Citrus Sinensis ID: 001247

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110-----

MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

cccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHccHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEcccc

ccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccEEEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHEEEEEEcc

MGEKLEQQLKEVgskletppstkDGLVKLLKQAATCLselnqsppasiLEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEitritapeapysddvLKDIFQLIVGTfsglkdtggpsfgRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAvasddhpesvLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSsmsgdsrpghshidyheviydvyrcspqilsgvvpyltgeLLTDQLDTRLKAVGLVGdlfavpgsanneqFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradaPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCclrnfngsinqnefewipgkilrclydkdfgsdtiesvlcgslfptgfsvkdRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQmhqdgdapeIQKKILFCFRVmsrsfaepakAEENFLILDQLKDANVWKILMNLLdsntsfdqaftGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILArfsplllggTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGciaqtampvfeTRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKsylpvkdahirpGIDDLLGILKSMLsygemsediesssvDKAHLRLASAKAVLRLSrqwdhkipvdvfhltlrtpeisfpQAKKLFLSKVHQYVKDRLLDAKYACAFLFgiteskspefeEEKQNLADIIQMHHQMKARQIsvqsdansfatypeyIIPYLVHtfahhscpdideckdvkAFELVYCRLYFIVSMLIhkdedvkseasnkESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSrmednsqgvfssvslpstlykpyekkegddsLVSSLLTEFCFALASSFYRIIFFSN

MGEKLEQQLKevgskletppstkDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITritapeapysdDVLKDIFQLIVGTfsglkdtggpsfGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSclltdpsradAPQILTALCDRLLDFDENVRKQVVAVICDVAChalnsipvetvklvaerlrdksvlvkrytmerlADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLfptgfsvkdrvrHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALaaitkddglksLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIkskilrcsnkirndtkacwddrsELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKdedvkseasnkesISVIISIFRSIKCSEDIVDAaksknshaicDLGLSITKRLSRMEDNsqgvfssvslpstLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTeeelvnllkeeneIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETReseieefikskiLRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKEsisviisifrsiKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

**************************VKLLKQAATCLS********SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS**********SHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILE*************************EIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTI****************RLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSY*********************AKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGIT****************IIQ*********ISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKD***********SISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITK*********************************SLVSSLLTEFCFALASSFYRIIFF**

***********************DGLVKLLKQAATCLSE************MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSM*******HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLS****************ILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLE*************QSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSK*****************DRSELCLLKIYGIKTLVKSYLPVK*****PGIDDLLGILKSMLSYGEM*****SSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHH******************YPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSED****AKSKNSHAICDLGLSITKRLSRM*****GVFSSVSLPSTLY**************SLLTEFCFALASSFYRIIFFSN

*******************PSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEM*********DKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK********QNLADIIQMHH**********SDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDE********KESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

***********VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN*****TKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIExxxxxxxxxxxxxxxxxxxxxxxxRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLVSSLLTEFCFALASSFYRIIFFSN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1115	2.2.26 [Sep-21-2011]
Q5F3U9		1412	Sister chromatid cohesion	yes	no	0.908	0.717	0.248	4e-70
Q9NTI5		1447	Sister chromatid cohesion	yes	no	0.908	0.700	0.248	1e-69
Q4VA53		1446	Sister chromatid cohesion	yes	no	0.908	0.700	0.246	1e-68
Q6TRW4		1447	Sister chromatid cohesion	yes	no	0.908	0.700	0.246	2e-68
Q5U241		1464	Sister chromatid cohesion	N/A	no	0.910	0.693	0.242	2e-68
Q498H0		1448	Sister chromatid cohesion	N/A	no	0.910	0.700	0.245	1e-67
Q29RF7		1337	Sister chromatid cohesion	no	no	0.911	0.759	0.247	6e-65
A1L1F4		1320	Sister chromatid cohesion	no	no	0.898	0.759	0.243	7e-65
A4L9P7		1333	Sister chromatid cohesion	no	no	0.911	0.762	0.246	1e-64
Q5F3V3		1330	Sister chromatid cohesion	no	no	0.912	0.764	0.247	4e-64

>sp\|Q5F3U9\|PDS5B_CHICK Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus GN=PDS5B PE=2 SV=3	Back alignment and function desciption

 Score =  267 bits (682), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 271/1090 (24%), Positives = 492/1090 (45%), Gaps = 77/1090 (7%)

Query: 9    LKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLN---AIVQPVLL 65
            +KE+  K+     +K+ +V+ LK       +++Q       E  + +LN    +     L
Sbjct: 19   VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKELYLNLALHLASDFFL 69

Query: 66   KHQDKDVKLLVATCICEITRITAPEAPY-SDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV 124
            KH DKDV+LLVA C+ +I RI APEAPY S D LKDIF  I     GL+DT  P F R  
Sbjct: 70   KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129

Query: 125  VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183
             +LE +A  +S  +  +LE  +E+  ++Y T F+V ++ H + V   M  +M  ++ E +
Sbjct: 130  YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189

Query: 184  DIQEDLLVILLSAL---GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS-MSGDSRPG 239
             + ++LL  +L  L    +N N  A  LA  ++++ A  +E  I  F     M G +   
Sbjct: 190  TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249

Query: 240  HSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299
                   ++I ++Y     +L  V+P L  +L ++  + RL+ V L+  +F    S    
Sbjct: 250  DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309

Query: 300  QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359
            Q   ++  +L R  D  V +R+  ++    CL+  P  A    +   L  R  D +E +R
Sbjct: 310  QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAK--DLTEYLKVRSHDPEEAIR 367

Query: 360  KQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419
              V+  I   A   L  +    +  V ER  DK   V++  M  LA I++   L++  G 
Sbjct: 368  HDVIVSIVTAAKKDLLLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYSLQSEAGK 427

Query: 420  INQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRI 478
                +  WI  K+L   Y         +E +    + P      +R++    +++  D  
Sbjct: 428  EAAKQISWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETNERMKCLYYLYATLDSN 487

Query: 479  EMKALEKILEQKQRLQQEMQRYLSL-RQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
             +KAL ++ + +  L+ +++  + L +Q   D  +  I  K++    V++R+  +P KA+
Sbjct: 488  AVKALNEMWKCQNLLRHQVKDLVDLIKQPKTDASSKAIFSKVM----VITRNLPDPGKAQ 543

Query: 538  ENFLILDQL--KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG-AKHRLYDFLSTLSM 594
            +      Q+   D  +   L  L+    S  QA     ++ K LG  K     FL  +  
Sbjct: 544  DFMKKFTQVLEDDEKIRSQLEMLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKF 603

