567899999998 65 5778899998 568998888764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-12 Score=147.42 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=94.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-ccceEEEec-cCCCC--CCCCC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYIS-QHDLH--HGEMT 261 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 261 (1119)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999986 899999985311111 345688988 65432 23444
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
++++|
T Consensus 241 ~~~~i--------------------------------------------------------------------------- 245 (361)
T 2gza_A 241 AATLL--------------------------------------------------------------------------- 245 (361)
T ss_dssp HHHHH---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 44444
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
+.++..+|+.+++||+.. .++.+.++.+.. ...|++.++|..+ ....+||+..|..|.
T Consensus 246 ------------~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 ------------RSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ------------HHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ------------HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 444456788999999985 234455555533 2346677777754 667889998887764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-14 Score=152.25 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 276 (1119)
|++++|+||||||||||+++|++. . +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 689999999999999999999972 2 68899998765332 134677776544455688888876432110
Q ss_pred chhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC--ChHHHHHHHHH
Q 001228 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTG 354 (1119)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL--SGGqkkRvsia 354 (1119)
..+. . .+++.+...... .. .+.+ |+|+++++.++
T Consensus 71 --------------~~~~---~---------------------~ild~~~~~~~~-~~-----~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 --------------LAQN---D---------------------VVLDYIAFPDEA-EA-----LAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp --------------HTTC---E---------------------EEEESCCCHHHH-HH-----HHHHHHHHCSSEEEEEE
T ss_pred --------------hcCC---c---------------------EEEeeccCHHHH-HH-----HHHHHHhcccCCCeEEE
Confidence 0000 0 000000000000 00 0114 88888888887
Q ss_pred H------HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcCh
Q 001228 355 E------MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (1119)
Q Consensus 355 ~------al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~~ 428 (1119)
. +++.+++...+|+ +||+..... .+.++.+.. .+.++|.+.|....++.+.+|+|+ .+|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8889988888884 899987777 777776643 356777665552457889999998 99999999988
Q ss_pred hHH
Q 001228 429 DNV 431 (1119)
Q Consensus 429 ~~~ 431 (1119)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-14 Score=162.50 Aligned_cols=167 Identities=9% Similarity=0.024 Sum_probs=95.9
Q ss_pred eeccceeeeeC--CcEEEEEcCCCCCHHHHHHhHcCCCCCCeeE----EEEEECCccCChhhhcceEEEEccCCCCCCCC
Q 001228 882 LLHSVSGVFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1119)
Q Consensus 882 vL~~vs~~i~~--Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~----G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~ 955 (1119)
+.+.|++.|++ |++++|+|+||||||||+++|+|... +.. |.+.+++... ..+......
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~ 221 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYS 221 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChh
Confidence 35679999999 99999999999999999999999765 334 5544421000 000001111
Q ss_pred CHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC--CCccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEeC
Q 001228 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL--KSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-ANPSIIFMDE 1032 (1119)
Q Consensus 956 tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~illLDE 1032 (1119)
.. +++.+... ........+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 222 ~~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 222 DY-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp TH-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred HH-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 11 22322110 000000000000000 0001111 1135667788888888775 5999999999
Q ss_pred ---CC------CCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1033 ---PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1033 ---Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
|+ .++|+..+..+.+.++++.+ .|.+||+++|. + .....++.+.+++
T Consensus 286 ~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 286 NNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 58999999999999988754 48999999985 2 3445556665553
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-13 Score=149.01 Aligned_cols=150 Identities=18% Similarity=0.141 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhh
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~La---G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 272 (1119)
++++++|+||||||||||+++|+ |...++ .|+|.++|.+... .....+.++.|+..+++..|+.+++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999 987765 7888887754221 1123355667777788888999999764321
Q ss_pred -cCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHH--HHcC------------CcccccccccC
Q 001228 273 -LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL--KILG------------LDICADTMVGD 337 (1119)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lg------------L~~~~dt~vg~ 337 (1119)
.+.+-..+ + .+... ++ .+.+. ..++ ++...+..++.
T Consensus 102 ~~~~~~il~------------g-~~~~~-~~---------------~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 RRGQHWLLD------------G-FPRTL-GQ---------------AEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp CTTSCEEEE------------S-CCCSH-HH---------------HHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred cCCCeEEEE------------C-CCCCH-HH---------------HHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 00000000 0 00000 00 00000 0011 11223344544
Q ss_pred ccCCCCChHHHHHHHHHHHH-hcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 001228 338 EMRRGISGGQKKRVTTGEML-VGTANVLYMD----EISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al-~~~p~illlD----EPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+|| || +++ +.+|++++|| |||+|||..+...+.+.++.+.+
T Consensus 153 -----lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 153 -----PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp -----TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred -----CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 899 66 677 9999999999 99999999999999999888755
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-13 Score=142.07 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=53.2
Q ss_pred HHHHcCCccc-ccccccCccCCCCChHHHHH-HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 321 ~l~~lgL~~~-~dt~vg~~~~rGLSGGqkkR-vsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
.++..+++.. ..+++.. +|+||||| +..+++++.+|..+++|||||++|.....++.+.|.++..
T Consensus 132 ~~~~~~~~~~~v~nK~D~-----~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKADK-----LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECGGG-----SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEecccC-----CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455666643 2455544 89999999 8999999999999999999999999999999999988754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-12 Score=153.23 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------c--ccceEEEeccCCCCC
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------V--PQRTCAYISQHDLHH 257 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 257 (1119)
-+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999875 89999987654321 0 134689999998888
Q ss_pred CCCCHHHHHHHhh
Q 001228 258 GEMTVRETLDFSG 270 (1119)
Q Consensus 258 ~~lTV~E~l~f~~ 270 (1119)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.7e-15 Score=165.49 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCC------CeeEEEEEECCccCChh------------------hhcceEEEE---c
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTG------GYIEGDIKISGYPKNQE------------------TFARVSGYC---E 946 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~------g~~~G~i~i~g~~~~~~------------------~~~~~~gy~---~ 946 (1119)
++++|+|+||||||||++.|.|...+ .+..|+|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986421 12468888888664321 233445666 5
Q ss_pred cCCCCCCCCCHHHHHHHHH--Hh-hcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 001228 947 QNDIHSPYVTVYESLLYSA--WL-RLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~--~l-~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~ 1022 (1119)
|++...+..++.|+..++. .+ +.. .+ ........++.++..+++.+..+... ++|+||+||+..+++++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~-~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSH-EVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHS-HHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcC-ccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 6555555666666554320 00 000 00 00000001122233334444333332 58999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
.+|+++ ||| +.+.+.|+++. .+.||++++|++
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccC
Confidence 999987 999 67888888874 589999999975
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-12 Score=147.95 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=99.3
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1119)
.+ |++||+.+++|++ ++|+||||||||||+++|+|.. +.|..... .......+.++|++|++.+++.+|
T Consensus 28 ~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 28 LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEGEPATH---TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp -C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C----------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccCCcCCC---CCccceEeeEEEEeecCccccccc
Confidence 44 9999999999999 9999999999999999999984 12321110 001112357999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCc----cccccc--
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLD----ICADTM-- 334 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~-- 334 (1119)
|.||+.|+.... ...... .+..+++ ...+..|... ++. ...|+.
T Consensus 99 v~D~~~~g~~~~----~~~~~~---------------~i~~~i~----------~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----KEDSYK---------------PIVEFID----------AQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----HHHHSH---------------HHHHHHH----------HHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----cchhhh---------------HHHHHHH----------HHHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 000000 0000110 1122233332 433 112322
Q ss_pred --cc--CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HH
Q 001228 335 --VG--DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ-MV 389 (1119)
Q Consensus 335 --vg--~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~-~~ 389 (1119)
+. .+...+++-.+ +.++++|..+++|+++|+|+..|.+.....+.+.+++ +.
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~ 206 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV 206 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH
Confidence 11 11124577666 7899999999999999999999999888888888876 43
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-14 Score=154.50 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHc---CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~---g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
++++++|+|+||||||||+++|+ |... +..|++.++|.+.. ....+.+++++|+....+..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 9765 45677777664422 122233455677777778889999987643100
Q ss_pred cC-----CCccHHHHHHHHHHHHHHc--C------------CCCccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCeE
Q 001228 969 LS-----SDVDTKKRKMFVDEVMELV--E------------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL-VANPSII 1028 (1119)
Q Consensus 969 ~~-----~~~~~~~~~~~~~~~l~~~--~------------l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL-~~~p~il 1028 (1119)
.. ....... ..++.+.+.. + +..+.++. +..||| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCccc
Confidence 00 0001111 1122222111 1 11112222 235888 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHhC
Q 001228 1029 FMD----EPTSGLDARAAAIVMRTVRNTVDT 1055 (1119)
Q Consensus 1029 lLD----EPtsgLD~~~~~~i~~~l~~~~~~ 1055 (1119)
+|| |||++||..+...+.+.++++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999988654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-14 Score=143.08 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------cc-ceEE----EeccCCCCCCCCCHHHHH
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQ-RTCA----YISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 266 (1119)
++++|+||||||||||++.|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999874233699999998854332 12 2355 788876554 110
Q ss_pred HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChH
Q 001228 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1119)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGG 346 (1119)
+ .. +. .+ ..+.+++. .|+ ..||.+++ |+|||
T Consensus 77 -------~--~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 00 01223333 133 57899997 59999
Q ss_pred HHHHHHHHHHHhcCCcEe
Q 001228 347 QKKRVTTGEMLVGTANVL 364 (1119)
Q Consensus 347 qkkRvsia~al~~~p~il 364 (1119)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999863
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-12 Score=146.25 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=84.9
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEEC-CccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
++++++. .+|++++|+|+||||||||+++|+|.... +..|+|.++ |.... .+..+.+++++|+..+++..+++|+.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHhh
Confidence 5566654 47999999999999999999999997641 347888876 65542 23456789999998888888888841
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 1021 (1119)
+ .....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 283 -----l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 -----L---WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -----C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -----h---cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 1 12334445566788899999988887764 4699 999999999864
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=137.93 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhce
Q 001228 1004 VSGLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl------~iA~aL~~~-p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1119)
+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCE
Confidence 357999999987 567899999 99999999999999999999999999874 3579999999974 5678999
Q ss_pred EeEEecCc
Q 001228 1077 LLLLKRGG 1084 (1119)
Q Consensus 1077 ~l~l~~gG 1084 (1119)
+++|.+.|
T Consensus 355 ~~~l~k~~ 362 (371)
T 3auy_A 355 IINVKKDG 362 (371)
T ss_dssp EEEEEESS
T ss_pred EEEEEecC
Confidence 99998555
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.1e-13 Score=134.60 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=65.9
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
+++..++++|||++++|++++|+||||||||||+++|+|.. + .+|+|.++|.++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34456899999999999999999999999999999999976 3 4799999998764211111 2789988777 899
Q ss_pred HHHHHHH
Q 001228 957 VYESLLY 963 (1119)
Q Consensus 957 v~e~l~~ 963 (1119)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=133.82 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=86.1
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC--CCCC---CeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g--~~~~---g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~t 956 (1119)
|+.+- +.+++|++++|+||||||||||+..|++ .... +...|.+++++.+.. .
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~ 71 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------R 71 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------C
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------C
Confidence 44433 5799999999999999999999999998 3321 112466777665420 0
Q ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCeEEEeCC
Q 001228 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK-RLTIAVELV--ANPSIIFMDEP 1033 (1119)
Q Consensus 957 v~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq-rl~iA~aL~--~~p~illLDEP 1033 (1119)
..+.......+ .... +++++.+.+ ....+..+.. .+.-+.+++ .+|++|++|||
T Consensus 72 ~~~~~~~~~~~----g~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERY----GLSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHT----TCCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHc----CCCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 00000000000 0000 112221110 0124544433 233333444 58999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHh-CCCeEEEEecCccHHHHH-------------------hhceEeEEe
Q 001228 1034 TSGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFE-------------------AFDELLLLK 1081 (1119)
Q Consensus 1034 tsgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~-------------------~~d~~l~l~ 1081 (1119)
++.+|+. + ...+++.|+++++ .|+|||+++|... +... .+|.+++|.
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~ 207 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEE
Confidence 9999985 3 3445555666654 4999999999643 2211 689999998
Q ss_pred cC
Q 001228 1082 RG 1083 (1119)
Q Consensus 1082 ~g 1083 (1119)
++
T Consensus 208 ~~ 209 (243)
T 1n0w_A 208 KG 209 (243)
T ss_dssp EC
T ss_pred Ec
Confidence 64
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-12 Score=144.51 Aligned_cols=121 Identities=17% Similarity=0.093 Sum_probs=81.5
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCcceEEEEC-CccCCCCcccceEEEeccCCCCCCCCCHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYC-GHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~-~~~~~~G~I~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |..... ...+.++|++|+..+++++||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 5555554 4799999999999999999999999998 75 8999987 755432 23457999999998998889998
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLS 344 (1119)
+. +.+. ...+ ......++++.+|+.+..|....+ +|
T Consensus 281 ~~-----l~~l----------~~~e------------------------~~~~~~e~l~~~gl~~f~~~~~~~-----lS 316 (358)
T 2rcn_A 281 FG-----LWHL----------EPEQ------------------------ITQGFVEFHDYLGHCKYRDCKHDA-----DP 316 (358)
T ss_dssp CC-----CCCC----------CHHH------------------------HHHTSGGGGGGTTCSSSTTCCSSS-----CT
T ss_pred hh-----hcCC----------CHHH------------------------HHHHHHHHHHHcCCchhcCCCccc-----CC
Confidence 41 1110 0000 011234567788988878877766 99
Q ss_pred hHHHHHHHHHHHH
Q 001228 345 GGQKKRVTTGEML 357 (1119)
Q Consensus 345 GGqkkRvsia~al 357 (1119)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-12 Score=146.45 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=92.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 8999999999999999999999999998762 1699987776553 23344567777731
Q ss_pred HHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCCh
Q 001228 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (1119)
Q Consensus 266 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSG 345 (1119)
+|++ . ..+
T Consensus 191 -----------------------------------------------------------~g~~------~-----~~~-- 198 (372)
T 2ewv_A 191 -----------------------------------------------------------VGED------T-----KSF-- 198 (372)
T ss_dssp -----------------------------------------------------------BTTT------B-----SCS--
T ss_pred -----------------------------------------------------------cCCC------H-----HHH--
Confidence 0110 0 013
Q ss_pred HHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 346 GqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
+.+|+++|..+|+++++|||+ |..+... .++.. ..|.+++.++|.. ++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~--~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA--ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH--TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH--hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 34332 2467776666653 4777888877664
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-11 Score=130.89 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=42.0
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEecCchh-------------------H
Q 001228 359 GTANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPAPE-------------------T 407 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~~-------------------~ 407 (1119)
.+|+++++|||++.+|+. . ...++..|+++++..+.|++++.|.. .+ +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 34567778887777788877765532 22 2
Q ss_pred HhhcCeEEEEcCC
Q 001228 408 YDLFDDIILLSEG 420 (1119)
Q Consensus 408 ~~~~D~i~lL~~G 420 (1119)
..++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2379999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-12 Score=146.24 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=101.3
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------h--hcceEEEEccCCCCCC
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------T--FARVSGYCEQNDIHSP 953 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~--~~~~~gy~~q~~~~~~ 953 (1119)
-+++||++++|++++|+|+||||||||+++|+|... +..|+|.++|.+.... . .++.++|++|+....+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 357899999999999999999999999999999654 2358899987665321 1 2456899999988788
Q ss_pred CCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh-cCC-CeEEEe
Q 001228 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV-ANP-SIIFMD 1031 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p-~illLD 1031 (1119)
..++++++.+... + ..+. -+++..|+.+... .+-..-+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~-~-~~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKA-R-NIDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHH-T-TCSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHh-c-CCCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8899999987632 1 1110 0111122211100 12224457788888663 456 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEec
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1064 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1064 (1119)
.||+|.|... .++.+.+ -|.|.|++||
T Consensus 420 DattGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred cCcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 6998876542 2333332 4889999999
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-13 Score=157.06 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=104.6
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hhcceEEEEccCCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TFARVSGYCEQNDIHS 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~~~~~gy~~q~~~~~ 952 (1119)
..+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..+
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 468999999999999999999999999999999998643 2357788887664321 2345689999988766
Q ss_pred CCC------------CHHHHHHHHH-------------------HhhcCCC-------ccHHHHHHHH-HHHHHHcCCCC
Q 001228 953 PYV------------TVYESLLYSA-------------------WLRLSSD-------VDTKKRKMFV-DEVMELVELKS 993 (1119)
Q Consensus 953 ~~~------------tv~e~l~~~~-------------------~l~~~~~-------~~~~~~~~~~-~~~l~~~~l~~ 993 (1119)
+.. ++.|.+.... .+....+ .......+.+ ..+++...+--
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 432 2333331100 0000000 0000000000 01112211110
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 994 ~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.++.. ......+|+|++|++..+++++. +|++++ ||++|......+++.|.++..
T Consensus 200 -lNK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 -VNKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -EECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEchh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 11110 00113579999999999999987 688887 999999999999999988754
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-11 Score=138.63 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1005 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~----~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++...|.++|+|||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 369999999999999999 58999999999999999999999999999865588999999984 567789999998
Q ss_pred ec
Q 001228 1081 KR 1082 (1119)
Q Consensus 1081 ~~ 1082 (1119)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-11 Score=119.89 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=37.1
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCc
Q 001228 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1066 (1119)
Q Consensus 1022 ~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1066 (1119)
+.+|++|++|||++ +|...++.+.++++++.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 46799999999998 6655588999999998877888 88899864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-13 Score=155.42 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc--------CCCCCcceEEEECCccCCCCc------------------ccceEEEe-
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL--------GKDLRASGKITYCGHELNEFV------------------PQRTCAYI- 250 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~--------~~~~~~~G~I~~~G~~~~~~~------------------~~~~~~yv- 250 (1119)
++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++.... ..+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 899999998765431 11335666
Q ss_pred --ccCCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCc
Q 001228 251 --SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (1119)
Q Consensus 251 --~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~ 328 (1119)
+|+..+++..+|.||..++... .....+.. ++.. ......+.++..+++.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~---------~~~~------------~~~~~l~~~l~~vd~~ 133 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFS---------HEVL------------CQRYLLDGVIALVDAV 133 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHH---------SHHH------------HHHEEEEEEEEEEETT
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhc---------Cccc------------cCeEEECCEEEEEEHH
Confidence 5666555667777776543110 00000000 0000 0000111223344444
Q ss_pred ccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 329 ~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
+..+... .+|||||||+..+++++.+|+++ ||| ..+.+.++++. .+.+++++.|.+.
T Consensus 134 ~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 134 HADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp THHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 4444433 28999999998888888888877 888 67777777764 3677777777643
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.6e-12 Score=139.88 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=83.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 274 (1119)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 36789999999999999999999999865 23 0 02346677999999875 88999887521000
Q ss_pred CCchhHHhHHhhHHHHhcCCCCC-hhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccc------cccCccCCCCChHH
Q 001228 275 VGTRYELLAELSRREKQAGIKPD-PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT------MVGDEMRRGISGGQ 347 (1119)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------~vg~~~~rGLSGGq 347 (1119)
.-. ..+. |+ -+.+. ....++.+.- ..+| .+. .....+||||
T Consensus 92 l~~-------------~~g~-p~a~d~~~---------------l~~~l~~l~~--g~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ-------------GRGL-PGTHDMKL---------------LQEVLNTIFN--NNEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS-------------SSCS-TTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh-------------hccC-cchhHHHH---------------HHHHHHHhhc--cCccccCcceeec-cCccccCCcc
Confidence 000 0000 11 11111 1223444422 2122 121 1235699999
Q ss_pred HHHHHHH--HHHhcCCcEeEEeCCCCCCCHHH
Q 001228 348 KKRVTTG--EMLVGTANVLYMDEISTGLDSST 377 (1119)
Q Consensus 348 kkRvsia--~al~~~p~illlDEPtsgLDs~~ 377 (1119)
+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999987 555 999999999999999853
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-11 Score=138.55 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=61.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---------cceEEEeccCCCCCCCCCHHH
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRE 264 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 264 (1119)
.++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999886 8999999988644321 123669999999999999999
Q ss_pred HHHHh
Q 001228 265 TLDFS 269 (1119)
Q Consensus 265 ~l~f~ 269 (1119)
++.++
T Consensus 203 ~l~~~ 207 (328)
T 3e70_C 203 AIQHA 207 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99775
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-12 Score=149.13 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=89.8
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHH
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~ 962 (1119)
-++|+++++.|+.++|+|+|||||||||++|+|... .+.+++.. +....+|++.+++.. .+++.|..-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~~--~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEEE--RFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSSC--EEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCcc--eEEEEeccc
Confidence 479999999999999999999999999999998642 23333321 122335555554300 001111000
Q ss_pred HHHHhhcCCCccHHHH--HHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 963 YSAWLRLSSDVDTKKR--KMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 963 ~~~~l~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+............... .+.++.++..+++. +.. ...||+|++|++.+|++|+.+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000000111000 00111122222222 111 346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEec
Q 001228 1041 AAAIVMRTVRNTVDTGRTVVCTIH 1064 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~g~tvi~~~H 1064 (1119)
....+.++.+.+.+.|.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 764333333334445777776654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-12 Score=148.48 Aligned_cols=182 Identities=14% Similarity=0.066 Sum_probs=109.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCC-------cccceEEEeccCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLH 256 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 256 (1119)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998875 89999998776432 124568999999877
Q ss_pred CCCCC------------HHHHHHHhhh-------hcCCCchhHHhHHhhHHHHhcCC---CCChh-HHHHHHHHHhhccc
Q 001228 257 HGEMT------------VRETLDFSGR-------CLGVGTRYELLAELSRREKQAGI---KPDPE-IDAFMKAVAVAGQE 313 (1119)
Q Consensus 257 ~~~lT------------V~E~l~f~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 313 (1119)
++..+ ++|.+..... ...+|-+.. +. ..+....+ .-++. -+.. + .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~-~-------~ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL-Q-------G 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC--------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH-H-------H
Confidence 75322 3333311000 000111000 00 00000000 00000 0000 0 0
Q ss_pred hhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 314 TSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 314 ~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~------~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
.......+...+.+ +..|..- .+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00011122223333 2223110 12379999999999999887 588887 999999999999999887
Q ss_pred HH
Q 001228 388 MV 389 (1119)
Q Consensus 388 ~~ 389 (1119)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.5e-12 Score=146.31 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=99.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHH
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1119)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999742 2334333322 224666666541 112222221
Q ss_pred HH---hhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 267 DF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 267 ~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
-+ +....+.+. .+.+. ...++.++..+++. +..+.+ +
T Consensus 214 Gli~~a~~~~~L~~------------------------~fl~~--------~era~~lL~vvDls---~~~~~~-----l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------------------------EFLRH--------IARTRVLLYVLDAA---DEPLKT-----L 253 (416)
T ss_dssp CCCCCGGGSCCSCH------------------------HHHHH--------HTSSSEEEEEEETT---SCHHHH-----H
T ss_pred ccccchhhhhhhhH------------------------HHHHH--------HHHHHhhhEEeCCc---cCCHHH-----H
Confidence 11 000000000 00000 00112234444443 333433 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
|+||+||+.+|++|...|.++++ +++|.... ..++.+++..+..+.+++.+.......+.++++
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 99999999999999999999999 99999766 555555555444455666554443334444443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=120.66 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.7
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1022 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1022 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+.+|++|+||||++ ++|+.....+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999998878999999999864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-12 Score=134.34 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCC------hhhhc-ceEE----EEccCCCCCCCCCHHHHH
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKN------QETFA-RVSG----YCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~------~~~~~-~~~g----y~~q~~~~~~~~tv~e~l 961 (1119)
++++|+|+||||||||+++|+|...+ |...|.|.++|.++. ...++ +.+| +++|++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 57999999999999999999996442 234799999998732 22344 3466 788876543
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHH-cCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE-------EEeCC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMEL-VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII-------FMDEP 1033 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il-------lLDEP 1033 (1119)
++. . .. +....+++.++. +. . .|..++. +||+|||||++|||+++.+|+|. .=|.|
T Consensus 74 -----i~~-~--~~-~~~a~l~~~i~~~l~--g-~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR-V--SE-EEGNDLDWIYERYLS--D-YDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE-C--CH-HHHTCHHHHHHHHTT--T-CSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec-C--Ch-hhhhCHHHHHHhhCC--C-CCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 110 0 00 101124455554 43 2 3455442 59999999999999999999873 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCC
Q 001228 1034 TSG---LDARAAAIVMRTVRNTVDTGR 1057 (1119)
Q Consensus 1034 tsg---LD~~~~~~i~~~l~~~~~~g~ 1057 (1119)
..+ +|....+.+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766655553
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-11 Score=133.80 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=95.2
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hhcc--eEEEEccCCCCCCCCCHHH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TFAR--VSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~~~--~~gy~~q~~~~~~~~tv~e 959 (1119)
..++|++++|+||||||||||++.|+|... +..|+|.+.|.+.... .+++ .+.+++|.....|..+++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 347899999999999999999999999654 2358899998875321 1223 3559999988888999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
++.+..... .+. -+++..|+.+..+. =.++.-.|++++..++.+++||.+|. .
T Consensus 203 ~l~~~~~~~--~d~----------vliDtaG~~~~~~~------------l~~eL~~i~ral~~de~llvLDa~t~-~-- 255 (328)
T 3e70_C 203 AIQHAKARG--IDV----------VLIDTAGRSETNRN------------LMDEMKKIARVTKPNLVIFVGDALAG-N-- 255 (328)
T ss_dssp HHHHHHHHT--CSE----------EEEEECCSCCTTTC------------HHHHHHHHHHHHCCSEEEEEEEGGGT-T--
T ss_pred HHHHHHhcc--chh----------hHHhhccchhHHHH------------HHHHHHHHHHHhcCCCCEEEEecHHH-H--
Confidence 997653211 110 00111222111111 12344458999998888889995554 3
Q ss_pred HHHHHHHHHHHHHH-hCCCeEEEEecC
Q 001228 1040 RAAAIVMRTVRNTV-DTGRTVVCTIHQ 1065 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~-~~g~tvi~~~H~ 1065 (1119)
.+.+.++.+. ..+.|+|++||.
