Citrus Sinensis ID: 001240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------
MHPNPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVRSARSLGLLPSTSDRPEVPARAAAAAVVARALAGLPPHQRYSLSSSSEELSSIYGSRPQVQVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENKTPNTKQKESDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKSGSSSMPESATTSSLVDPVQSNLANVESYDQVEAIRDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSSARVIHSNKSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKVTPKSSDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLTSFSSSSPSSVANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
ccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccc
cccccccccccccccEEEcccccccccccccccccEEEHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccEEEHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHccHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccc
mhpnpfpfgtifgnpfllngdlteeggagyqspnvlFLVPFLlfqgggmdlSKVGEKLLSSVRSarslgllpstsdrpevpARAAAAAVVARALaglpphqryslsssseelssiygsrpqvqVVEDLeedfyeedfdpvshilehippeendlEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLceripeskFRQCLLKTLAVLFKLICSYHEIMnfqlenktpntkqkesdismssgeihqinsdpgnscntvgvngstsgsvdkksgsssmpesattsslvdpvqsnlanvesydqveairddgsaasssgspwyylrkdATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKetwmklpadtVQVVSFAglvgdgaplivssdsssarvihsnksanptgatsrnsgfshwlksgnpfsQKLIYIskglnspqlngaidgeyddyfrgdkvtpkssdkshmngtnsvpeeenEDLLADfidedsqlpsriskpnlwrnhsshwnddeitsqtgsslCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFcqqngkgstnplNYRLKTALNKITQDCdewikpqltsfsssspssvanmdvtptsprslsgasfglkercaAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHyktrlahggihKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGlqhfvpvnvkpkLQIVETFIKayylpeteyvhwaaahpeytksQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
MHPNPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVRSARslgllpstsdrpevPARAAAAAVVARALAGLPPHQRYSLSSSSEELSSIYGSRPQVQVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICmngrrhitssinevsrDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNfqlenktpnTKQKESDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKSGSSSMPEsattsslvdpvqsnLANVESYDQVEAIrddgsaasssgspwyyLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSSARVIHSnksanptgatsrNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKvtpkssdkshmngtnsvpeeeNEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLtsfsssspssvANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
MHPNPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNvlflvpfllfQGGGMDLSKVGEKLLSSVRSARSLGLLPSTSDRPEVParaaaaavvaralaGLPPHQRYslsssseelssIYGSRPQVQVVedleedfyeedfdPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVlseylqlldsysqlsAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENKTPNTKQKESDISMSSGEIHQINSDPGNSCNTVGVNgstsgsvdkksgsssmpesattssLVDPVQSNLANVESYDQVEAIRddgsaasssgsPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSSARVIHSNKSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKVTPKSSDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLTsfsssspssVANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
*****FPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVG*********************************VVA********************************VVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQL***********************************************************************************************PWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIV*****************************HWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYF******************************************************************GSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKP*******************************GLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEIL********
*****FP*GTIFGNPFLLNGDLTE*****YQSPNVLFLVPFL****************L**********************************************************************EDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDH*********TYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLEN********************QINSDPGNSCNTVGV**************************************************************LRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLV****************************************KSGNPF*********************************************************************************************TGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGK*S**PLNYRLKTALNK***********************************SLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAM*****KT*LEIL*KIE****
MHPNPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVRSARSLGLLPSTS***********AAVVARALAGLPPH******************RPQVQVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENK*************SSGEIHQINSDPGNSCNTVGVNG*************************DPVQSNLANVESYDQVEAIRDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVS************************SGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKV******************EENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLTS********************SLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
***NPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVRSARSL**LPSTSDRPEVPARAAAAA*****LAG**PHQ***LSSSSEELSSIYGSRPQVQVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLEN*******************************************************************N****ESYDQVEA************SPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGD*******************************SGFSHWLKSGNPFSQKLI********************************************************I*ED***********************EITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEW*****************NMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESA**
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MHPNPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVRSARSLGLLPSTSDRPEVPARAAAAAVVARALAGLPPHQRYSLSSSSEELSSIYGSRPQVQVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENKTPNTKQKESDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKSGSSSMPESATTSSLVDPVQSNLANVESYDQVEAIRDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSSARVIHSNKSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKVTPKSSDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLTSFSSSSPSSVANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESAGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1116 2.2.26 [Sep-21-2011]
Q8CI71964 Coiled-coil domain-contai yes no 0.516 0.597 0.261 6e-48
Q5ZKV9949 Coiled-coil domain-contai yes no 0.494 0.581 0.263 1e-47
Q96JG6964 Coiled-coil domain-contai yes no 0.5 0.578 0.263 2e-47
>sp|Q8CI71|CC132_MOUSE Coiled-coil domain-containing protein 132 OS=Mus musculus GN=Ccdc132 PE=1 SV=2 Back     alignment and function desciption
 Score =  193 bits (491), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 168/643 (26%), Positives = 292/643 (45%), Gaps = 67/643 (10%)