Query: 595  ---KCSYLLFNKEHVKEILLEVAAQ---------KSSANAQFMQSCMDILGILARFSPLL 642
               + + +  + E +  ++ +V            +     Q +++ +++L +L+   P+ 
Sbjct: 604  LLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPIS 663

Query: 643  LGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700
                E  E L+  LK ++E + E  L +    G  I E      S++  +L     +G  
Sbjct: 664  FHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKAKKGPP 723

Query: 701  RQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT--HLPAVLQSLGCIAQTAMPVFE 758
            RQAKYA+H + AI      +  + +++ L   L+     HL   L ++G IA  A   F 
Sbjct: 724  RQAKYAIHCINAIFSSKETQ-FAQIFEPLHKSLDPSNFEHLITPLVTIGHIAMLAPDQFA 782

Query: 759  TR-ESEIEEFIKSKILRCSNKIRNDTKACW---DDRSELCLLKIYGIKTLVKSYLPVKDA 814
               +S +  FI   +L         T   W   ++ S   L+KI  IK +V+  L +K+ 
Sbjct: 783  APLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEEVSPETLVKIQAIKMMVRWLLGMKNN 842

Query: 815  HIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQ--WDHKIPVD 872
            H + G   L  +   + S G+++E  + S  D + LRLA+  A+++L+++  +   I ++
Sbjct: 843  HSKSGTSTLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLE 902

Query: 873  VFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYA--CAFLFGITESKSPEFEEE-- 928
             + L          Q +++F  K+H+ +    L  +Y   CA       +K P  E    
Sbjct: 903  QYQLCALAINDECYQVRQIFAQKLHKGLSRLRLPLEYMAICALC-----AKDPVKERRAH 957

Query: 929  -KQNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKA 987
             +Q L   I +  +   +  +V     S    PEY++PY +H  AH   PD  + +D++ 
Sbjct: 958  ARQCLVKNINVRREYLKQHAAVSEKLLSL--LPEYVVPYTIHLLAHD--PDYVKVQDIEQ 1013

Query: 988  FELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIV---DAAKSKNS 1044
             + +   L+FI+ +L+ K+E+         S + I  +  +IK ++D     DA  ++  
Sbjct: 1014 LKDIKECLWFILEILMAKNEN--------NSHAFIRKMVENIKQTKDAQGPDDAKMNEKL 1065

Query: 1045 HAICDLGLSI 1054
            + +CD+ ++I
Sbjct: 1066 YTVCDVAMNI 1075

Plays a role in androgen-induced proliferative arrest. Required for maintenance of sister chromatid cohesion during mitosis.
Gallus gallus (taxid: 9031)

>sp\|Q9NTI5\|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1	Back alignment and function description

>sp\|Q4VA53\|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1	Back alignment and function description

>sp\|Q6TRW4\|PDS5B_RAT Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus GN=Pds5b PE=2 SV=2	Back alignment and function description

>sp\|Q5U241\|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2	Back alignment and function description

>sp\|Q498H0\|PD5BA_XENLA Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis GN=pds5b-a PE=1 SV=1	Back alignment and function description

>sp\|Q29RF7\|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1	Back alignment and function description

>sp\|A1L1F4\|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1	Back alignment and function description

>sp\|A4L9P7\|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1	Back alignment and function description

>sp\|Q5F3V3\|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1115
255585406		1735	androgen induced inhibitor of proliferat	0.977	0.628	0.781	0.0
147777785		1922	hypothetical protein VITISV_030148 [Viti	0.961	0.557	0.767	0.0
224139450		1417	predicted protein [Populus trichocarpa]	0.983	0.774	0.757	0.0
224089565		1411	predicted protein [Populus trichocarpa]	0.968	0.765	0.743	0.0
449443672		1692	PREDICTED: sister chromatid cohesion pro	0.978	0.644	0.735	0.0
356522079		1641	PREDICTED: sister chromatid cohesion pro	0.973	0.661	0.735	0.0
356564452		1642	PREDICTED: sister chromatid cohesion pro	0.973	0.660	0.734	0.0
297794445		1608	binding protein [Arabidopsis lyrata subs	0.980	0.679	0.693	0.0
10177905		1638	unnamed protein product [Arabidopsis tha	0.979	0.666	0.691	0.0
186530158		1607	sister chromatid cohesion protein PDS5 [	0.980	0.680	0.691	0.0

>gi\|255585406\|ref\|XP_002533398.1\| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis] gi\|223526757\|gb\|EEF28984.1\| androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1752 bits (4538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1097 (78%), Positives = 972/1097 (88%), Gaps = 7/1097 (0%)

Query: 1    MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
            M  KLE+QLKEVGSKLE PPSTKD LVKLLKQAA CL E++QSP A++LE+MQPFLNAIV
Sbjct: 1    MALKLEEQLKEVGSKLENPPSTKDALVKLLKQAAACLPEMDQSPSATVLESMQPFLNAIV 60

Query: 61   QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
            +P LLKHQD+DVKLLVATCICEITRITAPEAPYSDD+LKDIF LIVGTFSGL DT GPSF
Sbjct: 61   KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDILKDIFHLIVGTFSGLSDTSGPSF 120

Query: 121  GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
            GRRVVILETLAKYRSCVVMLDLECD+LVN M+STFF VASDDH +SVLSSM+TIM VL+E
Sbjct: 121  GRRVVILETLAKYRSCVVMLDLECDDLVNTMFSTFFTVASDDHQDSVLSSMKTIMAVLIE 180

Query: 181  ESEDIQEDLLVILLSALGRNKND---TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
            ESED++EDLL I+LS LGR+++D    ARRLAMNVIEQ AGKLE GIKQFLVSS+SGD+R
Sbjct: 181  ESEDVREDLLFIVLSVLGRDRSDISSAARRLAMNVIEQGAGKLEPGIKQFLVSSISGDNR 240

Query: 238  PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
              +S ID+HEVIYDVYRC+PQILSGV+PYLTGELLTDQLD RLKAV LVGDLF++PGSA 
Sbjct: 241  SANSQIDHHEVIYDVYRCAPQILSGVIPYLTGELLTDQLDIRLKAVRLVGDLFSLPGSAI 300

Query: 298  NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
            +E F  +FSEFLKRLTDR V VRMS +E VKSCLL++P RA+A QI++ALCDRLLD+DEN
Sbjct: 301  HEAFQPIFSEFLKRLTDRGVEVRMSAVERVKSCLLSNPYRAEASQIISALCDRLLDYDEN 360

Query: 358  VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
            VRKQVV VICDVACHAL+SIPVET+KLV ERLRDKS+LVKRYTMERLA++FR  C+++  
Sbjct: 361  VRKQVVDVICDVACHALDSIPVETIKLVVERLRDKSLLVKRYTMERLAEVFRIYCIKSSG 420