T Consensus 256 ----~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 ----AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ----HHHHHHHHHHHHSCCCEEEEECG
T ss_pred ----HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3444555554 348999999995
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9.7e-13 Score=153.53 Aligned_cols=145 Identities=13% Similarity=0.034 Sum_probs=96.1
Q ss_pred cccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-------hhhcce
Q 001228 869 EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARV 941 (1119)
Q Consensus 869 ~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~ 941 (1119)
.++++++.++...+|+++ + .++|++++|+|||||||||||++|+|...+ ..|.|.+.+.++.. ....+.
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccc
Confidence 445555556556689998 5 489999999999999999999999996542 35788888766531 122333
Q ss_pred EEEEc---------cCCCCC--CC----CCHHHHHHHHHHhhc----CCCccHHHHHHHHHHHHHHcCCCCccccccCCC
Q 001228 942 SGYCE---------QNDIHS--PY----VTVYESLLYSAWLRL----SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002 (1119)
Q Consensus 942 ~gy~~---------q~~~~~--~~----~tv~e~l~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 1002 (1119)
+|+.+ |+|... .. .|+.+++.+...-+. ...... .. +.+.+..+++.+.. .
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~-~i~rL~~lgl~~~~--~---- 290 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VG-AVTRLRDMGIEPFL--I---- 290 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HH-HHHHHHHHTCCHHH--H----
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HH-HHHHHHHcCCcHHH--H----
Confidence 45544 877542 33 588888877542110 000111 11 22346667776542 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illL 1030 (1119)
+..|||||+|| ||++|+.+|++..-
T Consensus 291 -~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 -SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp -HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred -HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 24699999999 99999999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-11 Score=131.58 Aligned_cols=124 Identities=11% Similarity=0.085 Sum_probs=80.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc--c-ceEEEeccCCCCC-----CCCCHH
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP--Q-RTCAYISQHDLHH-----GEMTVR 263 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 263 (1119)
.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... + +.+||++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 468999999999999999999999 88876 899999 8987654321 1 2479999998553 68999
Q ss_pred HHH--HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-cccccccCccC
Q 001228 264 ETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMR 340 (1119)
Q Consensus 264 E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 340 (1119)
|++ .|. ... +. . |+. .+..+. .+....++.+++.+||++ .++..+..
T Consensus 238 e~l~~~f~-~~~------~~-~--c~~---~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~~--- 287 (302)
T 2yv5_A 238 REVRNYFR-EFL------RY-Q--CKY---PDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLKI--- 287 (302)
T ss_dssp GGGGGGCG-GGH------HH-H--HHS---TTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHHH---
T ss_pred HHHHHHHH-HHH------Hc-c--CCC---CCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHHH---
Confidence 888 342 100 00 0 000 000000 011224677899999986 67777766
Q ss_pred CCCChHHHHHHHHHH
Q 001228 341 RGISGGQKKRVTTGE 355 (1119)
Q Consensus 341 rGLSGGqkkRvsia~ 355 (1119)
|||.++|++.||+
T Consensus 288 --ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 288 --IKVYLEEIKELCR 300 (302)
T ss_dssp --TTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHhc
Confidence 9999999999986
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-13 Score=161.62 Aligned_cols=181 Identities=11% Similarity=0.022 Sum_probs=105.5
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC-------
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS------- 952 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~------- 952 (1119)
..+++++++.+++|+.++|+||||||||||+++|+|...+ .+|.|.++|.+.-.......+++..|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 3589999999999999999999999999999999997753 4688999886521111123455555543321
Q ss_pred ---------------CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC--ccccccC-CC----CCCCCCHH
Q 001228 953 ---------------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVG-LP----GVSGLSTE 1010 (1119)
Q Consensus 953 ---------------~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~-~~----~~~~LS~G 1010 (1119)
..++..|++.+..................+.++++.+...+ +...... .. ....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 23333443332211111000000000001223333333211 0000000 00 01247999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCccHHHHHhhc
Q 001228 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAFD 1075 (1119)
Q Consensus 1011 qrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~d 1075 (1119)
|+||++++. + | |+|||+.+...+++.|.++...|+|+++ +||+++ ++...++
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 999887752 1 7 9999999888887777777666899985 899864 4544454
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-10 Score=128.43 Aligned_cols=74 Identities=23% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCChHHHHHH------HHHHHHhcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCe
Q 001228 341 RGISGGQKKRV------TTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1119)
Q Consensus 341 rGLSGGqkkRv------sia~al~~~-p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1119)
..+|||||||+ ++|++++.+ |+++||||||+|||+..+..+.+.|+++.. +.+++++.|++ ++..++|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCE
Confidence 45999999988 567889999 999999999999999999999999988642 45788888775 46789999
Q ss_pred EEEEc
Q 001228 414 IILLS 418 (1119)
Q Consensus 414 i~lL~ 418 (1119)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-10 Score=120.57 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=39.5
Q ss_pred hcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 358 VGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 358 ~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
+.+|++|+||||++ ++|+.....+.+.+..... .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999988888887654 478888888887654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-12 Score=146.23 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=90.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEec-----
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS----- 251 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~----- 251 (1119)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 4899999999999999999999999999876 899999988764211 112334433
Q ss_pred ----cCCCC--CCC----CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH
Q 001228 252 ----QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (1119)
Q Consensus 252 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1119)
|++.. +++ .|+.+++.++..-...-.. + .. .+ .....+ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------l---------h~-~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------L---------HT-NT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------E---------CC-SS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------c---------ch-hh--------------HHHHHH-H
Confidence 77654 344 5788887764311000000 0 00 00 001122 3
Q ss_pred HHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeE
Q 001228 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (1119)
Q Consensus 322 l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~ill 365 (1119)
|..+|++... .... |||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~--~~~~-----LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--ISSS-----LLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HHHH-----EEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HHHH-----HHHHHHHH--hhhhhcCCCCccC
Confidence 5567776542 3333 99999999 9999999999876
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-11 Score=134.57 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=82.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHH---h
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAW---L 967 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~---l 967 (1119)
+++.++||+|++|||||||.+.|++.... .| . . ++.+.+++|++.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 57889999999999999999999985431 11 0 0 2345566999988764 78888877521 1
Q ss_pred hcCCCccHHHHHHHHHHHHHHcCCC--CccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHH
Q 001228 968 RLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLP-GVSGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~-~~~~LS~Gqrqrl~iA--~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
....+.+.....+...+.++.+... ......+..| ....+||||+||+.+| +++ +|+|||+|||++++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1100111111122345556655332 0000000000 1246999999999997 555 99999999999999985
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-10 Score=130.32 Aligned_cols=151 Identities=21% Similarity=0.237 Sum_probs=87.2
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhH--cCCCC---CCeeEEEEEECCccC-ChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYIEGDIKISGYPK-NQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L--~g~~~---~g~~~G~i~i~g~~~-~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
+-|++|++++|+||||||||||++.| .+... +|...+.+++++... .....+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~---------------------- 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV---------------------- 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH----------------------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH----------------------
Confidence 67999999999999999999999954 45432 112235677776542 111000
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCeEEEeCCCCCCC
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1038 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~--~~p~illLDEPtsgLD 1038 (1119)
.....+ .... +++++.+.+. ...+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~----gl~~-------~~vleni~~~------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRF----GLDP-------DDALNNVAYA------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHT----TCCH-------HHHHHTEEEE------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHc----CCCh-------HhHhhcEEEe------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 0000 0122211110 01222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CCeEEEEecCcc------------------HHHHHhhceEeEEecC
Q 001228 1039 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1039 ~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~~l~l~~g 1083 (1119)
.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 7533 5678888888754 999999999721 1134567999999764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-12 Score=150.08 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=65.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
..+++++++.+++|+.++|+|||||||||||++|+|.++++ +|.|++.|..--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 34789999999999999999999999999999999999886 899999886521111234577777765534456888
Q ss_pred HHHHHhhh
Q 001228 264 ETLDFSGR 271 (1119)
Q Consensus 264 E~l~f~~~ 271 (1119)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88765544
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-11 Score=134.67 Aligned_cols=123 Identities=14% Similarity=0.197 Sum_probs=80.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChh--hhc-ceEEEEccCCCCC-----CCCCH
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQE--TFA-RVSGYCEQNDIHS-----PYVTV 957 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~--~~~-~~~gy~~q~~~~~-----~~~tv 957 (1119)
.+.+|++++|+|+||||||||+|+|+ ... +.+|+|.+ +|.+.... ..+ +.+||++|.|.+. +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 765 45799998 88765432 112 2589999998654 67899
Q ss_pred HHHH--HHHH---H-hhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001228 958 YESL--LYSA---W-LRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVE 1020 (1119)
Q Consensus 958 ~e~l--~~~~---~-l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~a 1020 (1119)
|++ .|.. . .+........+....+.++++.++|.+ ..+... ..||+.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 4431 0 111110111122345889999999975 556653 3599988999999874
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-12 Score=148.27 Aligned_cols=168 Identities=13% Similarity=0.141 Sum_probs=114.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcC------------cCCCCCcceEEEECCccCCC----CcccceE---EEeccC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK------------LGKDLRASGKITYCGHELNE----FVPQRTC---AYISQH 253 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~------------~~~~~~~~G~I~~~G~~~~~----~~~~~~~---~yv~Q~ 253 (1119)
.+++|..++|+|+||||||||+++|+|. ..| ..|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 233 38999998854321 1223333 477788
Q ss_pred CCCCCCCCHHHHH--HHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccc
Q 001228 254 DLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1119)
Q Consensus 254 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 331 (1119)
+-+...++..|.+ .|-+.++. ++.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~-------------------------------------------~d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRA-------------------------------------------VDAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTT-------------------------------------------CSEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHHhccc--
Confidence 8777777776655 33222110 011111111111
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHhcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEecCchhHH
Q 001228 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQM-VHILDVTMIVALLQPAPETY 408 (1119)
Q Consensus 332 dt~vg~~~~rGLSGGqkkRvsia~al~~~p--~illlDEPtsgLDs~~~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~ 408 (1119)
|..+ ..+||+. +| +++++|||+.++|+......++.++.. .. .+.|++ .|-..++.
T Consensus 128 d~~i-----~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 128 DAEI-----IHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp TTCS-----SCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred ccee-----eeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 2222 2266653 88 999999999999999999999888877 43 355542 45566888
Q ss_pred hhcCeEE-EEcCC-eEEEEcChh
Q 001228 409 DLFDDII-LLSEG-QIVYQGPRD 429 (1119)
Q Consensus 409 ~~~D~i~-lL~~G-~iv~~G~~~ 429 (1119)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 888877654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=125.01 Aligned_cols=135 Identities=16% Similarity=0.033 Sum_probs=71.6
Q ss_pred EEEEcCCCCCHHHHHHhHcC-CCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCc
Q 001228 896 TALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDV 973 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g-~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~ 973 (1119)
+.|.||||+|||||+++|++ ... +..|.+.++|.+... ...+..+++++|.+.+....+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~--~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MG--NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cC--Cc
Confidence 89999999999999999998 333 235778888765421 112345777877654311100 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 974 DTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053 (1119)
Q Consensus 974 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1053 (1119)
... .+.+.++.+......+... .||+ +..+|+++|+|||++ ||..+...+.+.+.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 000 1223333321111001110 2565 788999999999999 99999999999998864
Q ss_pred hCCCeEEEEecCcc
Q 001228 1054 DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1054 ~~g~tvi~~~H~~~ 1067 (1119)
.+.++|+++|+++
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4789999999975
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=118.62 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=46.6
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEecCc------------------hhHH
Q 001228 359 GTANVLYMDEISTGLDSSTT------------FQICKFLKQMVHILDVTMIVALLQPA------------------PETY 408 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs~~~------------~~i~~~l~~~~~~~~~t~ii~~~q~~------------------~~~~ 408 (1119)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997433 56788899998888889888877611 2245
Q ss_pred hhcCeEEEEcCCe
Q 001228 409 DLFDDIILLSEGQ 421 (1119)
Q Consensus 409 ~~~D~i~lL~~G~ 421 (1119)
+.+|.++.|..++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999987653
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=105.89 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.8
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356666 8999999999999999999999998764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-09 Score=122.91 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=69.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CcCCCCCcceEEEECCccCCCCc-ccceEEEeccCCCCCCCCCHHHHHHHhhhhcCCCc
Q 001228 200 TLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG-~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 277 (1119)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+.-..+ + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 45655 799999987654322 2356788888654311100 0 00000
Q ss_pred hhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHHHHH
Q 001228 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357 (1119)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al 357 (1119)
. ..+. ...+.+.+..++.. .+ .+|| +
T Consensus 106 ~-------------------~~~~--------------~~i~~~~~~~~~~~----~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------IVIQ--------------ELLKEVAQMEQVDF----QD------SKDG-----------L 131 (354)
T ss_dssp H-------------------HHHH--------------HHHHHHTTTTC-------------------------------
T ss_pred h-------------------HHHH--------------HHHHHHHHhccccc----cc------cccc-----------c
Confidence 0 0000 00111111111111 11 2566 7
Q ss_pred hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 358 ~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
.++|+++++|||++ ||..+...+.+.+.+... +.++|++.|++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--CCEEEEEeCCHH
Confidence 88999999999999 999999999999987542 567777777765
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-12 Score=138.85 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=94.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCC-CCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (1119)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998754 789999987643321 23466777653 44555
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+++.|++.+.+..++. ... + .+....++.+..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~~--------------------------~------~~~~~~~~~l~~-- 137 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RET--------------------------G------ASVRVVNQLLTE-- 137 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHHHH--
T ss_pred eEeeehhhhhhcccCC--------------Ccc--------------------------h------HHHHHHHHHHHh--
Confidence 5666665442110000 000 0 011111223333
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEIST------------GLDSSTTFQICKFL 385 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPts------------gLDs~~~~~i~~~l 385 (1119)
|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 138 ---Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 138 ---MDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ---HHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ---hhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 9999999999999999999975 88864 23666666666544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-10 Score=125.27 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=51.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc---cceEEEeccCCC-----------
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDL----------- 255 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~---~~~~~yv~Q~d~----------- 255 (1119)
.+.+|++++|+|||||||||||++|+|...|. +|+|.+ +|++.+.... .+.++||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999886 899999 8887754321 135799999974
Q ss_pred -----CCCCCCHHHHHHHh
Q 001228 256 -----HHGEMTVRETLDFS 269 (1119)
Q Consensus 256 -----~~~~lTV~E~l~f~ 269 (1119)
++|++|| ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5788899 888774
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.8e-12 Score=143.45 Aligned_cols=171 Identities=12% Similarity=0.086 Sum_probs=113.4
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC----------CCCeeEEEEEECCccCChh----hhcce---EEEEccCCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYIEGDIKISGYPKNQE----TFARV---SGYCEQNDIH 951 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~----------~~g~~~G~i~i~g~~~~~~----~~~~~---~gy~~q~~~~ 951 (1119)
.+++|..+||+|+||||||||+++|+|.. +..+..|.+.+.|...... ..++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 1235679999987432110 01122 2467777777
Q ss_pred CCCCCHHHHH--HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--Ce
Q 001228 952 SPYVTVYESL--LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP--SI 1027 (1119)
Q Consensus 952 ~~~~tv~e~l--~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p--~i 1027 (1119)
.+..+..|++ .|...++.. +.++..++..+ +.. +..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~~-----i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DAE-----IIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TTC-----SSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cce-----eeeecccc------------Ccchhh
Confidence 7766766655 443333321 01111111111 111 22355542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCccHHHHHhhceEe-EEecCc-EEEEecCCCC
Q 001228 1028 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELL-LLKRGG-RVIYAGPLGH 1094 (1119)
Q Consensus 1028 llLDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~~l-~l~~gG-~v~~~g~~~~ 1094 (1119)
+++|||+.++|+......++.+++. ...|.||+ +|... ++.+.||++. +|. .| ++++.|+...
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~-~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLT-ETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHH-TTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhc-cCCceeecCCCCH
Confidence 9999999999999999999999988 66677864 99864 6778899998 775 46 7777666543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-11 Score=127.09 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=66.2
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|.......... .+......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~-~~~~~~~~------------------- 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEP-RGLLPRKG------------------- 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGG-GTCGGGTT-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHH-hcccccCC-------------------
Confidence 578999999999999999999999996531 223566666665543221110 00000000
Q ss_pred cCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEeCCC
Q 001228 969 LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1034 (1119)
Q Consensus 969 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA-~aL~~~p~illLDEPt 1034 (1119)
.+...+.. ...+.+..+...+..+...... ...+|+||+|++++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00000111 1122222221111111111111 225899999999998 8888888888888884
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4e-11 Score=136.84 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=98.6
Q ss_pred ceeeeceEEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCcCCCC-CcceEEEECCccCCCC---cccceEEEecc
Q 001228 184 VRILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEF---VPQRTCAYISQ 252 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~LaG~~~~~~-~~~G~I~~~G~~~~~~---~~~~~~~yv~Q 252 (1119)
..++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35778888888776 7899999999999999999999884321 1366666555443211 12356999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc
Q 001228 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 332 (1119)
.+.+.+ ++.|++.......+. +.. ... . .....++..+..++|.. ++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~----~i~--~~~----------~--------------~~~~~i~~~l~~~~li~-at 157 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQI----DIM--IGK----------G--------------PSAKSIRIDIQPFTLVG-AT 157 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EE
T ss_pred hhhcCH--HHHHHHHHHHHhccc----cee--ecc----------C--------------cccccccccCCCeEEEE-ec
Confidence 877665 788888543221100 000 000 0 00011233444556644 66
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 001228 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (1119)
Q Consensus 333 t~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~ 393 (1119)
+.++. ||+|+|+|+.++ .+||+.+..++.+.|++.++..+
T Consensus 158 ~~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 158 TRSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp SCGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 77765 999999998654 78888888999999988876544
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-11 Score=126.48 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=28.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++|++++|+||||||||||+++|+|.+++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999875
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-11 Score=130.52 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHH-HHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 353 TGE-MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 353 ia~-al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.... .| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~------a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMES------SK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTG------GG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH------hh-c--c-CCceEEEECCC
Confidence 344 677888888999999999999999999988877654211 11 1 1 57899988764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-09 Score=122.56 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE---CCccCCCCcc-cce-EEEeccCCCCCC----CCCH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP-QRT-CAYISQHDLHHG----EMTV 262 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 262 (1119)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|+.|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 345689999999999999999999999998876 899998 8876554321 112 699999987665 6899
Q ss_pred HHHHH
Q 001228 263 RETLD 267 (1119)
Q Consensus 263 ~E~l~ 267 (1119)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-10 Score=128.26 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=66.4
Q ss_pred eeeccceeee-------------------eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChhhh
Q 001228 881 QLLHSVSGVF-------------------RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQETF 938 (1119)
Q Consensus 881 ~vL~~vs~~i-------------------~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~~~ 938 (1119)
.++++|++.+ ++|+++||+|+||||||||+++|+|.....+..|+|.+ +|...... .
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-V 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-H
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-H
Confidence 3788999888 89999999999999999999999995330013688888 88775432 3
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHhh
Q 001228 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLR 968 (1119)
Q Consensus 939 ~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~ 968 (1119)
++.+|++ |...+++.+++.+++.+...++
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 3457888 7777778889999988765554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-12 Score=138.39 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=93.2
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---hhcceEEEEccCC-CCCCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---TFARVSGYCEQND-IHSPY 954 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~~~~~gy~~q~~-~~~~~ 954 (1119)
+..+++++++.+++| ++|+||||+|||||+++|+|.... +.+.++|.++... ...+.+++++|.. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 999999999999999999996542 6788998765321 2234466666653 33444
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+++.|++.+....+.. . ... .+....++. ...|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r~~-----~----~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD-----R----ETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhcccCC-----C----cch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 5555554322111100 0 000 012222333 2359999999999999999999986 9996
Q ss_pred C------------CCCHHHHHHHHHHH
Q 001228 1035 S------------GLDARAAAIVMRTV 1049 (1119)
Q Consensus 1035 s------------gLD~~~~~~i~~~l 1049 (1119)
. --|...+..|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666776666554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-08 Score=119.00 Aligned_cols=178 Identities=12% Similarity=0.093 Sum_probs=105.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEEECCccCChhhhcce-EEEEccCCCCCCCCCHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIKISGYPKNQETFARV-SGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~i~g~~~~~~~~~~~-~gy~~q~~~~~~~~tv~ 958 (1119)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+...+...+.++ .+... ....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 368889989999999999999999999999999863210 012 22222222221111111 00000 0000
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCC
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1036 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPtsg 1036 (1119)
+ .++.. ..... ....+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~------~l~~g-~l~~~-~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 Q------NLRTG-KLTPE-DWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp H------HHHTS-CCCHH-HHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred H------HHhcC-CCCHH-HHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 0 01111 12221 223345555555444432222 2358999876 5667776 67999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHhC-CCeEEEEec---------C--ccH-------HHHHhhceEeEEecC
Q 001228 1037 LD--------ARAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1037 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~~l~l~~g 1083 (1119)
.+ ......+.+.|+.++++ |++||+++| + |.+ .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 74 23446777888888744 999999999 2 421 245679999999764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-09 Score=121.57 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=66.3
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChh-hhcce-EEEEccCCCCCC----CCCHH
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQE-TFARV-SGYCEQNDIHSP----YVTVY 958 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~-~~~~~-~gy~~q~~~~~~----~~tv~ 958 (1119)
+++.+|++++|+|+||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5678999999999999999999999999765 45788888 67654321 12222 799999987665 6889
Q ss_pred HHHH--HHHH--h----hcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHH
Q 001228 959 ESLL--YSAW--L----RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1119)
Q Consensus 959 e~l~--~~~~--l----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 1013 (1119)
|++. |... + +........+....+.++++.++|.+...... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11110011122345788999999976433221 146677766
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-10 Score=131.59 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=91.1
Q ss_pred ccceeeccceeeeeCC-------cEEEEEcCCCCCHHHHHHhHcCCCCC--CeeEEEEEECCccCCh--hh-hcceEEEE
Q 001228 878 DRLQLLHSVSGVFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKNQ--ET-FARVSGYC 945 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~G-------e~~~l~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~~~~--~~-~~~~~gy~ 945 (1119)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.++.. .. .++.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 3446899999999887 88999999999999999999985411 1234444443332211 01 13468999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCCCc--cHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001228 946 EQNDIHSPYVTVYESLLYSAWLRLSSDV--DTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA 1023 (1119)
Q Consensus 946 ~q~~~~~~~~tv~e~l~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 1023 (1119)
.|.+.+.+ ++.|++....... ..+. ........+.+.++.+++.. .... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 98877655 7888775332211 1110 01111122333444444433 2222 246999999998655
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
.+||+.+...+.++|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888888888888764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-09 Score=120.64 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=60.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCcceEEEE---CCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHh
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITY---CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~--~~~~~~G~I~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 269 (1119)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++|+ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8899999999999999999999999987 65 899999 8876432 123457888 877778889999999886
Q ss_pred hhh
Q 001228 270 GRC 272 (1119)
Q Consensus 270 ~~~ 272 (1119)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=100.98 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=45.3
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh-------HHhhcCeEEEEcC
Q 001228 359 GTANVLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-------TYDLFDDIILLSE 419 (1119)
Q Consensus 359 ~~p~illlDEPtsgL--Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~-------~~~~~D~i~lL~~ 419 (1119)
.+|+++++|+|++.+ |.....+++..|.++++..+.|++++.|..... +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 655556677777777777788888876655431 4678899999964
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-09 Score=112.91 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCeEEEEecCccHH-------HHHhhceEeEEec
Q 001228 1015 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELLLLKR 1082 (1119)
Q Consensus 1015 l~iA~aL~--~~p~illLDEPtsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~-------~~~~~d~~l~l~~ 1082 (1119)
+..++.++ .+|+++++|||++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33444444 579999999999988 554444444445444 46699999999986421 3466899999875
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-08 Score=111.44 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=77.8
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHh
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 269 (1119)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. + ....|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r--------------~~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----R--------------AAAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----C--------------HHHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----c--------------HHHHHHH---
Confidence 35556889999999999999999999999998764 677776543210 0 0001111
Q ss_pred hhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHH
Q 001228 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (1119)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkk 349 (1119)
....+.+|++. +. ..|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~~-----~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----IS-----HSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----EC-----CSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----Ee-----cCCccCHH
Confidence 11233445542 22 26899999
Q ss_pred HH---HHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 350 RV---TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 350 Rv---sia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
++ ++++++..+|+++++|+|.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999964 3444556666665544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-08 Score=106.99 Aligned_cols=128 Identities=19% Similarity=0.090 Sum_probs=84.4
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
++++++ +|++++++|+||+||||++..|++.... ..|++.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHhH------------------H-HHH--
Confidence 678888 9999999999999999999999985431 23566666554321100 0 000
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1042 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-tsgLD~~~~ 1042 (1119)
..+.+..++.-+.. + ...+-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 01122334432211 0 01244456788999988899999999999 999999988
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 001228 1043 AIVMRTVRNTVDTGRTVVCTI 1063 (1119)
Q Consensus 1043 ~~i~~~l~~~~~~g~tvi~~~ 1063 (1119)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888877663 344555443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=111.78 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=110.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+.|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|++- +++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~------E~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSL------EMSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEES------SSCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEEC------CCCH
Confidence 456799999899999999999999999999999999876431 22 12455543 2444
Q ss_pred HHHHHHh-hhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 263 RETLDFS-GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 263 ~E~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
.+...-. +...+... . .+ ..+...+.+.+. +...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~--~---~l-----~~g~l~~~~~~~---------------~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA--Q---NL-----RTGKLTPEDWGK---------------LTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH--H---HH-----HTSCCCHHHHHH---------------HHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCCH--H---HH-----hcCCCCHHHHHH---------------HHHHHHHHhcCCEE---EEC--CC
Confidence 4333210 00001100 0 00 001111111111 12223333322211 111 13
Q ss_pred CCChHHHHHHHHHHHHh--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEe---------c
Q 001228 342 GISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDS--------STTFQICKFLKQMVHILDVTMIVALL---------Q 402 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~--~~p~illlDEPtsgLDs--------~~~~~i~~~l~~~~~~~~~t~ii~~~---------q 402 (1119)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|++.| .