Query: 501  DDGSAASSSGSPWYYLRKDATTF----VSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTS 556
            ++ +AA++ GS    +  +  TF    V + L  G   +WQ    +V   +    +    
Sbjct: 351  NEETAAAAEGSN--VMSTEEATFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFK 408

Query: 557  IHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKET 616
               F+   + ++  +  GE FCG ++   +E ++    NYF   HR  +  L+M LE ET
Sbjct: 409  YDDFIFVLDIVSRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNHHRIRLDELRMFLENET 468

Query: 617  WMKLPADT----VQVVSFAGLVGDGAPLIVSSDSSSARVIHSNKSANPTGATSRNSGFSH 672
            W   P  +    +Q+  F  L    +P +  S   SA       S+ P       + F  
Sbjct: 469  WELCPVKSNFSILQLHEFKFLEQSRSPSVSPSKQPSA------TSSKPV------TLFEQ 516

Query: 673  WLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKVTPKSSDKSHMNGTNS---V 729
            +   GNPF  +  +              D E +D    +       +KS     +S   V
Sbjct: 517  YCSGGNPFEIQADHK-------------DEETEDVLASNGYESDEQEKSAYQDYDSDSDV 563

Query: 730  PEEENEDLLADFIDEDS-QLPSR-ISKPNLWRNHSSHWNDDEITSQ--TGSSLCLLRSMD 785
            PEE    L  D++DE +  +P + +S+  L     S ++ +++ +   T ++L ++R + 
Sbjct: 564  PEE----LKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVG 619

Query: 786  KYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNP--LNYRLKTALNKI 843
            KY ++M  L  +  +    + QLF+ + + ++  F + +   ST     + RLKT LN+I
Sbjct: 620  KYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLKTTLNRI 679

Query: 844  TQ---DCDEWIKPQLTSFSSSS-----PSSVANMDVTPTSPRSLSGASFGLKERCAAADT 895
             +   D +    P  T  ++       PS   N  V  TS  +L    +GL ER  A ++
Sbjct: 680  QESLIDLEGSADPTATLTAAEERKEKVPSPHLNQLVILTSGDTL----YGLAERVVATES 735

Query: 896  VSLVARMLHRSRTRLQSML--LQNTAIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYV 953
            +  +A      +  L +++  ++   ++ FY   V +  +L + I+   A   +  +  +
Sbjct: 736  LVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKAIDYEQML 795

Query: 954  DRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGG----IHKEVQDLLLEYGVEIV 1009
              + N KW+VKE+  +HN YVD LL EF+ +  RL        I   V ++L E+ + + 
Sbjct: 796  LLMMNVKWDVKEIMSQHNIYVDALLKEFEQFNKRLNEVSKRVRIPLPVSNILWEHCIRLA 855

Query: 1010 AETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPET 1069
              T++EG + VK+C++EGRALM LD Q  +  L+    +   P  + VET+IKAYYL E 
Sbjct: 856  NRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTEN 915

Query: 1070 EYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIE 1112
            +   W   H EY+  Q+  LVN V       +K R ++L  I+
Sbjct: 916  DMERWIKEHREYSTKQLTNLVN-VCLGSHINKKARQKLLAAID 957

Mus musculus (taxid: 10090)
>sp|Q5ZKV9|CC132_CHICK Coiled-coil domain-containing protein 132 OS=Gallus gallus GN=CCDC132 PE=2 SV=1 Back     alignment and function description
>sp|Q96JG6|CC132_HUMAN Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1116
2555655131110 conserved hypothetical protein [Ricinus 0.978 0.983 0.741 0.0
2240542441106 predicted protein [Populus trichocarpa] 0.959 0.968 0.721 0.0
3565426921128 PREDICTED: coiled-coil domain-containing 0.983 0.973 0.709 0.0
3565393211124 PREDICTED: coiled-coil domain-containing 0.987 0.980 0.711 0.0
4494436101123 PREDICTED: LOW QUALITY PROTEIN: coiled-c 0.963 0.957 0.689 0.0
2977348821060 unnamed protein product [Vitis vinifera] 0.927 0.976 0.711 0.0
2978261571122 hypothetical protein ARALYDRAFT_481716 [ 0.983 0.978 0.676 0.0
306836811124 uncharacterized protein [Arabidopsis tha 0.983 0.976 0.673 0.0
2224229251124 AT2G27900 [Arabidopsis thaliana] 0.983 0.976 0.673 0.0
224106878998 predicted protein [Populus trichocarpa] 0.873 0.976 0.711 0.0
>gi|255565513|ref|XP_002523747.1| conserved hypothetical protein [Ricinus communis] gi|223537051|gb|EEF38687.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1610 bits (4170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/1122 (74%), Positives = 952/1122 (84%), Gaps = 30/1122 (2%)