Query: 418  GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
            GSI+  +F+WIPGKILRC YD+DF SDTIESVLCGS+FP  FSV DRV+ WVR+FS FD+
Sbjct: 421  GSISAGDFDWIPGKILRCFYDRDFRSDTIESVLCGSMFPMEFSVNDRVKLWVRVFSVFDK 480

Query: 478  IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
            +E+KALE+ILEQKQRLQQEMQRY+ LRQMHQDGDAPEIQKK+LFCFR+MSRSFAEPAKAE
Sbjct: 481  VEVKALERILEQKQRLQQEMQRYIFLRQMHQDGDAPEIQKKVLFCFRIMSRSFAEPAKAE 540

Query: 538  ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
            ENFLILDQLKD N+WKIL NLLD+NT+F QA T R+DLLKILG KHRLYDFLS  S+KCS
Sbjct: 541  ENFLILDQLKDINIWKILTNLLDANTNFHQACTSREDLLKILGEKHRLYDFLSNFSVKCS 600

Query: 598  YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE 657
            YLLFNKEHVKEIL E A  KS+ N Q +QSCMDIL +LARFSP+LL G EEELV+ LK++
Sbjct: 601  YLLFNKEHVKEILAEAATHKSTGNTQLIQSCMDILVLLARFSPMLLSGAEEELVSFLKDD 660

Query: 658  NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
            NEIIKEG LH+LAKAGGTIREQLA +SSS+DL+LERLCLEGSRRQAKYAVHALAAITKDD
Sbjct: 661  NEIIKEGALHILAKAGGTIREQLAVSSSSIDLILERLCLEGSRRQAKYAVHALAAITKDD 720

Query: 718  GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSN 777
            GLKSLSVLYKRLVDMLEEK HLPAVLQSLGCIA+TAM VFETRE EIEEFIKSKIL+ S+
Sbjct: 721  GLKSLSVLYKRLVDMLEEKRHLPAVLQSLGCIAETAMAVFETREGEIEEFIKSKILKSSS 780

Query: 778  KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
            K    TKA WD RSELCLLKIYGIKTLVKSYLPVKDA +RP I  LL IL+++L +GE+S
Sbjct: 781  KAEESTKANWDGRSELCLLKIYGIKTLVKSYLPVKDAQLRPNIKGLLDILRNVLLFGEIS 840

Query: 838  EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
            EDIESSSVDKAH+RLASAKAVLRLS+ WDHKIP+DVFHLTLRTPEI+FPQA+KLFLSKVH
Sbjct: 841  EDIESSSVDKAHMRLASAKAVLRLSKHWDHKIPIDVFHLTLRTPEIAFPQARKLFLSKVH 900

Query: 898  QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
            QY+KDRLLD KYACAFLF IT  K  +FEEEKQNLADI+Q+H+Q KARQ+SVQSDAN+ A
Sbjct: 901  QYIKDRLLDVKYACAFLFNITAFKLLDFEEEKQNLADIVQVHYQAKARQLSVQSDANTSA 960

Query: 958  TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASN-- 1015
             Y E ++PYLVH  AHHSCP+ID+CKDVKAFE VY +L+ ++S+L+HKDEDVKSE++   
Sbjct: 961  AYAEDLLPYLVHALAHHSCPNIDDCKDVKAFEPVYRQLHLMLSVLVHKDEDVKSESTTNK 1020

Query: 1016 -KESISVIISIFRSIKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSL 1074
             KE IS I+SIF+SIKCSED+VDAAKSKNSHAI +LGLSITKRL++ ED  Q + SS  L
Sbjct: 1021 EKEIISAIVSIFQSIKCSEDVVDAAKSKNSHAISELGLSITKRLAQKED-IQILASSAPL 1079

Query: 1075 PSTLYKPYEKKEGDDSL 1091
            P  LYK YEKKEGDDSL
Sbjct: 1080 PPILYKSYEKKEGDDSL 1096

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147777785\|emb\|CAN75734.1\| hypothetical protein VITISV_030148 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224139450\|ref\|XP_002323118.1\| predicted protein [Populus trichocarpa] gi\|222867748\|gb\|EEF04879.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224089565\|ref\|XP_002308759.1\| predicted protein [Populus trichocarpa] gi\|222854735\|gb\|EEE92282.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449443672\|ref\|XP_004139601.1\| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356522079\|ref\|XP_003529677.1\| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max]	Back alignment and taxonomy information

>gi\|356564452\|ref\|XP_003550468.1\| PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Glycine max]	Back alignment and taxonomy information

>gi\|297794445\|ref\|XP_002865107.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297310942\|gb\|EFH41366.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|10177905\|dbj\|BAB11316.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186530158\|ref\|NP_001119390.1\| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana] gi\|332008170\|gb\|AED95553.1\| sister chromatid cohesion protein PDS5 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1115
TAIR\|locus:2169058		1607	AT5G47690 [Arabidopsis thalian	0.979	0.679	0.671	0.0
RGD\|1307094		1333	Pds5a "PDS5, regulator of cohe	0.659	0.551	0.249	1.7e-66
UNIPROTKB\|Q29RF7		1337	PDS5A "Sister chromatid cohesi	0.659	0.549	0.249	1.2e-65
UNIPROTKB\|E2R7R4		1337	PDS5A "Uncharacterized protein	0.659	0.549	0.249	1.6e-65
UNIPROTKB\|F1N7G8		1449	PDS5B "Uncharacterized protein	0.496	0.382	0.268	2.2e-64
UNIPROTKB\|Q5F3U9		1412	PDS5B "Sister chromatid cohesi	0.496	0.392	0.270	3.2e-64
UNIPROTKB\|F1P3B8		1446	PDS5B "Sister chromatid cohesi	0.496	0.383	0.270	3.7e-64
UNIPROTKB\|F1Q0Z0		1447	PDS5B "Uncharacterized protein	0.496	0.382	0.268	9.3e-64
UNIPROTKB\|Q9NTI5		1447	PDS5B "Sister chromatid cohesi	0.496	0.382	0.268	1.2e-63
UNIPROTKB\|Q5U241		1464	pds5b-b "Sister chromatid cohe	0.496	0.378	0.263	2.3e-63

TAIR\|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3828 (1352.6 bits), Expect = 0., P = 0.
 Identities = 737/1097 (67%), Positives = 889/1097 (81%)

Query:     1 MGEKLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIV 60
             M +K E+QLKE+GSKL+  P +KD L+KLLK+AA CLSEL QSPP ++L+++QPFL+A++
Sbjct:     1 MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60

Query:    61 QPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSF 120
             +P +L HQDKDVKLLVA+C+ EITRITAPEAPYSD+++KDIFQLIV  F+GL D  GPSF
Sbjct:    61 KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120