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 48999987 5566665 68999999999997742 33467888899999888888777665 1
Q ss_pred --Cc-------hhHHhhcCeEEEEcCCeE
Q 001228 403 --PA-------PETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 403 --~~-------~~~~~~~D~i~lL~~G~i 422 (1119)
|. ..+.+.+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 32 146778999999987653
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-08 Score=120.09 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=49.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~ 240 (1119)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 3479999999999 999999999999999999999999987 8999999987654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-08 Score=111.83 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=72.7
Q ss_pred ceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHH
Q 001228 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA 965 (1119)
Q Consensus 886 vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~ 965 (1119)
+++..++|++++|+|+||+||||++..|++.... ..|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHHH-----
Confidence 4556688999999999999999999999985431 134565554332100 00111
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001228 966 WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1042 (1119)
Q Consensus 966 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl---~iA~aL~~~p~illLDEPtsgLD~~~~ 1042 (1119)
+..+.+.+++.. ...+|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 122334445432 124688999999 89999999999999999974 2333
Q ss_pred HHHHHHHHHH
Q 001228 1043 AIVMRTVRNT 1052 (1119)
Q Consensus 1043 ~~i~~~l~~~ 1052 (1119)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-08 Score=114.11 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=64.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEE---CCccCChhh--h-cceEEEEccCCC-----------
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI---SGYPKNQET--F-ARVSGYCEQNDI----------- 950 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i---~g~~~~~~~--~-~~~~gy~~q~~~----------- 950 (1119)
|.+.+|++++|+||||||||||+++|+|... +..|+|.+ +|.+..... . .+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999876 45799998 787653211 1 135799999975
Q ss_pred -----CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCC-Cccccc
Q 001228 951 -----HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSM 998 (1119)
Q Consensus 951 -----~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 998 (1119)
++|.+|+ ||+.|... ... .+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~-~~~-----~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDC-NHV-----DEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTC-CSS-----SCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCC-cCC-----CCCCcHHHHHHHcCCCCHHHHHHH
Confidence 4678888 88877521 111 12234578999999995 555554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-09 Score=128.59 Aligned_cols=159 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCC---------
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD--------- 254 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d--------- 254 (1119)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999874 2488999887766543 3588988742
Q ss_pred -------------CCCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHH
Q 001228 255 -------------LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (1119)
Q Consensus 255 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1119)
+.+..+++.+|+... .+.. .+.+.+ ..... ..
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~--------------------~~~~~v-----------~~~~~---~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGR--------------------TKAPFI-----------DATGA---HA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTC--------------------SSCCEE-----------ECTTC---CH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccC--------------------CCCCEE-----------EcCCC---CH
Confidence 111122222222110 0000 000000 00000 01
Q ss_pred HHHcCCcccccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 322 l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
-+.+|.-..... ...++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 112222111111 124599999999999999999999999999998 898888878777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-07 Score=105.69 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCccH-----
Q 001228 1013 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1068 (1119)
Q Consensus 1013 qrl~iA~aL~~~--p~illLDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1068 (1119)
+.+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456678888765 9999999999998 33 1222444455554 3559999999996431
Q ss_pred ----------HHHHhhceEeEEecCcEEEEec
Q 001228 1069 ----------DIFEAFDELLLLKRGGRVIYAG 1090 (1119)
Q Consensus 1069 ----------~~~~~~d~~l~l~~gG~v~~~g 1090 (1119)
.+...+|.++.+.+ ++++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr-~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRR-IETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEE-EEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEE-eeeeecC
Confidence 13456788888865 3443333
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.47 E-value=9.6e-11 Score=130.05 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=82.5
Q ss_pred cccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CC
Q 001228 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HS 952 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~ 952 (1119)
+....+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 34456899999999999 89999999999999999998653 4677887754311 112233556666543 44
Q ss_pred CCCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001228 953 PYVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLD 1031 (1119)
+.+++.|++......+... .....+....+.+++ ..|||||+|++.|++++..+|++ ||
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh--CC
Confidence 5667777764322111100 000111122222222 14899999999999999999987 56
Q ss_pred CC
Q 001228 1032 EP 1033 (1119)
Q Consensus 1032 EP 1033 (1119)
++
T Consensus 193 ~~ 194 (278)
T 1iy2_A 193 PA 194 (278)
T ss_dssp HH
T ss_pred Hh
Confidence 55
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-10 Score=127.48 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=82.6
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCC-CCC
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDI-HSP 953 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~-~~~ 953 (1119)
....+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3446899999999999 99999999999999999998653 4677787754211 111233555666532 445
Q ss_pred CCCHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 954 YVTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 954 ~~tv~e~l~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
.+++.|++......+... .....+....+.+++ ..|||||+||+.|++++..+|++ +|+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 666666663322111100 001111122222222 14789999999999999999987 677
Q ss_pred CCC
Q 001228 1033 PTS 1035 (1119)
Q Consensus 1033 Pts 1035 (1119)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-07 Score=102.65 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=81.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~ 970 (1119)
++|++++|+|+||+||||++..|++.... ..| +.+.++.+++. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47999999999999999999999985421 123 12455555542 234445443321
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 001228 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050 (1119)
Q Consensus 971 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~ 1050 (1119)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 111221100 1222 23344555 45999999999 99999876655554443
Q ss_pred HHH---hCCCeEEE-EecCccHHHHHhhceEeEEecCcEEEEe
Q 001228 1051 NTV---DTGRTVVC-TIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1119)
Q Consensus 1051 ~~~---~~g~tvi~-~~H~~~~~~~~~~d~~l~l~~gG~v~~~ 1089 (1119)
-+. ..+.++|+ ++|..+ ++...++++..+..+| ++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~g-iVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQ-YIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCE-EEEE
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCE-EEEe
Confidence 322 11233444 378753 5666677666555544 5543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-07 Score=103.31 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=84.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhhhhcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 274 (1119)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 479999999999999999999999998653 45 23566666542 2455666543211
Q ss_pred CCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHHHHHHHH
Q 001228 275 VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354 (1119)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqkkRvsia 354 (1119)
.+|++.. .. .+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~~------~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----VC------YT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----BC------SS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----ec------CC-HHHHHHHHH
Confidence 1222210 00 12 233355555
Q ss_pred HHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCc-EEEEEEecCchhHHhhcCeEEEEcCCeEEEE
Q 001228 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI-LDV-TMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (1119)
Q Consensus 355 ~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~-~~~-t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~ 425 (1119)
+ +.+++++|+| |+|+|+.....+.+..+-+... ... ++++...+...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 9999986654444333222100 112 2333123444567777776666666777653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.4e-09 Score=108.09 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=49.1
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCCCCHHHHHH
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 3555554433221 1345789999877776666666554
Q ss_pred H
Q 001228 268 F 268 (1119)
Q Consensus 268 f 268 (1119)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=100.54 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=79.7
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHH
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678887 99999999999999999999999998764 68888766432110 000 0000
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
.+.+..|++.... + .+-.-.+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432110 0 0123345
Q ss_pred HHHHHHHHHHhcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001228 348 KKRVTTGEMLVGTANVLYMDEI-STGLDSSTTFQICKFLKQM 388 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEP-tsgLDs~~~~~i~~~l~~~ 388 (1119)
-+|.+++++...+++++++||| +.|+|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5788999988899999999999 9999988777777665543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.5e-09 Score=126.89 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=99.0
Q ss_pred ccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCC------
Q 001228 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH------ 951 (1119)
Q Consensus 878 ~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~------ 951 (1119)
+...+++++++.+.+|+.+.|+||||+|||||+++|++..... ..|.+.+.+.+... ....++|+|+....
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 4456899999999999999999999999999999999976432 23778888766532 34557888764310
Q ss_pred ----------------CCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH
Q 001228 952 ----------------SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL 1015 (1119)
Q Consensus 952 ----------------~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl 1015 (1119)
+..+++.+|+.....-......-. .. .....++++........ ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-AT---GAHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CT---TCCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cC---CCCHHhcCceEEechhh-----cCCccccccccc
Confidence 011111111100000000000000 00 00011222221111111 135999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 1016 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051 (1119)
Q Consensus 1016 ~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~ 1051 (1119)
..++...+++.+|||||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999888888875
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.6e-09 Score=123.39 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=97.5
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcC--CCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCC-C-CCCHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS-P-YVTVYES 960 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g--~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~-~-~~tv~e~ 960 (1119)
.+++.+.++..+.|.|.+||||||++++|.. ..... .+++.+.+.+.+...+... ..-+.+. + .-.+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3677788899999999999999999999864 11111 1333333333222111110 0001110 0 0122222
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-eEE
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL----------TIAVELVANPS-IIF 1029 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 1029 (1119)
...-.++ ..+.+++ .+.++..++.++.+..... ...+|+||+|+. ++++++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1222223 3678888877654321000 013677877652 35666777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCccHH-----HHHhhceEeEE
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPSID-----IFEAFDELLLL 1080 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~~~-----~~~~~d~~l~l 1080 (1119)
+||+++-+|.. ...+.+.+.++++ .|.++|++||+|+.+ +...+...+.+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 99999998843 3455566665543 377999999998732 34455444444
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-07 Score=103.52 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHHHHhc--CCcEeEEeCCCCCC----------CH---HHHHHHHHHHHH---HHHhCCcEEEEEEecCch------
Q 001228 350 RVTTGEMLVG--TANVLYMDEISTGL----------DS---STTFQICKFLKQ---MVHILDVTMIVALLQPAP------ 405 (1119)
Q Consensus 350 Rvsia~al~~--~p~illlDEPtsgL----------Ds---~~~~~i~~~l~~---~~~~~~~t~ii~~~q~~~------ 405 (1119)
-+.++++++. +|+++++|+|++.+ |+ ..+..+.+.+++ +++..+.|+|++.|-...
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 3557777765 49999999999998 33 222233344444 446667787776553321
Q ss_pred ---------hHHhhcCeEEEEcCCeEEEEcC
Q 001228 406 ---------ETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 406 ---------~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
.+..++|.++.+..++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1456789888888776654443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-07 Score=98.07 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001228 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052 (1119)
Q Consensus 1013 qrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~ 1052 (1119)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999 9999999999999888764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-08 Score=114.84 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=44.2
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.+|++|||+|++ ++++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 479999999999 9999999999999999999999755 3468888888764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.30 E-value=9.4e-10 Score=122.02 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=55.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 4789999999999 89999999999999999999874 6889998866432211 123555666532 44556
Q ss_pred CHHHHHH
Q 001228 261 TVRETLD 267 (1119)
Q Consensus 261 TV~E~l~ 267 (1119)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666664
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-08 Score=105.33 Aligned_cols=69 Identities=22% Similarity=0.174 Sum_probs=44.6
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
|+++++|++++|+||||||||||+++|+|... .+.+++..... ...++.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999642 23444432211 12245678999987655555544443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.4e-07 Score=102.60 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=29.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
|=+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-07 Score=98.91 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001228 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (1119)
Q Consensus 349 kRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~ 387 (1119)
+.+.+|++++.+|+++++| ||++|.....++.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999888765
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-09 Score=118.98 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=54.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCC-CCCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 4789999999999 99999999999999999999874 5888888865432111 12345555553 234455
Q ss_pred CHHHHHH
Q 001228 261 TVRETLD 267 (1119)
Q Consensus 261 TV~E~l~ 267 (1119)
++.|++.
T Consensus 112 ~~~Deid 118 (254)
T 1ixz_A 112 VFIDEID 118 (254)
T ss_dssp EEEETHH
T ss_pred EEehhhh
Confidence 6656653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-07 Score=112.04 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=90.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCC--CHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--TVRE 264 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~--~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 264 (1119)
.+++.+..+..++|.|++||||||+|++|..- .... .|++.+.+.+...... +....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 37778888999999999999999999998752 2222 4566554444322111 000111221 2222
Q ss_pred HHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccc--ccccCccCCC
Q 001228 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD--TMVGDEMRRG 342 (1119)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~rG 342 (1119)
+...+.+.. .....++.+ + ...++..|+.+..+ ..+.. .
T Consensus 228 d~~~a~~~L-----~~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~~----~ 268 (512)
T 2ius_A 228 DMKDAANAL-----RWCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIAE----A 268 (512)
T ss_dssp SHHHHHHHH-----HHHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHHH----H
T ss_pred CHHHHHHHH-----HHHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHHH----H
Confidence 222211100 000111111 1 23556666654322 12211 2
Q ss_pred CChHHHHHH----------HHHHHHhcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHH---HHhCCcEEEEEEecCch
Q 001228 343 ISGGQKKRV----------TTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQM---VHILDVTMIVALLQPAP 405 (1119)
Q Consensus 343 LSGGqkkRv----------sia~al~~~p~-illlDEPtsgLDs~~~~~i~~~l~~~---~~~~~~t~ii~~~q~~~ 405 (1119)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++ .+..|.++|++.+.|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 788888753 24455667887 89999999988843 23444444444 44457788888888873
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-07 Score=98.11 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=23.3
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCcCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLGK 223 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La-G~~~~ 223 (1119)
+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999 98753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.7e-08 Score=103.85 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=40.7
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-----------ccceEEEeccC
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----------PQRTCAYISQH 253 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-----------~~~~~~yv~Q~ 253 (1119)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456666 899999999999999999999999987 899999998763211 13468898884
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5.4e-07 Score=94.16 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053 (1119)
Q Consensus 1015 l~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~ 1053 (1119)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999988887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-06 Score=99.36 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCcc
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1067 (1119)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||++||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44777777777777777663 24678999999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.3e-07 Score=94.91 Aligned_cols=185 Identities=14% Similarity=0.049 Sum_probs=68.3
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc-CCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~-g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
+..+++||++++|++++|+||||||||||+++|+ |.... ..+.+.+...+.... .....+|.++++..+..+++.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g-~~~g~~~~~~~~~~~~~~~~~~ 91 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKG-EKEGKDYYFVDREEFLRLCSNG 91 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTT-CCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCcc-ccCCCeEEEecHHHhhhhhhcC
Confidence 4688999999999999999999999999999999 97531 222222222111110 0112234544332221111111
Q ss_pred HHHHHHHhhcC-CCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHH-HHH-HHHhcCCCeEEEeCCCCC
Q 001228 960 SLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSG 1036 (1119)
Q Consensus 960 ~l~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl-~iA-~aL~~~p~illLDEPtsg 1036 (1119)
++.....+..+ ..... +.++++++.-.. -+.+-.. .-...-++++ .-+ ..++..|+..++||++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-vild~~~------~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 92 EIIEHAEVFGNFYGVPR----KNLEDNVDKGVS-TLLVIDW------QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp CEEEEEEETTEEEEEEC----TTHHHHHHHTCE-EEEECCH------HHHHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred ceehhhhhccccCCCCH----HHHHHHHHcCCe-EEEEcCH------HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 11100000000 00000 113333333110 0111000 0011122322 111 223556677778899999
Q ss_pred CCHHHHHHHHHHHHHHHh-----CCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1037 LDARAAAIVMRTVRNTVD-----TGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~-----~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
.|..+.+.+.+.+++... ....+|++.|+++ ++...+++++-.
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~ 208 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRA 208 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHH
Confidence 998888777776665432 2457888888754 455666666543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-07 Score=97.62 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCCCCHHHHHHH
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 268 (1119)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 556789999999999999999999999975 77888887654211 11235777876555555566666543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-06 Score=97.42 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCC-------C-CcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHHHHHHHhh
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKD-------L-RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~-------~-~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 270 (1119)
.++|+|+||||||||++.|+|..... . ..+|.|.++|.++. .-.+.|++.|.+...-+ ..+.++....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHHHHHH
Confidence 48999999999999999999986410 0 24789999886432 12245555542211000 0111111100
Q ss_pred hhcCCCchhHHhHHhhHHHHhcCCCCChh--HHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHHH
Q 001228 271 RCLGVGTRYELLAELSRREKQAGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (1119)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGqk 348 (1119)
.....-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. .--+|+|++
T Consensus 257 ~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~ 310 (364)
T 2qtf_A 257 YSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKINGDLY 310 (364)
T ss_dssp GSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHH
T ss_pred hCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHH
Confidence 0000000000 0 0111 110 0112345677777765442223331 112688899
Q ss_pred HHHHHH----HHH-hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001228 349 KRVTTG----EML-VGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (1119)
Q Consensus 349 kRvsia----~al-~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~ 390 (1119)
+|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 311 ~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 311 KKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 988887 555 333444 89999999999999988877654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.5e-06 Score=93.60 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=84.4
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCH
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1119)
..+-|+.+.+-++||+++.|.|+||+|||||+.-++..... .| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 45578888888999999999999999999999998865421 11 23555543 3555
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.+... |+ .. . ...+.+.+.. -|.
T Consensus 87 ~ql~~---Rl---------ls----~---------------------------------~~~v~~~~l~---~g~----- 109 (338)
T 4a1f_A 87 EQLAL---RA---------LS----D---------------------------------LTSINMHDLE---SGR----- 109 (338)
T ss_dssp HHHHH---HH---------HH----H---------------------------------HHCCCHHHHH---HTC-----
T ss_pred HHHHH---HH---------HH----H---------------------------------hhCCCHHHHh---cCC-----
Confidence 44431 00 00 0 0000111111 133
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVA 399 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~-~~t~ii~ 399 (1119)
||+++.+|++.|...+.++++++.|+|... ..+|...++++.+.. +..+|+.
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999998643 336666677666655 4454444
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-07 Score=99.37 Aligned_cols=59 Identities=17% Similarity=0.123 Sum_probs=38.6
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-----------hhhcceEEEEccC
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----------ETFARVSGYCEQN 948 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----------~~~~~~~gy~~q~ 948 (1119)
+++|.+ ++++|+|||||||||||++|+|...+ ..|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 89999999999999999999996542 36788888766411 1134568999874
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=92.76 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCC---------CCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHHHHH-
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS- 964 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~---------~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~- 964 (1119)
.++|+|++|||||||++.|+|... -++..|.+.++|.+. .+....|++.+.+. ..+ |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~----~lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPP----QIV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCG----GGH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCH----HHH-HHHHHHH
Confidence 399999999999999999999532 113568888888542 12233455443221 112 111000
Q ss_pred HHhhc---------CCCcc--HHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCeE
Q 001228 965 AWLRL---------SSDVD--TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA----VEL-VANPSII 1028 (1119)
Q Consensus 965 ~~l~~---------~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA----~aL-~~~p~il 1028 (1119)
..++. ..+.. .......+.++++.+++.+..--.+.. .+..+|+++++++.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 00110 01111 122233456777777765432000000 1234788888888877 555 334454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
+|+|++|......+.+.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-05 Score=94.80 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=29.1
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++++++.+++| ++|.||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 466777777777 7899999999999999999865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-06 Score=98.34 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred eeccce--eeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 882 LLHSVS--GVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 882 vL~~vs--~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-|+.+- +-+++|+++.|.||+|+|||||+..+++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 47899999999999999999999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-06 Score=104.35 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCccHHHHHhhceEeEEecC
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELLLLKRG 1083 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~~l~l~~g 1083 (1119)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+...++..-++...
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEECC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccccc
Confidence 479999999999999999999999999996 999887766666666554445677775 88764 566666654444333
Q ss_pred c
Q 001228 1084 G 1084 (1119)
Q Consensus 1084 G 1084 (1119)
|
T Consensus 269 g 269 (773)
T 2xau_A 269 G 269 (773)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.8e-06 Score=85.55 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=32.9
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~ 224 (1119)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.5e-07 Score=95.15 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=37.0
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh--hhcceEEEEccC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE--TFARVSGYCEQN 948 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~--~~~~~~gy~~q~ 948 (1119)
...++|++++|+|+||||||||+++|++.. |.+.++|.+.... ..+...|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 455789999999999999999999999743 6677887654321 111234666664
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.8e-06 Score=92.37 Aligned_cols=128 Identities=14% Similarity=0.152 Sum_probs=80.4
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 5777777899999999999999999999988875211 0 11 11333321 23333322
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001228 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1119)
Q Consensus 962 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~ 1041 (1119)
.- +......+.+..+.+ ..||.++.+|+..|...+.++++++.|+|...+|
T Consensus 91 ~R------------------lls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 LR------------------ALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp HH------------------HHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred HH------------------HHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 10 001111111111111 1499999999999999999999999999976533
Q ss_pred HHHHHHHHHHHHh-C-CCeEEEEec
Q 001228 1042 AAIVMRTVRNTVD-T-GRTVVCTIH 1064 (1119)
Q Consensus 1042 ~~~i~~~l~~~~~-~-g~tvi~~~H 1064 (1119)
.|...++++.. . |..+|+|-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 55555666543 3 677777754
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-05 Score=84.32 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.5
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
..+-|+++.+-+++|+++.|.|+||+|||||+..++..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45568888888999999999999999999999888754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3e-06 Score=95.43 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=60.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------c-----cceEEEe-cc
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------P-----QRTCAYI-SQ 252 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~-----~~~~~yv-~Q 252 (1119)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998764 788988776653211 1 3458888 77
Q ss_pred CCCCCCCCCHHHHHHH
Q 001228 253 HDLHHGEMTVRETLDF 268 (1119)
Q Consensus 253 ~d~~~~~lTV~E~l~f 268 (1119)
.....|..++.+++..
T Consensus 171 ~~~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 171 KLNADPASVVFDAIKK 186 (320)
T ss_dssp STTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7655555566777654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=7.7e-06 Score=85.25 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001228 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389 (1119)
Q Consensus 351 vsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~ 389 (1119)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999988888776543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.1e-05 Score=90.25 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCcc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1067 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1067 (1119)
..+|++++|++. +.+...++-++++| +|++++|......+.+.+.+... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998776 55556777788999 99999999998888887777643 78888888 7753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.4e-06 Score=86.28 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~ 224 (1119)
++++|++++|+||||||||||++.|++.+.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.7e-06 Score=91.29 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=34.9
Q ss_pred ceeeccceeeeeC---CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 880 LQLLHSVSGVFRP---GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 880 ~~vL~~vs~~i~~---Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+|+|+||+|++ |++++|+|++||||||+.++|++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999 999999999999999999999974
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.1e-05 Score=84.32 Aligned_cols=39 Identities=33% Similarity=0.170 Sum_probs=25.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
...+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999876
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.1e-06 Score=91.22 Aligned_cols=63 Identities=24% Similarity=0.121 Sum_probs=46.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCcceEEE--------ECCccCCCCc----ccceEEEe
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKIT--------YCGHELNEFV----PQRTCAYI 250 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~La---G~~~~~~~~~G~I~--------~~G~~~~~~~----~~~~~~yv 250 (1119)
++++++ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 887665 89998 8888774321 13457788
Q ss_pred ccCC
Q 001228 251 SQHD 254 (1119)
Q Consensus 251 ~Q~d 254 (1119)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 7653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.2e-07 Score=112.79 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=51.2
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---hhcceEEEEccCCC-CCCCC
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---TFARVSGYCEQNDI-HSPYV 955 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~~~~~gy~~q~~~-~~~~~ 955 (1119)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.++|.+.... ...+.+++++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998653 35677887653211 11223445555543 33444
Q ss_pred CHHHHH
Q 001228 956 TVYESL 961 (1119)
Q Consensus 956 tv~e~l 961 (1119)
.+.|++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.5e-07 Score=107.93 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=52.7
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCC-CCCCC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGEM 260 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1119)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.+.++|.++.+... .+.+.+++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 3688999999999 89999999999999999999874 5788898877643211 123445555432 33444
Q ss_pred CHHHHH
Q 001228 261 TVRETL 266 (1119)
Q Consensus 261 TV~E~l 266 (1119)
.+.+++
T Consensus 127 l~IDEI 132 (499)
T 2dhr_A 127 VFIDEI 132 (499)
T ss_dssp EEEECG
T ss_pred EEEehH
Confidence 444444
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.6e-05 Score=98.47 Aligned_cols=133 Identities=15% Similarity=0.066 Sum_probs=72.9
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC---hhhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|.... ....++.+++..|...+... ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 3567889999999999999999999999632211123555 3443321 12223334443332211100 00
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
...+.| .||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 75 ---------------------------~~nliD----TpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 75 ---------------------------RVFLLD----APGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ---------------------------EEEEEE----CCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ---------------------------EEEEEe----CCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 001112 12211222 122233336778889999 99999998874
Q ss_pred HHHHHHHHHHhCCCeEEEEecCccH
Q 001228 1044 IVMRTVRNTVDTGRTVVCTIHQPSI 1068 (1119)
Q Consensus 1044 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1068 (1119)
.+ +.+...+..+|++.|..+.
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGGG
T ss_pred HH----HHHHHccCCEEEEecCCch
Confidence 33 3333458889999998663
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.3e-06 Score=88.50 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=42.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEE--EECCccCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--TYCGHELN 239 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I--~~~G~~~~ 239 (1119)
.+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 345566777778999999999999999999999999986 2 5776 78876543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=4.6e-06 Score=90.48 Aligned_cols=39 Identities=44% Similarity=0.559 Sum_probs=36.4
Q ss_pred ceeeeceEEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 184 VRILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 184 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999 99999999999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=2.1e-05 Score=80.81 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
+|++++|+||||||||||++.|++.+++. ..|.|.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 68999999999999999999999987532 3565554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=1.7e-05 Score=82.92 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=42.2
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1017 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1017 iA~-aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
+++ +++.+|++++|||||+++|..+.+.|++.|.+..+. +.++|.+ ..+|.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888899999999999999999999999887542 2335621 4578877764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.7e-05 Score=79.87 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=29.7
Q ss_pred ccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 884 HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 884 ~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++++.+.+| +++|+|+||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999 9999999999999999999874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.54 E-value=1e-05 Score=88.05 Aligned_cols=57 Identities=23% Similarity=0.136 Sum_probs=44.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHc---CCCCCCeeEEEEE--------ECCccCCh----hhhcceEEEEccCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIK--------ISGYPKNQ----ETFARVSGYCEQND 949 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~---g~~~~g~~~G~i~--------i~g~~~~~----~~~~~~~gy~~q~~ 949 (1119)
++|++++|+|+|||||||++++|+ |... +..|.+. .+|.++.. ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 4568877 77776532 24556678888653
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.1e-05 Score=96.44 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++-+++...+.+++++.