Query: 4    NPFPFGTIFGNPFLLNGDLTEEGGAGYQSPNVLFLVPFLLFQGGGMDLSKVGEKLLSSVR 63
            N FP GT+FGNPFLLNG+L+     G++S  V FLVPFLLFQGG MDLSKVGEK+L+SVR
Sbjct: 6    NLFPSGTLFGNPFLLNGELS----GGFESSRVFFLVPFLLFQGGDMDLSKVGEKILNSVR 61

Query: 64   SARSLGLLPSTSDRPEVPARAAAAAVVARALAGLPPHQRYSLSSSSEELSSIYGSRPQVQ 123
            SA+S+GLLPS SDRPEVPARAAAAA VAR +AGLPPHQ++SL SSSEEL SIYGS PQ +
Sbjct: 62   SAKSIGLLPSASDRPEVPARAAAAAAVARVIAGLPPHQQFSLPSSSEELRSIYGSTPQGR 121

Query: 124  VVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHH 183
            V E+LEE +YEEDFDP+ HILEHIP EEN+LEYFEKQAALRLAQLDRV+E LS QVMEHH
Sbjct: 122  VAEELEEGYYEEDFDPIRHILEHIPSEENELEYFEKQAALRLAQLDRVAERLSHQVMEHH 181

Query: 184  EVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPI 243
            EVMVKGMNLVRELEKDLK+ANVICMNGRRH+TSS NEVSRDLIVN++SKKKQALLDMLPI
Sbjct: 182  EVMVKGMNLVRELEKDLKIANVICMNGRRHLTSSRNEVSRDLIVNSHSKKKQALLDMLPI 241

Query: 244  LTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRT 303
            L++L HA +MQ ALESLVE+GNYCKAFQVLSEYLQLLDS+S LSAIQEMSRGVEVWLG T
Sbjct: 242  LSDLHHAWEMQTALESLVEDGNYCKAFQVLSEYLQLLDSFSDLSAIQEMSRGVEVWLGST 301

Query: 304  LQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIV 363
            LQKLDSLLLGVCQEFKEE YI VVDAYALIGD+SGLAEKIQSFFMQEV+SETHSVLK+IV
Sbjct: 302  LQKLDSLLLGVCQEFKEENYITVVDAYALIGDISGLAEKIQSFFMQEVLSETHSVLKNIV 361

Query: 364  LEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENKTPNT 423
             ED E QM NSRLTYSDLC +IPESKFRQCLL+TLAVLF+L+CSYHEIM F +ENK    
Sbjct: 362  QEDQETQMQNSRLTYSDLCLQIPESKFRQCLLRTLAVLFRLMCSYHEIMIFHIENKVSFY 421

Query: 424  KQKESDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKSGSSSMP--ESATTSSLVD 481
                    M    + +I+SDP  +      NGS S S+ K      MP  E+ T+ S  D
Sbjct: 422  SSNALFCCMLFDPVTRISSDPERN------NGSLSQSMGK------MPTQEAITSMSSTD 469

Query: 482  PVQSNLANV-ESYDQVEAIRDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTT 540
             + +  +N  +S+ QV+  R+DG+ ASSSGSPWY LRKDAT FV+QTL+RG KNLWQLTT
Sbjct: 470  HMGATDSNYSDSHYQVDEDRNDGTGASSSGSPWYQLRKDATVFVAQTLQRGRKNLWQLTT 529

Query: 541  SRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAF 600
            SRV+VL+ S+A+ S SIHQFL+NYEDLNVFILAGEAFCG+EAVEFR+KLK V ENYF AF
Sbjct: 530  SRVSVLLSSSAIGSMSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKAVSENYFAAF 589

Query: 601  HRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSS--ARVIHSNKSA 658
            HRQN+YALKMVLEKE W+KLP DTVQV+SFAGLVGDGAPLIV SD +S   R+ HS+KS 
Sbjct: 590  HRQNVYALKMVLEKENWLKLPPDTVQVISFAGLVGDGAPLIVPSDGNSKNVRLHHSDKSL 649

Query: 659  NPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFR-GDKVTPKS 717
            N   AT + +GF+ WL++GNPFS K+++ SK  +S   NG   G+YD     G+ V+P+S
Sbjct: 650  NSVDATLKKNGFTSWLQNGNPFSLKVVHTSKEGHSSPHNGGPSGDYDGQMNDGNLVSPQS 709

Query: 718  SDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSS 777
            +D SHMNGT  V E+ENEDLLADFIDEDSQLPSRISKPN  R +S+HW +DEIT+QTGSS
Sbjct: 710  TDVSHMNGT-PVSEDENEDLLADFIDEDSQLPSRISKPNHSRINSAHWKNDEITAQTGSS 768