Query:   121 GRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180
             GRRV+ILET+AKYRSCVVMLDLECD+LV E+++TF  VA DDHPE V SSMQ IMIVLLE
Sbjct:   121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLE 180

Query:   181 ESEDIQEDLLVILLSALGRNKNDT---ARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR 237
             ESED+QE LL+ILLS LGRN++D    ARRLAM VIE CA K+E+ IKQFL+SSMSGDSR
Sbjct:   181 ESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIEHCAPKVESDIKQFLISSMSGDSR 240

Query:   238 PGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297
                S IDYHEVIYD+YRC+PQ LSGV PYLTGELL D+L+TRLK VGLVG+LF++PG   
Sbjct:   241 FSSSQIDYHEVIYDLYRCAPQALSGVAPYLTGELLADKLETRLKVVGLVGELFSLPGRVI 300

Query:   298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357
             +E+F S+F EFLKRLTDR+V VRM++L+H+K CLL+DP RA+A QI++ALCDRLLD+DEN
Sbjct:   301 SEEFDSIFLEFLKRLTDRVVEVRMAILDHIKDCLLSDPLRAEASQIISALCDRLLDYDEN 360

Query:   358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417
             +RKQVVAVICDV+  AL SIPV+T+KLVAERLRDK++LVK YTMERL ++FR  CLR  +
Sbjct:   361 IRKQVVAVICDVSVSALTSIPVDTMKLVAERLRDKAILVKTYTMERLTELFRVYCLRCAD 420

Query:   418 GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDR 477
             G ++  +F WIPGKILRCLYDKDF SDTIE +LC SLFP+ FSV+D+V+HW++IFSGFD+
Sbjct:   421 GKVDTGDFNWIPGKILRCLYDKDFRSDTIEYILCSSLFPSDFSVRDKVKHWIQIFSGFDK 480

Query:   478 IEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537
             +E KA EKILEQ+QR+QQEMQRYLS++Q  Q  DAPEIQKKILF FRVMSR+F++P K E
Sbjct:   481 VETKAFEKILEQRQRIQQEMQRYLSIKQTQQTADAPEIQKKILFGFRVMSRAFSDPPKTE 540

Query:   538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCS 597
             +NFLILDQLKDAN+WKIL NLLD NTS  QA   RDD+LKIL  KH LYDFLSTLS+KCS
Sbjct:   541 QNFLILDQLKDANIWKILTNLLDPNTSITQASRIRDDMLKILSEKHSLYDFLSTLSIKCS 600

Query:   598 YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTXXXXXXXXXXX 657
             YLLF+KE+VKEIL EV+ +KSS N   +Q CMD LG+LA F P L  G            
Sbjct:   601 YLLFSKEYVKEILAEVSVRKSSKNTLGIQPCMDFLGLLACFCPSLFDGAEEELISFLKDD 660

Query:   658 XXIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717
               ++KEG L +LAKAGGTIRE L   +SSVDLLLER+C+EG+R+QAKYAVHALA+ITKDD
Sbjct:   661 DEMMKEGTLKILAKAGGTIRENLIVLASSVDLLLERICVEGNRKQAKYAVHALASITKDD 720

Query:   718 GLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPVFETRXXXXXXXXXXXXLRCSN 777
             GLKSLSVLYKRLVDMLE+K + PAVLQ LGCIAQ AMPV+ETR            L+  +
Sbjct:   721 GLKSLSVLYKRLVDMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILKLKS 780

Query:   778 KIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMS 837
             +  +D K  WDD+SE+C LKIYGIKTLVKSYLP KDA +R G+DDLLGILK++LS+GE+S
Sbjct:   781 ETVDDKKLSWDDKSEICQLKIYGIKTLVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVS 840

Query:   838 EDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVH 897
             ED+ESSSVDKAHLRLA+AKAVLRLSR WD KIP+++FHLTL+TPEI FP AKK+FL KVH
Sbjct:   841 EDLESSSVDKAHLRLAAAKAVLRLSRHWDDKIPIEIFHLTLKTPEIPFPTAKKIFLGKVH 900

Query:   898 QYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957
             QYVKDR+L+ KYAC+FLF IT S   E EE+K NLADIIQ  +Q K R+IS Q+DANS  
Sbjct:   901 QYVKDRVLEMKYACSFLFDITGSNVLESEEDKHNLADIIQHSYQTKVRKISAQTDANSVT 960

Query:   958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKE 1017
              YP +I+PYLVH  AHHSCPD+++CKDVK +E++Y +LY I+SML+HK+ED K+E  +KE
Sbjct:   961 LYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISMLLHKEEDGKTEDIDKE 1020

Query:  1018 XXX--XXXXXXXXXKCSEDIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVFSSVSLP 1075
                           K SED+ DA KSKNSHAIC+LGLSI   L++ E + QG  + VSLP
Sbjct:  1021 REYVPTIILIFHSIKQSEDVTDATKSKNSHAICELGLSIINHLTQKEPDLQGEITPVSLP 1080

Query:  1076 STLYKPYEKKEGDDSLV 1092
              TLYKP EK EGD S V
Sbjct:  1081 PTLYKPSEKVEGDKSQV 1097

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0007067 "mitosis" evidence=RCA

RGD\|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N7G8 PDS5B "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5F3U9 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P3B8 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q0Z0 PDS5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NTI5 PDS5B "Sister chromatid cohesion protein PDS5 homolog B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5U241 pds5b-b "Sister chromatid cohesion protein PDS5 homolog B-B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVI.584.1	hypothetical protein (1417 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1115
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	100.0
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	99.08
PTZ00429		746	beta-adaptin; Provisional	98.67
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.59
PTZ00429		746	beta-adaptin; Provisional	98.19
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.05
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.99
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.98
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	97.65
PRK09687		280	putative lyase; Provisional	97.64
PRK09687		280	putative lyase; Provisional	97.63
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.33
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.12
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.09
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.91
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.9
KOG1242		569	consensus Protein containing adaptin N-terminal re	96.79
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	96.72
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.68
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.58
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.23
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.12
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.0
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	95.84
KOG2025		892	consensus Chromosome condensation complex Condensi	95.62
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	95.53
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	95.34
KOG1824		1233	consensus TATA-binding protein-interacting protein	95.19
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.17
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.1
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.98
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	94.86
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	94.74
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	94.67
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.67
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	94.55
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.52
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	94.49
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	94.44
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	94.33
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.3
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	94.28
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.05
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	93.94
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	93.22
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	93.06
KOG0414		1251	consensus Chromosome condensation complex Condensi	92.96
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	92.26
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	92.14
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	91.95
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	91.91
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	91.53
COG5098		1128	Chromosome condensation complex Condensin, subunit	91.51
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	91.27
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.15
KOG2259		823	consensus Uncharacterized conserved protein [Funct	91.1
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	90.9
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	90.81
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	90.77
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	90.56
KOG0414		1251	consensus Chromosome condensation complex Condensi	89.72
KOG2259		823	consensus Uncharacterized conserved protein [Funct	89.49
TIGR02270		410	conserved hypothetical protein. Members are found	89.29
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	89.11
TIGR02270		410	conserved hypothetical protein. Members are found	89.1
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	88.66
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	88.46
KOG2956		516	consensus CLIP-associating protein [General functi	87.98
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	87.43
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	87.2
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	87.04
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	86.74
COG5098		1128	Chromosome condensation complex Condensin, subunit	86.18
PF01347		618	Vitellogenin_N: Lipoprotein amino terminal region;	85.39
COG5096		757	Vesicle coat complex, various subunits [Intracellu	84.95
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	84.17
COG1413		335	FOG: HEAT repeat [Energy production and conversion	83.17
COG1413		335	FOG: HEAT repeat [Energy production and conversion	82.2
PF14676		158	FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4	82.15
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	81.78
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	81.76
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	81.13
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	80.43