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 69999999999999999999999999996 9998877777666654432 23566665555666777778743
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1.7e-05 Score=89.38 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hh-----cceEEEE-ccC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TF-----ARVSGYC-EQN 948 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~-----~~~~gy~-~q~ 948 (1119)
++++++|.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+.... .+ +..++++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998543 1236677766665321 12 3457888 555
Q ss_pred CCCCCCCCHHHHH
Q 001228 949 DIHSPYVTVYESL 961 (1119)
Q Consensus 949 ~~~~~~~tv~e~l 961 (1119)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4333333334443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.6e-05 Score=80.37 Aligned_cols=36 Identities=31% Similarity=0.171 Sum_probs=23.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++||||++++|++++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999999999964
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=2.7e-05 Score=83.49 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=35.4
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 238 (1119)
-++..++|++++|.|++|||||||+++|+|. .|+|.+++++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445679999999999999999999999997 47788887654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00055 Score=78.67 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCcc
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1067 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1067 (1119)
.+|.+|++||+..- |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876654 5788999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00032 Score=80.23 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMD-EISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlD-EPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~ 400 (1119)
+|+||+|++. +.+...++-++++| ++..|+|......+++.++.... +..++++.
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 7999998876 55556778889999 99999999888888777766432 45555555
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=2.1e-05 Score=82.51 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHH-HHHhhceEeEEe
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELLLLK 1081 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~~l~l~ 1081 (1119)
.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .+.+||+.+|..... ....||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678888999998888887654332 3355666666555555432 356888888865311 145678888885
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.41 E-value=2.1e-05 Score=90.34 Aligned_cols=44 Identities=34% Similarity=0.316 Sum_probs=39.3
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
..+|+++++.+++|++++|+||||||||||+++|+|.. +|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 566655
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=2.8e-05 Score=81.27 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=39.4
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEE--EECCcc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYP 932 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i--~i~g~~ 932 (1119)
....+.+++..++|++++|+|+||||||||+++|++... ..|.+ .++|.+
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 346677888889999999999999999999999998542 12444 777654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=3.3e-05 Score=82.73 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.3
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
++..++|++++|+|+||||||||+++|+|. .|+|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecC
Confidence 445689999999999999999999999986 2557777765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=80.44 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1064 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1064 (1119)
.+..++++..+++..+.+|++++|.-..+..|... ....+.++.+...| .+|++++.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999877774344455443 34456666665445 57777776
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.37 E-value=6e-05 Score=78.77 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.8
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
++++|++++|+|+||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.36 E-value=8.2e-05 Score=78.30 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=27.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00019 Score=80.59 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=77.8
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
.-|+++.+-+++|+++.|.|++|+|||||+..++...- . .| ..+.|+.- .++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~------~g---------~~vl~~sl------E~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---D------ND---------DVVNLHSL------EMGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---T------TT---------CEEEEEES------SSCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEEC------CCCHHHH
Confidence 35788888899999999999999999999888874210 0 00 11333321 1233322
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
..-. ......+.+..+.+.. ..||.++++|+..|...+.++++++.|+|...+
T Consensus 112 ~~R~------------------~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~--- 164 (315)
T 3bh0_A 112 IKRL------------------IVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV--- 164 (315)
T ss_dssp HHHH------------------HHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH---
T ss_pred HHHH------------------HHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH---
Confidence 2110 0000011111111100 128889999999999988889999999886442
Q ss_pred HHHHHHHHHHHHHhC-CCe--EEEEec
Q 001228 1041 AAAIVMRTVRNTVDT-GRT--VVCTIH 1064 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~t--vi~~~H 1064 (1119)
..|...++++..+ |.. +|++-|
T Consensus 165 --~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 --NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp --HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred --HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3355555665433 666 777755
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00019 Score=80.11 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--eEEEEecCccHHHHHhhceEe
Q 001228 1007 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELL 1078 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~--~~p~illLDEPtsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~~l 1078 (1119)
+|.|++ .++..+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+...+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 4566666 67999998 7899876 66778888888654 43 5666777643 4556666654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=7e-05 Score=76.90 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+|++++|+||||||||||+++|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=76.70 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=36.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++|.+++|+|+||||||||.+.|++.++ .+.+++|++.+++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 467899999999999999999999999763 25778888776643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0012 Score=73.27 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++.-++|.||||+|||||.++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00091 Score=76.04 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.4
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44443 5799999999999999999999998886
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=8.4e-05 Score=75.62 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.+|++++|+|||||||||+++.|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999874 567776644
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.26 E-value=6.5e-05 Score=78.61 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=33.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.++|++++|+||||||||||++.|++.+++. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988654 6777665443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0001 Score=76.61 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4799999999999999999999999865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=5.2e-05 Score=93.91 Aligned_cols=47 Identities=32% Similarity=0.338 Sum_probs=33.9
Q ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCC
Q 001228 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (1119)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~ 239 (1119)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|....
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~ 49 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTT 49 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccc
Confidence 3456789999999999999999999999765431 235777 5665443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00096 Score=75.22 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=29.9
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 186 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-|+.+- +-+++|+++.|.||||+|||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 344443 678999999999999999999999998753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.22 E-value=6.3e-05 Score=86.38 Aligned_cols=143 Identities=12% Similarity=0.043 Sum_probs=79.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCC-CCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH-SPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~-~~~~tv~e 959 (1119)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+ ...+...+|+++|...+ +..++...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4899999999999999999999999999999999843 3454431211 11112235666666532 22222111
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHH---cCCCC-cc---cccc--C--CCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMEL---VELKS-LN---DSMV--G--LPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~l~~-~~---~~~~--~--~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
.+ .+.............+...++- +.+.. .. +... + ......+++|+++|+..+++++.+|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0100000000001112233320 00110 00 1000 0 0013458999999999988888999987
Q ss_pred E-EeCCCC
Q 001228 1029 F-MDEPTS 1035 (1119)
Q Consensus 1029 l-LDEPts 1035 (1119)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 6 999987
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00034 Score=80.15 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=27.5
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
..+|+++++.++ .++|+|++||||||||++|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0017 Score=73.76 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeeceE-EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 57999999999999999999999999875
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=72.54 Aligned_cols=59 Identities=27% Similarity=0.314 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCeEEEEecCc
Q 001228 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARA----------AAIVMRTVRNTVD----TGRTVVCTIHQP 1066 (1119)
Q Consensus 1008 S~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~----------~~~i~~~l~~~~~----~g~tvi~~~H~~ 1066 (1119)
+++++.+..++.+...+|.+||+||+.+-++... ...+...+..... .+..||++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 4577777788888888999999999987765422 2233333333211 235678888875
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0027 Score=72.80 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++|.||+|+|||||++.+++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999998765
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=74.71 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=28.4
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 44443 6799999999999999999999998875
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=75.45 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=33.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..-|+.+.+=+++|+++.|.|+||+|||||+..++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34577777779999999999999999999999888754
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00018 Score=75.58 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~ 918 (1119)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999998654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=70.47 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=24.1
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344556666 89999999999999999986
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00013 Score=87.94 Aligned_cols=42 Identities=33% Similarity=0.380 Sum_probs=36.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce-EEE-ECCcc
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KIT-YCGHE 237 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G-~I~-~~G~~ 237 (1119)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999875 55 675 77754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=69.78 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=24.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+.++.+.+| +++|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345556665 999999999999999999974
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.00 E-value=7.7e-05 Score=83.68 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998863
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00025 Score=71.81 Aligned_cols=27 Identities=44% Similarity=0.643 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=72.80 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=26.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+++|++++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999864
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.96 E-value=6e-05 Score=84.58 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=35.2
Q ss_pred cccceeeccceeeeeCCc------EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 877 EDRLQLLHSVSGVFRPGV------LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 877 ~~~~~vL~~vs~~i~~Ge------~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
++..+.|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888888888877 99999999999999999999853
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00043 Score=81.49 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=38.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1023 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|++.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887664 6778889999988888999999999853
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00031 Score=82.74 Aligned_cols=47 Identities=4% Similarity=0.184 Sum_probs=35.1
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEecCchh
Q 001228 359 GTANVLYMDEISTGLDS-STTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1119)
Q Consensus 359 ~~p~illlDEPtsgLDs-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 406 (1119)
.++++||+||+..-.+. .++..+...+..+.. .++.+|++.+.|..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHH
Confidence 38999999999887664 567778888877653 467788887776544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00095 Score=77.76 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999964
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=73.68 Aligned_cols=29 Identities=45% Similarity=0.741 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++++.-++|.||||+|||||.++|++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46788899999999999999999998763
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0029 Score=68.49 Aligned_cols=34 Identities=38% Similarity=0.744 Sum_probs=24.9
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 55555555555 88999999999999999999864
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00039 Score=72.30 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00043 Score=70.26 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
.+|++++|+|+||||||||+++|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 578999999999999999999999742 455666644
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00014 Score=82.67 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=39.9
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEEC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~ 234 (1119)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~ 90 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVI 90 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 34678888888999999999999999999999999987653 5555543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00021 Score=74.61 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=30.6
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
..++|++++|+|+||||||||+++|++.... ..|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~--~~~~v~~~~~ 58 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE--QGISVCVFHM 58 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCeEEEecc
Confidence 3578999999999999999999999985421 1244555443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00039 Score=79.27 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=32.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 6777665543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.014 Score=66.34 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+=+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00062 Score=72.75 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 186 ILKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 186 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677788776 8999999999999999999999998753
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00048 Score=78.01 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=30.5
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
|+.+.+.+|+.++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999999999999999999873
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00048 Score=78.92 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999974
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0024 Score=71.09 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.++++.-+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788889999999999999999999743
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00062 Score=68.81 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00028 Score=80.24 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=34.6
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
...+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34588999999999999999999999999999999874
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0036 Score=72.84 Aligned_cols=35 Identities=31% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999988653 455544
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0048 Score=68.57 Aligned_cols=28 Identities=46% Similarity=0.625 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
|...++|.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4567899999999999999999998754
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00059 Score=69.60 Aligned_cols=39 Identities=36% Similarity=0.348 Sum_probs=30.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 237 (1119)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47899999999999999999999998743 34 45555543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=76.12 Aligned_cols=71 Identities=15% Similarity=0.139 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC------C---CCcceEEEECCccCCCC---cccceEEEeccCCCCCCCCCHHHH
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK------D---LRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVRET 265 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~------~---~~~~G~I~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~E~ 265 (1119)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|+++.-. ..++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46899999999999999999998531 0 02468999999764211 112233444344344444444455
Q ss_pred HHH
Q 001228 266 LDF 268 (1119)
Q Consensus 266 l~f 268 (1119)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=69.23 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=23.9
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+.++.+.+| +++|+|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344556665 89999999999999999885
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0022 Score=64.85 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999874
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0023 Score=64.75 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00048 Score=83.27 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=38.5
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 566667766 89999999999999999999999998764 67776655
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=68.46 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=24.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 344556564 999999999999999999864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00041 Score=83.56 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=33.3
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE-EEE-ECCcc
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIK-ISGYP 932 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G-~i~-i~g~~ 932 (1119)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4789999999999999999999999996532 233 564 77754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.019 Score=67.48 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=32.8
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..+-|+.+.+=+++|+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777779999999999999999999988887643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00071 Score=71.13 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcce--EEEECCcc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHE 237 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G--~I~~~G~~ 237 (1119)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 5678999999999999999999999988643 56 67776543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0014 Score=75.09 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.++..++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=62.11 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.6
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEEec
Q 001228 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1064 (1119)
Q Consensus 1023 ~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1064 (1119)
.+++++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888766666555543322 1258888898
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=65.35 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=20.9
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788999998887 5689999999999999999974
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0086 Score=70.44 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+.+-+++|+++.|.|++|+|||||+.-++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5777777899999999999999999999988875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0032 Score=65.31 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.-+.|.||+|+|||||+++|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0051 Score=69.01 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=31.8
Q ss_pred hcCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCch
Q 001228 358 VGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1119)
Q Consensus 358 ~~~p~illlDEPtsg-LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 405 (1119)
+.++++||+||+-.- .+..+...+...+..... .+..+|++...+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 356899999998662 244677777788777654 35666776665543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0019 Score=65.84 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865422224777776654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0032 Score=64.70 Aligned_cols=49 Identities=27% Similarity=0.362 Sum_probs=27.9
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCC------CCCeeEEEEEECC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYIEGDIKISG 930 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~------~~g~~~G~i~i~g 930 (1119)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 3788999988887 67999999999999999999732 2234456666665
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0015 Score=68.18 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0012 Score=70.52 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+..|+.+.++|+|||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4678999999999999999888765
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00062 Score=82.33 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=39.9
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
..+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 45788888888 899999999999999999999998543 34677776664
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=68.63 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=25.6
Q ss_pred eccceeeee---CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 883 LHSVSGVFR---PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 883 L~~vs~~i~---~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 666677666 89999999999999999999999753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0022 Score=65.82 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999999999999999999876
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0018 Score=68.55 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEE
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~ 233 (1119)
+.+++|+|||||||||+.+.|++.+.-....+|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876321112566655
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0013 Score=68.26 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.4
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47888888888875 689999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0087 Score=65.61 Aligned_cols=27 Identities=48% Similarity=0.770 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++.-++|.||||+|||||.++|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0022 Score=66.45 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.1
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 4789999999999999999973
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.00077 Score=77.18 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=35.7
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45778888877 999999999999999998864332 344433333221111011234444544333345666
Q ss_pred HHHHH
Q 001228 264 ETLDF 268 (1119)
Q Consensus 264 E~l~f 268 (1119)
+|.-+
T Consensus 101 DTpG~ 105 (361)
T 2qag_A 101 DTPGY 105 (361)
T ss_dssp C----
T ss_pred Eeccc
Confidence 66544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0092 Score=67.90 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=28.3
Q ss_pred eeccce--eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVS--GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs--~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 355543 4689999999999999999999988774
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0022 Score=65.80 Aligned_cols=29 Identities=41% Similarity=0.546 Sum_probs=26.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
++|.+++|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999999998754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=73.36 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCC----------CCeeEEEEEECCccC---ChhhhcceEEEEccCCCCCCCCCHHHHH
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKT----------GGYIEGDIKISGYPK---NQETFARVSGYCEQNDIHSPYVTVYESL 961 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~----------~g~~~G~i~i~g~~~---~~~~~~~~~gy~~q~~~~~~~~tv~e~l 961 (1119)
.++|+|+||+|||||++.|+|... ..+..|.+.++|.+. +....++..++.+|....+...+..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999998532 113458888888642 1122233334444444444444444444
Q ss_pred HHHHHh----hcCCCccHHHHHHHHHHHHHHcCCCC--ccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCC
Q 001228 962 LYSAWL----RLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEP 1033 (1119)
Q Consensus 962 ~~~~~l----~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illLDEP 1033 (1119)
..+... ........ .+..+.+.++..+..- ..++..... ...-+..+- .-.++..+. ...+++ +
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVV-HREKRYDEF-TKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGST-TGGGCHHHH-HHHHHHHCGGGTTSCEE----E
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCC-chhhHHHHH-HHHHHHHhccCCCCcEE----E
Confidence 332100 00011111 2233445555444321 111111000 001111111 113344443 233444 4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 001228 1034 TSGLDARAAAIVMRTVRNTVD 1054 (1119)
Q Consensus 1034 tsgLD~~~~~~i~~~l~~~~~ 1054 (1119)
+|+++-.....+++.+.+...
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 899988888888887777553
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.011 Score=62.58 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=40.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 4455566665 3788888877 67789999999999986
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0023 Score=72.52 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=31.6
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
|+++.+.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.003 Score=64.32 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999974
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0036 Score=71.90 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.1
Q ss_pred eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3446677888999999999999999999987
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0026 Score=73.91 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=37.5
Q ss_pred eceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 001228 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (1119)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 236 (1119)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 567777 89999999999999999999999998764 677777554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0039 Score=64.96 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchh--HHhhcCeEEEEc
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--TYDLFDDIILLS 418 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--~~~~~D~i~lL~ 418 (1119)
+.|+.+|..+++.++.+|+.+.++ .+.+++.....+.+.++.. .+.++|+..+ ...+ ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 678899999999888887654333 2344555555554444321 2445555432 2222 256788887774
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0032 Score=66.55 Aligned_cols=57 Identities=21% Similarity=0.073 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCCCC-CeeEEEEEE--------CCccCCh----hhhcceEEEEccCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKI--------SGYPKNQ----ETFARVSGYCEQND 949 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i--------~g~~~~~----~~~~~~~gy~~q~~ 949 (1119)
+.+++|+|++||||||+.++|++.... -...|++.. +|.++.. ..+++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 468999999999999999999974311 133466655 5555431 12345577777653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.027 Score=63.07 Aligned_cols=139 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred eccce-eeeeCCcEEEEEcCCCCCHHHHHHhHc--------------CCCCCCee-EEEEEECCccCChhhhcceEEEEc
Q 001228 883 LHSVS-GVFRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-EGDIKISGYPKNQETFARVSGYCE 946 (1119)
Q Consensus 883 L~~vs-~~i~~Ge~~~l~G~nGaGKTTLl~~L~--------------g~~~~g~~-~G~i~i~g~~~~~~~~~~~~gy~~ 946 (1119)
|+.+- +-+++|+++.|.|++|+|||||...++ |...+|.. ..-++++...
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~-------------- 152 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG-------------- 152 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS--------------
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC--------------
Q ss_pred cCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcC--
Q 001228 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN-- 1024 (1119)
Q Consensus 947 q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~-- 1024 (1119)
.+...+-......+..+ .+++++.+-+....+.. .+.+.+..++.++.+
T Consensus 153 -------~~~~~~l~~~~~~~g~~-----------~~~~~~~l~~~~~~~~~-----------~~~~~l~~l~~~~~~~~ 203 (322)
T 2i1q_A 153 -------TFRPERIMQMAEHAGID-----------GQTVLDNTFVARAYNSD-----------MQMLFAEKIEDLIQEGN 203 (322)
T ss_dssp -------CCCHHHHHHHHHHHTCC-----------HHHHHHTEEEEECSSHH-----------HHHHHHHTHHHHHHTTC
T ss_pred -------CCCHHHHHHHHHHcCCC-----------HHHHhcCEEEEeCCCHH-----------HHHHHHHHHHHHHhhcc
Q ss_pred -CCeEEEeCCCCCCCH------------HHHHHHHHHHHHHHhC-CCeEEEEec
Q 001228 1025 -PSIIFMDEPTSGLDA------------RAAAIVMRTVRNTVDT-GRTVVCTIH 1064 (1119)
Q Consensus 1025 -p~illLDEPtsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~~H 1064 (1119)
++++++|.-++-... .....+.+.|++++++ |++||++.|
T Consensus 204 ~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 204 NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp EEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.012 Score=65.91 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=34.5
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001228 1022 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1022 ~~~p~illLDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
..++.+||+||+-. .-+..+...+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344778888889988877777788877754
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.011 Score=69.34 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.8
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4777777899999999999999999999887774
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.001 Score=75.07 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=32.1
Q ss_pred eeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 186 ILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 186 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+|+.++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56777777788887 99999999999999999999864
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0041 Score=63.70 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=26.0
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999854
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.031 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.01 Score=64.98 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.5
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.++.-+.|.||+|+|||||+++|+...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3556668999999999999999998643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.00075 Score=77.25 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=27.9
Q ss_pred cceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.+++++++.| +|+|++|+|||||++.|+|.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 345788888877 99999999999999999885
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0037 Score=65.20 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
..+|.+++|+||||||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578899999999999999999998643
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.1 Score=62.26 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=31.4
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+-|+.+.+=+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34567766669999999999999999999988877543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0027 Score=67.90 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPts-gLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D 412 (1119)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+...... -.+++++-+-|.....++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcC
Confidence 445555543 23578899999999976 68776665455444433221 23555555555544444554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.66 E-value=0.004 Score=69.33 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHh--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 001228 343 ISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDSST-TFQICKFLKQMVHILD 393 (1119)
Q Consensus 343 LSGGqkkRvsia~al~--~~p~illlDEPtsgLDs~~-~~~i~~~l~~~~~~~~ 393 (1119)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+++++...+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 4566666 78999998 7888766 5566777777765433
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0027 Score=68.78 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=32.4
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~ 238 (1119)
..+++.++.|+|+|||||||+.+.|+..+. .+.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 356778999999999999999999998764 24566776543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0098 Score=59.38 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0019 Score=71.69 Aligned_cols=44 Identities=30% Similarity=0.226 Sum_probs=35.9
Q ss_pred ec-eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 188 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777766 9999999999999999999999988653 56666644
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.005 Score=63.96 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001228 199 MTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1119)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0046 Score=70.30 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999973
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.1 Score=58.38 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+|..-++|.||+|+|||||.++++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466678999999999999999999876
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.075 Score=60.57 Aligned_cols=30 Identities=40% Similarity=0.629 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+=+++|+++.|.||+|+|||||...++-..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 367999999999999999999998886543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.012 Score=59.72 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.027 Score=75.48 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0024 Score=71.97 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=33.0
Q ss_pred eeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCC
Q 001228 881 QLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+++.+++.+++|++ ++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 378899999999998 999999999999999999973
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0043 Score=64.43 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0068 Score=61.82 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0074 Score=60.27 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0051 Score=63.88 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0073 Score=61.40 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0056 Score=61.41 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987753
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.073 Score=60.51 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345578999999999999999999765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0069 Score=61.28 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0081 Score=61.43 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=25.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
...+|.++.|+|++||||||+.+.|++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999743
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.053 Score=58.25 Aligned_cols=28 Identities=50% Similarity=0.705 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++..-++|.||+|+|||||.++|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445688999999999999999998753
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0088 Score=68.68 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=31.8
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCC---------CCCeeEEEEEECC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRK---------TGGYIEGDIKISG 930 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~---------~~g~~~G~i~i~g 930 (1119)
..+..|..++|+|++|+|||||+++|+|.. +..+..|.+.+.+
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 356788899999999999999999999852 1123457776655
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0079 Score=61.19 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCCC-CCeeEEEEEECCc
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGY 931 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~~-~g~~~G~i~i~g~ 931 (1119)
.+++|+|++|||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 2233466666553
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0032 Score=71.30 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.1
Q ss_pred cceeeccceeeeeCCcE--EEEEcCCCCCHHHHHHhHcCC
Q 001228 879 RLQLLHSVSGVFRPGVL--TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 879 ~~~vL~~vs~~i~~Ge~--~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
...+++.++..++.|++ +.|.||+|+||||+++++++.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588899999999998 999999999999999999974
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.06 Score=61.24 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++..-+.|.||.|+|||||.++|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34556889999999999999999864
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0024 Score=72.28 Aligned_cols=40 Identities=33% Similarity=0.615 Sum_probs=34.8
Q ss_pred ceeeeceEEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 184 VRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4477778888888988 999999999999999999998754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0078 Score=64.18 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=60.71 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998755
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.068 Score=62.18 Aligned_cols=29 Identities=52% Similarity=0.911 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|-.=++|.||||+|||+|.++||+.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45556688999999999999999999864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.029 Score=63.94 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999863
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.025 Score=59.91 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec---------CccHHHHHhhceEeEE
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~~l~l 1080 (1119)
+++++++||.-- |+.. +.+.++.+++.|.+||++-| ..+.++...+|.+..|
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 489999999964 6643 44556666667999999999 5556788889999875
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0093 Score=63.69 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999865
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.2 Score=67.25 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.3
Q ss_pred eeeeceE--EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 185 ~iL~~vs--~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.-|+.+- +=+++|+++.|.||||+|||||...++...