Query: 778  LCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQ--NGKGSTNPLNYR 835
            +CLLRSMDKYARLMQKL+IVNVEFFKGICQLFE+FF++VFETF QQ  N KG ++ +NYR
Sbjct: 769  VCLLRSMDKYARLMQKLEIVNVEFFKGICQLFEIFFYFVFETFGQQNPNSKGLSDSVNYR 828

Query: 836  LKTALNKITQDCDEWIKPQLTSF--SSSSPSSVANMDVTPTSPRS-LSGASFGLKERCAA 892
            LKTAL++I+QDCD+WIK   TSF  S +S ++  + D+TPTSP++ LS  SFGLKERC A
Sbjct: 829  LKTALSRISQDCDQWIKSHSTSFLPSPASLTTYMHADLTPTSPQNHLSATSFGLKERCTA 888

Query: 893  ADTVSLVARMLHRSRTRLQSMLLQN--TAIEDFYVNLVDSVPDLIEHIHKTTARLLLHID 950
            AD +SLVA+++HRS+  LQSMLLQN  T +EDFY +LV+SVPDL EHIH+TTARLLLHI+
Sbjct: 889  ADNISLVAQIMHRSKAHLQSMLLQNNPTIVEDFYAHLVNSVPDLKEHIHRTTARLLLHIN 948

Query: 951  GYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVA 1010
            GYVDRI+NAKWEV+ELGLEHNGYVDLLLGEFKHYKTRLAHGGI KEVQDLLLEYG+EIV 
Sbjct: 949  GYVDRIANAKWEVRELGLEHNGYVDLLLGEFKHYKTRLAHGGIQKEVQDLLLEYGIEIVV 1008

Query: 1011 ETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETE 1070
            ETL EGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETE
Sbjct: 1009 ETLTEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETE 1068

Query: 1071 YVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIE 1112
            YVHWA AHPEYTK+QI+GL+NLVA MKGWKRKTRLE+LEKIE
Sbjct: 1069 YVHWARAHPEYTKNQIVGLINLVATMKGWKRKTRLEVLEKIE 1110

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224054244|ref|XP_002298163.1| predicted protein [Populus trichocarpa] gi|222845421|gb|EEE82968.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542692|ref|XP_003539800.1| PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max] Back     alignment and taxonomy information
>gi|356539321|ref|XP_003538147.1| PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max] Back     alignment and taxonomy information
>gi|449443610|ref|XP_004139570.1| PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 132-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297734882|emb|CBI17116.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297826157|ref|XP_002880961.1| hypothetical protein ARALYDRAFT_481716 [Arabidopsis lyrata subsp. lyrata] gi|297326800|gb|EFH57220.1| hypothetical protein ARALYDRAFT_481716 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30683681|ref|NP_180357.2| uncharacterized protein [Arabidopsis thaliana] gi|79323290|ref|NP_001031433.1| uncharacterized protein [Arabidopsis thaliana] gi|19699017|gb|AAL91244.1| unknown protein [Arabidopsis thaliana] gi|33589670|gb|AAQ22601.1| At2g27890 [Arabidopsis thaliana] gi|330252962|gb|AEC08056.1| uncharacterized protein [Arabidopsis thaliana] gi|330252963|gb|AEC08057.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222422925|dbj|BAH19449.1| AT2G27900 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224106878|ref|XP_002314315.1| predicted protein [Populus trichocarpa] gi|222850723|gb|EEE88270.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1116
TAIR|locus:20578201124 AT2G27900 "AT2G27900" [Arabido 0.983 0.976 0.615 0.0
MGI|MGI:1920538964 Ccdc132 "coiled-coil domain co 0.507 0.587 0.253 2.6e-63
WB|WBGene00008078954 vesa-1 [Caenorhabditis elegans 0.298 0.349 0.252 1.6e-28
TAIR|locus:2057820 AT2G27900 "AT2G27900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3402 (1202.6 bits), Expect = 0., P = 0.
 Identities = 701/1138 (61%), Positives = 828/1138 (72%)

Query:     1 MHPNPF-PFGTIFGNPFLLNG--DLTEEG-GAGYQSPNXXXXXXXXXXQGGG-MDLSKVG 55
             M PN F PFG++ GNPFL NG  DL E G GA ++S            QG G MDLSKVG
Sbjct:     1 MQPNLFFPFGSVLGNPFLFNGGGDLNELGSGAAFESSRVFFLLPFLLSQGTGVMDLSKVG 60