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1e-135  Score=1273.43  Aligned_cols=1049  Identities=31%  Similarity=0.472  Sum_probs=884.7

Q ss_pred             HccccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCC
Q 001247           12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEA   91 (1115)
Q Consensus        12 ~g~~l~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APda   91 (1115)
                      -|-+....|.+++||++||++|+++|++++|++  .+.+++.|++.+|+++.||+|+|+|||++||||+|||||||||||
T Consensus         8 ~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea   85 (1266)
T KOG1525|consen    8 PGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA   85 (1266)
T ss_pred             CCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC
Confidence            355566678999999999999999999999996  689999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHH
Q 001247           92 PYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSM  171 (1115)
Q Consensus        92 Py~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m  171 (1115)
                      ||+++||+|||++|++||.||+|+.||||.||+||||+|+.||.|++|.|.+|++++.++|++||++++.+|+++|.+ |
T Consensus        86 Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~  164 (1266)
T KOG1525|consen   86 PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-M  164 (1266)
T ss_pred             CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-H
Confidence            999999999999999999999999999999999999999999955455555599999999999999999999999999 9


Q ss_pred             HHHHHHHhcccccccHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCcchHHH
Q 001247          172 QTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYHE  247 (1115)
Q Consensus       172 ~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~-~~~~~~~~~h~  247 (1115)
                      .+||+.+|.|.+.||.++|++||.+|..++.   ..|+++|.++++.|++.+++.+++||++.+.++. ..+....++|+
T Consensus       165 ~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he  244 (1266)
T KOG1525|consen  165 LDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHE  244 (1266)
T ss_pred             HHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHH
Confidence            9999999999999999999999999976543   3999999999999999999999999999887754 34556678999


Q ss_pred             HHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHh
Q 001247          248 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV  327 (1115)
Q Consensus       248 li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~  327 (1115)
                      +|++||+++|++|++|||||++||.+|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+++
T Consensus       245 ~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~  324 (1266)
T KOG1525|consen  245 LILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESI  324 (1266)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247          328 KSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI  407 (1115)
Q Consensus       328 ~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l  407 (1115)
                      ++||.+||+...+..+..+++.|..|+|++||..+|.++|+++.+.+..++. +++.++||+||||+.||++||++|+++
T Consensus       325 ~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laql  403 (1266)
T KOG1525|consen  325 KQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQL  403 (1266)
T ss_pred             HHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            9999999998777788889999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHH-hhhhccCCCcchhhcccchHHHhhhhhccCCCch-hHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001247          408 FRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEK  485 (1115)
Q Consensus       408 y~~-~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~-~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~  485 (1115)
                      |+. |+...+.|...+..|.|||++||++||.|+.+.+ +||++++++|+|+++++++|+++|+++|++||..+.++|..
T Consensus       404 Yk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~  483 (1266)
T KOG1525|consen  404 YKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNE  483 (1266)
T ss_pred             HHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHH
Confidence            997 4555566778889999999999999999987654 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh--hhHHHHHHHHHHhccCC
Q 001247          486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSNT  563 (1115)
Q Consensus       486 il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l--~D~r~~~llk~~~~~~s  563 (1115)
                      |+++|.++|.+++.|+.+++..+.++   ..+++...|..++..||||.+.....++|++.  .+..+..++..+.++..
T Consensus       484 i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~  560 (1266)
T KOG1525|consen  484 ILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSI  560 (1266)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999987765443   66677777889999999999999999999763  66788889999999988


Q ss_pred             CHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccch-hHHHHHHHHHHhhc-------ccch--hhhhHHHH
Q 001247          564 SFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQK-------SSAN--AQFMQSCM  629 (1115)
Q Consensus       564 ~~~~~~~a~~ellkkl~~----~~~~~~~~~~Ll~R~s~~i~n~-s~V~~Ll~~~~~~~-------~~~~--~~~~~~a~  629 (1115)
                      +|++..-.+++.+.+++.    +..+..+.+.+..|..++.++. +.+..+++....+.       ..++  ......+.
T Consensus       561 ~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~  640 (1266)
T KOG1525|consen  561 SCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKK  640 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHH
Confidence            888776556666666554    4457788899999999988887 77777776443211       1111  12334567


Q ss_pred             HHHHHHHhhCCcCccccH--HHHHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHH
Q 001247          630 DILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAV  707 (1115)
Q Consensus       630 ~LL~~iS~~~P~lf~~~~--~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av  707 (1115)
                      .++.++|..+|.+|....  ..++..+....+...+.+|+.+.+.|+......+...+.+.+.+.+++..|+|.+||+|+
T Consensus       641 ~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~  720 (1266)
T KOG1525|consen  641 YLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAK  720 (1266)
T ss_pred             HHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHh
Confidence            899999999999988873  666666666555677889999988884444444455667889999999999999999999


Q ss_pred             HHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccccC
Q 001247          708 HALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRN  781 (1115)
Q Consensus       708 ~~L~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~L~sLa~ia~~~p~~f~~~-~~~I~~fiik~iL~~~~~~~~  781 (1115)
                      +|+.++...+.. .+.+.++.+.+.+..+     .++.+.+.+||+|+.+.|..|.++ ..++..||+|+++..++.+++
T Consensus       721 ~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e  799 (1266)
T KOG1525|consen  721 RCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGE  799 (1266)
T ss_pred             hhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcccc
Confidence            999988776422 3345566677766433     499999999999999999666554 778999999999888888776