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466665 369999999999999999999988887553
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=59.96 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=59.97 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.01 Score=64.20 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++|+||||||||||-+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998763
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=64.50 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G 235 (1119)
.+.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467899999999999999999987653 24456654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.18 Score=60.20 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=29.0
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-|+.+..-+++|+++.|.|++|+|||||+.-++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 4666666799999999999999999999877763
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.012 Score=61.51 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=31.0
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEE--EEEECC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG--DIKISG 930 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G--~i~i~g 930 (1119)
..+++|.++.|+|++||||||+.+.|++... +..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECC
Confidence 3457899999999999999999999997542 1134 456654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=59.47 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=59.98 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.012 Score=60.99 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=59.72 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=57.90 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001228 199 MTLLLGPPGAGKTTLMLAL 217 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~L 217 (1119)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.018 Score=59.72 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.014 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988753
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.018 Score=58.67 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998765
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=60.38 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 579999999999999999998763
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.015 Score=59.84 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999976654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.019 Score=57.97 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG 219 (1119)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.014 Score=59.07 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999775
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.017 Score=58.57 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+..+.|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.39 E-value=0.012 Score=65.30 Aligned_cols=46 Identities=26% Similarity=0.148 Sum_probs=33.9
Q ss_pred cc-ceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 884 HS-VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 884 ~~-vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
++ +++..+ |++++++|+||+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 778776 999999999999999999999974321 12445554444
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.16 Score=57.57 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344557899999999999999999875
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.12 Score=53.89 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=42.1
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+.+++++||.-- +|.. +++.++.++.. +..+|++=+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999875 6643 33666666553 889999888 89999999999999886
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=58.68 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.067 Score=55.11 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEe---------cCchhHHhhcCeEEEEc
Q 001228 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (1119)
Q Consensus 360 ~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~i~lL~ 418 (1119)
+.+++++||.-- +|+. +++.++.++.. +..+|++=+ .+++++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 6643 35566666654 788888877 77889999999998876
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.021 Score=59.34 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1119 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-18 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 8e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-19 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-15 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-19 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-17 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-05 | |
| d2cdna1 | 181 | c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium | 5e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.001 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.003 | |
| d1akya1 | 180 | c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.003 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.003 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.003 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 5e-28
Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G + +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ ++ T R G+ Q P +T E++ + + ++R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 986 MELVEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++ EL + + + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 129 LKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 1045 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
+M+ ++ + G+TVV H I++ + ++ L + G V L
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.3 bits (206), Expect = 2e-18
Identities = 42/257 (16%), Positives = 89/257 (34%), Gaps = 47/257 (18%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + LK+V+ +K ++GP G+GK+T++ + G++ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 238 LN-----EFVPQRTC--AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
N E R ++ Q +T E ++ ++ +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-------PLIFKYRGAMSGEER 121
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
+ L+ L + + + +SGGQ++R
Sbjct: 122 RK---------------------------RALECLKMAELEERF-ANHKPNQLSGGQQQR 153
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
V L ++ D+ + LDS T +I + LK++ T++V
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARF 211
Query: 411 FDDIILLSEGQIVYQGP 427
+ II L +G++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 7e-28
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 13/221 (5%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ L VS G +T ++G +G+GK+TL++V+ G + G + + K + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDT-------KKRKMFVDEVMELVE 990
+ Q +TV E+LL S +++ K + V++ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L+ G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T + H+ + D L ++ G++I G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.9 bits (233), Expect = 8e-22
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 35/255 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 243 P----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P Q EMTV E L C G L + +++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+L+ L L D G+ +SGGQ K V G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++ MDE G+ I + ++ +T ++ + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMF 224
Query: 419 EGQIVYQGPRDNVLE 433
GQI+ +G + ++
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 106 bits (267), Expect = 2e-26
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 14/215 (6%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ + + G + L+G +GAGKTT + +AG R G I + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL-VELKSLND 996
+ P +TVYE+L+ A+ R D + K ++ + L LK
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLK 134
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ G LS +++ L I L++ P ++ MDEP+ GL + V ++ G
Sbjct: 135 QLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T++ + +L+ G+++ G
Sbjct: 190 TTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 76.5 bits (188), Expect = 6e-16
Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 42/252 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEF 241
++ +K + V ++ L+G GAGKTT + A+AG + + ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ + A + + E+TV E L K I
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAY---------------------NRKDKEGIK 116
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ + L + G +SGG+++ + G L+
Sbjct: 117 RDLEWIF-------------SLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+L MDE S GL ++ + ++++ + T+++ Q A + +L GQ
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV-EQNALGALKVAHYGYVLETGQ 216
Query: 422 IVYQGPRDNVLE 433
IV +G +L+
Sbjct: 217 IVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 105 bits (264), Expect = 5e-26
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETF 938
++ ++ + G L+G SG GKTT + ++AG + EG I
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R Q+ P++TVYE++ + ++ + V EL++++ L +
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGR 1057
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 134 P-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 1058 TVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
T + H D EA D + ++ R G+++ G
Sbjct: 189 TTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 100 bits (250), Expect = 4e-24
Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +K +LLGP G GKTT + +AG G+I + ++
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P+ R + + Q MTV E + F + + E +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPKDEIDKRV------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ ++L ++ + +SGGQ++RV +V
Sbjct: 118 -----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL MDE + LD+ + +K++ L VT I E + D I +++ GQ
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++ G V + P VA F+
Sbjct: 215 LLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 1e-25
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 928 ISGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
++ +++ T AR G Q+ TV+ ++ L + + K+R V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
LV L +DS S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1047 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+++ G T++ H+ + + D + ++ G +I
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 92.6 bits (230), Expect = 2e-21
Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 49/262 (18%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
R+++ L +VS V ++ ++G GAGK+TL+ + G + G E
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 238 LNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L R I QH TV + + E +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEVK 118
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ +L ++GL D+ + +SGGQK+RV
Sbjct: 119 RRV------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L VL DE ++ LD +TT I + LK + L +T+++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 412 DDIILLSEGQIVYQGPRDNVLE 433
D + ++S G+++ Q V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 103 bits (258), Expect = 8e-25
Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
+C Q P T+ E++++ + K ++ + +++++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ D++L+L + G + G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.0 bits (210), Expect = 2e-18
Identities = 51/331 (15%), Positives = 109/331 (32%), Gaps = 88/331 (26%)
Query: 103 LLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNV 162
++E++ EE + L++++ + V + HL + G+
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 163 ALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
+LK+++ ++ M + G G+GKT+L++ + G+L
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 223 KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
G I + G F Q + T++E + F
Sbjct: 88 AS---EGIIKHSGR--VSFCSQFSWIM---------PGTIKENIIFGVS----------- 122
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
+ + +KA + I +T++G+
Sbjct: 123 ------------YDEYRYKSVVKACQLQ-----------QDITKFAEQDNTVLGEGGVT- 158
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ+ R++ + A++ +D LD T Q+ + + + T I+ +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK 217
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E D I++L +G + G +
Sbjct: 218 --MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 100 bits (251), Expect = 3e-24
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 14/216 (6%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
+ ++L +S G + L+G +GAGKTT + +++ + + G + + +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
++ Y + + E L + A SS + ++ V+ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T++ + H ++ D + L+ G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 85.4 bits (211), Expect = 5e-19
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 54/276 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + +Y+ + + M E L F EI
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS--------------------SSSEI 110
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+ + + +I GL V S G +++ L+
Sbjct: 111 EEMV--------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+ +DE ++GLD ++ K LKQ +T++V+ E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNG 209
Query: 421 QIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
IV G + + + + + + + +EV
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.5 bits (245), Expect = 6e-24
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L ++ G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+ + I ++V + L A L K K + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1059
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1060 VCTIHQPSI 1068
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.0 bits (184), Expect = 1e-15
Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 47/220 (21%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S +L+ ++ ++ + GP G GKTTL+ ++ L G+I Y G +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + ++ + + +++V + L GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+ + + + +S G +RV L+
Sbjct: 111 -----------------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLL 141
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A + +D+ +D + ++ K + +++ + +I
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99 bits (249), Expect = 7e-24
Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 28/229 (12%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
++L VS R G + +++G SG+GK+T + + + + G I I+
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 937 TFARVS-----------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
Q+ ++TV E+++ + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+ V + LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
+R ++ + G+T+V H ++ A ++ L G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 77.6 bits (191), Expect = 3e-16
Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 36/272 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+LK VS + + ++G G+GK+T + + G I G +N
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEID 301
+ ++ + L L V + L + ++ E +
Sbjct: 71 DKDGQLKVAD----------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--------E 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
A ++ + ++ + L +G+D A + +SGGQ++RV+ L
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEP 168
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL DE ++ LD ++ + ++Q+ TM+V + + +I L +G+
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGK 226
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
I +G + + F + P+ + FL+
Sbjct: 227 IEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (237), Expect = 2e-22
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFA 939
L +SG R G + L+G +GAGK+TL+ +AG +G +G I+ +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
Y Q V+ L K R +++V + L
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST 123
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G +V + H + LLK GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 74.6 bits (183), Expect = 2e-15
Identities = 51/258 (19%), Positives = 84/258 (32%), Gaps = 60/258 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSATK 69
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
AY+SQ V L + +R E
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQH------------DKTRTELL----------- 106
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V L LD +SGG+ +RV +++
Sbjct: 107 ----------------NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITP 145
Query: 363 -------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
+L +DE LD + + K L + + ++++ T
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIVMSSHDLN-HTLRHAHRAW 203
Query: 416 LLSEGQIVYQGPRDNVLE 433
LL G+++ G R+ VL
Sbjct: 204 LLKGGKMLASGRREEVLT 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 94.9 bits (236), Expect = 4e-22
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 12/219 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
+ L +++ G AL+G SG+GK+T+ ++ EG I + G+
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ QN ++ R + + + ++
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 141
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D+++G G LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 142 L--DTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE- 197
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ RT + H+ S E DE+++++ G ++ G
Sbjct: 198 LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.4 bits (214), Expect = 3e-19
Identities = 50/256 (19%), Positives = 98/256 (38%), Gaps = 44/256 (17%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
R V L++++ + + L+G G+GK+T+ + D G I GH+L E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 241 FVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + A +SQ+ + T ++ + A
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
I +D DT++G E +SGGQ++R+ L
Sbjct: 135 --------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ + +L +DE ++ LD+ + I L ++ + T +V + T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVV 223
Query: 418 SEGQIVYQGPRDNVLE 433
+G IV +G +L
Sbjct: 224 EDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.1 bits (234), Expect = 6e-22
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
+ + + D++S+ ++ +L ++ G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSF-----------QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
TL++++ G I I G+ + G Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLG 115
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
+V + + + L D+ VG GV LS Q++RL+IA + N
Sbjct: 116 RPTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 172
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
P I+ +DE TS LD + +I+ + + RT + H+ S D++++++ G
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NG 228
Query: 1085 RVIYAGP 1091
++ G
Sbjct: 229 HIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 2e-21
Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 43/255 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILKD++ ++ +G G GK+TL+ + SG+I GH + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 241 FVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
F+ I Q D TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I+ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE ++ LD + I + L + D T ++ + T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIE 226
Query: 419 EGQIVYQGPRDNVLE 433
G IV G ++
Sbjct: 227 NGHIVETGTHRELIA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.8 bits (233), Expect = 7e-22
Identities = 49/256 (19%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
+ V +L+ ++ ++P +T L+GP G+GK+T+ L G++ G L +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 241 FVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + R A + Q + +++E + + G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
P ++ A +G I GL DT V + + +SGGQ++ V L
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ VL +D+ ++ LD+++ Q+ + L + ++++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 418 SEGQIVYQGPRDNVLE 433
G I G ++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 12/220 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
+ +L ++ RPG +TAL+G +G+GK+T+ +L G + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ 80
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
R Q ++ E++ Y + + + T + L
Sbjct: 81 YEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK-SGAHSFISGLP 138
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D+ V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + +
Sbjct: 139 QGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197
Query: 1053 VD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ R+V+ S + E D +L L+ GG + G
Sbjct: 198 PERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 1e-21
Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 13/219 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
D +L +++ + G + ++G SG+GK+TL ++ + + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLAL 69
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ R G Q D ++ +++ + V+ + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK- 184
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ GRTV+ H+ S + D +++++ G+++ G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 79.6 bits (196), Expect = 6e-17
Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 39/254 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K S IL +++ +K + ++G G+GK+TL + + +G++ GH+L
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLA 68
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
P + + L S + + P
Sbjct: 69 LADPNWLRRQVGVVLQDNV-----------------------LLNRSIIDNISLANPGMS 105
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ + A +AG + + E G+SGGQ++R+ LV
Sbjct: 106 VEKVIYAAKLAG---------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L DE ++ LD + I + + ++ T+I+ + T D II++ +
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEK 212
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG +L
Sbjct: 213 GKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 3e-21
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA 939
+ + ++ G +G SG GK+TL+ ++AG +T + + I N A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPA 70
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
G Q+ P+++V E++ + L + +R V++V E+++L L D
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRK 127
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1057
LS QR+R+ I LVA PS+ +DEP S LDA + + GR
Sbjct: 128 -----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T++ H D++++L GRV G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.1 bits (205), Expect = 3e-18
Identities = 56/271 (20%), Positives = 99/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V + KD++ + + +GP G GK+TL+ +AG SG + +N+
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 243 PQRTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P + Q + ++V E + F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE--------VINQRV--------- 111
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ V ++L L D +SGGQ++RV G LV
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+V +DE + LD++ Q+ + ++ L TMI E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ G E + + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 87.3 bits (216), Expect = 1e-19
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
+ +S + G L+G SG GKTT + ++AG + G I K+ P+
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 941 VS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
Q+ P++TVY+++ + LR + +R V EV EL+ L L +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNR 135
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1056
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 KP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
T + H D EA D + ++ R G + G
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 80.7 bits (199), Expect = 2e-17
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 44/270 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V ++++S VK +LLGP G GKTT + +AG G+I + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ + L L ++ R+E +
Sbjct: 72 KGIFVPPKDRDIAMVFQSY---ALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-------- 120
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
V ++LGL + + +SGGQ++RV G +V
Sbjct: 121 ----------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V MDE + LD+ ++ LK++ L VT I E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVL 218
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G D V + P VA F+
Sbjct: 219 QQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.5 bits (214), Expect = 2e-19
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK 933
+D Q+L +S +P + A G SG GK+T+ +L + T G I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI-- 69
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ E + G+ Q+ D+ F +E + +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ- 128
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 129 -LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
GRT + H+ S D++ +++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 42/253 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +IL+D+S +P+ + GP G GK+T+ L +G+IT G ++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70
Query: 243 PQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + I D T+RE L + + +L+ PD
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL- 129
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+T VG E ISGGQ++R+ +
Sbjct: 130 -------------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRN 157
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+L +DE + LDS + + K L ++ T +V + T D I + +G
Sbjct: 158 PKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKG 213
Query: 421 QIVYQGPRDNVLE 433
QI G + ++
Sbjct: 214 QITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.1 bits (210), Expect = 6e-19
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQE 936
++ L +V+ G ++G SGAGKTT M ++AG + G + D ++
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 937 T--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R G Q P +T +E++ + S + +KR V+EV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1053
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T++ H P+ DIF D + +L G+++ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.4 bits (195), Expect = 6e-17
Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 57/279 (20%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG +G++ + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 240 EFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
R + Q + +T E + F + + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR--- 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ V KIL + + R +SG Q++RV
Sbjct: 121 ------------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413
LV ++L +DE + LD+ +K++ L VT++V PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ +L +G++V G + + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 77.0 bits (189), Expect = 3e-16
Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S+K L ++S V+ ++LGP GAGKT + +AG D SG+I G ++
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 239 NEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P++ A++ Q+ M V++ L+F R + +R
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ L ++ D +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + LD T + L + +T++ E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201
Query: 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+G+++ G + E FE P VA F+
Sbjct: 202 MDGKLIQVGKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.2 bits (179), Expect = 6e-15
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKNQETFARV 941
L ++S G ++G +GAGKT ++++AG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
+ QN P++ V ++L + ++ K V + ++++ L D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 1e-14
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 20/204 (9%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQN 948
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
P+++VY ++ Y +V+ +R V E+ E + + L D + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1068 IDIFEAFDELLLLKRGGRVIYAGP 1091
+ DE+ ++ GR++ G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 3e-13
Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 55/252 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP GAGK+ + +AG + D G++ G ++ P +R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+V + + R + R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+ + D +SGG+++RV LV +L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGF 440
+ + L+ + DV ++ E L D++ ++ G+IV +G +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 441 KCPERKGVADFL 452
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 7e-06
Identities = 25/195 (12%), Positives = 42/195 (21%), Gaps = 36/195 (18%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
+ + S + V + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
+I +DE + + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1077 LLLLKRGGRVIYAGP 1091
+ L G +I P
Sbjct: 149 IRRLP-GAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.3 bits (98), Expect = 7e-05
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
++ G PG GKTTL+ + +LGK + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 261 TVRETLDFSGRCLGVGTRYELL 282
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.9 bits (92), Expect = 5e-04
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
LLLGPPGAGK T + LA KLG ++G++ E + Y+ DL ++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 261 TVR 263
T
Sbjct: 64 TNE 66
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLH 256
+RM +L G AGK+ ++ L L + A G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 257 HGE 259
Sbjct: 63 SIG 65
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 0.002
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-------LRASGKITYCGHEL-NEF 241
+ +V + L+ P GAGK+ L L LA ++ +G + Y E
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFS 269
+ R A + + L
Sbjct: 82 IHHRLHALGAHLSAEERQAVADGLLIQP 109
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 38.9 bits (90), Expect = 0.003
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 180 KKRSVRILKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
LK V I K R L GP +GKTTL AL G
Sbjct: 137 DSVVYDFLKCMVYNIPKK-RYWLFKGPIDSGKTTLAAALLELCGGKA 182
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (87), Expect = 0.003
Identities = 16/68 (23%), Positives = 25/68 (36%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+L+GPPGAGK T L + A+G + + + Q L ++
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 261 TVRETLDF 268
V D
Sbjct: 66 MVNMIKDE 73
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
++ ++ GP G GK+T LA +L G I
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.003
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022
+A L + + + + L K + G V+ L+ L A+
Sbjct: 299 GNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFAINSY 352
Query: 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078
+DE + LD + +R + + + +FE D L+
Sbjct: 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 38.4 bits (88), Expect = 0.003
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
++ L V+ LL G PG+GKT+L A+ +
Sbjct: 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 56
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.003
Identities = 11/79 (13%), Positives = 23/79 (29%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
G ++ +T + G GKT + LA + G + E +
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 251 SQHDLHHGEMTVRETLDFS 269
V + + ++
Sbjct: 77 VAERYGLSGSDVLDNVAYA 95
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+R L GPPG GKTTL+ + L
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSS 28
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1119 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.34 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.3 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.91 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.8 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.53 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.41 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.14 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.98 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.65 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.37 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.26 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.25 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.94 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.84 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.68 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.57 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.39 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.37 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.35 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.31 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.3 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.26 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.19 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.17 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.02 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.93 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.91 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.86 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.8 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.76 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.7 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.64 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.58 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.52 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.51 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.51 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.49 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.48 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.27 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.23 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.2 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.19 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.13 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.1 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.08 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.06 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.05 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.98 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.96 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.92 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.82 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.81 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.74 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.73 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.71 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.68 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.66 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.61 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.6 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.58 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.57 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.57 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.56 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.53 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.52 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.5 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.48 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.47 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.46 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.46 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.44 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.37 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.29 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.28 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.27 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.26 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.21 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.16 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.13 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.11 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.1 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.07 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.07 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.05 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.05 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.05 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.05 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.95 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.93 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.92 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.92 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.9 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.86 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.86 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.85 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.85 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.84 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.84 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.84 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.81 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.81 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.79 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.75 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.69 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.64 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.62 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.42 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.4 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.37 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.17 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.14 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.13 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.12 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.02 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.98 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.95 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.83 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.75 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.67 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.65 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.62 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.55 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.54 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.52 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.48 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.47 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.46 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.38 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.36 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.29 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.29 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.27 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.17 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.12 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.05 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.05 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.03 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.98 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.97 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.88 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.83 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.83 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.75 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.72 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.71 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.66 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.64 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.62 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.62 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.52 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.37 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.29 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.29 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.28 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.19 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.17 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.16 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.15 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.14 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.13 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.09 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.02 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.99 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.93 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.93 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.9 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.84 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.82 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.7 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.7 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.7 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.7 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.68 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.67 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.63 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.63 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.6 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.54 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.51 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.49 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.47 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.4 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.4 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.39 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.36 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.31 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.28 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.28 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.27 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.19 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.18 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.18 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.07 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.04 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.0 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.97 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.94 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.9 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.88 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.84 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.84 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.79 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.79 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.75 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.71 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.65 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.62 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.6 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.58 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.55 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.5 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.48 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.42 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.26 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.15 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.07 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.06 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.06 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.04 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.87 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.82 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.79 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.78 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.76 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.75 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.58 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.54 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.52 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.45 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.43 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.41 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 88.38 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.29 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.27 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.11 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.03 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.93 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.9 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.89 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.89 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.86 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.83 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.81 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.73 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.73 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.69 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.67 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.66 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.59 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 87.56 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.52 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.48 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.36 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.34 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.32 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.2 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.18 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.17 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.14 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.09 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 86.99 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.94 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.89 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.88 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.85 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.8 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.76 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.53 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.51 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 86.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.22 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.2 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.13 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 86.09 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.06 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.99 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.91 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.89 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.82 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.81 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 85.73 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.72 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.63 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.53 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.52 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.51 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.47 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 85.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.22 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.04 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.04 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 84.99 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.86 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.75 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.62 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.48 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.43 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.2 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.81 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 83.66 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.14 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.01 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 82.61 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.39 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 82.26 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.05 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.92 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.86 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.8 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.55 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.32 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.19 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.8 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.75 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.58 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.54 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.44 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 80.3 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 80.3 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-47 Score=400.64 Aligned_cols=208 Identities=25% Similarity=0.357 Sum_probs=150.2
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1119)
.+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.+||+++....+ ++.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 467999999999999999999999999999999999999997 9999999999876654 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|+.++++.. ..+...+++++++.+||++..|+.+.+
T Consensus 89 v~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhCCChhhhhCChhh----
Confidence 999999986654321 011233567899999999999999987
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..|.|+|++.| ...++.++||+|++|++|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998888888888765 4569999999999999999
Q ss_pred EEEEcChhHHHH
Q 001228 422 IVYQGPRDNVLE 433 (1119)
Q Consensus 422 iv~~G~~~~~~~ 433 (1119)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999854
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.7e-47 Score=402.89 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=177.0
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~ 954 (1119)
.|++.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...+|.+|||||++.+++.
T Consensus 15 ~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 92 (239)
T d1v43a3 15 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 92 (239)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred EECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEEeechhhccc
Confidence 3456789999999999999999999999999999999999877 468999999998754 2345679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+||+||+.|...++ ..+.++.++.++++++.++|.++.++. +.+||||||||++|||||+.+|+||||||||
T Consensus 93 ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRvaiAraL~~~P~iLllDEPt 164 (239)
T d1v43a3 93 MTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 164 (239)
T ss_dssp CCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred chHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence 99999999876654 345677788899999999999998887 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..|++.|+++.++ |+|||+||||++ +..+.||++++|.+ |++++.|+..
T Consensus 165 s~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~~ 222 (239)
T d1v43a3 165 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 222 (239)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999654 999999999985 57788999999975 8999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-47 Score=402.15 Aligned_cols=206 Identities=27% Similarity=0.364 Sum_probs=146.7
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-hhcceEEEEccCCCCCCC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPY 954 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gy~~q~~~~~~~ 954 (1119)
.|++.++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..+|.+|||+|++.+++.
T Consensus 9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (232)
T d2awna2 9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 86 (232)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeeccccccccc
Confidence 3456789999999999999999999999999999999999876 4689999999987543 345679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001228 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1119)
Q Consensus 955 ~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPt 1034 (1119)
+||+||+.|+..++. ...++.++++.++++.++|.++.++.+ .+|||||||||+|||||+.+|+||||||||
T Consensus 87 ~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 87 LSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp ---------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTT
T ss_pred hhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999999999876553 334456677999999999999988874 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1035 SGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
+|||+.++..|++.|+++. +.|.|||++|||++ +....||++++|. +|++++.|+..
T Consensus 159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~~ 216 (232)
T d2awna2 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 216 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEeCHH
Confidence 9999999999999999986 45999999999975 5777899999997 58999999853
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-46 Score=399.01 Aligned_cols=207 Identities=24% Similarity=0.359 Sum_probs=178.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1119)
.+.+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++....+ ++.+|||+|++.+|+.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccch
Confidence 356999999999999999999999999999999999999997 9999999999876544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCC
Q 001228 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1119)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 341 (1119)
|+||+.|.++.++... . +...+++++++.+||++.+|..+.+
T Consensus 95 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 136 (239)
T d1v43a3 95 VYENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYPAQ---- 136 (239)
T ss_dssp HHHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCTTT----
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCChhh----
Confidence 9999999876654210 0 1223567899999999999998877
Q ss_pred CCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCe
Q 001228 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1119)
Q Consensus 342 GLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~ 421 (1119)
|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++.+..|.|+|+++|+ ..++.++||+|++|++|+
T Consensus 137 -LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 137 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp -CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999988778888887665 568999999999999999
Q ss_pred EEEEcChhHHH
Q 001228 422 IVYQGPRDNVL 432 (1119)
Q Consensus 422 iv~~G~~~~~~ 432 (1119)
++++|+++++.
T Consensus 215 iv~~G~~~el~ 225 (239)
T d1v43a3 215 LLQIGSPTEVY 225 (239)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999984
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.2e-46 Score=399.08 Aligned_cols=205 Identities=26% Similarity=0.339 Sum_probs=182.3
Q ss_pred ccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh-------hhcceEEEEccC
Q 001228 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-------TFARVSGYCEQN 948 (1119)
Q Consensus 876 ~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-------~~~~~~gy~~q~ 948 (1119)
.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+|||+|+
T Consensus 12 ~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~ 89 (240)
T d1g2912 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhcccccccceecccc
Confidence 3455779999999999999999999999999999999999877 4689999999875321 124679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001228 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1119)
Q Consensus 949 ~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 1028 (1119)
+.++|.+||+||+.|+..++. .+.++.++++.++++.++|.++.++.+ .+||||||||++|||||+.+|+||
T Consensus 90 ~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iL 161 (240)
T d1g2912 90 YALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVF 161 (240)
T ss_dssp CCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred hhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999987663 456677888999999999999888874 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1029 lLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...||++++|.+ |++++.|+.
T Consensus 162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~ 224 (240)
T d1g2912 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (240)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999765 999999999975 57778999999975 899999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.6e-46 Score=393.43 Aligned_cols=219 Identities=24% Similarity=0.399 Sum_probs=187.1
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|+++|+++.++.. .....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEeEEEEeCCC---------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcC
Confidence 4677877665421 122458999999999999999999999999999999999876 46899999999874
Q ss_pred h---hh---h-cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-ccccccCCCCCCC
Q 001228 935 Q---ET---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSG 1006 (1119)
Q Consensus 935 ~---~~---~-~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~ 1006 (1119)
. .. + ++.+|||+|++.++|.+||+||+.++..++.....+.++..+.+.++++.++|.+ +.+.. +.+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----p~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----hhh
Confidence 3 11 2 3469999999999999999999999987765556667777788999999999965 46665 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcE
Q 001228 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1119)
Q Consensus 1007 LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1119)
||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++.++ |+|||++|||+ ++...|||+++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH--HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999755 99999999996 45678999999975 89
Q ss_pred EEEecCC
Q 001228 1086 VIYAGPL 1092 (1119)
Q Consensus 1086 v~~~g~~ 1092 (1119)
|+++|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.4e-46 Score=395.59 Aligned_cols=202 Identities=24% Similarity=0.343 Sum_probs=181.9
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHH
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.+|+||||+|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.+|||+|++.+||.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 3899999999999999999999999999999999999997 9999999999977654 46799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+.+.++... ..+++++++.+||++..|..+++ |
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChhh-----C
Confidence 99999876543211 12356788999999999999887 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..|.|+|++.|. ..++.++||+|++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd-~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC-HHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999988778888777655 56899999999999999999
Q ss_pred EEcChhHHH
Q 001228 424 YQGPRDNVL 432 (1119)
Q Consensus 424 ~~G~~~~~~ 432 (1119)
++|+++++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999985
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.1e-46 Score=398.65 Aligned_cols=215 Identities=26% Similarity=0.391 Sum_probs=188.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|+++|+++.++ .++..+|+||||+|++||++||+||||||||||+++|+|+.. +.+|+|.++|.++.