Query:    56 EKLLSSVRSARSLGLLPSTS--DRPEVPXXXXXXXXXXXXXXGLPPHQRYXXXXXXXXXX 113
             EK LSSV+SA SLGLLPS S  DRPE+P              GLP  QR           
Sbjct:    61 EKFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARALAGLPSDQRLSISSTATELN 120

Query:   114 XIYGSRPQVQVVXXXXXXXXXXXXXPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSE 173
              IYG+RP  Q V             PV HILE++P +E++L YFEKQA LRL QLD+V+E
Sbjct:   121 SIYGNRPLPQQVEELEEGFYEEDFDPVRHILENVPDDESELAYFEKQATLRLVQLDKVAE 180

Query:   174 LLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKK 233
              LS  VMEHHEVMVKGMNLVRELEKDLK+ANVIC NGRR++TSS+NE SRDLIV+T+SKK
Sbjct:   181 TLSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKK 240

Query:   234 KQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVXXXXXXXXXXXXXXXAIQEMS 293
             KQALLDMLPILT+L HA  MQ  LE LVE+GNYCKAFQV               A QEM+
Sbjct:   241 KQALLDMLPILTDLRHARVMQSNLEDLVEDGNYCKAFQVLSEYLQLLDSLSEFSAAQEMT 300

Query:   294 RGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVIS 353
             RGVEVWLGRTL KLDSLLLGVCQEFKE++Y+ V+DAYALIGDVSGLAEKIQSFFMQEVIS
Sbjct:   301 RGVEVWLGRTLHKLDSLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKIQSFFMQEVIS 360

Query:   354 ETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMN 413
             ETHSVLKSIV ED+      SRLTYSDLC + PESKFRQCLL+TLAVLF+LI SYHEIM+
Sbjct:   361 ETHSVLKSIVGEDNSAATQYSRLTYSDLCLQTPESKFRQCLLRTLAVLFQLIYSYHEIMS 420

Query:   414 FQLENKTPNTKQKESDISMSSGEIHQINSDPGNSCNTVGVNXXXXXXXXXXXXXXXXXXX 473
             F     TP  K+ E  +S S      ++S  G+SC+                        
Sbjct:   421 F-----TPE-KEAEILVSPSLATTQMVDSVTGSSCDPQDGGLLPGSIPPCTISAEESDGS 474

Query:   474 XXXXXLVDPVQSNLANVESYDQVEAIRXXXXXXXXXXXPWYYLRKDATTFVSQTLRRGCK 533
                  +   + SN+A  ES +  + +            PWYYLRK++  FVS+TL+RG +
Sbjct:   475 GTSSSV--QLASNIAIDESRNSEDRV-------SSSESPWYYLRKESAAFVSETLQRGRR 525

Query:   534 NLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVC 593
             NLWQLTTSRV+VL+ S    STSIHQFL+NYEDL++FILAGEAFCG E V+FREKLK VC
Sbjct:   526 NLWQLTTSRVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVC 585

Query:   594 ENYFVAFHRQNIYALKMVLEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSS--ARV 651
             ENYF AFHRQ+++ALKMVLEKETW KL  DTVQ ++FAGLVGDGAPLI+SS S+S  +R 
Sbjct:   586 ENYFTAFHRQSMHALKMVLEKETWTKLSPDTVQAINFAGLVGDGAPLIISSRSASGSSRF 645

Query:   652 IHSNKSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGD 711
              HS+K +N    +   SGFS+WLKSGNPFS KL +  +  +   +NG  D E +D    D
Sbjct:   646 PHSDKPSNSIDPSGNRSGFSYWLKSGNPFSAKLTHYREDQDYSSINGE-DHEGNDSIHDD 704

Query:   712 KVTPKSSDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWN-DDEI 770
              V PK  D   +NG + V E+ENEDLLADFIDEDSQLP R    +  R  SSH++ +D++
Sbjct:   705 VVNPKIRDIKRINGGSPVSEDENEDLLADFIDEDSQLPRRSFTRSQSRTSSSHFSTNDDL 764

Query:   771 TSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQN----GK 826
             T+QTGSSLCLLRSMDKYARLMQKL+IVN EFFKGICQLF VFF++VF+ F Q+N    GK
Sbjct:   765 TAQTGSSLCLLRSMDKYARLMQKLEIVNAEFFKGICQLFGVFFYFVFQVFGQENTNSGGK 824

Query:   827 GSTNPLNYRLKTALNKITQDCDEWIKPQLTXXXXXXXX---XVANM-DVTPTSPRS---- 878
             G ++  N+RLK+ L++I+Q+C++WIKP ++            V ++ DVTP SP +    
Sbjct:   825 GVSDSFNHRLKSCLSRISQECEQWIKPHVSSSPSSSLAFPNTVHSLADVTPASPLNTSGH 884

Query:   879 LSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNTA--IEDFYVNLVDSVPDLIE 936
             LSG SF LKERCAA DTVSLVAR+LH+S+  LQSML+      +EDF+  LV SVPDL E
Sbjct:   885 LSGVSFSLKERCAAVDTVSLVARVLHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPDLTE 944

Query:   937 HIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKE 996
             H+H+TTAR+LLH++GYVDRI+N+KWE+KELG+EHNGYVDL+LGEFKHYKTRLAHGGI +E
Sbjct:   945 HLHRTTARILLHVNGYVDRIANSKWEIKELGMEHNGYVDLMLGEFKHYKTRLAHGGIPQE 1004

Query:   997 VQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQI 1056
             VQ+LLLEYGVEI AE L+EGLSR+KRCTDEGR LMSLDLQVLINGLQHFVP  VKPKLQI
Sbjct:  1005 VQNLLLEYGVEIFAEMLVEGLSRIKRCTDEGRVLMSLDLQVLINGLQHFVPTKVKPKLQI 1064

Query:  1057 VETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIESA 1114
             VETFIKAYYLPETEYVHWA AHPEYTK+Q++GLVNLVA MKGWKRKTRLE++EKIESA
Sbjct:  1065 VETFIKAYYLPETEYVHWARAHPEYTKAQVVGLVNLVATMKGWKRKTRLEVIEKIESA 1122
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006486 "protein glycosylation" evidence=RCA
MGI|MGI:1920538 Ccdc132 "coiled-coil domain containing 132" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00008078 vesa-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I0486
hypothetical protein (1106 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1116
pfam10475291 pfam10475, DUF2450, Protein of unknown function N- 1e-121
pfam10474234 pfam10474, DUF2451, Protein of unknown function C- 6e-89
>gnl|CDD|220772 pfam10475, DUF2450, Protein of unknown function N-terminal domain (DUF2450) Back     alignment and domain information 
 Score =  373 bits (960), Expect = e-121
 Identities = 128/291 (43%), Positives = 185/291 (63%), Gaps = 1/291 (0%)

Query: 125 VEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHE 184
           ++ +E  +++EDFDPV + L+ +P +  + E  EK+      Q D VS+ LS+ +MEH E
Sbjct: 1   LDSIEAGYFDEDFDPVLYELKKLPDDGLNYEDIEKERFRLKRQHDVVSKKLSQLIMEHRE 60

Query: 185 VMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSR-DLIVNTNSKKKQALLDMLPI 243
             VKGM  +RE+EKDLK ANVIC NGRRH+ SS   ++R  L +    KK+Q L+D+LP 
Sbjct: 61  AFVKGMQRIREIEKDLKEANVICKNGRRHLDSSKKNLTRTALGLLAKYKKRQLLIDLLPT 120

Query: 244 LTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRT 303
           LT +    D ++ L  L+EEGNY  A Q+L E  Q+ + YSQ + +QE+S  ++  L  T
Sbjct: 121 LTTIKSIRDTEVRLRELLEEGNYPGAIQLLLECQQIAEGYSQYNCVQELSSKLQETLLLT 180

Query: 304 LQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIV 363
             KLDS+LL VC +F  E Y  V +AY L+G V   A+K+QS F+Q + + T +VLKS V
Sbjct: 181 ETKLDSVLLEVCVDFDSEKYAKVQEAYKLLGKVLRAADKLQSNFIQAIETTTFAVLKSHV 240

Query: 364 LEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNF 414
                 +   SRLTY DLC ++PE +F  CLL+TL VL+ L+ SY++I+ +
Sbjct: 241 ELAQSEEDRKSRLTYKDLCLQLPEDQFVPCLLETLEVLWDLMLSYYQILQW 291

This protein is found in eukaryotes but its function is not known. The C-terminal part of some members is DUF2451. Length = 291
>gnl|CDD|151040 pfam10474, DUF2451, Protein of unknown function C-terminus (DUF2451) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1116
PF10474234 DUF2451: Protein of unknown function C-terminus (D 100.0
KOG2939502 consensus Uncharacterized conserved protein [Funct 100.0
PF10475291 DUF2450: Protein of unknown function N-terminal do 100.0
KOG2115951 consensus Vacuolar sorting protein VPS45 [Intracel 100.0
KOG2346636 consensus Uncharacterized conserved protein [Funct 99.83
PF15469182 Sec5: Exocyst complex component Sec5 98.95
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 98.93
KOG2307705 consensus Low density lipoprotein receptor [Intrac 98.86
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 98.38
KOG3691982 consensus Exocyst complex subunit Sec8 [Intracellu 98.35
PF07928135 Vps54: Vps54-like protein; InterPro: IPR012501 Thi 98.3
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 98.14
KOG2180793 consensus Late Golgi protein sorting complex, subu 98.14
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 98.13
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 98.09
KOG2939 502 consensus Uncharacterized conserved protein [Funct 97.67
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 97.56
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 97.56
KOG0412773 consensus Golgi transport complex COD1 protein [In 96.61
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 96.48
KOG2069581 consensus Golgi transport complex subunit [Intrace 96.12
KOG2347934 consensus Sec5 subunit of exocyst complex [Intrace 94.76
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 94.71
KOG4182828 consensus Uncharacterized conserved protein [Funct 94.62
KOG2176800 consensus Exocyst complex, subunit SEC15 [Intracel 92.4
PF06046566 Sec6: Exocyst complex component Sec6; InterPro: IP 91.34
KOG2211797 consensus Predicted Golgi transport complex 1 prot 90.56
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 87.1
PRK04778569 septation ring formation regulator EzrA; Provision 84.11
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 83.42
KOG2033863 consensus Low density lipoprotein B-like protein [ 83.29
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information 
Probab=100.00  E-value=5e-72  Score=604.50  Aligned_cols=228  Identities=45%  Similarity=0.722  Sum_probs=224.0

Q ss_pred             ccchhhhHHHHhHHHHHHHHHHHhHHHHHHhcchhh--hHHHHHhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhcc
Q 001240          883 SFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNT--AIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAK  960 (1116)
Q Consensus       883 lygL~eRiVA~ESl~fla~~l~~l~p~L~~~Lp~~~--~l~~Fy~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vk  960 (1116)
                      ||||+|||||+|||+|||++|+.++|+|+++||+++  ++++||++|+++++|||+|||+++|++++|+++++++|+++|
T Consensus         1 lygL~eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~vK   80 (234)
T PF10474_consen    1 LYGLAERIVAVESLSFLARQLESLRPYLESLLPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANVK   80 (234)
T ss_pred             CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcC
Confidence            799999999999999999999999999999999987  999999999999999999999999999999999999999999


Q ss_pred             ccccccCccccchHHHHHHHHHHHHhhh----ccCCCChHHHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHH
Q 001240          961 WEVKELGLEHNGYVDLLLGEFKHYKTRL----AHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQ 1036 (1116)
Q Consensus       961 Wdvkei~~~hs~YVD~Ll~e~~~f~~rL----~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q 1036 (1116)
                      ||+||+++|||+|||.|+++|+.|++||    ..++||+++++.||++++++++++||||||+|||||+||||+||||||
T Consensus        81 Wdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q  160 (234)
T PF10474_consen   81 WDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQ  160 (234)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999    567999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccCCCCCCcchHHHHHHHHhhccChhhHHHHHHhCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHh
Q 001240         1037 VLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIES 1113 (1116)
Q Consensus      1037 ~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~el~~Wi~~h~eYs~~ql~~Lv~~~~~~~~~~kK~r~~ll~~ie~ 1113 (1116)
                      +|+++||++++.+|+|+++|||+|||||||||+|+++||++|+|||++|+++||||++++   |||+|++||+.||+
T Consensus       161 ~~~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~e~~~W~~~h~eYs~~ql~~Lv~~~~~~---~kk~r~~ll~~ie~  234 (234)
T PF10474_consen  161 QLQNKLEKLSGIRPIPNREYVENYIKAYYLPEEELEEWIRTHTEYSKKQLVGLVNCAAAS---KKKTRQRLLNAIEE  234 (234)
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHcCCHHHHHHHHHhCcccCHHHHHHHHHHHHHh---hHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999875   89999999999995

The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
>KOG2939 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT) Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>KOG2939 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>KOG4182 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex Back     alignment and domain information
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1116
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 76.0 bits (186), Expect = 5e-14
 Identities = 92/639 (14%), Positives = 197/639 (30%), Gaps = 192/639 (30%)

Query: 108 SSEELSSIYGSRPQVQ-------------------VVEDLEEDFYE--------EDFDPV 140
           S EE+  I  S+  V                     VE++    Y+        E   P 
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 141 SHILEHIPPEE---NDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMN------ 191
                +I   +   ND + F K    RL    ++ + L  ++     V++ G+       
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTW 165

Query: 192 LVRELEKDLKVA-----NVICMN-GRRHITSSINEVSRDLIVNTNSKKKQALLDM--LPI 243
           +  ++    KV       +  +N    +   ++ E+ + L+   +            + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 244 LTELCHACDMQLALESLVEEGNYC---------------KAF----QVL--SEYLQLLDS 282
                    +Q  L  L++   Y                 AF    ++L  + + Q+ D 
Sbjct: 226 RIH-----SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 283 YSQLSAIQEMSRGVEVWLGRTLQKLDSLL---LGV-CQEFKEEAYINVVDAYALIGDVSG 338
            S  +            +  T  ++ SLL   L    Q+   E     +        +S 
Sbjct: 281 LSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV----LTTNPRR--LSI 332

Query: 339 LAEKIQSF------FMQEVISETHSVLKSIV--LEDHEVQMLNSRLTYSDLC-----ERI 385
           +AE I+        +      +  ++++S +  LE  E + +     +  L        I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPSAHI 387

Query: 386 PESKFRQCLLKTLAVLFKLICSYHEIMNF--QLENKTPNTKQ-KESDISMSSGEIHQINS 442
           P           L++++  +    ++M    +L   +   KQ KES IS     I  I  
Sbjct: 388 PT--------ILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTIS-----IPSIYL 433

Query: 443 DPGNSCNTVGVNGSTSGSVDKKS-GSSSMPESATTSSLVDPVQSN---------LANVES 492
           +       + V      ++ +      ++P++  +  L+ P             L N+E 
Sbjct: 434 E-------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 493 YDQVEAIRDDGSAASSSGSPWYY-LRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAA 551
            +++   R             +   R     F+ Q +R      W  + S +  L     
Sbjct: 487 PERMTLFRM-----------VFLDFR-----FLEQKIRHDSTA-WNASGSILNTL----- 524

Query: 552 VCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMV 611
                  Q L+ Y+    +I   +        ++   +  + +  F+    +N+      
Sbjct: 525 -------QQLKFYKP---YICDNDP-------KYERLVNAILD--FLPKIEENLI----- 560

Query: 612 LEKETWMKLPADTVQVVSFAGLVGDGAPLIVSSDSSSAR 650
             K T      D +++     L+ +   +   +     R
Sbjct: 561 CSKYT------DLLRI----ALMAEDEAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1116
3n1e_A141 Vacuolar protein sorting-associated protein 54; sp 98.17
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 96.63
2a2f_X325 Exocyst complex component SEC15; all helical struc 93.83
2d2s_A235 Exocyst complex component EXO84; tethering complex 91.41
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A Back     alignment and structure
Probab=98.17  E-value=1.4e-05  Score=78.93  Aligned_cols=119  Identities=16%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             HhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 001240          924 YVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLE 1003 (1116)
Q Consensus       924 y~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~ 1003 (1116)
                      |+++..-..|.+.-||..++..+-+.-.  ..+.  +||++-  +-+|+|...|.+|+.++++-|. ..+|++....|+.
T Consensus        10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~--~~l~--~Wd~k~--pvpS~~m~tl~Ke~~kLH~~Ls-~~LP~~~v~~Im~   82 (141)
T 3n1e_A           10 FDHITKDYHDHIAEISAKLVAIMDSLFD--KLLS--KYEVKA--PVPSPCFRNICKQMTKMHEAIF-DLLPEEQTQMLFL   82 (141)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHT--TCCCCS--SSSCHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HhccCC--CCCCHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHH
Confidence            6777777888888888777776543322  1223  899984  3599999999999999999997 6789999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCHHHHH--HHHHHHHHHHhhccccCCCC
Q 001240         1004 YGVEIVAETLIEGLSRVKRCTDEGRA--LMSLDLQVLINGLQHFVPVN 1049 (1116)
Q Consensus      1004 ~~i~~~~~~Lvegfs~vkKCs~eGRa--lMqlD~q~l~~~le~l~~~~ 1049 (1116)
                      .+...+.+.|-+.|.++.--|+.|+.  +|..|+..|.++|.+|.+..
T Consensus        83 ~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~  130 (141)
T 3n1e_A           83 RINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLK  130 (141)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCC
Confidence            99999999999999999999999997  59999999999999999854
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1116
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 93.25
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.25  E-value=1.4  Score=44.40  Aligned_cols=108  Identities=12%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             HHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcc------hhhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001240          245 TELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSA------IQEMSRGVEVWLGRTLQKLDSLLLGVCQEF  318 (1116)
Q Consensus       245 ~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c------~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~F  318 (1116)
                      +.|+-+-+.+..|+.++.+++|.+|++++.+++..+..+..-..      ...+..++++....+..+|...+.   ...
T Consensus         7 ~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~---~~~   83 (229)
T d2d2sa1           7 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---SSN   83 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---TCS
T ss_pred             hhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcC
Confidence            45777788889999999999999999999999999877654322      233445555555555555555543   222


Q ss_pred             cchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001240          319 KEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVL  359 (1116)
Q Consensus       319 d~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi  359 (1116)
                      .   ...+..+..+|.++.. .++-+..|+.+-......-+
T Consensus        84 ~---~~~~~~~v~~L~rLg~-~~~A~~lfL~~rs~~l~~~i  120 (229)
T d2d2sa1          84 E---IVHLKSGTENMIKLGL-PEQALDLFLQNRSNFIQDLI  120 (229)
T ss_dssp             S---HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             C---hHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHH
Confidence            2   3455555555554432 23346667766544444333