Q ss_pred             C-CCCCCCCC----hhhHHHHHHHHHHHHHhhcCCCccc--cccchHHHHHHHHHhh-ccCccccCCCCChhHHhhhhHH
Q 001247          782 D-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAH--IRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLA  853 (1115)
Q Consensus       782 ~-~~~~W~~~----~~~~~~K~~aLK~lvn~l~~~~~~~--~~~~~~~l~~lL~~i~-~~Gel~~~~~t~~~~~srLRL~  853 (1115)
                      . ....|++.    +..+.+|..+++++++||++...+.  .+......+.+|..++ +.|+...+..+|..+++++|+.
T Consensus       800 ~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~  879 (1266)
T KOG1525|consen  800 KNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLT  879 (1266)
T ss_pred             ccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhh
Confidence            5 66788763    4467889999999999999986642  1111122566777765 7999999999999999999999


Q ss_pred             HHHHHHHhhhh--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHh
Q 001247          854 SAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQN  931 (1115)
Q Consensus       854 Aa~~lLKLa~~--~~~~i~~~~~~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~l~~ry~~lf~la~~~~~~~~~~~~k~~  931 (1115)
                      |+.+++|+|..  +..+++++++..+.+.++|++++||..|+.|+++++.+..+|.-|++.|.++..+..... ...+..
T Consensus       880 a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~~~  958 (1266)
T KOG1525|consen  880 AKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANKRE  958 (1266)
T ss_pred             hhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHHHH
Confidence            99999999976  578899999998888899999999999999999999999999999999988542211100 011111


Q ss_pred             HHHHHHHHHHHHHhhhhhccccccccCcchhhHHHHHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhcccccccc
Q 001247          932 LADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKS 1011 (1115)
Q Consensus       932 l~~~i~~~~~~~~r~~~~~~~~~~~~~~pE~~l~~LIhlLAHH~~pd~~~~~~~~~~~~~~~~l~F~l~~l~~~~e~~~~ 1011 (1115)
                      ..+-...+++.+.....+.++. .....|||+.+|.+|++|||  |++...+++..|-.+..++||.++.+..       
T Consensus       959 ~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~------- 1028 (1266)
T KOG1525|consen  959 EETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDE------- 1028 (1266)
T ss_pred             hhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhh-------
Confidence            1122222223233333333321 15688999999999999999  9999888999999999999999999864       


Q ss_pred             cccccccHHHHHH----HHHHhhcccccccc---ccccchHHHHHhHHHHHHHHhc-cCCCCCccccccCCCcccccCCC
Q 001247         1012 EASNKESISVIIS----IFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1083 (1115)
Q Consensus      1012 ~~a~~eN~sll~~----la~riKq~~Da~~~---~~s~~ly~l~DLaq~ii~~~~~-k~w~l~~yPgkv~LP~~lf~p~~ 1083 (1115)
                           +|..+-.+    +.+-+++.+|...+   ..+..||+|||+|+.++..... .+|+.++|||+.+||..+|++..
T Consensus      1029 -----~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1029 -----ENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred             -----hhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence                 33333333    44445667777644   3356799999999999998775 67999999999999999999977


Q ss_pred             C
Q 001247         1084 K 1084 (1115)
Q Consensus      1084 s 1084 (1115)
                      +
T Consensus      1104 ~ 1104 (1266)
T KOG1525|consen 1104 D 1104 (1266)
T ss_pred             h
Confidence            4

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1115
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-06
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 86.1 bits (212), Expect = 4e-17
 Identities = 94/638 (14%), Positives = 201/638 (31%), Gaps = 138/638 (21%)

Query: 507  HQDGDAPEIQ---KKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNT 563
            H D +  E Q   K IL  F             E+ F+      + +   +     D   
Sbjct: 6    HMDFETGEHQYQYKDILSVF-------------EDAFV-----DNFDCKDVQ----DM-- 41

Query: 564  SFDQAFTGR--DDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEIL----------L 611
                  +    D ++    A         TL  K   ++  ++ V+E+L          +
Sbjct: 42   -PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPI 98

Query: 612  EVAAQKSSANAQFMQSCMDIL-GILARFSPLLLGGTEEELVNLLKEENEIIKEG---ILH 667
            +   ++ S   +      D L      F+   +  +  +    L++    ++     ++ 
Sbjct: 99   KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156

Query: 668  --------VLAKAGGTIREQ--------------LAATSSSVDLL--LERLCLEGSRRQA 703
                     +A                       L   +S   +L  L++L  +      
Sbjct: 157  GVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 704  KYAVHALAAITKDDGLKS-LSVL-----YKR--LV-DMLEEKTHLPAVLQSLGCIAQTAM 754
              + H+     +   +++ L  L     Y+   LV   ++      A   +L C  +   
Sbjct: 215  SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSC--KI-- 268

Query: 755  PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDA 814
             +  TR  ++ +F+ +        + + +     D  +  LLK    +      LP +  
Sbjct: 269  -LLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVL 323

Query: 815  HIRPGIDDLLG-ILKSMLS---------YGEMSEDIESS--SVDKAHLR-LASAKAVLRL 861
               P    ++   ++  L+           +++  IESS   ++ A  R +    +V   
Sbjct: 324  TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383

Query: 862  SRQWDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESK 921
                   IP  +  L       S      + ++K+H+Y    L++ K        I    
Sbjct: 384  ----SAHIPTILLSLIWFDVIKSDVM---VVVNKLHKY---SLVE-KQPKESTISI---- 428

Query: 922  SPE-FEEEKQNLADIIQMHHQM-KARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDI 979
             P  + E K  L +   +H  +     I    D++     P Y+  Y      HH   +I
Sbjct: 429  -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHH-LKNI 484

Query: 980  DECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIIS----IFRSIKCSE-- 1033
            +  + +  F +V+    F+   + H      +  S   ++  +      I  +    E  
Sbjct: 485  EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 1034 --DIVDAAKSKNSHAICDLGLSITKRLSRMEDNSQGVF 1069
               I+D       + IC     +  R++ M ++   +F
Sbjct: 545  VNAILDFLPKIEENLICSKYTDLL-RIALMAEDE-AIF 580