T Consensus 4 i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-----------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEee
Confidence 57778776553 134579999999999999999999999999999999999876 45899999998753
Q ss_pred h------hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 Q------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~------~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
. ...+|.+||++|++.++|.+||+||+.|+...+ ..+.++.++.++++++.++|.++.++.+ .+||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred cCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCC
Confidence 2 223567999999999999999999999986543 4556777888999999999999888885 4799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.+.||++++|.+ |+++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv 220 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLV 220 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999654 999999999975 57788999999975 8999
Q ss_pred EecCC
Q 001228 1088 YAGPL 1092 (1119)
Q Consensus 1088 ~~g~~ 1092 (1119)
+.|++
T Consensus 221 ~~g~~ 225 (242)
T d1oxxk2 221 QVGKP 225 (242)
T ss_dssp EEECH
T ss_pred EEcCH
Confidence 99985
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.7e-46 Score=395.39 Aligned_cols=208 Identities=28% Similarity=0.355 Sum_probs=183.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc-------ccceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~ 255 (1119)
.+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchh
Confidence 356999999999999999999999999999999999999997 999999998875332 1467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 335 (1119)
++|.+||+||+.|..+.++... .+...+++++++.+||++..|..+
T Consensus 92 L~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred hcchhhhhHhhhhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCh
Confidence 9999999999999877654211 012235788999999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 336 g~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..|.|+|+++|. .+++.++||+|+
T Consensus 138 ~~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~ 211 (240)
T d1g2912 138 RE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIA 211 (240)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEEE
Confidence 87 999999999999999999999999999999999999999999999988778888877654 568999999999
Q ss_pred EEcCCeEEEEcChhHHHH
Q 001228 416 LLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1119)
+|++|++++.|+++++.+
T Consensus 212 vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEEcCHHHHHh
Confidence 999999999999999853
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-46 Score=396.20 Aligned_cols=219 Identities=24% Similarity=0.314 Sum_probs=188.2
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++|++++++.. ....++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEee
Confidence 4677777655421 122468999999999999999999999999999999999877 46899999999863
Q ss_pred h---h---hhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCC
Q 001228 935 Q---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1119)
Q Consensus 935 ~---~---~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 1008 (1119)
. . .+++.+|||||++.+++.+||+||+.|+..++. .+.++.++.+.++++.++|.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1 345679999999999999999999999876653 344566778999999999999888874 4799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEE
Q 001228 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1119)
Q Consensus 1009 ~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~ 1087 (1119)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++...||++++|.+ |+|+
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999975 56678999999975 8999
Q ss_pred EecCCCC
Q 001228 1088 YAGPLGH 1094 (1119)
Q Consensus 1088 ~~g~~~~ 1094 (1119)
+.|+..+
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
Confidence 9998753
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-45 Score=393.51 Aligned_cols=206 Identities=25% Similarity=0.322 Sum_probs=183.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc------cceEEEeccCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1119)
..++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l 93 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC
T ss_pred eEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhcccccccccccc
Confidence 457999999999999999999999999999999999999997 9999999999876543 2569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
++.+||+||+.|+.+..+... .+...+++++|+.+||++.+|..++
T Consensus 94 ~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~~ 139 (240)
T d3dhwc1 94 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS 139 (240)
T ss_dssp CTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCBS
T ss_pred CCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999999876554211 1122356789999999999999988
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.++.|.|+|+++| ...++..+||+|++
T Consensus 140 ~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~v 213 (240)
T d3dhwc1 140 N-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAV 213 (240)
T ss_dssp C-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcC-CHHHHHHhCCEEEE
Confidence 7 99999999999999999999999999999999999999999999998877888877765 45689999999999
Q ss_pred EcCCeEEEEcChhHH
Q 001228 417 LSEGQIVYQGPRDNV 431 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (1119)
|++|++++.|+++++
T Consensus 214 l~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 214 ISNGELIEQDTVSEV 228 (240)
T ss_dssp EETTEEEEEEETTTT
T ss_pred EECCEEEEECCHHHH
Confidence 999999999999987
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.2e-46 Score=395.64 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=184.0
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc------ccceEEEeccCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~ 256 (1119)
...+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999997 999999999875422 24579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCccccccccc
Q 001228 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1119)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 336 (1119)
+|.+||+||+.|+.+..+... .+.+.+++++++.+||++..|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCCH----------------------------------HHHHHHHHHHHhhcChHhhhhCChh
Confidence 999999999999876543210 0122356789999999999999998
Q ss_pred CccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 337 ~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.++.|.|+|+++|. ..++.++||+|++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC-HHHHHHhCCEEEE
Confidence 7 999999999999999999999999999999999999999999999987778888877665 5689999999999
Q ss_pred EcCCeEEEEcChhHHHH
Q 001228 417 LSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (1119)
|++|++++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999853
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-45 Score=390.49 Aligned_cols=197 Identities=23% Similarity=0.298 Sum_probs=176.2
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.++|.+||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccchhHhcceeeccccccCccccHHH
Confidence 38999999999999999999999999999999999876 459999999998754 234567999999999999999999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~ 1039 (1119)
|+.|+..++.... .+++.++++.+++.++.++.+ .+|||||||||+|||||+.+|+||||||||+|||+
T Consensus 92 nl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHhhccccH------HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCH
Confidence 9999987764321 235889999999999998874 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCC
Q 001228 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1119)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~ 1092 (1119)
.++..+++.|+++.+ .|.|||++||+++ +....||++++|.+ |++++.|+.
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999865 5999999999985 67788999999975 899999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.9e-45 Score=388.61 Aligned_cols=207 Identities=22% Similarity=0.305 Sum_probs=184.5
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh--hhhcceEEEEccCCCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHS 952 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gy~~q~~~~~ 952 (1119)
+.|+++++|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||||++.++
T Consensus 10 k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~ 87 (238)
T d1vpla_ 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 87 (238)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeEeeeccccC
Confidence 34567789999999999999999999999999999999999876 468999999998643 34567899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 953 ~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
+.+|+.||+.|...++. ....+..+.++++++.++|.+..++.+ .+||||||||++|||||+.+|+||||||
T Consensus 88 ~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~iA~al~~~p~illLDE 159 (238)
T d1vpla_ 88 RNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDE 159 (238)
T ss_dssp TTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999887763 335556677899999999998888874 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||+|||+.++..|+++|++++++|+|||++||+++ ++...||++++|. +|++++.|++.
T Consensus 160 Pt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~~ 218 (238)
T d1vpla_ 160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTVE 218 (238)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999999999989999999999986 6777899999997 48999999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.9e-44 Score=380.82 Aligned_cols=205 Identities=20% Similarity=0.233 Sum_probs=176.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc-------ceEEEeccCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-------RTCAYISQHDL 255 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q~d~ 255 (1119)
...+|+||||+|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.....+ +.+|||+|++.
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~ 93 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred eEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence 456899999999999999999999999999999999999997 99999999998765432 45999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcc-ccccc
Q 001228 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTM 334 (1119)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 334 (1119)
++|.+||+||+.|+......+.. +. .+....+.+.|+.+||++ .+|..
T Consensus 94 l~~~~tv~eni~~~~~~~~~~~~--------------------~~-----------~~~~~~~~~~l~~~~L~~~~~~~~ 142 (230)
T d1l2ta_ 94 LIPLLTALENVELPLIFKYRGAM--------------------SG-----------EERRKRALECLKMAELEERFANHK 142 (230)
T ss_dssp CCTTSCHHHHHHHHHHTCCSSCC--------------------CH-----------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred hCcCccHHHHHhHHHHHhccCCC--------------------CH-----------HHHHHHHHHHHHhhchhhhhhcCC
Confidence 99999999999998765432210 00 011223567889999976 57888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeE
Q 001228 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1119)
Q Consensus 335 vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1119)
+.+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..|.|+|+++|++ .+ .++||+|
T Consensus 143 p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~-a~~~drv 215 (230)
T d1l2ta_ 143 PNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NV-ARFGERI 215 (230)
T ss_dssp GGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HH-HTTSSEE
T ss_pred hhh-----CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HH-HHhCCEE
Confidence 877 9999999999999999999999999999999999999999999999888888998888764 34 4899999
Q ss_pred EEEcCCeEEEEcCh
Q 001228 415 ILLSEGQIVYQGPR 428 (1119)
Q Consensus 415 ~lL~~G~iv~~G~~ 428 (1119)
++|++|+|+++|+.
T Consensus 216 ~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 216 IYLKDGEVEREEKL 229 (230)
T ss_dssp EEEETTEEEEEEEC
T ss_pred EEEECCEEEEeccC
Confidence 99999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-44 Score=388.89 Aligned_cols=216 Identities=21% Similarity=0.320 Sum_probs=181.2
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---hh-cceEEEEccCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---TF-ARVSGYCEQNDI 950 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~~-~~~~gy~~q~~~ 950 (1119)
+.|++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... .. +..++|+||+..
T Consensus 14 k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~ 91 (240)
T d1ji0a_ 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR 91 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC
T ss_pred EEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHHHhcccccCcccc
Confidence 34456789999999999999999999999999999999999876 4589999999987432 22 334899999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc-CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001228 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 1029 (1119)
+++.+||+||+.+....+.. ....++.++++++.+ ++.+..++.+ .+|||||||||+|||||+.+|+|||
T Consensus 92 l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~Qrv~iAraL~~~P~lLl 162 (240)
T d1ji0a_ 92 IFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLM 162 (240)
T ss_dssp CCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCch-----hhCCHHHHHHHHHHHHHHhCCCEee
Confidence 99999999999887654322 223344466777776 6777777774 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHh
Q 001228 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYF 1103 (1119)
Q Consensus 1030 LDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f 1103 (1119)
|||||+|||+.++..|+++|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+..+ ..+.+.+.|
T Consensus 163 lDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~~el~~~~~v~~~y 236 (240)
T d1ji0a_ 163 MDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKASELLDNEMVRKAY 236 (240)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHHHHHTCHHHHHHH
T ss_pred ecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhcCHHHHHHh
Confidence 99999999999999999999999988999999999985 67788999999975 89999998754 234566655
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.7e-44 Score=390.05 Aligned_cols=211 Identities=23% Similarity=0.248 Sum_probs=181.4
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChh---h-hcceEEEEccCCC
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---T-FARVSGYCEQNDI 950 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~-~~~~~gy~~q~~~ 950 (1119)
+.|++.++|+||||++++||++||+||||||||||+++|+|... +.+|+|.++|.++... . .++.++|+||++.
T Consensus 12 k~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~ 89 (254)
T d1g6ha_ 12 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQ 89 (254)
T ss_dssp EEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCG
T ss_pred EEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhHHHHHHhcCCccCCccc
Confidence 34556789999999999999999999999999999999999876 4589999999987432 2 2345999999999
Q ss_pred CCCCCCHHHHHHHHHHhhc----------CCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHH
Q 001228 951 HSPYVTVYESLLYSAWLRL----------SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE 1020 (1119)
Q Consensus 951 ~~~~~tv~e~l~~~~~l~~----------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a 1020 (1119)
+++.+||+||+.++...+. ......+...+.+.++++.+++.+..++.+ .+|||||||||+||||
T Consensus 90 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~Qrv~iAra 164 (254)
T d1g6ha_ 90 PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRA 164 (254)
T ss_dssp GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHH
T ss_pred cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch-----hhCCcHHHHHHHHHHH
Confidence 9999999999988643221 112233455567889999999998888875 4799999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1021 L~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
|+.+|++|||||||+|||+.++..|++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+..+
T Consensus 165 L~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 165 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGEE 236 (254)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESHH
T ss_pred HHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecHHH
Confidence 99999999999999999999999999999999989999999999987 67889999999975 89999998643
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.7e-44 Score=385.40 Aligned_cols=208 Identities=22% Similarity=0.279 Sum_probs=180.1
Q ss_pred cccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh----------------hhh
Q 001228 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----------------ETF 938 (1119)
Q Consensus 875 ~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----------------~~~ 938 (1119)
+.|++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...
T Consensus 10 k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T d1b0ua_ 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 87 (258)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccccHhHHHHH
Confidence 34456789999999999999999999999999999999999876 458999999988642 124
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-cccccCCCCCCCCCHHHHHHHHH
Q 001228 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTI 1017 (1119)
Q Consensus 939 ~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~i 1017 (1119)
++.+|||+|++.+++.+||.||+.++..... .....+.++.+.++++.+++.+. .++. +.+|||||||||+|
T Consensus 88 r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 88 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHH
T ss_pred hcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhccC-----cccccHHHHHHHHH
Confidence 5679999999999999999999998643222 34456677789999999999764 3444 34799999999999
Q ss_pred HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1018 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1018 A~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
||||+.+|+||||||||+|||+.++..|++.|++++++|.|||+||||++ ++...|||+++|.+ |+|++.|+..
T Consensus 161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~~ 234 (258)
T d1b0ua_ 161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE 234 (258)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999999999999999989999999999985 57778999999975 8999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.9e-44 Score=377.73 Aligned_cols=199 Identities=23% Similarity=0.358 Sum_probs=176.2
Q ss_pred ceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc-cceEEEeccCCCCCCCCCHHHHHH
Q 001228 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1119)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1119)
|||+++. +++++|+|||||||||||++|+|.++|+ +|+|.+||.++....+ ++.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999997 9999999999977654 467999999999999999999999
Q ss_pred HhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCCChHH
Q 001228 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1119)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1119)
|+.+... +. +.+.+++++++.+||++.+|..+.+ |||||
T Consensus 93 ~~l~~~~------------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNVE------------RV------------------------ERDRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTSC------------HH------------------------HHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred hhhcccC------------HH------------------------HHHHHHHHHHHhcCcHhhhhCChhh-----CCHHH
Confidence 9743110 00 0123467899999999999999987 99999
Q ss_pred HHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEEEEcC
Q 001228 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1119)
Q Consensus 348 kkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv~~G~ 427 (1119)
||||+|||||+.+|++|||||||+|||+.++..+.+.++++.+..+.|+|+++|+ ..++.++||+|++|++|+++++|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999988778888777665 468999999999999999999999
Q ss_pred hhHHHH
Q 001228 428 RDNVLE 433 (1119)
Q Consensus 428 ~~~~~~ 433 (1119)
++++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-42 Score=370.84 Aligned_cols=209 Identities=25% Similarity=0.301 Sum_probs=183.6
Q ss_pred ccceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc--ccceEEEeccCCCCCCC
Q 001228 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++||+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||||++.++++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCC
Confidence 3467999999999999999999999999999999999999997 999999999876532 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
+||+||+.|.+.+.+... .+....++.+++.++|.+..+..+++
T Consensus 90 ltv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVST-- 133 (238)
T ss_dssp SBHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGGG--
T ss_pred ccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHhCCCHHHHhhhhhh--
Confidence 999999999776543210 01123456788999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
|||||||||+||+||+++|++|||||||+|||+.++.++.+.++++++. |.|++++.|+ ..++..+||+|++|++
T Consensus 134 ---lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~-l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 134 ---YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHN-MLEVEFLCDRIALIHN 208 (238)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECC-HHHHTTTCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999864 7888887655 5699999999999999
Q ss_pred CeEEEEcChhHHHHH
Q 001228 420 GQIVYQGPRDNVLEF 434 (1119)
Q Consensus 420 G~iv~~G~~~~~~~~ 434 (1119)
|++++.|+++++.+.
T Consensus 209 G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 209 GTIVETGTVEELKER 223 (238)
T ss_dssp TEEEEEEEHHHHHHH
T ss_pred CEEEEEcCHHHHHhc
Confidence 999999999999764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.8e-43 Score=372.45 Aligned_cols=194 Identities=25% Similarity=0.407 Sum_probs=172.2
Q ss_pred cceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh-hhhcceEEEEccCCCCCCCCCHHHHHHH
Q 001228 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1119)
Q Consensus 885 ~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gy~~q~~~~~~~~tv~e~l~~ 963 (1119)
||||++. ||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...+|.+|||||++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 7999995 68999999999999999999999877 469999999998754 2345779999999999999999999998
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001228 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1119)
Q Consensus 964 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~ 1043 (1119)
+. + .....+.++.+.++++.++|.++.++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 63 2 2345666778999999999999988884 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCC
Q 001228 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1119)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~ 1093 (1119)
.+++.|+++.++ |.|||++||+++ ++...||++++|.+ |++++.|+..
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecHH
Confidence 999999999755 999999999985 67788999999975 8999999854
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-42 Score=369.30 Aligned_cols=209 Identities=24% Similarity=0.405 Sum_probs=170.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
.+.+|+|||++|++|+.++|+||||||||||+++|+|.++|+ +|+|.+||+++..... ++.++||+|++.+|+
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccCC-
Confidence 356999999999999999999999999999999999999997 9999999999877653 468999999998885
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
.||+|||.|+.... +.+...+++...+ .... ...++...+|.+|+ .
T Consensus 91 ~Ti~eNi~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--i~~~~~~~~t~i~~-~ 136 (241)
T d2pmka1 91 RSIIDNISLANPGM-------------------------SVEKVIYAAKLAG------AHDF--ISELREGYNTIVGE-Q 136 (241)
T ss_dssp SBHHHHHCTTSTTC-------------------------CHHHHHHHHHHHT------CHHH--HTTSTTGGGSBCST-T
T ss_pred ccccccccccCccc-------------------------cHHHHHHHHHHHh------hHHH--HHhhhcchhhhcCC-C
Confidence 69999998753211 0111111111110 0111 22456778899985 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
...|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++|+|++.|++. ..+.||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS--TVKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGG--GGTTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 466999999999999999999999999999999999999999999999864 789888887763 4578999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+|+++|+++++.+
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.7e-42 Score=371.98 Aligned_cols=205 Identities=22% Similarity=0.338 Sum_probs=175.7
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc----cceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1119)
.+++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... +..++|++|+..+|+
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence 457999999999999999999999999999999999999997 9999999999876543 234999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc-CCcccccccccC
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGD 337 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 337 (1119)
.+||+||+.+.+....... . .....+.+++.+ +|++..|..+++
T Consensus 95 ~ltv~en~~~~~~~~~~~~---------------------~--------------~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKE---------------------G--------------IKRDLEWIFSLFPRLKERLKQLGGT 139 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSS---------------------H--------------HHHHHHHHHHHCHHHHTTTTSBSSS
T ss_pred cccHHHHHHHHHHhcCCHH---------------------H--------------HHHHHHHHHHHhhChHHHHhCchhh
Confidence 9999999988764332110 0 011234455555 688888998887
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEE
Q 001228 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1119)
Q Consensus 338 ~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL 417 (1119)
|||||||||+||+||+.+|++|||||||+|||+.++.++++.++++++. |.|++++.| ...++.++||+|++|
T Consensus 140 -----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH-~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 140 -----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQ-NALGALKVAHYGYVL 212 (240)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEES-CHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC-CHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999775 777777654 557999999999999
Q ss_pred cCCeEEEEcChhHHH
Q 001228 418 SEGQIVYQGPRDNVL 432 (1119)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1119)
++|++++.|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-42 Score=372.49 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=172.9
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1119)
++.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++..... ++.++||+|++.+|+
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG- 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhccccccccC-
Confidence 456999999999999999999999999999999999999997 9999999999876553 467999999999886
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
.||+||+.|+...... .....++.... ..... ..+|++..+|.+++ .
T Consensus 102 ~tv~eni~~g~~~~~~------------------------~~~~~~~~~~~------~~~~~--i~~l~~g~~~~i~~-~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKPT------------------------MEEITAAAVKS------GAHSF--ISGLPQGYDTEVDE-A 148 (251)
T ss_dssp SBHHHHHHCSCSSCCC------------------------HHHHHHHHHHH------TCHHH--HHTSTTGGGCBCCS-S
T ss_pred cchhhhhhhhhcccch------------------------HHHHHHHHHHH------HHHHH--HHhccccchhhHhc-c
Confidence 5999999886321110 00000000000 00111 23567778899874 4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
...|||||||||+|||||+.+|+|++||||||+||+.+..+|.+.|+++.+..++|+|++.|+. +..+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEEC
Confidence 5569999999999999999999999999999999999999999999998776688988887775 35578999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+|+++|+++++.+
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-42 Score=369.05 Aligned_cols=211 Identities=25% Similarity=0.402 Sum_probs=171.7
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
|+|+|++|.|+. +.+.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred eEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEec
Confidence 689999987742 34569999999999999999999999999999999999876 45899999999874
Q ss_pred ---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCC-------ccccccCCCCC
Q 001228 935 ---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------LNDSMVGLPGV 1004 (1119)
Q Consensus 935 ---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~ 1004 (1119)
...+++.++||+|++.+++ .||+||+.++. .....+ .++++++..++.+ -.+..++.. +
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccC-----ccccHH----HHHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 3557788999999998765 69999998742 112222 2334444444322 223344433 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||+|||+++ ....||++++|+ +|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-KG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-TT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999986 4899999999975 457899999997 58
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
+|++.|+..
T Consensus 214 ~Iv~~G~~~ 222 (241)
T d2pmka1 214 KIVEQGKHK 222 (241)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-41 Score=367.83 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=176.1
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc----------------ccce
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRT 246 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~----------------~~~~ 246 (1119)
..++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence 356999999999999999999999999999999999999997 999999999875432 1256
Q ss_pred EEEeccCCCCCCCCCHHHHHHHhhh-hcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHc
Q 001228 247 CAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (1119)
Q Consensus 247 ~~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 325 (1119)
+|||+|++.+++.+||.||+.|+.. ..+.. + . +....+.++++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------H--------------DARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H----------H--------------HHHHHHHHHHHHT
T ss_pred eEEEEechhhccchhcchhhhhhHHHhcCCC----------H----------H--------------HHHHHHHHHHHHc
Confidence 9999999999999999999998642 21110 0 0 1122456789999
Q ss_pred CCccc-ccccccCccCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 326 GLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 326 gL~~~-~dt~vg~~~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
||.+. .+..+++ |||||||||+|||||+.+|++|||||||+|||+.++.+|.+.|+++++. |.|++++ .|..
T Consensus 137 ~l~~~~~~~~p~~-----LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~v-tHdl 209 (258)
T d1b0ua_ 137 GIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVV-THEM 209 (258)
T ss_dssp TCCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEE-CSCH
T ss_pred CCchhhhccCccc-----ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEE-eCCH
Confidence 99764 5777776 9999999999999999999999999999999999999999999999864 7776665 5667
Q ss_pred hhHHhhcCeEEEEcCCeEEEEcChhHHHH
Q 001228 405 PETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1119)
Q Consensus 405 ~~~~~~~D~i~lL~~G~iv~~G~~~~~~~ 433 (1119)
.++..+||||++|++|+|+++|+++++..
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 79999999999999999999999999853
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-42 Score=374.19 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=171.9
Q ss_pred eeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccC
Q 001228 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1119)
Q Consensus 854 ~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1119)
.|+|+||+|.|+.. .+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEec
Confidence 58999999877521 23469999999999999999999999999999999999877 4589999999986
Q ss_pred Ch---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHH-----HHHHHHHHHcCCCCccccccCCCCCC
Q 001228 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELVELKSLNDSMVGLPGVS 1005 (1119)
Q Consensus 934 ~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~ 1005 (1119)
.. ..+++.++||+|++.+++ .||+||+.++... ........ ....+.++. +..-.+..++. .+.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~~~i~~-~~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFISG--LPQGYDTEVDE-AGS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHHT--STTGGGCBCCS-SCS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHHh--ccccchhhHhc-cCc
Confidence 43 456788999999998875 5999999876321 11111111 111222222 22223333332 245
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
+||||||||++|||||+++|+|||||||||+||+.++..|++.|+++.++ |+|||+|||++ +..+.||++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998654 89999999996 45678999999975 8
Q ss_pred EEEEecCCC
Q 001228 1085 RVIYAGPLG 1093 (1119)
Q Consensus 1085 ~v~~~g~~~ 1093 (1119)
+|++.|+..
T Consensus 228 ~iv~~Gt~~ 236 (251)
T d1jj7a_ 228 AIREGGTHQ 236 (251)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.9e-43 Score=374.69 Aligned_cols=212 Identities=27% Similarity=0.421 Sum_probs=172.0
Q ss_pred eEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCC
Q 001228 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1119)
Q Consensus 855 i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1119)
++++||+|.|+ +.+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC--CCCCEEEECCEEec
Confidence 57888888764 22459999999999999999999999999999999999876 45899999999875
Q ss_pred h---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCCCC
Q 001228 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGV 1004 (1119)
Q Consensus 935 ~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~ 1004 (1119)
. ..+++.+|||+|++.+++. |++||+.++.. ..... +.++++++..++... .+..++.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccch----hhHHHHHHHHHhhhhhccCcccccccccCC-C
Confidence 4 4567889999999998876 99999976421 11112 224455555554432 23334433 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCc
Q 001228 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1119)
.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||+|||+++ ....||++++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 4799999999999999999999999999999999999999999999987 5899999999964 5567999999974 8
Q ss_pred EEEEecCCCC
Q 001228 1085 RVIYAGPLGH 1094 (1119)
Q Consensus 1085 ~v~~~g~~~~ 1094 (1119)
+|++.|+..+
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
Confidence 9999998643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.1e-42 Score=370.12 Aligned_cols=220 Identities=25% Similarity=0.363 Sum_probs=182.3
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc----ceEEEeccCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHG 258 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 258 (1119)
..++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++....++ +.++|++|++.+++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCC
Confidence 457999999999999999999999999999999999999997 99999999998766543 35999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCc
Q 001228 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1119)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 338 (1119)
.+||.||+.++....+....... ...... ++. .+....++.+++.+++++..|+.+++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~~~-------~~~~~~-~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLNSL-------FYKKWI-PKE-------------EEMVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHH-------HHCSSC-CCC-------------HHHHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CCeeeeeeeehhhhccccchhhh-------hhhccc-ccH-------------HHHHHHHHHHHHhcCcchhccCchhh-
Confidence 99999999997654432211000 000000 110 01123456789999999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEc
Q 001228 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1119)
Q Consensus 339 ~~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~ 418 (1119)
|||||||||+|||||+.+|++|||||||+|||+.++.+|.+.+++++. .|.|++++ .|..+++.++||+|++|+
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~v-sHdl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLII-EHRLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-CSCCSTTGGGCSEEEEEE
T ss_pred ----CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 47777665 455679999999999999
Q ss_pred CCeEEEEcChhHHHH
Q 001228 419 EGQIVYQGPRDNVLE 433 (1119)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1119)
+|++++.|+++|+.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEecHHHHhh
Confidence 999999999988653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-41 Score=364.31 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=170.8
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-D 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-S
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCCC-C
Confidence 46899999999999999999999999999999999999997 9999999999877643 478999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
||+|||.|+.... ..+...+++...+. ... ...|++..||.+|+ ..