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1115
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.16
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	98.99
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.99
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.95
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	98.94
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.93
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.86
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.77
1qgr_A		876	Protein (importin beta subunit); transport recepto	98.75
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.75
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.6
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.45
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.39
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	98.32
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.23
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.14
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	98.11
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.09
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	98.02
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	98.01
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	97.92
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	97.91
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.85
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.83
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.81
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.67
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.64
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.6
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	97.55
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	97.54
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.54
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.49
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	97.46
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	97.44
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	97.27
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	97.24
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	97.18
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	97.08
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.82
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	96.82
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.8
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.69
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	96.63
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.57
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.52
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	96.47
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.3
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	96.27
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	96.25
1te4_A		131	Conserved protein MTH187; methanobacterium thermoa	96.11
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.1
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	95.83
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	95.78
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.27
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	95.12
2x19_B		963	Importin-13; nuclear transport, protein transport;	94.72
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.54
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.49
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	94.41
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	94.13
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	94.01
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	93.67
3gs3_A		257	Symplekin, LD45768P; helix-turn-helix heat repeat	93.52
2x1g_F		971	Cadmus; transport protein, developmental protein,	93.44
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	93.37
3o2t_A		386	Symplekin; heat repeat, scaffold, protein binding;	93.12
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	93.05
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	91.69
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	91.68
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	91.18
3l9t_A		240	Putative uncharacterized protein SMU.31; hypotheti	91.03
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	90.12
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	89.88
4ady_A		963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.85
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	88.57
3b2a_A		265	TON_1937, putative uncharacterized protein; heat-r	88.17
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	87.58
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	87.2
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	86.12
1lrv_A		244	LRV, leucine-rich repeat variant; leucine-rich rep	83.05

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

Probab=99.16  E-value=5.4e-07  Score=115.02  Aligned_cols=623  Identities=11%  Similarity=0.086  Sum_probs=323.1

Q ss_pred             hcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhh-hhccC-
Q 001247           65 LKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV-VMLDL-  142 (1115)
Q Consensus        65 L~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~v-l~~dl-  142 (1115)
                      |...++.||..+|-|++.|.+..-|+ -+     .+++..++..+.   ++ +  ......-+..+..+-.-. -..+- 
T Consensus        99 l~~~~~~vr~~~a~~i~~ia~~~~~~-~w-----p~ll~~L~~~l~---~~-~--~~~r~~al~~L~~i~~~~~~~~~~~  166 (852)
T 4fdd_A           99 IGDSSPLIRATVGILITTIASKGELQ-NW-----PDLLPKLCSLLD---SE-D--YNTCEGAFGALQKICEDSAEILDSD  166 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTTT-TC-----TTHHHHHHHHHS---CS-S--HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhcCcc-cc-----HHHHHHHHHHHc---CC-C--HHHHHHHHHHHHHHHHHhHHHhchh
Confidence            66788999999999999999986321 12     223333444332   21 2  222333333333211000 00000 


Q ss_pred             CchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc----ccHHHHHHHHHhhcCCCch---HHHHHHHHHHHH
Q 001247          143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED----IQEDLLVILLSALGRNKND---TARRLAMNVIEQ  215 (1115)
Q Consensus       143 ~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~----i~~~~ld~il~~~~~~~~~---~a~~la~~v~~~  215 (1115)
                      .....+..++..|+...++ ....|.......+..++.....    .-++++..++..+......   .|...-..++..
T Consensus       167 ~~~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~  245 (852)
T 4fdd_A          167 VLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV  245 (852)
T ss_dssp             SSSSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            0012244555556655543 3456777777777776643221    1124555555544332221   455555677777


Q ss_pred             hhhhhhHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHH------HhhCchhhhhhhhhhhcccc----------CC----
Q 001247          216 CAGKLEAGIKQFLVSSMSG-DSRPGHSHIDYHEVIYDV------YRCSPQILSGVVPYLTGELL----------TD----  274 (1115)
Q Consensus       216 ~~~~l~~~i~~~~~~~l~~-~~~~~~~~~~~h~li~el------~~~~P~lL~~Vip~Le~eL~----------se----  274 (1115)
                      +.+.+.+++.+.+.-++.. .+....-...+-+.+..+      ++..+..+..++|.+-..+.          .|    
T Consensus       246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            8888888877665543321 111111111223333333      23334455566666644431          21    


Q ss_pred             --------chHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 001247          275 --------QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL  344 (1115)
Q Consensus       275 --------~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~~~~~~l~  344 (1115)
                              +-.+|..|...+|.+....+.   ...|.+...+.....|.++.+|.+.+.+.+.|....+.  .....+++
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l  402 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI  402 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence                    124699999999998865442   23356666666667889999999999999987653321  11246789


Q ss_pred             HHHHHHcCCchhHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001247          345 TALCDRLLDFDENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI  420 (1115)
Q Consensus       345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~----l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~  420 (1115)
                      +.+...+.|++..||.+|+.+++.++...    ....-..++..+.+.+.|.++.||..|...|+.+-......      
T Consensus       403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~------  476 (852)
T 4fdd_A          403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE------  476 (852)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh------
Confidence            99999999999999999999999988632    22233467888999999999999999999999987654211      


Q ss_pred             chhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001247          421 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRY  500 (1115)
Q Consensus       421 ~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~  500 (1115)
                      ...-+..|=..++.+.-..                    . .+....++...+.+-+..-..    +.....+...+..+
T Consensus       477 l~~~l~~ll~~L~~~l~~~--------------------~-~~~~~~~~~ai~~l~~~~~~~----~~~~~~~~~l~p~l  531 (852)
T 4fdd_A          477 LVPYLAYILDTLVFAFSKY--------------------Q-HKNLLILYDAIGTLADSVGHH----LNKPEYIQMLMPPL  531 (852)
T ss_dssp             GGGGHHHHHHHHHHHHHHC--------------------C-HHHHHHHHHHHHHHHHHHGGG----GCCHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHh--------------------C-hHHHHHHHHHHHHHHHHhhhh----hccHHHHHHHHHHH
Confidence            1111222222222222100                    0 011111111111111000000    00112233444444


Q ss_pred             HHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhc--------c------CCCHH
Q 001247          501 LSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLD--------S------NTSFD  566 (1115)
Q Consensus       501 l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~--------~------~s~~~  566 (1115)
                      ++.+....+.+ ++.. .+-.++..++..+.+..  ...+..+.    +++.++++.++.        +      +.++.
T Consensus       532 ~~~~~~l~d~~-~~~~-~~~~~l~~i~~~~g~~~--~~~~~~i~----~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~  603 (852)
T 4fdd_A          532 IQKWNMLKDED-KDLF-PLLECLSSVATALQSGF--LPYCEPVY----QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  603 (852)
T ss_dssp             HHHHHHSCTTC-TTHH-HHHHHHHHHHHHHGGGG--HHHHHHHH----HHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             HHHHHhccccc-HHHH-HHHHHHHHHHHHHhHhH--HHHHHHHH----HHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence            44443333322 2332 34444555555443321  11222222    224444444321        1      11111