T Consensus 107 Ti~eNi~~g~~~~-------------------------~~~~~~~al~~~~l------~~~--i~~lp~gl~t~i~~-~g 152 (255)
T d2hyda1 107 TVKENILLGRPTA-------------------------TDEEVVEAAKMANA------HDF--IMNLPQGYDTEVGE-RG 152 (255)
T ss_dssp BHHHHHGGGCSSC-------------------------CHHHHHHHHHHTTC------HHH--HHTSTTGGGCBCCG-GG
T ss_pred CHHHHHhccCcCC-------------------------CHHHHHHHHHHhCC------HHH--HHhccccccchhcC-CC
Confidence 9999998853210 01111111111110 111 22567788999986 44
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|+||+||||||+||+.+...|.+.|+++.+ ++|+|++.|++. ....||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~--~~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS--TITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG--GTTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998864 689888877663 55789999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+|+..|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-42 Score=372.56 Aligned_cols=210 Identities=23% Similarity=0.328 Sum_probs=169.6
Q ss_pred cceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCc---ccceEEEeccCCCCCCC
Q 001228 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 259 (1119)
.+++|+|||++|+||++++|+||||||||||+++|+|.++|+ +|+|.+||++++... .++.++||+|++.+|+.
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 90 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc
Confidence 346999999999999999999999999999999999999997 999999999987654 35779999999998876
Q ss_pred CCHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCcc
Q 001228 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1119)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 339 (1119)
||+||+.++...... . .++....+.+.. .-....+++..+|.+|+ .
T Consensus 91 -ti~eNi~~~~~~~~~--~-------------------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~-~ 136 (242)
T d1mv5a_ 91 -TIRENLTYGLEGDYT--D-------------------EDLWQVLDLAFA-----------RSFVENMPDQLNTEVGE-R 136 (242)
T ss_dssp -EHHHHTTSCTTSCSC--H-------------------HHHHHHHHHHTC-----------TTTTTSSTTGGGCEEST-T
T ss_pred -chhhheecccccccc--h-------------------hhHHHHHHHHHh-----------hhhhccCcccccccccC-C
Confidence 999999775331110 0 000000000000 00123456778899986 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 340 ~rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
...|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++|+|++.|++ +....||+|++|++
T Consensus 137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~ 212 (242)
T d1mv5a_ 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIVDADKIYFIEK 212 (242)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHHHCSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCH--HHHHhCCEEEEEEC
Confidence 456999999999999999999999999999999999999999999999864 78988887765 34467999999999
Q ss_pred CeEEEEcChhHHHH
Q 001228 420 GQIVYQGPRDNVLE 433 (1119)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1119)
|+|+++|+++++++
T Consensus 213 G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 213 GQITGSGKHNELVA 226 (242)
T ss_dssp TEECCCSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-41 Score=367.41 Aligned_cols=214 Identities=24% Similarity=0.367 Sum_probs=176.2
Q ss_pred CceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCc
Q 001228 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1119)
Q Consensus 852 ~~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1119)
...|+|+|++|.++. +...+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC--ccccccccCCE
Confidence 346899999987642 23469999999999999999999999999999999999877 45899999998
Q ss_pred cCC---hhhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCcc-------ccccCC
Q 001228 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGL 1001 (1119)
Q Consensus 932 ~~~---~~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~ 1001 (1119)
++. ...+++.++||+|++.+++ .||+||+.|+. .... ++.++++++.+++.+.. +..++.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCC----HHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 764 3567788999999998775 59999998752 1222 23356777777765432 333332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEe
Q 001228 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1119)
Q Consensus 1002 ~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1119)
...+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|||+|||+++ ....||++++|+
T Consensus 151 -~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 -RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp -GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred -CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEEE
Confidence 234799999999999999999999999999999999999999999999986 4899999999975 457899999997
Q ss_pred cCcEEEEecCCC
Q 001228 1082 RGGRVIYAGPLG 1093 (1119)
Q Consensus 1082 ~gG~v~~~g~~~ 1093 (1119)
+|+|++.|+..
T Consensus 227 -~G~iv~~G~~~ 237 (255)
T d2hyda1 227 -NGHIVETGTHR 237 (255)
T ss_dssp -TTEEEEEECHH
T ss_pred -CCEEEEECCHH
Confidence 58999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-41 Score=366.72 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=173.4
Q ss_pred ceeEEeccceeeeccccccccccccccceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCcc
Q 001228 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1119)
Q Consensus 853 ~~i~f~~~~y~v~~~~~~~~~~~~~~~~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1119)
..|+|+||+|.++. ....+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred eEEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcc
Confidence 35899999987642 22459999999999999999999999999999999999876 458999999998
Q ss_pred CCh---hhhcceEEEEccCCCCCCCCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCc-------cccccCCC
Q 001228 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1119)
Q Consensus 933 ~~~---~~~~~~~gy~~q~~~~~~~~tv~e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~ 1002 (1119)
+.. ..+++.++|++|++.++. .|+++|+.++.. ..... +.++++++..++.++ .+..++.
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~- 148 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE- 148 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-
T ss_pred cchhhhhhhhheEEEEeeccccCC-cchhhhhhhcCc----ccCCH----HHHHHHHHHHhHHHHHHhccccchhhhcC-
Confidence 643 456778999999998765 599999987521 11222 234555555554332 2233333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1003 ~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
.+.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +++|||+|||+++ ....||+|++|++
T Consensus 149 ~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHH--HHHhCCEEEEEEC
Confidence 245799999999999999999999999999999999999999999999986 4899999999975 4578999999974
Q ss_pred CcEEEEecCCC
Q 001228 1083 GGRVIYAGPLG 1093 (1119)
Q Consensus 1083 gG~v~~~g~~~ 1093 (1119)
|+|++.|+..
T Consensus 226 -G~Iv~~G~~~ 235 (253)
T d3b60a1 226 -GIIVERGTHS 235 (253)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 8999999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-40 Score=359.24 Aligned_cols=209 Identities=23% Similarity=0.361 Sum_probs=169.1
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcc---cceEEEeccCCCCCCCC
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1119)
.++|+|||+.|++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++..... ++.++||+|++.+++ .
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccCC-c
Confidence 46999999999999999999999999999999999999997 9999999999877653 467999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccC
Q 001228 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1119)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 340 (1119)
|+++|+.|+..... +.+...+++...+ ....++ .|++..||.+|+ ..
T Consensus 104 ti~~n~~~~~~~~~------------------------~~~~i~~a~~~~~------l~~~i~--~l~~gl~t~~~~-~~ 150 (253)
T d3b60a1 104 TVANNIAYARTEEY------------------------SREQIEEAARMAY------AMDFIN--KMDNGLDTIIGE-NG 150 (253)
T ss_dssp BHHHHHHTTTTSCC------------------------CHHHHHHHHHTTT------CHHHHH--HSTTGGGSBCCT-TS
T ss_pred chhhhhhhcCcccC------------------------CHHHHHHHHHHHh------HHHHHH--hccccchhhhcC-CC
Confidence 99999987521110 0011111111111 011222 245667899985 35
Q ss_pred CCCChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCC
Q 001228 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G 420 (1119)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++.+ ++|+|++.|++. ..+.||+|++|++|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999999864 788888877653 45789999999999
Q ss_pred eEEEEcChhHHHH
Q 001228 421 QIVYQGPRDNVLE 433 (1119)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1119)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-39 Score=345.60 Aligned_cols=205 Identities=23% Similarity=0.380 Sum_probs=173.7
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCCh---hhhcceEEEEccCCCCCCCCCHH
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVY 958 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gy~~q~~~~~~~~tv~ 958 (1119)
+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.++.. ...+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 6999999999999999999999999999999999753 47999999987533 33455689999998777778999
Q ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCeEEEe
Q 001228 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1031 (1119)
Q Consensus 959 e~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~-------~p~illLD 1031 (1119)
+++.+... + +...+.++++++.+++.+..++.+ .+||||||||++|||+|++ +|+|||||
T Consensus 91 ~~~~~~~~-----~---~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH-----D---KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS-----C---TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc-----h---hhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 98876431 1 122345788999999998888774 4799999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC--ChHHHHHHhh
Q 001228 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH--ESHKLIEYFE 1104 (1119)
Q Consensus 1032 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~--~~~~l~~~f~ 1104 (1119)
|||+|||+.++..++++|++++++|.|||++||+++ ++...||++++|+ +|++++.|+..+ +...+.+.|.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ev~~~~~l~~~yg 230 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREEVLTPPNLAQAYG 230 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHHHSCHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHHHHhCChHHHHhhC
Confidence 999999999999999999999989999999999986 5888999999997 589999998653 4455776663
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-38 Score=346.42 Aligned_cols=198 Identities=23% Similarity=0.312 Sum_probs=159.0
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
.+||+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++++++. ||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-EHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccCc-eee
Confidence 57999999999999999999999999999999999999997 99999998 48999999998875 999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
||+.|+.... ..++ ....+.+ ........+.+..++.+|+ ....|
T Consensus 115 eni~~~~~~~--~~~~---------------------~~~~~~~-----------~~~~~i~~l~~~~~~~~~~-~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EYRY---------------------KSVVKAC-----------QLQQDITKFAEQDNTVLGE-GGVTL 159 (281)
T ss_dssp HHHTTTSCCC--HHHH---------------------HHHHHHT-----------TCHHHHTTSTTGGGCEECT-TCTTS
T ss_pred cccccccccc--chHH---------------------HHHHHHH-----------HhHHHHHhchhhhhhhhhh-hccCC
Confidence 9998863211 0000 0000000 0112344667777888875 34559
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeEE
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~iv 423 (1119)
||||||||+|||||+.+|+||+|||||+|||+.+..++++.+..... .++|+|++.|+. +..+.||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH--HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999876433222 367888877764 566889999999999999
Q ss_pred EEcChhHHHH
Q 001228 424 YQGPRDNVLE 433 (1119)
Q Consensus 424 ~~G~~~~~~~ 433 (1119)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-38 Score=345.26 Aligned_cols=188 Identities=22% Similarity=0.354 Sum_probs=150.8
Q ss_pred ceeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHH
Q 001228 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1119)
Q Consensus 880 ~~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e 959 (1119)
.++|+||||+|++||++||+||||||||||+++|+|... +.+|.|.++| +++|++|++.+++. ||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG----------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS----------CEEEECSSCCCCSE-EHHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC----------EEEEEeccccccCc-eeec
Confidence 469999999999999999999999999999999999877 4589999988 38999999988775 9999
Q ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHcC-------CCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001228 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1119)
Q Consensus 960 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1032 (1119)
|+.|+.. .... ..+++++.++ +.+..+..++.. ..+|||||||||+|||||+++|+||||||
T Consensus 116 ni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred ccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 9987532 1111 1233333333 333333334332 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecCCCC
Q 001228 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1119)
Q Consensus 1033 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~~~~ 1094 (1119)
|||+||+.+...|++.+......|+|+|++||++ +....||++++|++ |++++.|+..+
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999998876444444689999999996 45678999999975 89999998653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-37 Score=329.24 Aligned_cols=197 Identities=25% Similarity=0.363 Sum_probs=168.3
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCccc---ceEEEeccCCCCCCCCCH
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTV 262 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV 262 (1119)
+|+|||+.|++||+++|+|||||||||||++|+|.. ++ +|+|.++|+++.....+ ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCccccH
Confidence 699999999999999999999999999999999975 44 89999999988665432 358999999877667899
Q ss_pred HHHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCC
Q 001228 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1119)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rG 342 (1119)
.+++.+...-+ .....++++++.++|++..++.+++
T Consensus 90 ~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~----- 125 (231)
T d1l7vc_ 90 WHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTNQ----- 125 (231)
T ss_dssp HHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGGG-----
T ss_pred HHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChhh-----
Confidence 99987642210 0112356788899999999988877
Q ss_pred CChHHHHHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEE
Q 001228 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~-------~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~ 415 (1119)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.+++++. .|.|+|++.|+ ..++.++||+|+
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBCC
T ss_pred cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHHCCEEE
Confidence 99999999999999996 6799999999999999999999999999976 47787777654 568999999999
Q ss_pred EEcCCeEEEEcChhHHH
Q 001228 416 LLSEGQIVYQGPRDNVL 432 (1119)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1119)
+|++|+++++|+++++.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-36 Score=317.72 Aligned_cols=182 Identities=20% Similarity=0.293 Sum_probs=150.7
Q ss_pred eeeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccCCCCCCCCCHHHH
Q 001228 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1119)
Q Consensus 881 ~vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~~~~~~~~tv~e~ 960 (1119)
++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. .+..++|+||+..++..+|+.|+
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhH--hcCcEEEEeecccCCCCcCHHHH
Confidence 59999999999999999999999999999999999876 468999999998753 45679999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001228 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1119)
Q Consensus 961 l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~ 1040 (1119)
+.+...++... ... ..+.+.++.+++.++... +.+||||||||++|||||+.+|+|+||||||+|||+.
T Consensus 91 l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~------~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 91 LKAVASLYGVK-VNK----NEIMDALESVEVLDLKKK------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp HHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTSB------GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHHHhcCCc-cCH----HHHHHHHHHcCCcccccc------cCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHH
Confidence 98877665332 222 235678888887665433 3479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCeEEEEecCccHHHHHhhceEeEEec
Q 001228 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1119)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1119)
++..+++.|+++.++ |.+||+++|+. ..||.+.+|.+
T Consensus 160 ~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 160 SKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999998755 44444444543 36898887754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.7e-35 Score=309.47 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=152.6
Q ss_pred ceeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCCCCHH
Q 001228 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1119)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1119)
++||+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++... +..++|++|+..++..+|+.
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHH
Confidence 36999999999999999999999999999999999999997 99999999998653 46799999999999999999
Q ss_pred HHHHHhhhhcCCCchhHHhHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhHHHHHHHHcCCcccccccccCccCCCC
Q 001228 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1119)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rGL 343 (1119)
|++.+.+...+.... ...+...++.+++.+. +..+++ |
T Consensus 89 ~~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~-~~~~~~-----L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDL-KKKLGE-----L 126 (200)
T ss_dssp HHHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCT-TSBGGG-----S
T ss_pred HHHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCccc-ccccCc-----C
Confidence 999887665432110 0112335666666543 355666 9
Q ss_pred ChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcC
Q 001228 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1119)
Q Consensus 344 SGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~ 419 (1119)
||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++.+.. +++|++.||.. ++||.+.+|++
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCC-CEEEEEEechh----hhcchhhheee
Confidence 9999999999999999999999999999999999999999999988764 45666666543 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.34 E-value=2.4e-14 Score=145.12 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEEEcCCeE
Q 001228 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1119)
Q Consensus 343 LSGGqkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~lL~~G~i 422 (1119)
+|+|+++|.++++++..+|+++++|||.... .....+...+.+.....+.+++++.|+. +...++|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 7899999999999999999999999985443 3345566666665554567777776654 45678899999999999
Q ss_pred EEEc
Q 001228 423 VYQG 426 (1119)
Q Consensus 423 v~~G 426 (1119)
+.-+
T Consensus 158 ~~v~ 161 (178)
T d1ye8a1 158 IELT 161 (178)
T ss_dssp EECC
T ss_pred EEEC
Confidence 7654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=1.8e-13 Score=138.55 Aligned_cols=155 Identities=16% Similarity=0.054 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCCCCCeeEEEEEECCccCChhhhcceEEEEccC--CC--CCCCCCHHHHHHHHHHhhcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQN--DI--HSPYVTVYESLLYSAWLRLS 970 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gy~~q~--~~--~~~~~tv~e~l~~~~~l~~~ 970 (1119)
.++|+||||||||||+++|+|... +..|.+.+.+.+...... +.++.... .. .....+..+ ..+..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK--RTGFRIITTEGKKKIFSSKFFTS------KKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCC------SSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH--hhhhhhhhhhHHHHHHhhhhhhh------hhhhh
Confidence 489999999999999999999665 346788877654322111 12221110 00 000000000 00000
Q ss_pred C-CccHHHHHHHHHHHHHHcCCCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001228 971 S-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1119)
Q Consensus 971 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l 1049 (1119)
. .... + ...+|+|++++.++++++..+|++|++|||....+ ....+.+.+
T Consensus 72 ~~~~~~--------------------~-------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l 122 (178)
T d1ye8a1 72 SYGVNV--------------------Q-------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLV 122 (178)
T ss_dssp TEEECH--------------------H-------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHH
T ss_pred hhhcCc--------------------c-------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHH
Confidence 0 0000 0 11379999999999999999999999999854433 234455555
Q ss_pred HHHHh-CCCeEEEEecCccHHHHHhhceEeEEecCcEEEEecC
Q 001228 1050 RNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1119)
Q Consensus 1050 ~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~v~~~g~ 1091 (1119)
.+..+ .+.+||+++|+.+ ....+|++..+. +|+++.-++
T Consensus 123 ~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~ 162 (178)
T d1ye8a1 123 RQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTP 162 (178)
T ss_dssp HHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCT
T ss_pred HHHhccCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECC
Confidence 55543 4899999999864 456788888875 578876654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=3.1e-08 Score=108.42 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCCCHHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeE
Q 001228 1004 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1119)
Q Consensus 1004 ~~~LS~Gqrqrl~iA~aL----~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1119)
...+|.|||+.+.++..+ ..+|+++++|||-++|+|.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 346999999998877664 445789999999999999999999999999864 678999999985 5678898865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=1.4e-07 Score=103.12 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE-
Q 001228 342 GISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL- 416 (1119)
Q Consensus 342 GLSGGqkkRvsia~al----~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l- 416 (1119)
.+|+|||+...++..+ ..++.++++|||-++|++.....+.+.|++.+. +.-+|+++|.| ++.+.+|+++.
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~~v 294 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLHGV 294 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEEEE
Confidence 4899999998877543 457799999999999999999999999998864 44566766654 78899999977
Q ss_pred -EcCC
Q 001228 417 -LSEG 420 (1119)
Q Consensus 417 -L~~G 420 (1119)
+.+|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.8e-07 Score=106.56 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCccHHHHHhhceEeEE
Q 001228 1005 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1119)
Q Consensus 1005 ~~LS~Gqrqrl~iA~aL----~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1119)
..||||||.++++|..+ ..++++++||||+++||+.....+.+.|+++...+.-+|+|||+| .+...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 35899999998877554 456789999999999999999999999998865566799999997 578889998755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=4.3e-06 Score=94.86 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHHHHH----hcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhHHhhcCeEEE
Q 001228 341 RGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1119)
Q Consensus 341 rGLSGGqkkRvsia~al----~~~p~illlDEPtsgLDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i~l 416 (1119)
.-+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. .+.-+|+++|+| ++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 34799999998887443 467889999999999999999999999988753 233466666654 69999999886
Q ss_pred E
Q 001228 417 L 417 (1119)
Q Consensus 417 L 417 (1119)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.65 E-value=0.00015 Score=74.44 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCeEEEEecCc
Q 001228 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1014 rl~iA~aL~~~p~illLDEPtsgLD~~~~~~i-~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
++.-....+.+..++|+||+..|=|+.....+ ..++..+.+.+..++++||..
T Consensus 104 ~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 104 EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred HHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 33333334566789999999999999765544 445555666689999999985
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.37 E-value=0.00029 Score=72.28 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEecC
Q 001228 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 349 kRvsia~al~~~p~illlDEPtsgLDs~~~~~i~-~~l~~~~~~~~~t~ii~~~q~ 403 (1119)
+|++-.....++..++++||+.+|=|+.....+. ..+..+.+ .+.++++++|++
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~ 157 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech
Confidence 3333333334566899999999999998777665 34455544 356777777764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00043 Score=71.56 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEecC
Q 001228 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQP 403 (1119)
Q Consensus 347 qkkRvsia~al~~~p~illlDEPtsgLDs~~~~~i~~-~l~~~~~~~~~t~ii~~~q~ 403 (1119)
|-+|++-...-..+..++++||+.+|=++.....+.. .++.+....+..++++.|.+
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 3333333333345567999999999999988888764 46666554445566665543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00086 Score=69.21 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=35.5
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCeEEEEecCcc
Q 001228 1021 LVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPS 1067 (1119)
Q Consensus 1021 L~~~p~illLDEPtsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~H~~~ 1067 (1119)
-+.+..++++||+..|=|+.....+. .++..+... +..+|++||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 35566799999999999998776665 456667554 568899999754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.95 E-value=0.0022 Score=67.57 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=28.5
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
-|+++..-+.+|+++.|.|++|+|||||+.-|+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 466666668999999999999999999988776
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.94 E-value=0.0042 Score=65.35 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-|+++.+=+.||+++.|.|+||+|||||+.-|+-.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 45555545799999999999999999998888743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.84 E-value=0.006 Score=62.51 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=41.3
Q ss_pred cCCcEeEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEEEecC---------chhHHhhcCeEEEEc
Q 001228 359 GTANVLYMDEISTG---LDSSTTFQICKFLKQMVHILDVTMIVALLQP---------APETYDLFDDIILLS 418 (1119)
Q Consensus 359 ~~p~illlDEPtsg---LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~~~~~~D~i~lL~ 418 (1119)
.+|++++.|..+.- .+.......+..|.++++..+.+++++.|.+ ...+..++|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 47899998876543 4565556666677777777788877776643 223556789998884
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.68 E-value=0.00042 Score=70.64 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~ 232 (1119)
+|+.++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 36789999999999999999999875432 56654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00043 Score=67.02 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.51 E-value=0.00063 Score=66.21 Aligned_cols=27 Identities=44% Similarity=0.636 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|++++|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=8.7e-05 Score=74.18 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=29.1
Q ss_pred eeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 56777888776 99999999999999999997544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=7.9e-05 Score=74.52 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=27.0
Q ss_pred eccceeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 883 L~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+++.++.+.+| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 55677788777 89999999999999999985
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.37 E-value=0.00064 Score=67.23 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|+++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.35 E-value=0.042 Score=55.23 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred cCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEecCch--------hHHhhcCeEEEEc
Q 001228 359 GTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAP--------ETYDLFDDIILLS 418 (1119)
Q Consensus 359 ~~p~illlDEPtsgL----Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~--------~~~~~~D~i~lL~ 418 (1119)
.+|+++++|-.+.-. +......+...+...++..+.|+++..|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 478999999776543 33334444555555556678888888776542 3445678887774
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.015 Score=60.69 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=33.0
Q ss_pred HhcCCcEeEEeCCCCC-----CCHHHHHHHHHHHHHHHHhCCcEEEEEEecCc
Q 001228 357 LVGTANVLYMDEISTG-----LDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (1119)
Q Consensus 357 l~~~p~illlDEPtsg-----LDs~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 404 (1119)
...+++++++|--++- -|......+++.|+.++...+.++++. ||+.
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v-~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehh-hhcc
Confidence 3568999999966431 255666788889998888777666655 5543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.30 E-value=0.00068 Score=65.82 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~ 236 (1119)
++++|+|++|||||||++.|..++......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 478999999999999999999887653222344544443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.00075 Score=65.42 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.+.++.|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0012 Score=67.32 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+|+.++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 58899999999999999999999854
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.17 E-value=0.00046 Score=70.57 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEE
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~ 232 (1119)
+|..++++|+||+|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999975432 56664
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0045 Score=64.89 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred HHhcCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q 001228 1020 ELVANPSIIFMDEPTS-----GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1065 (1119)
Q Consensus 1020 aL~~~p~illLDEPts-----gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 1065 (1119)
.-..+|+++++|--++ --|......+++.++.++. .|++||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995542 1255666677778887764 48999999884
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.02 E-value=0.0013 Score=64.92 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
|.++.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999999753
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0014 Score=63.30 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|++|||||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0006 Score=66.60 Aligned_cols=26 Identities=46% Similarity=0.718 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999998854
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.91 E-value=0.0018 Score=62.90 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.86 E-value=0.0014 Score=64.00 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.++|.||+|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.80 E-value=0.0021 Score=60.78 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.76 E-value=0.0018 Score=62.31 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++|.|||||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.70 E-value=0.0025 Score=61.66 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|-.++|.|||||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999999775
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.67 E-value=0.0022 Score=63.71 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|||||||+++|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999863
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.64 E-value=0.0026 Score=61.62 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.|+++.|.|++||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.58 E-value=0.0013 Score=67.26 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+|..+.++|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 47788999999999999999999853
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.52 E-value=0.0021 Score=62.21 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC-CCCeeEEEEEECC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIKISG 930 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~-~~g~~~G~i~i~g 930 (1119)
+++|+|++|||||||+..|.... ..|..-|-|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 68999999999999999887632 2233345555444
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.51 E-value=0.0027 Score=61.40 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++.|.|||||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999875
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0034 Score=62.64 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999998887653
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0032 Score=63.45 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999976644
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.48 E-value=0.0028 Score=61.01 Aligned_cols=22 Identities=59% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0033 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.+.++.|+|++||||||+.+.|+...
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.27 E-value=0.0037 Score=64.00 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997544
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.23 E-value=0.0037 Score=61.19 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|+|||||+++|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999863
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.004 Score=62.67 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.|.++.|+||||+|||||++.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999998864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.20 E-value=0.0044 Score=60.30 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999877643
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.19 E-value=0.0041 Score=60.16 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|-++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999953
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.0031 Score=62.04 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.10 E-value=0.0051 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+++|+|||||||||+-+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.0051 Score=59.58 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.06 E-value=0.004 Score=61.89 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.+.++.|+|||||||||+-+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.05 E-value=0.0053 Score=60.58 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|-.++|+|||||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.98 E-value=0.0048 Score=61.19 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999854
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.96 E-value=0.0055 Score=59.05 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++|-.+.|+|++||||||+.+.|+-.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999854
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.92 E-value=0.0051 Score=64.05 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
..++|.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 45889999999999999999998753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.89 E-value=0.0056 Score=57.99 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367789999999999999998763
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.0053 Score=61.27 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998863
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.82 E-value=0.0049 Score=59.83 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|+.|+|||||.+.|+..
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999963
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.0041 Score=61.29 Aligned_cols=27 Identities=41% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0074 Score=57.49 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|+|++|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.74 E-value=0.0071 Score=58.94 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
+-+++.++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999998853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.73 E-value=0.0066 Score=59.47 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0073 Score=59.89 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+++|+|||||||||+-+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998865
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.68 E-value=0.0066 Score=57.21 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++.|+|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998863
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.0076 Score=58.48 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.++|+|.+|+|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.61 E-value=0.0067 Score=57.36 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.60 E-value=0.12 Score=51.57 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=26.1
Q ss_pred eccc-eeeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 883 LHSV-SGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 883 L~~v-s~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
|+++ .+-+++|+++.|.|++|+|||||..-++
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 5554 3579999999999999999999975443
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.58 E-value=0.007 Score=59.06 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHhHcCCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
++|+|++|||||||++.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.57 E-value=0.0055 Score=59.88 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999886
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.57 E-value=0.0073 Score=58.87 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.56 E-value=0.044 Score=56.70 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-+.|.||.|+|||+|.++|+.
T Consensus 47 ~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHH
Confidence 367999999999999999995
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.55 E-value=0.0071 Score=57.19 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999863
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.54 E-value=0.0085 Score=58.38 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999873
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0085 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999986543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.54 E-value=0.011 Score=65.57 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.|+-+++|.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 46679999999999999999999887754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.53 E-value=0.0056 Score=60.08 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+||+|+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.52 E-value=0.0053 Score=66.19 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~~~ 224 (1119)
++.|.-++|.||.||||||||++|.+.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4555668999999999999999999998774
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.51 E-value=0.0062 Score=59.11 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|+|++|||||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.50 E-value=0.0073 Score=59.38 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++||.|++|||||||.+.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0085 Score=59.17 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++|+|||||||||.-+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.47 E-value=0.0075 Score=59.43 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.46 E-value=0.0083 Score=58.96 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.46 E-value=0.0084 Score=57.63 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.0092 Score=60.77 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999887643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0082 Score=59.17 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0096 Score=56.66 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999853
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.29 E-value=0.018 Score=58.51 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.5
Q ss_pred eec-eEEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 187 LKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 187 L~~-vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
|++ +.|=+++|+++.|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 444 24559999999999999999999988887544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.01 Score=57.58 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|.+|+|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.0083 Score=57.99 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.26 E-value=0.0096 Score=57.17 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|+|||||||+-+.||-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999876
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.21 E-value=0.0092 Score=56.77 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998763
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.16 E-value=0.0094 Score=57.72 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999984
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.13 E-value=0.01 Score=56.74 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++.|+|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999999643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.11 E-value=0.011 Score=57.72 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999775
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.10 E-value=0.011 Score=57.69 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.011 Score=57.06 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.0066 Score=59.09 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.05 E-value=0.009 Score=58.26 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999988753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.05 E-value=0.012 Score=56.41 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.011 Score=58.45 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|+||||||||||.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.0098 Score=58.57 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|+||||||||||++.|+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999975
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.01 E-value=0.011 Score=57.68 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.95 E-value=0.031 Score=57.62 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+.|.||.|+|||+|.++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 679999999999999999963
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.93 E-value=0.0096 Score=60.77 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.92 E-value=0.0086 Score=58.40 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+||+|..|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999984
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.92 E-value=0.013 Score=58.31 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++++|.||||||||.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999997653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.012 Score=57.38 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.012 Score=57.51 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
..+.|+||||+|||||++.|..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.86 E-value=0.0098 Score=57.23 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.|+|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.0075 Score=59.27 Aligned_cols=24 Identities=46% Similarity=0.547 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.|-++.|+|++||||||+-+.|+-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999985
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.011 Score=57.40 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.013 Score=57.02 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.84 E-value=0.016 Score=59.34 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~La 218 (1119)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999977554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.84 E-value=0.012 Score=56.43 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|+|++||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.013 Score=57.22 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.81 E-value=0.013 Score=57.87 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.81 E-value=0.013 Score=57.10 Aligned_cols=22 Identities=68% Similarity=0.998 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.80 E-value=0.013 Score=56.54 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.|+|++||||||+-+.||-.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999997763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.012 Score=55.55 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+.|+|++||||||+-+.|+-..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37789999999999999998543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.011 Score=63.53 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999986553
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.75 E-value=0.013 Score=56.62 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+++|.|+.||||||+.+.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.73 E-value=0.013 Score=58.58 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.69 E-value=0.014 Score=60.81 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-++|+|.+|+|||||+|+|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.012 Score=55.52 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.62 E-value=0.014 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|||||||++.|.|.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999885
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.53 E-value=0.014 Score=57.71 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|+||||||||||++.|+-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.42 E-value=0.0053 Score=58.50 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.016 Score=58.11 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++||.|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.014 Score=58.54 Aligned_cols=24 Identities=46% Similarity=0.607 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|.|||||||||+-+.|+-++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999998874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.015 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.14 E-value=0.016 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.|+|+.|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.13 E-value=0.046 Score=51.96 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999984
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.023 Score=58.08 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
|=+++|+++.|.||||||||||...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.022 Score=56.30 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=25.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-+++|+++.|.|++|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999887764
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.02 E-value=0.017 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.98 E-value=0.022 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|-|||||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 468889999999999999998874
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.95 E-value=0.053 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+..-+-|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 33347799999999999999999743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.95 E-value=0.02 Score=59.40 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999953
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.024 Score=56.72 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 258 (1119)
+++|-||+|||||||-+.|+-.+... + + . .....+..+++++.+.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~-~-------~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E-V-------D--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G-S-------C--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh----c-c-------c--cCCCceEEEeccccccc
Confidence 68999999999999999998765421 0 0 0 01234677888877643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.022 Score=58.55 Aligned_cols=24 Identities=50% Similarity=0.821 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.++|.||||+||||+.++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999998764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.019 Score=58.61 Aligned_cols=23 Identities=61% Similarity=0.982 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++.||||+|||||.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.65 E-value=0.025 Score=60.65 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.62 E-value=0.024 Score=54.11 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988664
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.55 E-value=0.023 Score=60.72 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.-++++||||+|||.|.++||..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3456899999999999999998764
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.54 E-value=0.024 Score=54.22 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+.|+|++||||||+-+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999854
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.032 Score=59.19 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCCCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1119)
+++|-|++|||||||-+.|...+... . ....+..+++|+.+.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~---~--------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW---P--------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS---T--------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh---c--------------CCCceEEEeeeeeECCc
Confidence 78999999999999999998776421 0 01247788888888763
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.48 E-value=0.025 Score=54.50 Aligned_cols=21 Identities=57% Similarity=0.716 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.47 E-value=0.028 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.++.|+||.||||||+.+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999984
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.46 E-value=0.027 Score=57.08 Aligned_cols=22 Identities=64% Similarity=0.937 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|.||||+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.38 E-value=0.028 Score=57.09 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.36 E-value=0.026 Score=54.88 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+||+|+..||||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.31 E-value=0.028 Score=57.16 Aligned_cols=24 Identities=54% Similarity=0.823 Sum_probs=21.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 679999999999999999988754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.29 E-value=0.033 Score=55.57 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+.+++++||+|+||||.+-=||-++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999888887653
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.026 Score=58.51 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+..-+++.||||+|||+|.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 334578999999999999999998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.27 E-value=0.024 Score=60.78 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.0
Q ss_pred ceeeeeCCcEEEEEcCCCCCHHHHHHhHcCCCC
Q 001228 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1119)
Q Consensus 886 vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g~~~ 918 (1119)
+...++.|.-+.|.|+.||||||||++|++...
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344556677789999999999999999998554
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.17 E-value=0.0092 Score=56.74 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.++|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.14 E-value=0.026 Score=58.13 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
=++|.||||+|||+|.++||..+.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 468999999999999999998753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.12 E-value=0.03 Score=61.99 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.05 E-value=0.039 Score=55.26 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=29.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCcc
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~ 237 (1119)
+.|.++.+.|.||||||||-+.|+-++.... -.-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 3577899999999999999999986553210 01245666654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.05 E-value=0.031 Score=54.14 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.03 E-value=0.027 Score=58.66 Aligned_cols=27 Identities=48% Similarity=0.775 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+..-++|.||||+|||+|.++|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 444578999999999999999999863
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.00 E-value=0.032 Score=53.56 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.037 Score=55.43 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.033 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.91 E-value=0.038 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++-+++.++|++||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.88 E-value=0.038 Score=55.17 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998776764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.87 E-value=0.036 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.++.++|.||+|+|||||++.++-...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999999876543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.83 E-value=0.033 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
-+++|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987763
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.83 E-value=0.036 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
=.++|+|..|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999854
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=91.75 E-value=0.039 Score=54.00 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677889999999999999999993
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.034 Score=53.09 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.036 Score=52.81 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998774
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.66 E-value=0.035 Score=53.39 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|+|++||||||+-+.|+-
T Consensus 5 Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999984
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.64 E-value=0.037 Score=54.75 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.++|.+|+|||||.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999995
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.62 E-value=0.034 Score=57.26 Aligned_cols=23 Identities=57% Similarity=0.921 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++.||||+|||+|.++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.62 E-value=0.04 Score=54.00 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001228 199 MTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1119)
+++|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.038 Score=53.33 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987664
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.54 E-value=0.041 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-.++.|+||.||||||+.+.|+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.52 E-value=0.035 Score=54.60 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 890 FRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 890 i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.+.++.|+||.||||||+.+.|+-
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35677899999999999999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.45 E-value=0.043 Score=54.86 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++|-++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999999999974
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.37 E-value=0.034 Score=54.39 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.29 E-value=0.043 Score=53.75 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.039 Score=57.16 Aligned_cols=23 Identities=52% Similarity=0.881 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|.||||+|||+|.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 68999999999999999998753
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.049 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.|.+++|-|+.||||||+.+.|+-.+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.19 E-value=0.042 Score=52.49 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+.|+|+.||||||+-+.|+..
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.17 E-value=0.11 Score=50.23 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=27.1
Q ss_pred eeeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 001228 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG 219 (1119)
..|+.....+ .|.=+++.||||+|||||...|.-
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3466555555 788999999999999999988864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.16 E-value=0.047 Score=54.67 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-.+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999998776764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.036 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
+.+++|=|+-||||||+++.|+..+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 678999999999999999999988753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.14 E-value=0.058 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 197 G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
..+++++||+|+||||.+--||-++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999998987653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.049 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.045 Score=52.66 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.09 E-value=0.052 Score=55.73 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
..++|.||+|+||||+++.|+..+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999988754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.02 E-value=0.049 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.99 E-value=0.056 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++|+|...+|||||+++|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 69999999999999999998653
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.97 E-value=0.063 Score=50.92 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=25.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 194 i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+||.+++|-|+=|||||||.+.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 35899999999999999999999987653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.93 E-value=0.046 Score=52.09 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.93 E-value=0.038 Score=54.86 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.90 E-value=0.043 Score=60.68 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+||+|.+|+|||||+|+|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.063 Score=55.63 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.6
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
|=+++|++|.|.||||||||||+-.++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 678999999999999999999988777654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.058 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.054 Score=54.15 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 891 RPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 891 ~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.057 Score=51.66 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.07 Score=50.98 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.70 E-value=0.053 Score=54.79 Aligned_cols=22 Identities=55% Similarity=0.976 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|-||+|+|||||.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999875
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.70 E-value=0.27 Score=50.77 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=25.8
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-++.|.++-|-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 6789999999999999999999988875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.05 Score=52.18 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.051 Score=52.13 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.68 E-value=0.053 Score=54.30 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+-.+++++||+|+||||.+-=||-++
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588999999999999988888665
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.05 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.054 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999765
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.054 Score=53.04 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.60 E-value=0.058 Score=51.74 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++++|+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998743
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.54 E-value=0.062 Score=60.03 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~ 253 (1119)
=++++||+|||||-|.+.||+.+.- --+..++..++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceee------ecceeecc
Confidence 3579999999999999999998752 13455544433 37999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.51 E-value=0.048 Score=51.90 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.++|+|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.059 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+++++||+|+||||.+-=|+-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999998877774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.47 E-value=0.065 Score=50.82 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=24.5
Q ss_pred eeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 889 VFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 889 ~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
..+||.++.|-|+=|||||||.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 347999999999999999999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.40 E-value=0.041 Score=53.35 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.40 E-value=0.058 Score=52.40 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.054 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
..-.+||.|+.|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 455799999999999999999974
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.058 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.058 Score=52.07 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.36 E-value=0.036 Score=58.05 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.31 E-value=0.033 Score=60.01 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
=++|.||||+|||||.+.|++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 3689999999999999999998875
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.28 E-value=0.064 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
...+++++||+|+||||.+-=||-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999888886653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.28 E-value=0.061 Score=51.87 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|+||.||||||+.+.|+-
T Consensus 3 I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.27 E-value=0.052 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
++++|..|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 88999999999999998875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.19 E-value=0.067 Score=53.29 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
..++.++||+|+||||.+-=|+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999887874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.18 E-value=0.073 Score=53.64 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.9
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-+++|+++-|.|+.|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999999877653
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.18 E-value=0.049 Score=56.13 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
..+.|.||+|+|||||.++|++..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999754
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.07 E-value=0.063 Score=53.66 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|.||.||||||+-+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.062 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.00 E-value=0.061 Score=52.82 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.97 E-value=0.067 Score=50.76 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998874
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.067 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+++++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999988887654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.064 Score=51.50 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.88 E-value=0.051 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999997543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.065 Score=56.77 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++||.|++||||||+.+.|..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHH
Confidence 799999999999999888864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.84 E-value=0.058 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|.+|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999886
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.07 Score=53.59 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.+-||+|+||||+.++|+..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 57899999999999999987653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.79 E-value=0.13 Score=49.70 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
.|+. +...-.|.=+++.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3443 344557888999999999999999887654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.75 E-value=0.089 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.71 E-value=0.054 Score=55.96 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
++.|.||||+||||++++++-.+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998763
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.65 E-value=0.092 Score=52.55 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5889999999999999999999987754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.07 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 893 Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+.+++|-|+-||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.60 E-value=0.062 Score=51.53 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999999875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.58 E-value=0.075 Score=51.47 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999994
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.55 E-value=0.074 Score=53.42 Aligned_cols=22 Identities=50% Similarity=0.943 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.+-||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5789999999999999999865
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.15 Score=49.24 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.50 E-value=0.13 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.48 E-value=0.052 Score=52.22 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=8.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.46 E-value=0.063 Score=54.29 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 499999999999999999986
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.44 E-value=0.07 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHhHcC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-.++++|+.|+|||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999976
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.42 E-value=0.073 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=15.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.-.+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999998777774
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.31 E-value=0.082 Score=50.18 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.068 Score=51.41 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998865
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.26 E-value=0.083 Score=53.24 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.4
Q ss_pred eeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 887 s~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+-+++|+++-|.|++|+|||||..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999999999877763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.082 Score=50.34 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.083 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.088 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.07 E-value=0.086 Score=50.10 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.08 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.06 E-value=0.086 Score=50.20 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999999875
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.04 E-value=0.067 Score=58.13 Aligned_cols=28 Identities=43% Similarity=0.488 Sum_probs=25.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 195 ~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999999874
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.88 E-value=0.095 Score=51.98 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001228 199 MTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1119)
+++|.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.88 E-value=0.09 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++||.|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.87 E-value=0.062 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.087 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.79 E-value=0.088 Score=56.06 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+||+|.|-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999985
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.78 E-value=0.092 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.76 E-value=0.078 Score=53.98 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+.|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.75 E-value=0.16 Score=48.59 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=26.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-|+. ++..-.|.=+++.|+||+|||||...|.-+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4555 555667889999999999999998777544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.098 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++|+|..|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.71 E-value=0.097 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+|.+++|-|+-||||||+.+.|+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999985
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.63 E-value=0.094 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999987654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.094 Score=52.10 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|.||.||||||+-+.|+-
T Consensus 5 iI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999995
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.54 E-value=0.098 Score=50.50 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||+-+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.52 E-value=0.11 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
-++|+|...+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.45 E-value=0.18 Score=48.67 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=26.6
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+|.....+ .|.-+.|.|++|+|||||...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456555566 777899999999999999988774
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.098 Score=49.93 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.43 E-value=0.1 Score=52.09 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
+|.+++|-|+-||||||+.+.|+-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999998543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.41 E-value=0.098 Score=50.65 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.11 Score=51.57 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001228 199 MTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1119)
+++|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.1 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998743
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.27 E-value=0.1 Score=49.51 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.1 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.03 E-value=0.12 Score=52.24 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.7
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+-+++|+++-|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999976554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.01 E-value=0.11 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001228 199 MTLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG 219 (1119)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.93 E-value=0.13 Score=51.99 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=25.1
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.90 E-value=0.096 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999976
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.11 Score=49.60 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.++|..|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.11 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999885
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.11 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.83 E-value=0.096 Score=50.70 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.81 E-value=0.13 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
+++|-|+-||||||+++.|+..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.73 E-value=0.12 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.73 E-value=0.11 Score=55.43 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
..-.+||.|+-|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 345799999999999999999985
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.13 Score=49.35 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
++.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.67 E-value=0.11 Score=52.34 Aligned_cols=20 Identities=40% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-|.||+|+|||||.++|+.
T Consensus 48 lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999985
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.66 E-value=0.11 Score=51.42 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.59 E-value=0.13 Score=54.38 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|.-+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.56 E-value=0.073 Score=55.60 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCcceEEEECCccCCCCcccceEEEeccCCCCC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~ 257 (1119)
+++|-|+|||||||+.+.|...+.. .| -.++.++||+.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh----cC---------------CCeEEEeCCCCCc
Confidence 7899999999999999999776542 11 1357788887663
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.52 E-value=0.13 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.11 Score=49.45 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.36 E-value=0.13 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=0.11 Score=49.20 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.32 E-value=0.13 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.7
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHc
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~ 914 (1119)
+-|++|.++.|.|++|+|||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999987776
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.32 E-value=0.12 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
.+.|+|+.|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.31 E-value=0.13 Score=51.10 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++||.|..||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.14 Score=48.89 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.++|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.18 E-value=0.2 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977664
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.17 E-value=0.19 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
-++|+|-|-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.14 E-value=0.13 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366899999999999999984
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.09 E-value=0.13 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+.|+||.||||||+-+.|+-
T Consensus 8 rIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999994
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.99 E-value=0.15 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
+++|-|++|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886544
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.96 E-value=0.14 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.94 E-value=0.12 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-+.++||+|+|||+|.++|+..
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999964
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.89 E-value=3.7 Score=41.84 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
...+++|.|.-|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998863
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.12 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999875
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.85 E-value=0.14 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.83 E-value=0.12 Score=54.87 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=23.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
..+.| .+++.||||+|||.|-++|++.+.
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred ccCCc-eEEEECCCCccHHHHHHHHHHHhc
Confidence 44444 667789999999999999999863
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.24 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.++++|..|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.14 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 488999999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.69 E-value=0.15 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.+..+.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 456899999999999999998874
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.15 Score=48.41 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.51 E-value=0.12 Score=53.53 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|=++.|++|-|-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 6789999999999999999999988877643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.23 E-value=0.11 Score=49.62 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.16 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=0.16 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999987653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.18 Score=53.44 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 001228 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 196 ~G~~~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
|...++++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999998763
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=86.09 E-value=0.16 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.7
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999985
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.06 E-value=0.16 Score=49.35 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 001228 200 TLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~La 218 (1119)
++|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999983
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.00 E-value=0.16 Score=49.53 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998774
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.17 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.17 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=0.17 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhHcC
Q 001228 896 TALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g 915 (1119)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998874
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.16 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|+|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.82 E-value=0.19 Score=52.04 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 001228 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 192 ~~i~~G~~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
+=++.|+++.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 56789999999999999999997666543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.81 E-value=0.17 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 001228 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.73 E-value=0.17 Score=49.66 Aligned_cols=21 Identities=57% Similarity=0.896 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.72 E-value=0.16 Score=51.04 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 001228 199 MTLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.63 E-value=0.17 Score=52.65 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++||-|+.|||||||-+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 79999999999999998775
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.53 E-value=0.21 Score=51.91 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
-+++|+|+-++|||||||.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.52 E-value=0.17 Score=49.42 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+||+|.-.||||||++.|.|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 799999999999999999984
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.51 E-value=0.16 Score=48.38 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.49 E-value=0.18 Score=55.46 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1016 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1016 ~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
++..+|=.+|+||++.|.. |.+++.... +.+.+|.-|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3566778899999999986 566665443 45668999999999654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.47 E-value=0.17 Score=50.85 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+.|.||+|+|||||.++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=85.27 E-value=0.17 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+-+.||.|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999963
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.22 E-value=0.19 Score=47.68 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999884
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.20 E-value=0.2 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999984
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.19 E-value=0.33 Score=48.43 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHhHc
Q 001228 895 LTALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~ 914 (1119)
++.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999885
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.04 E-value=0.28 Score=47.13 Aligned_cols=33 Identities=27% Similarity=0.211 Sum_probs=24.5
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
.||..-.. -.|.=+.|+|+||+|||||...|..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34444443 3566799999999999999888764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.04 E-value=0.19 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001228 199 MTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1119)
-++|||.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.99 E-value=0.2 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999885
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.91 E-value=0.2 Score=48.22 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001228 200 TLLLGPPGAGKTTLMLALAG 219 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG 219 (1119)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.86 E-value=0.21 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.2 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999998774
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.62 E-value=0.18 Score=48.02 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 477999999999999998875
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.48 E-value=0.23 Score=51.64 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=25.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 001228 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 193 ~i~~G~~~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.|-.|+-.+|+|++|+|||||+..|+-..
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.43 E-value=0.22 Score=47.25 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997754
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.20 E-value=0.29 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHH---hcCcCC
Q 001228 199 MTLLLGPPGAGKTTLMLAL---AGKLGK 223 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~L---aG~~~~ 223 (1119)
-++|+|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 4699999999999999999 455443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.24 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.81 E-value=0.24 Score=47.65 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
++.|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999987764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=83.66 E-value=0.35 Score=46.13 Aligned_cols=33 Identities=36% Similarity=0.275 Sum_probs=24.3
Q ss_pred eeccceeeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 882 vL~~vs~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
-+|... -.-.|.=+.|.|++|+|||||.-.|..
T Consensus 5 ~~H~~~-v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHGVL-VDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEESEE-EEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEE-EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344433 334677899999999999999877663
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.14 E-value=0.29 Score=50.51 Aligned_cols=20 Identities=50% Similarity=0.635 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001228 199 MTLLLGPPGAGKTTLMLALA 218 (1119)
Q Consensus 199 ~~~llGp~GsGKSTLL~~La 218 (1119)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 46899999999999999994
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.01 E-value=0.24 Score=49.85 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHhHcCC
Q 001228 896 TALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
+-+.||.|+|||||.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 558999999999999999964
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.61 E-value=0.29 Score=48.73 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=34.1
Q ss_pred hcCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEEecCchhH
Q 001228 358 VGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1119)
Q Consensus 358 ~~~p~illlDEPtsgL-Ds~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 407 (1119)
+...+++++|+.=.=. +......+...+..... .++.+|++...|..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhc
Confidence 4578999999984432 46666667777776544 5778888877776544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.39 E-value=0.29 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcC
Q 001228 895 LTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+++|+|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988775
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=82.26 E-value=0.34 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=25.5
Q ss_pred eeeeCCcEEEEEcCCCCCHHHHHHhHcC
Q 001228 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1119)
Q Consensus 888 ~~i~~Ge~~~l~G~nGaGKTTLl~~L~g 915 (1119)
+-+++|.++-|.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6789999999999999999999877764
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.05 E-value=0.3 Score=51.69 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 001228 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066 (1119)
Q Consensus 1006 ~LS~Gqrqrl~iA~aL~~~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1066 (1119)
.++..+.+++....-+...|-++..=.- |......+.+..+...+.+..|+.++...
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk~----d~~~~e~~~~~~~~~~~~~~~vi~~sa~~ 253 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANKA----DAASDEQIKRLVREEEKRGYIVIPTSAAA 253 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEECG----GGSCHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhcccc----cchhhHHHHHHHHHHhhcCCEEEEecHHH
Confidence 4788888888888888888877764321 22224445555555556677777777653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.99 E-value=0.31 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++++|.-.||||||+|+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999953
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.92 E-value=0.29 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhHcCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
-+.|.||.|+|||+|.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3679999999999999999963
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.86 E-value=0.33 Score=49.28 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999863
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.80 E-value=0.32 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHhHcCCC
Q 001228 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1119)
Q Consensus 895 ~~~l~G~nGaGKTTLl~~L~g~~ 917 (1119)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.34 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~~ 222 (1119)
.+|+||||.|||++...|+-++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999998763
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.32 E-value=0.25 Score=51.39 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=13.0
Q ss_pred EEEEcCCCCCHHHHH
Q 001228 200 TLLLGPPGAGKTTLM 214 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL 214 (1119)
++|.|++||||||.|
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 579999999999764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.19 E-value=0.32 Score=48.47 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+.+++++||.- ++...++..+...+.+.. ....+++++++.+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSN 142 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchh
Confidence 36799999975 455555656655555432 3456677777654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.80 E-value=0.32 Score=49.09 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCcc
Q 001228 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1119)
Q Consensus 1024 ~p~illLDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1119)
+.+++++||.-. |...+...+.+.+.+.. ....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999964 88888877777776542 2456788888764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.75 E-value=0.33 Score=50.06 Aligned_cols=19 Identities=53% Similarity=0.793 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHhHc
Q 001228 896 TALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~ 914 (1119)
+||+|..|+|||||+..|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999994
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.70 E-value=0.37 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHhHcCC
Q 001228 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 892 ~Ge~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
|...+.++||+|+|||.|.+.|+..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhh
Confidence 4446789999999999999999953
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=0.4 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 001228 200 TLLLGPPGAGKTTLMLALAGKL 221 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~~ 221 (1119)
.+|+||||.|||++...|+-++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 4799999999999999999876
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.54 E-value=0.4 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++++|...+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.44 E-value=0.37 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 001228 200 TLLLGPPGAGKTTLMLALAGK 220 (1119)
Q Consensus 200 ~~llGp~GsGKSTLL~~LaG~ 220 (1119)
++|||..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998544
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.37 E-value=0.3 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHhHcCC
Q 001228 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1119)
Q Consensus 894 e~~~l~G~nGaGKTTLl~~L~g~ 916 (1119)
=.+||+|...+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35999999999999999999863
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.30 E-value=0.34 Score=50.12 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHhHc
Q 001228 896 TALMGVSGAGKTTLMDVLA 914 (1119)
Q Consensus 896 ~~l~G~nGaGKTTLl~~L~ 914 (1119)
+||+|..|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999995
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.30 E-value=0.42 Score=47.90 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 001228 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1119)
Q Consensus 198 ~~~~llGp~GsGKSTLL~~LaG~~~~ 223 (1119)
.+++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999977654
|