Q ss_pred             -HHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccc
Q 001247          567 -QAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG  645 (1115)
Q Consensus       567 -~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~  645 (1115)
                       .+-.....+.+.+|+.             ..+.+.+..-++.+++.+    .+.+......+..+|..++..+|.-|..
T Consensus       604 ~~~l~~l~~l~~~l~~~-------------~~~~~~~~~~~~~l~~~l----~~~~~~vr~~a~~~l~~l~~~~~~~~~~  666 (852)
T 4fdd_A          604 IVALDLLSGLAEGLGGN-------------IEQLVARSNILTLMYQCM----QDKMPEVRQSSFALLGDLTKACFQHVKP  666 (852)
T ss_dssp             HHHHHHHHHHHHHHGGG-------------GHHHHHTCCHHHHHHHHT----TCSSHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HHHHHHHHHHHHHHhHh-------------HHHHhcCCcHHHHHHHHh----CCCChhHHHHHHHHHHHHHHHhhHHHHH
Confidence             1122333444444422             111111223455555432    2222335567889999999999999999


Q ss_pred             cHHHHHHHHhh----ccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcC-Ch-HHHHHHHHHHHhhcCCCcc
Q 001247          646 TEEELVNLLKE----ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG-SR-RQAKYAVHALAAITKDDGL  719 (1115)
Q Consensus       646 ~~~~L~~~l~~----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~G-tp-~~AK~Av~~L~~~~~~~~~  719 (1115)
                      ++..++..+..    +++.+...++.++..++..+.+.+.+.-..+.+.|-+.-... .+ ..-.-|+.+|+.+......
T Consensus       667 ~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~  746 (852)
T 4fdd_A          667 CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ  746 (852)
T ss_dssp             GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHH
Confidence            98888766654    223344556666665554443334433345666665544432 22 4445566777666543211


Q ss_pred             ---chHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhccccccc
Q 001247          720 ---KSLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAMPVFET  759 (1115)
Q Consensus       720 ---~~~~~l~~~l~~~l~~~-~--~~~~~L~sLa~ia~~~p~~f~~  759 (1115)
                         ..++.++...+..|... +  .-.+....|..+.+..|.....
T Consensus       747 ~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~  792 (852)
T 4fdd_A          747 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ  792 (852)
T ss_dssp             HHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             HhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence               12455666666666422 1  2334556677777777765444

PyMOL of 4fdd

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}	Back alignment and structure

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}	Back alignment and structure

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1115
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	0.001
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1115
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.06
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.84
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.77
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.73
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.72
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.66
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.65
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.22
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.98
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.9
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.87
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.8
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.35
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.01
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.77
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	96.07
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	95.95
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.25
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.81
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.47
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.91
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.11
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	89.14
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	87.72
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	86.93
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	86.92
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	85.38
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	83.06
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	82.64

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.4e-06  Score=111.35  Aligned_cols=358  Identities=13%  Similarity=0.153  Sum_probs=216.8

Q ss_pred             HHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccC
Q 001247           32 QAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSG  111 (1115)
Q Consensus        32 ~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~  111 (1115)
                      .+.+-+..+.++....|.+..+.+...|.+  +|+.++.+||..+.-||..+..- .     ..+++..+...++..+. 
T Consensus        23 a~~dl~~~l~~~~~~~~~~~~~~i~~~ll~--~L~D~~~~Vq~~A~k~l~~l~~~-~-----~~~~~~~l~~~L~~~l~-   93 (1207)
T d1u6gc_          23 ATNDLMTELQKDSIKLDDDSERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSK-V-----KEYQVETIVDTLCTNML-   93 (1207)
T ss_dssp             HHHHHHHHTSSSCCSCCTTHHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTT-S-----CHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhhcccccChHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHh-C-----cHhhHHHHHHHHHHHhc-
Confidence            333333444444333344556667777755  77889999999999999988652 1     24567777777666553 


Q ss_pred             CCCCCCCChhhHHHHHHHHHhhhhhhhhccCC--------chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc
Q 001247          112 LKDTGGPSFGRRVVILETLAKYRSCVVMLDLE--------CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE  183 (1115)
Q Consensus       112 L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~--------~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~  183 (1115)
                        +.+...-.-....|.++        +..++        ...+...+...+.+.........+.....+++..++.-..
T Consensus        94 --~~~~~~r~~~~~~L~~i--------~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g  163 (1207)
T d1u6gc_          94 --SDKEQLRDISSIGLKTV--------IGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  163 (1207)
T ss_dssp             --CSSSHHHHHHHHHHHHH--------HHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             --CCchhhhHHHHHHHHHH--------HHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence              22221111111222221        11121        1345555555566655555556677778889999887765


Q ss_pred             ccc----HHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhh-----hhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHh
Q 001247          184 DIQ----EDLLVILLSALGRNKNDTARRLAMNVIEQCAGK-----LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYR  254 (1115)
Q Consensus       184 ~i~----~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~-----l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~  254 (1115)
                      ..-    .+++..++..+...+ ..-++-|...+...+..     +...+...+.....+.  .......+...+-.|.+
T Consensus       164 ~~l~~~~~~il~~l~~~l~~~~-~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~l~~l~~  240 (1207)
T d1u6gc_         164 GLLVNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND--SMSTTRTYIQCIAAISR  240 (1207)
T ss_dssp             SSCTTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC--SSCSCTTHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHH
Confidence            432    345555554553322 22233333333222222     2222333332222221  11122245677888888


Q ss_pred             hCchhh----hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHH----------------------
Q 001247          255 CSPQIL----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF----------------------  308 (1115)
Q Consensus       255 ~~P~lL----~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~f----------------------  308 (1115)
                      ..|..+    ..++|.+...+..++.++|..|.+.++.+...-+..+...++++....                      
T Consensus       241 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~  320 (1207)
T d1u6gc_         241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM  320 (1207)
T ss_dssp             HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred             HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhh
Confidence            877654    457888888999999999999999999988765433333333333332                      


Q ss_pred             ---------------HhcccCCChhHHHHHHHHhHHHHhcCCCCC--ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247          309 ---------------LKRLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDRLLDFDENVRKQVVAVICDVAC  371 (1115)
Q Consensus       309 ---------------L~R~~D~s~~VR~~~v~~~~~il~~~~~~~--~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~  371 (1115)
                                     ..-..|.+..||...++....++.+.|+..  ..+++.+.+..++.|.++.||.+++.++..+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         321 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence                           233467888999999999999888777521  123567889999999999999999999988764


Q ss_pred             hhcCCC----------------------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247          372 HALNSI----------------------PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC  411 (1115)
Q Consensus       372 ~~l~~v----------------------~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~  411 (1115)
                      ......                      -..++..+...++|+...+|..|+..++.+....
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~  462 (1207)
T d1u6gc_         401 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  462 (1207)
T ss_dssp             HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             hccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHc
Confidence            322111                      1235678888999999999999999999987764

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure