Citrus Sinensis ID: 001250

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110----

MDNYPYNNNNPYPYNGYQPPPPIYGQPPPPGGADPYHQSPYPYGGGPAYPYQPSACPPPQATQPSHSLPLDYQYQLHSHSGPLLYPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPYAQAQSSQDHYPFPETTAQLPSGVSTFLDRLGKDRLSSGRVFSSAQPANARDDNLSGQDSFVQDKLSSGRVFSRPHHENVVDNDLSGSDQRVQDRLDSVRVFSSSHSENVRDNSPAYPPLYPSLEEHLGNLHLSSNNNENNYQPSAPAVPPAPSVPSLLDSPLTPQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEEEEEEEEEEEEcccccccHHHHHHccccccccccccccccEEEEEEcccEEEEEEcccccccccEEEEEEEEccccccEEEEEEEEccccccEEEEEEEEEccccccccEEccEEEEccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEccHHHHHHHHHHHHcccEEEEEEEEcccccEEccccccccccHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccHHHHHHHcccccEEEccccccccccccccccccEEEEccccEEEEEEcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHccccccccccHHcHHHHHHHHHHHHcccEEEEEcEEEccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccEEEEEcccEEEEccccccccccccccccccccEEEEEcccccHHHcccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccEEcccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHEEEEcccEEEEEEEcccccccHHHHHHHHHHHHcccccccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEHHHHcccccccccEEEccccccccccccEEEEEEEEEEccccccHccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccEEEEEccEEccEEEEEEcccccccccHHHHHHHHHHcccEEEEEEEccccccccccEccccccccccHHHHHHHccccEEEEEccccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEcccEcccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccEEEEEcEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEEEEEEccccEEEEcccEEEccccccccccccccccccccHEEEEEccccccHccccccccccEHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHccHHHcccccEEEEEEEEcccccEccccccccccccccEEEcccccccccccc

mdnypynnnnpypyngyqppppiygqppppggadpyhqspypygggpaypyqpsacpppqatqpshslpldyqyqlhshsgpllypyehpapvsssmpqtpqhsssfeyfphpypyaqaqssqdhypfpettaqlpsgVSTFLDrlgkdrlssgrvfssaqpanarddnlsgqdsfvqdklssgrvfsrphhenvvdndlsgsdqrvqDRLDSVRVfssshsenvrdnspaypplypsleehlgnlhlssnnnennyqpsapavppapsvpslldspltpqgstlsspggfygypndsfssyperaylgmidssnhlvyahsdsfngqnmqivpstkGSLKVLLLHGNLDIWIysaknlpnmdmFHKTLGGmfnsqmntkitsdpyVTIAVAGAVVGRTfvisnsedpvwqqhfyvpvahsaaeVHFFVKdsdvvgseligtvaipveqiysggkvegtypvlngsgkpckpgatltlsiqytpmerlsfyhrgvgegpdyngvpgtyfplrkggkvtlyqdahvpdgclphlgldrgmsyvhgkCWYDICNAISQAQRLIYITGWSVWHKVKlvrdaspaldcTLGELLRSKSQEGVRVLLLVwddptsrsilgykmdgvmqthdeetRRVFKHSSVKvllcpriagkrhswakqkevgtiytHHQKTVIvdadagynrRKIIAFVGgldlcdgrydnphhplfrtlqtlhkddyhnptftgnttgcprepwhdlhskidgpaaYDVLTNFEERWrkaskphgikklksgdDALLRIeripgiigisdapsvrendaeSWHVQIFRsidstsvrgfpkdpkeatsknlvcgknVLIDMSIHTAYVKAIRSAQHFIYIENqyfigssynwssyrdlgannliPMEIALKIADKIRAHERFAAYIvipmwpegvptgaATQRILFWQHKTMQMMYETIYKALVEVglegafspqdylnffclgnrevidqtdtslsgnptapntpersmegtrdteiamgayqpeytwarmkrhpygqiyGYRMSLWAEHLGyiedcfgqpetLECVRKVRSVGENNWQQFAADDQSEMRSHLIkypvevdrkgkvrpipgyetfpdvggniVGSFFAIQENLTI

mdnypynnNNPYPYNGYQPPPPIYGQPPPPGGADPYHQSPYPYGGGPAYPYQPSACPPPQATQPSHSLPLDYQYQLHSHSGPLLYPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPYAQAQSSQDHYPFPETTAQLPSGVSTFLDRLGKDRLSSgrvfssaqpanarddnlsgqDSFVQDKLSsgrvfsrphhenvvdndlsgsdqrVQDRLDSVRVfssshsenvrdnspAYPPLYPSLEEHLGNLHLSSNNNENNYQPSAPAVPPAPSVPSLLDSPLTPQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEllrsksqegVRVLLlvwddptsrsiLGYKMDGVMQTHDEetrrvfkhssvkvllcpriagkrhswakqkevgtiythhqktvivdadagyNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERwrkaskphgikklksgddaLLRIERIPgiigisdapsvRENDAESWHVQIFrsidstsvrgfpkdpkeatsknlvcgkNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIdqtdtslsgnptapntpersmegtrDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQfaaddqsemrSHLIKypvevdrkgkvrpipgyetfpdvggniVGSFFAIQENLTI

MDnypynnnnpypyngyqppppiygqppppggADPYHqspypygggpaypyqpsaCPPPQATQPSHSLPLDYQYQLHSHSGPLLYPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPYAQAQSSQDHYPFPETTAQLPSGVSTFLDRLGKDRLSSGRVFSSAQPANARDDNLSGQDSFVQDKLSSGRVFSRPHHENVVDNDLSGSDQRVQDRLDSVRVFSSSHSENVRDNSPAYPPLYPSLEehlgnlhlssnnnennYQpsapavppapsvpslldsplTPQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI

**************************************************************************************************************************************************************************************************************************************************************************************************FYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA*****IKKLKSGDDALLRIERIPGIIGISDAPSVR*NDAESWHVQIFRSID****************KNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVI****************************IAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAA*******SHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQ*****

******************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNG*********TLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVP*GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNP***********GTRDTEIAMGAYQPEYTW****RHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI

MDNYPYNNNNPYPYNGYQPPPPIYGQPPPPGGADPYHQSPYPYGGGPAYPYQPSA**********HSLPLDYQYQLHSHSGPLLYPYEHPA*************SSFEYFPHPYPYAQAQSSQDHYPFPETTAQLPSGVSTFLDRLGKDRLSSGRVFSSAQPANARDDNLSGQDSFVQDKLSSGRVFSRPHHENVVDNDLSGSDQRVQDRLDSVRV***********NSPAYPPLYPSLEEHLGNLHLSSNNNENNYQPSAPAVPPAPSVPSLLDSPLTPQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDT******************TRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI

*DNYPYNNNNPYPYNGYQPPPPIYGQPPPPGGADPYHQSPYPYGGGPAYPYQPSACPPPQATQPSHSLPLDYQYQLHSHSGPLLYPYEHPAPVSSS*P********FEYFPHPYPYAQAQSSQDHYPFPETT**************************S***********************************************************************AYPPLYPSLEEHLGNLHL****************************************GGFY**********************************GQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAP******MEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQE*LT*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1114	2.2.26 [Sep-21-2011]
P93733		1083	Phospholipase D beta 1 OS	yes	no	0.792	0.815	0.720	0.0
O23078		927	Phospholipase D beta 2 OS	no	no	0.732	0.880	0.722	0.0
Q9T053		858	Phospholipase D gamma 1 O	no	no	0.702	0.912	0.667	0.0
Q9T052		866	Phospholipase D gamma 3 O	no	no	0.703	0.905	0.650	0.0
Q9T051		856	Phospholipase D gamma 2 O	no	no	0.704	0.917	0.635	0.0
Q9C5Y0		868	Phospholipase D delta OS=	no	no	0.696	0.894	0.505	0.0
Q43270		812	Phospholipase D alpha 1 O	N/A	no	0.666	0.915	0.441	0.0
O82549		810	Phospholipase D alpha 1 O	N/A	no	0.666	0.917	0.428	0.0
Q41142		808	Phospholipase D alpha 1 O	N/A	no	0.666	0.918	0.427	0.0
P93400		808	Phospholipase D alpha 1 O	N/A	no	0.662	0.913	0.425	0.0

>sp\|P93733\|PLDB1_ARATH Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4	Back alignment and function desciption

 Score = 1397 bits (3616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/948 (72%), Positives = 770/948 (81%), Gaps = 65/948 (6%)

Query: 210  RLDSVRVFSSSHSENVRDNSPAYPPLYPSLEEHLGNLHLSSNNNENNYQPSAPAVPPAPS 269
            R D +    + H +NV ++  +YPP+    +E LG LH+S+N              P PS
Sbjct: 158  RQDCLSTGGTGH-DNVSNSGSSYPPV----DELLGGLHISTNQ-------------PGPS 199

Query: 270  VPSLLDSPLTPQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQN 329
            VP L      P  S  S PG  YGYPN SF S      LG +DSS+   YA ++S +  +
Sbjct: 200  VPQLSS---LPSNSWQSRPGDLYGYPNSSFPSNSHLPQLGRVDSSSSY-YASTESPHSAD 255

Query: 330  MQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF-------NSQMNTKIT 382
            MQ+    KGSLKVLLLHGNLDIWIY AKNLPNMDMFHKTLG MF         Q+ +KIT
Sbjct: 256  MQMTLFGKGSLKVLLLHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRLPGKIEGQLTSKIT 315

Query: 383  SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGT 442
            SDPYV+++VAGAV+GRT+V+SNSE+PVW QHFYVPVAH AAEVHF VKDSDVVGS+LIG 
Sbjct: 316  SDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGL 375

Query: 443  VAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYN 502
            V IPVEQIYSG K+EGTYP+LN +GKPCKPGA L+LSIQYTPM++LS YH GVG GPDY 
Sbjct: 376  VTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYHHGVGAGPDYQ 435

Query: 503  GVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIY 562
            GVPGTYFPLRKGG V LYQDAHVP+G LP + LD GMSY HGKCW+D+ +AI QA+RLIY
Sbjct: 436  GVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFDAIRQARRLIY 495

Query: 563  ITGWSVWHKVKLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGV 621
            ITGWSVWHKVKL+RD   PA +CTLGELLRSKSQEGVRVLLL+WDDPTSRSILGYK DGV
Sbjct: 496  ITGWSVWHKVKLIRDKLGPASECTLGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGV 555

Query: 622  MQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRR 681
            M THDEETRR FKHSSV+VLLCPR AGKRHSW KQ+EVGTIYTHHQK VIVDADAG NRR
Sbjct: 556  MATHDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNVIVDADAGGNRR 615

Query: 682  KIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID 741
            KIIAFVGGLDLCDGRYD P HPLFRTLQT+HKDD+HNPTFTGN +GCPREPWHDLHSKID
Sbjct: 616  KIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGCPREPWHDLHSKID 675

Query: 742  GPAAYDVLTNFEERWRKASKPHGIKKLKSG-DDALLRIERIPGIIGISDAPSVRENDAES 800
            GPAAYDVLTNFEERW KA+KP GIKK K+  DDALLRI+RIP I+G+SD P+V END E+
Sbjct: 676  GPAAYDVLTNFEERWLKAAKPSGIKKFKTSYDDALLRIDRIPDILGVSDTPTVSENDPEA 735

Query: 801  WHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIEN 860
            WHVQIFRSIDS SV+GFPKDPK+AT KNLVCGKNVLIDMSIHTAYVKAIR+AQHFIYIEN
Sbjct: 736  WHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIEN 795

Query: 861  QYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQ 920
            QYFIGSSYNW++++D+GANNLIPMEIALKIA+KIRA+ERFAAYIVIPMWPEGVPTGAATQ
Sbjct: 796  QYFIGSSYNWNAHKDIGANNLIPMEIALKIAEKIRANERFAAYIVIPMWPEGVPTGAATQ 855

Query: 921  RILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTA 980
            RIL+WQHKT+QMMYETIYKALVE GLEGAFSPQDYLNFFCLGNRE++D  D S +G+P+ 
Sbjct: 856  RILYWQHKTIQMMYETIYKALVETGLEGAFSPQDYLNFFCLGNREMVDGIDNSGTGSPSN 915

Query: 981  PNTP----------------------------------ERSMEGTRDTEIAMGAYQPEYT 1006
             NTP                                  +RSMEGTRDTEIAMGAYQP++T
Sbjct: 916  ANTPQALSRKSRRFMVYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTEIAMGAYQPQHT 975

Query: 1007 WARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQS 1066
            WAR    P GQIYGYRMSLWAEH+  ++DCF QPE++ECVRKVR++GE NW+QFAA++ S
Sbjct: 976  WARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFAAEEVS 1035

Query: 1067 EMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI 1114
            +MR HL+KYPVEVDRKGKVRP+PG ETFPDVGGNIVGSF AIQENLTI
Sbjct: 1036 DMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENLTI 1083

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4

>sp\|O23078\|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3	Back alignment and function description

>sp\|Q9T053\|PLDG1_ARATH Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1	Back alignment and function description

>sp\|Q9T052\|PLDG3_ARATH Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1	Back alignment and function description

>sp\|Q9T051\|PLDG2_ARATH Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3	Back alignment and function description

>sp\|Q9C5Y0\|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2	Back alignment and function description

>sp\|Q43270\|PLDA1_MAIZE Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1	Back alignment and function description

>sp\|O82549\|PLDA1_BRAOC Phospholipase D alpha 1 OS=Brassica oleracea var. capitata GN=PLD1 PE=2 SV=1	Back alignment and function description

>sp\|Q41142\|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1	Back alignment and function description

>sp\|P93400\|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1114
255541418		1114	phospholipase d beta, putative [Ricinus	0.781	0.781	0.757	0.0
297827869		1087	phospholipase D beta 1 [Arabidopsis lyra	0.794	0.814	0.719	0.0
30688872		1083	phospholipase D [Arabidopsis thaliana] g	0.792	0.815	0.720	0.0
312283197		1048	unnamed protein product [Thellungiella h	0.766	0.814	0.726	0.0
20198318		828	phospholipase D [Arabidopsis thaliana]	0.704	0.948	0.774	0.0
224063951		1100	predicted protein [Populus trichocarpa]	0.890	0.901	0.646	0.0
225453861		1087	PREDICTED: phospholipase D beta 1 [Vitis	0.780	0.800	0.715	0.0
449454618		1095	PREDICTED: phospholipase D beta 1-like [	0.807	0.821	0.703	0.0
357507045		1114	Phospholipase D [Medicago truncatula] gi	0.782	0.782	0.711	0.0
22795062		1162	phospholipase D beta 1 isoform 1b [Gossy	0.911	0.873	0.610	0.0

>gi\|255541418\|ref\|XP_002511773.1\| phospholipase d beta, putative [Ricinus communis] gi\|223548953\|gb\|EEF50442.1\| phospholipase d beta, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1428 bits (3696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/942 (75%), Positives = 782/942 (83%), Gaps = 71/942 (7%)

Query: 228  NSPAYPPLYPSLEEHLGNLHLSSNNNENNYQPSAPAVPPAPSVPSLLDSPLTPQGSTLSS 287
            +S AYPPL    ++ + N+ L    NE+N  PSAPA PPAPSV S  DSP++ Q S+   
Sbjct: 189  SSSAYPPL----DDLMSNMSL----NESNNHPSAPASPPAPSVTSAPDSPVSYQSSSFGH 240

Query: 288  PGGFYGYPNDSFSSYPERAYLGMIDSSNHL---VYAHSDSFN----GQNMQIVP--STKG 338
               FYGYPN S       AY G +DSS      +Y HS SF+     Q+ QIVP  +TKG
Sbjct: 241  DRDFYGYPNTS------GAYFGRVDSSGQYSAPLYTHSGSFSDSQHSQSTQIVPWQNTKG 294

Query: 339  SLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFN-----------SQMNTKITSDPYV 387
            SL+VLLLHGNLDI+IY AKNLPNMDMFHKTLG MFN            QM+ KITSDPYV
Sbjct: 295  SLRVLLLHGNLDIYIYEAKNLPNMDMFHKTLGDMFNRLPGNIGSKIEGQMSRKITSDPYV 354

Query: 388  TIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPV 447
            +I+V GAV+GRTFVISNSEDPVW QHFYVPVAH+AAEVHF VKDSDVVGS+LIG VAIPV
Sbjct: 355  SISVVGAVIGRTFVISNSEDPVWMQHFYVPVAHNAAEVHFLVKDSDVVGSQLIGVVAIPV 414

Query: 448  EQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGT 507
            EQIYSG +VEG YP+LN +GKPCKPGATL +SIQYTPME+LS YH+GVG GPDY GVPGT
Sbjct: 415  EQIYSGARVEGVYPILNSNGKPCKPGATLKISIQYTPMEKLSIYHQGVGAGPDYYGVPGT 474

Query: 508  YFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWS 567
            YFPLRKGG VTLYQDAHVPDGCLP+L LD G+SYVHGKCW+DI +AI  A+RLIYITGWS
Sbjct: 475  YFPLRKGGTVTLYQDAHVPDGCLPNLKLDHGLSYVHGKCWHDIFDAIRHARRLIYITGWS 534

Query: 568  VWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627
            VWHKV+L+RDA P  D TLG+LLRSKSQEGVRVLLL+WDDPTSRSILGY+ DG+M THDE
Sbjct: 535  VWHKVRLIRDADP--DVTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYRTDGIMATHDE 592

Query: 628  ETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFV 687
            ETRR FKHSSV+VLLCPRIAGKRHSW KQ+EVGTIYTHHQKTVIVDADAG NRRKI+AFV
Sbjct: 593  ETRRFFKHSSVQVLLCPRIAGKRHSWVKQREVGTIYTHHQKTVIVDADAGNNRRKIVAFV 652

Query: 688  GGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYD 747
            GGLDLCDGRYD PHHPLFRTLQT+HKDDYHNPTFTGN TGCPREPWHDLHSKIDGPAAYD
Sbjct: 653  GGLDLCDGRYDAPHHPLFRTLQTVHKDDYHNPTFTGNVTGCPREPWHDLHSKIDGPAAYD 712

Query: 748  VLTNFEERWRKASKPHGIKKLK-SGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIF 806
            VLTNFEERW KA++P GIKKLK S DDALLRIERIP I+G+ DAPSV END E WHVQIF
Sbjct: 713  VLTNFEERWFKAARPQGIKKLKMSYDDALLRIERIPDILGVFDAPSVGENDPEGWHVQIF 772

Query: 807  RSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGS 866
            RSIDS SV+GFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIR+AQHFIYIENQYFIGS
Sbjct: 773  RSIDSNSVKGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGS 832

Query: 867  SYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQ 926
            SYNWSSY+DLGANNLIPMEIALKIADKIRA+ERFAAYIVIPMWPEGVPTGAATQRILFWQ
Sbjct: 833  SYNWSSYKDLGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTGAATQRILFWQ 892

Query: 927  HKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTP-- 984
            HKTMQMMYETIYKALVEVGLE AFSPQDYLNFFCLGNRE  D  DTS   +PTA N P  
Sbjct: 893  HKTMQMMYETIYKALVEVGLENAFSPQDYLNFFCLGNREFTDTCDTSAVSSPTAANNPQA 952

Query: 985  --------------------------------ERSMEGTRDTEIAMGAYQPEYTWARMKR 1012
                                            +RSMEGTRDTEIAMGAYQP +TWAR + 
Sbjct: 953  LSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHHTWARKQS 1012

Query: 1013 HPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHL 1072
            +PYGQI+GYRMSLWAEH+G IE CF QPE+LECVR++R++GE NW+QFAAD+ +EM+ HL
Sbjct: 1013 NPYGQIHGYRMSLWAEHVGGIEGCFTQPESLECVRRIRTLGEMNWKQFAADEITEMKGHL 1072

Query: 1073 IKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFFAIQENLTI 1114
            +KYPVEVDRKGKVRPIPG ETFPDVGGNIVGSF AIQENLTI
Sbjct: 1073 LKYPVEVDRKGKVRPIPGCETFPDVGGNIVGSFLAIQENLTI 1114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297827869\|ref\|XP_002881817.1\| phospholipase D beta 1 [Arabidopsis lyrata subsp. lyrata] gi\|297327656\|gb\|EFH58076.1\| phospholipase D beta 1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30688872\|ref\|NP_565963.2\| phospholipase D [Arabidopsis thaliana] gi\|374095514\|sp\|P93733.4\|PLDB1_ARATH RecName: Full=Phospholipase D beta 1; Short=AtPLDbeta1; Short=PLD beta 1; Short=PLDbeta gi\|330254969\|gb\|AEC10063.1\| phospholipase D [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|312283197\|dbj\|BAJ34464.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|20198318\|gb\|AAB63542.2\| phospholipase D [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224063951\|ref\|XP_002301317.1\| predicted protein [Populus trichocarpa] gi\|222843043\|gb\|EEE80590.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225453861\|ref\|XP_002272857.1\| PREDICTED: phospholipase D beta 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454618\|ref\|XP_004145051.1\| PREDICTED: phospholipase D beta 1-like [Cucumis sativus] gi\|449473835\|ref\|XP_004153996.1\| PREDICTED: phospholipase D beta 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357507045\|ref\|XP_003623811.1\| Phospholipase D [Medicago truncatula] gi\|355498826\|gb\|AES80029.1\| Phospholipase D [Medicago truncatula]	Back alignment and taxonomy information

>gi\|22795062\|gb\|AAN05431.1\| phospholipase D beta 1 isoform 1b [Gossypium hirsutum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1114
TAIR\|locus:2064607		1083	PLDBETA1 "phospholipase D beta	0.632	0.650	0.784	0.0
TAIR\|locus:2126001		927	PLDBETA2 "phospholipase D beta	0.616	0.741	0.754	0.0
TAIR\|locus:2137045		858	PLDGAMMA1 "phospholipase D gam	0.592	0.769	0.708	3.20000000008e-314
TAIR\|locus:2137035		866	PLDGAMMA3 "phospholipase D gam	0.594	0.764	0.685	6.4e-307
TAIR\|locus:2137025		856	PLDGAMMA2 "phospholipase D gam	0.571	0.744	0.689	7.3e-297
TAIR\|locus:2125314		868	PLDDELTA "phospholipase D delt	0.341	0.437	0.550	1.2e-230
UNIPROTKB\|P86387		808	PLD1 "Phospholipase D alpha 1"	0.568	0.783	0.442	2.8e-174
TAIR\|locus:2093227		810	PLDALPHA1 "phospholipase D alp	0.568	0.781	0.440	1.6e-173
TAIR\|locus:2035211		810	PLDALPHA2 "phospholipase D alp	0.568	0.781	0.448	3.3e-171
TAIR\|locus:2145452		820	PLDALPHA3 "phospholipase D alp	0.541	0.735	0.447	4.6e-163

TAIR\|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3029 (1071.3 bits), Expect = 0., Sum P(4) = 0.
 Identities = 561/715 (78%), Positives = 623/715 (87%)

Query:   280 PQGSTLSSPGGFYGYPNDSFSSYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPSTKGS 339
             P  S  S PG  YGYPN SF S      LG +DSS+   YA ++S +  +MQ+    KGS
Sbjct:   207 PSNSWQSRPGDLYGYPNSSFPSNSHLPQLGRVDSSSSY-YASTESPHSADMQMTLFGKGS 265

Query:   340 LKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFN-------SQMNTKITSDPYVTIAVA 392
             LKVLLLHGNLDIWIY AKNLPNMDMFHKTLG MF         Q+ +KITSDPYV+++VA
Sbjct:   266 LKVLLLHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRLPGKIEGQLTSKITSDPYVSVSVA 325

Query:   393 GAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYS 452
             GAV+GRT+V+SNSE+PVW QHFYVPVAH AAEVHF VKDSDVVGS+LIG V IPVEQIYS
Sbjct:   326 GAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYS 385

Query:   453 GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLR 512
             G K+EGTYP+LN +GKPCKPGA L+LSIQYTPM++LS YH GVG GPDY GVPGTYFPLR
Sbjct:   386 GAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYHHGVGAGPDYQGVPGTYFPLR 445

Query:   513 KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKV 572
             KGG V LYQDAHVP+G LP + LD GMSY HGKCW+D+ +AI QA+RLIYITGWSVWHKV
Sbjct:   446 KGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFDAIRQARRLIYITGWSVWHKV 505

Query:   573 KLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRR 631
             KL+RD   PA +CTLGELLRSKSQEGVRVLLL+WDDPTSRSILGYK DGVM THDEETRR
Sbjct:   506 KLIRDKLGPASECTLGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRR 565

Query:   632 VFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLD 691
              FKHSSV+VLLCPR AGKRHSW KQ+EVGTIYTHHQK VIVDADAG NRRKIIAFVGGLD
Sbjct:   566 FFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNVIVDADAGGNRRKIIAFVGGLD 625

Query:   692 LCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTN 751
             LCDGRYD P HPLFRTLQT+HKDD+HNPTFTGN +GCPREPWHDLHSKIDGPAAYDVLTN
Sbjct:   626 LCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGCPREPWHDLHSKIDGPAAYDVLTN 685

Query:   752 FEERWRKASKPHGIKKLKSG-DDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSID 810
             FEERW KA+KP GIKK K+  DDALLRI+RIP I+G+SD P+V END E+WHVQIFRSID
Sbjct:   686 FEERWLKAAKPSGIKKFKTSYDDALLRIDRIPDILGVSDTPTVSENDPEAWHVQIFRSID 745

Query:   811 STSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNW 870
             S SV+GFPKDPK+AT KNLVCGKNVLIDMSIHTAYVKAIR+AQHFIYIENQYFIGSSYNW
Sbjct:   746 SNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNW 805

Query:   871 SSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTM 930
             ++++D+GANNLIPMEIALKIA+KIRA+ERFAAYIVIPMWPEGVPTGAATQRIL+WQHKT+
Sbjct:   806 NAHKDIGANNLIPMEIALKIAEKIRANERFAAYIVIPMWPEGVPTGAATQRILYWQHKTI 865

Query:   931 QMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPE 985
             QMMYETIYKALVE GLEGAFSPQDYLNFFCLGNRE++D  D S +G+P+  NTP+
Sbjct:   866 QMMYETIYKALVETGLEGAFSPQDYLNFFCLGNREMVDGIDNSGTGSPSNANTPQ 920

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA

TAIR\|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)]	Back alignment and assigned GO terms

TAIR\|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93733	PLDB1_ARATH	3, ., 1, ., 4, ., 4	0.7204	0.7926	0.8153	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4.4	0.946
3rd Layer	3.1.4	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_403049.1	annotation not avaliable (1087 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1114
PLN03008		868	PLN03008, PLN03008, Phospholipase D delta	0.0
PLN02270		808	PLN02270, PLN02270, phospholipase D alpha	0.0
PLN02352		758	PLN02352, PLN02352, phospholipase D epsilon	1e-173
cd09198		180	cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat	1e-103
cd09200		211	cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat	2e-98
cd09142		208	cd09142, PLDc_pPLD_like_2, Catalytic domain, repea	7e-87
cd09139		176	cd09139, PLDc_pPLD_like_1, Catalytic domain, repea	5e-85
cd04015		158	cd04015, C2_plant_PLD, C2 domain present in plant	6e-64
cd09197		178	cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea	1e-61
cd09199		211	cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea	4e-55
pfam12357		74	pfam12357, PLD_C, Phospholipase D C terminal	1e-36
cd09141		183	cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai	1e-28
cd09138		146	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai	5e-26
cd09104		147	cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re	7e-26
cd09105		146	cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re	2e-20
PLN02866		1068	PLN02866, PLN02866, phospholipase D	3e-20
smart00239		101	smart00239, C2, Protein kinase C conserved region	9e-19
cd00030		102	cd00030, C2, C2 domain	5e-17
pfam00168		85	pfam00168, C2, C2 domain	9e-16
PLN02866		1068	PLN02866, PLN02866, phospholipase D	1e-15
cd09140		146	cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain	8e-15
cd09842		151	cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1,	2e-14
cd09844		182	cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2,	7e-14
cd09843		145	cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1,	2e-13
cd04045		120	cd04045, C2C_Tricalbin-like, C2 domain third repea	4e-12
COG1502		438	COG1502, Cls, Phosphatidylserine/phosphatidylglyce	2e-10
cd08373		127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	3e-10
cd09845		182	cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2,	6e-10
cd08391		121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	8e-10
cd04044		124	cd04044, C2A_Tricalbin-like, C2 domain first repea	4e-09
cd04040		115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-09
cd04024		128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	7e-09
cd00275		128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-08
COG5038		1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-07
cd04036		119	cd04036, C2_cPLA2, C2 domain present in cytosolic	4e-07
cd04047		110	cd04047, C2B_Copine, C2 domain second repeat in Co	6e-06
cd09143		142	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain	9e-06
cd09110		154	cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o	2e-05
cd04009		133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-05
cd08383		117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	2e-05
cd04050		105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-05
pfam07223		357	pfam07223, DUF1421, Protein of unknown function (D	7e-05
cd04054		121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	1e-04
COG5038		1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-04
pfam04652		315	pfam04652, DUF605, Vta1 like	2e-04
pfam00614		28	pfam00614, PLDc, Phospholipase D Active site motif	2e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
cd04051		125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-04
COG5038		1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	4e-04
pfam14179		110	pfam14179, YppG, YppG-like protein	5e-04
cd04018		151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	5e-04
pfam12868		135	pfam12868, DUF3824, Domain of unknwon function (DU	5e-04
pfam09770		804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-04
pfam14179		110	pfam14179, YppG, YppG-like protein	8e-04
cd09155		156	cd09155, PLDc_PaCLS_like_1, Putative catalytic dom	0.001
cd04014		132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.001
cd08401		121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.002
cd04027		127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	0.002
cd04041		111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.002
cd04042		121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	0.002
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
cd00276		134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.004

>gnl\|CDD\|178585 PLN03008, PLN03008, Phospholipase D delta	Back alignment and domain information

 Score =  845 bits (2184), Expect = 0.0
 Identities = 443/869 (50%), Positives = 554/869 (63%), Gaps = 93/869 (10%)

Query: 335  STKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMF--------------------- 373
            + K S  V+LLHG+LD+ I  A+ LPNMDMF + L  +F                     
Sbjct: 2    AEKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKG 61

Query: 374  -----NSQMNTK-ITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427
                 N + + K ITSDPYVT+ V  A + RT V+ NS++P+W + F + +AH  A + F
Sbjct: 62   EFGDKNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEF 121

Query: 428  FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487
             VKD DV G+++IGT  IPV  I SG ++ G +PVL  SGKP K    + + +++TP ++
Sbjct: 122  QVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181

Query: 488  LSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCW 547
            +  Y  G+   P+  GV  TYFP+RKG +V LYQDAHV DG LP +GLD G  Y HGKCW
Sbjct: 182  IHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCW 241

Query: 548  YDICNAISQAQRLIYITGWSVWHKVKLVRDASPAL--DCTLGELLRSKSQEGVRVLLLVW 605
             DIC AIS+A  +IYI GWS++HK+KLVR+       D TLGELL+ KSQEGVRVLLLVW
Sbjct: 242  EDICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVW 301

Query: 606  DDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKE------- 658
            DD TS    G K  GVM THDEETR+ FKHSSV  +L PR A  +    KQ+        
Sbjct: 302  DDKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIY 361

Query: 659  ----VGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKD 714
                VGT++THHQK V+VD  A  N RK+ AF+GGLDLCDGRYD P H +   L T+ KD
Sbjct: 362  VMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKD 421

Query: 715  DYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSG--- 771
            D+HNPTF   T   PR+PWHDLH +IDGPAAYDVL NFE+RWRKA++         G   
Sbjct: 422  DFHNPTFPAGTKA-PRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTH 480

Query: 772  --DDALLRIERIPGII---------GIS----DAPSV---RENDAESWHVQIFRSIDSTS 813
              DDAL+RI RI  I+         G S    D P V   +E+D E+WHVQIFRSIDS S
Sbjct: 481  WQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGS 540

Query: 814  VRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY 873
            V+GFPK   EA +++L C K +++D SI TAY++ IRSAQHFIYIENQYF+GSSY W SY
Sbjct: 541  VKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY 600

Query: 874  RDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMM 933
            RD GA+NLIPME+ALKI  KIRA ERFA Y+VIP+WPEG P     Q IL+WQ +TMQMM
Sbjct: 601  RDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMM 660

Query: 934  YETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPT-------------- 979
            Y+ I K L  V  +    P DYLNF+CLG RE +     + +G+                
Sbjct: 661  YDVIAKELKAV--QSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVH 718

Query: 980  --------------APNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSL 1025
                          + N  +RSM GT+DTEIAMGAYQP +TWA   RHP GQ+YGYRMSL
Sbjct: 719  AKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSL 778

Query: 1026 WAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKV 1085
            WAEHLG   D F +P  LEC++KV ++ E NW++F     SE++ HLIKYP++VD  GKV
Sbjct: 779  WAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKV 838

Query: 1086 RPIPGYETFPDVGGNIVGSF-FAIQENLT 1113
             P+P YETFPDVGG I+G+   A+ + LT
Sbjct: 839  SPLPDYETFPDVGGKIIGAHSMALPDTLT 867

Length = 868

>gnl\|CDD\|165912 PLN02270, PLN02270, phospholipase D alpha	Back alignment and domain information

>gnl\|CDD\|215202 PLN02352, PLN02352, phospholipase D epsilon	Back alignment and domain information

>gnl\|CDD\|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins	Back alignment and domain information

>gnl\|CDD\|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins	Back alignment and domain information

>gnl\|CDD\|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>gnl\|CDD\|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|193000 pfam12357, PLD_C, Phospholipase D C terminal	Back alignment and domain information

>gnl\|CDD\|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	Back alignment and domain information

>gnl\|CDD\|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	Back alignment and domain information

>gnl\|CDD\|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins	Back alignment and domain information

>gnl\|CDD\|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins	Back alignment and domain information

>gnl\|CDD\|215467 PLN02866, PLN02866, phospholipase D	Back alignment and domain information

>gnl\|CDD\|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)	Back alignment and domain information

>gnl\|CDD\|175973 cd00030, C2, C2 domain	Back alignment and domain information

>gnl\|CDD\|215765 pfam00168, C2, C2 domain	Back alignment and domain information

>gnl\|CDD\|215467 PLN02866, PLN02866, phospholipase D	Back alignment and domain information

>gnl\|CDD\|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	Back alignment and domain information

>gnl\|CDD\|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1	Back alignment and domain information

>gnl\|CDD\|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1	Back alignment and domain information

>gnl\|CDD\|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2	Back alignment and domain information

>gnl\|CDD\|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin	Back alignment and domain information

>gnl\|CDD\|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2	Back alignment and domain information

>gnl\|CDD\|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>gnl\|CDD\|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)	Back alignment and domain information

>gnl\|CDD\|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine	Back alignment and domain information

>gnl\|CDD\|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	Back alignment and domain information

>gnl\|CDD\|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins	Back alignment and domain information

>gnl\|CDD\|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>gnl\|CDD\|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>gnl\|CDD\|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)	Back alignment and domain information

>gnl\|CDD\|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4	Back alignment and domain information

>gnl\|CDD\|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|216022 pfam00614, PLDc, Phospholipase D Active site motif	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins	Back alignment and domain information

>gnl\|CDD\|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|222579 pfam14179, YppG, YppG-like protein	Back alignment and domain information

>gnl\|CDD\|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin	Back alignment and domain information

>gnl\|CDD\|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)	Back alignment and domain information

>gnl\|CDD\|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1	Back alignment and domain information

>gnl\|CDD\|222579 pfam14179, YppG, YppG-like protein	Back alignment and domain information

>gnl\|CDD\|197252 cd09155, PLDc_PaCLS_like_1, Putative catalytic domain, repeat 1, of Pseudomonas aeruginosa cardiolipin synthase and similar proteins	Back alignment and domain information

>gnl\|CDD\|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon	Back alignment and domain information

>gnl\|CDD\|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3	Back alignment and domain information

>gnl\|CDD\|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>gnl\|CDD\|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group	Back alignment and domain information

>gnl\|CDD\|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1114
PLN03008		868	Phospholipase D delta	100.0
PLN02270		808	phospholipase D alpha	100.0
PLN02352		758	phospholipase D epsilon	100.0
KOG1329		887	consensus Phospholipase D1 [Lipid transport and me	100.0
PLN02866		1068	phospholipase D	100.0
PRK12452		509	cardiolipin synthetase; Reviewed	100.0
PRK01642		483	cls cardiolipin synthetase; Reviewed	100.0
PRK11263		411	cardiolipin synthase 2; Provisional	100.0
COG1502		438	Cls Phosphatidylserine/phosphatidylglycerophosphat	100.0
PRK09428		451	pssA phosphatidylserine synthase; Provisional	100.0
PHA02820		424	phospholipase-D-like protein; Provisional	100.0
PHA03003		369	palmytilated EEV membrane glycoprotein; Provisiona	99.98
PLN02230		598	phosphoinositide phospholipase C 4	99.94
KOG0169		746	consensus Phosphoinositide-specific phospholipase	99.94
PLN02223		537	phosphoinositide phospholipase C	99.94
PLN02222		581	phosphoinositide phospholipase C 2	99.93
cd04015		158	C2_plant_PLD C2 domain present in plant phospholip	99.93
PLN02952		599	phosphoinositide phospholipase C	99.92
PF12357		74	PLD_C: Phospholipase D C terminal ; InterPro: IPR0	99.92
PLN02228		567	Phosphoinositide phospholipase C	99.91
KOG1264		1267	consensus Phospholipase C [Lipid transport and met	99.88
cd04016		121	C2_Tollip C2 domain present in Toll-interacting pr	99.85
cd04013		146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.83
cd08379		126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd04042		121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.8
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.8
cd08400		126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.77
cd04019		150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.76
cd08681		118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.75
cd08401		121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.75
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.74
PRK05443		691	polyphosphate kinase; Provisional	99.74
cd08377		119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.72
cd08378		121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.72
cd08678		126	C2_C21orf25-like C2 domain found in the Human chro	99.72
TIGR03705		672	poly_P_kin polyphosphate kinase 1. Members of this	99.72
cd04044		124	C2A_Tricalbin-like C2 domain first repeat present	99.71
cd08391		121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.71
cd04014		132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.71
cd04036		119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.7
cd04024		128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd08376		116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.69
cd04054		121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.69
KOG1265		1189	consensus Phospholipase C [Lipid transport and met	99.68
cd04033		133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.68
cd04025		123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.68
cd08395		120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.68
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.67
cd04046		126	C2_Calpain C2 domain present in Calpain proteins.	99.67
KOG1030		168	consensus Predicted Ca2+-dependent phospholipid-bi	99.66
cd04050		105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.66
cd08381		122	C2B_PI3K_class_II C2 domain second repeat present	99.66
cd08375		136	C2_Intersectin C2 domain present in Intersectin. A	99.65
cd08688		110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.65
cd08685		119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.65
cd08387		124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.64
cd08382		123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.63
cd04045		120	C2C_Tricalbin-like C2 domain third repeat present	99.62
cd08385		124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.62
cd04010		148	C2B_RasA3 C2 domain second repeat present in RAS p	99.62
cd04028		146	C2B_RIM1alpha C2 domain second repeat contained in	99.62
cd04041		111	C2A_fungal C2 domain first repeat; fungal group. C	99.62
cd04029		125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.62
cd04051		125	C2_SRC2_like C2 domain present in Soybean genes Re	99.62
cd04027		127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.61
cd08394		127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.61
cd04018		151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.61
cd08393		125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.61
cd08677		118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.6
cd04030		127	C2C_KIAA1228 C2 domain third repeat present in unc	99.6
cd04043		126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.59
cd04017		135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.59
cd08383		117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.59
cd04040		115	C2D_Tricalbin-like C2 domain fourth repeat present	99.59
cd04031		125	C2A_RIM1alpha C2 domain first repeat contained in	99.58
cd08386		125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.58
cd04052		111	C2B_Tricalbin-like C2 domain second repeat present	99.58
cd04049		124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.58
cd04039		108	C2_PSD C2 domain present in Phosphatidylserine dec	99.57
cd08521		123	C2A_SLP C2 domain first repeat present in Synaptot	99.56
cd08392		128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.56
cd04011		111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.56
cd08676		153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.55
cd00275		128	C2_PLC_like C2 domain present in Phosphoinositide-	99.55
cd08384		133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.55
cd08680		124	C2_Kibra C2 domain found in Human protein Kibra. K	99.54
cd08690		155	C2_Freud-1 C2 domain found in 5' repressor element	99.54
cd08390		123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.53
cd08404		136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.53
cd08388		128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.53
cd08403		134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.52
cd08402		136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.51
cd04020		162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.51
cd04032		127	C2_Perforin C2 domain of Perforin. Perforin contai	99.51
cd08389		124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.51
cd08406		136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.5
cd00276		134	C2B_Synaptotagmin C2 domain second repeat present	99.5
cd08675		137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.5
cd04026		131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.5
cd08405		136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.5
cd08407		138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.49
cd04038		145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.48
cd08410		135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.47
cd04021		125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.47
cd04009		133	C2B_Munc13-like C2 domain second repeat in Munc13	99.47
cd04048		120	C2A_Copine C2 domain first repeat in Copine. There	99.46
KOG0696		683	consensus Serine/threonine protein kinase [Signal	99.46
cd04037		124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.46
cd00138		176	PLDc Phospholipase D. Active site motifs; The PLD	99.45
cd08692		135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.44
cd08409		137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.44
cd04035		123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.43
cd08691		137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.42
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.41
cd08686		118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.39
cd08408		138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.38
PHA02820		424	phospholipase-D-like protein; Provisional	99.34
KOG1028		421	consensus Ca2+-dependent phospholipid-binding prot	99.34
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	99.34
cd04047		110	C2B_Copine C2 domain second repeat in Copine. Ther	99.28
PF00168		85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.24
KOG2059		800	consensus Ras GTPase-activating protein [Signal tr	99.21
cd00138		176	PLDc Phospholipase D. Active site motifs; The PLD	99.21
PHA03003		369	palmytilated EEV membrane glycoprotein; Provisiona	99.2
cd00030		102	C2 C2 domain. The C2 domain was first identified i	99.14
smart00239		101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.13
PRK13912		177	nuclease NucT; Provisional	99.12
PRK12452		509	cardiolipin synthetase; Reviewed	99.07
PRK13912		177	nuclease NucT; Provisional	99.07
COG5038		1227	Ca2+-dependent lipid-binding protein, contains C2	99.02
COG5038		1227	Ca2+-dependent lipid-binding protein, contains C2	98.97
smart00149		115	PLCYc Phospholipase C, catalytic domain (part); do	98.9
PF13091		126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	98.88
PF13091		126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	98.88
KOG1028		421	consensus Ca2+-dependent phospholipid-binding prot	98.86
cd08633		254	PI-PLCc_eta2 Catalytic domain of metazoan phosphoi	98.85
cd08630		258	PI-PLCc_delta3 Catalytic domain of metazoan phosph	98.85
cd08595		257	PI-PLCc_zeta Catalytic domain of metazoan phosphoi	98.85
KOG1031		1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.83
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	98.83
cd08597		260	PI-PLCc_PRIP_metazoa Catalytic domain of metazoan	98.83
cd08592		229	PI-PLCc_gamma Catalytic domain of metazoan phospho	98.83
cd08629		258	PI-PLCc_delta1 Catalytic domain of metazoan phosph	98.83
cd08627		229	PI-PLCc_gamma1 Catalytic domain of metazoan phosph	98.83
cd08596		254	PI-PLCc_epsilon Catalytic domain of metazoan phosp	98.82
cd08625		258	PI-PLCc_beta3 Catalytic domain of metazoan phospho	98.82
cd08628		254	PI-PLCc_gamma2 Catalytic domain of metazoan phosph	98.82
cd08624		261	PI-PLCc_beta2 Catalytic domain of metazoan phospho	98.82
cd08631		258	PI-PLCc_delta4 Catalytic domain of metazoan phosph	98.8
cd08626		257	PI-PLCc_beta4 Catalytic domain of metazoan phospho	98.79
cd08632		253	PI-PLCc_eta1 Catalytic domain of metazoan phosphoi	98.79
cd08374		133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.79
cd08594		227	PI-PLCc_eta Catalytic domain of metazoan phosphoin	98.79
KOG3603		456	consensus Predicted phospholipase D [General funct	98.77
cd08623		258	PI-PLCc_beta1 Catalytic domain of metazoan phospho	98.76
cd08599		228	PI-PLCc_plant Catalytic domain of plant phosphatid	98.73
PF00614		28	PLDc: Phospholipase D Active site motif; InterPro:	98.72
cd08591		257	PI-PLCc_beta Catalytic domain of metazoan phosphoi	98.72
cd08598		231	PI-PLC1c_yeast Catalytic domain of putative yeast	98.72
PRK11263		411	cardiolipin synthase 2; Provisional	98.72
cd08558		226	PI-PLCc_eukaryota Catalytic domain of eukaryotic p	98.71
cd08689		109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.71
cd08593		257	PI-PLCc_delta Catalytic domain of metazoan phospho	98.7
PRK01642		483	cls cardiolipin synthetase; Reviewed	98.61
PRK05443		691	polyphosphate kinase; Provisional	98.56
PF00387		118	PI-PLC-Y: Phosphatidylinositol-specific phospholip	98.52
PRK09428		451	pssA phosphatidylserine synthase; Provisional	98.41
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	98.33
COG1502		438	Cls Phosphatidylserine/phosphatidylglycerophosphat	97.85
KOG3603		456	consensus Predicted phospholipase D [General funct	97.84
KOG2059		800	consensus Ras GTPase-activating protein [Signal tr	97.83
cd08683		143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.73
PLN02866		1068	phospholipase D	97.34
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	97.33
KOG0905		1639	consensus Phosphoinositide 3-kinase [Signal transd	97.22
KOG1326		1105	consensus Membrane-associated protein FER-1 and re	97.21
KOG1013		362	consensus Synaptic vesicle protein rabphilin-3A [I	97.04
PLN02964		644	phosphatidylserine decarboxylase	96.96
smart00155		28	PLDc Phospholipase D. Active site motifs. Phosphat	96.79
KOG1013		362	consensus Synaptic vesicle protein rabphilin-3A [I	96.79
smart00155		28	PLDc Phospholipase D. Active site motifs. Phosphat	96.77
TIGR03705		672	poly_P_kin polyphosphate kinase 1. Members of this	96.61
PF13918		177	PLDc_3: PLD-like domain	96.42
KOG2060		405	consensus Rab3 effector RIM1 and related proteins,	96.2
KOG3964		469	consensus Phosphatidylglycerolphosphate synthase [	96.15
cd00137		274	PI-PLCc Catalytic domain of prokaryotic and eukary	96.13
KOG1326		1105	consensus Membrane-associated protein FER-1 and re	95.91
PF07894		284	DUF1669: Protein of unknown function (DUF1669); In	95.77
PF10358		143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.54
KOG1327		529	consensus Copine [Signal transduction mechanisms]	95.19
PF12416		340	DUF3668: Cep120 protein; InterPro: IPR022136 This	94.92
cd08398		158	C2_PI3K_class_I_alpha C2 domain present in class I	94.87
PF00614		28	PLDc: Phospholipase D Active site motif; InterPro:	94.83
cd08684		103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	94.77
KOG3837		523	consensus Uncharacterized conserved protein, conta	93.75
cd08693		173	C2_PI3K_class_I_beta_delta C2 domain present in cl	93.14
PF11495		233	Regulator_TrmB: Archaeal transcriptional regulator	91.67
cd08380		156	C2_PI3K_like C2 domain present in phosphatidylinos	91.25
COG3886		198	Predicted HKD family nuclease [DNA replication, re	90.98
PF13090		352	PP_kinase_C: Polyphosphate kinase C-terminal domai	90.39
cd04012		171	C2A_PI3K_class_II C2 domain first repeat present i	89.99
cd08399		178	C2_PI3K_class_I_gamma C2 domain present in class I	89.14
KOG1452		442	consensus Predicted Rho GTPase-activating protein	89.05
PLN02352		758	phospholipase D epsilon	88.87
cd08397		159	C2_PI3K_class_III C2 domain present in class III p	88.19
PLN02270		808	phospholipase D alpha	85.72
PF00792		142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	85.31
PF15627		156	CEP76-C2: CEP76 C2 domain	85.08
PF15625		168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	84.36
KOG4269		1112	consensus Rac GTPase-activating protein BCR/ABR [S	83.92
PF13918		177	PLDc_3: PLD-like domain	83.75
KOG1329		887	consensus Phospholipase D1 [Lipid transport and me	82.48
PF14429		184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	81.65
PLN03008		868	Phospholipase D delta	81.15

>PLN03008 Phospholipase D delta	Back alignment and domain information

Probab=100.00  E-value=1.3e-185  Score=1647.84  Aligned_cols=774  Identities=56%  Similarity=0.968  Sum_probs=713.5

Q ss_pred             CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccc---------------------------ccCCCCCCCcEEEE
Q 001250          337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---------------------------QMNTKITSDPYVTI  389 (1114)
Q Consensus       337 ~~~~~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k---------------------------~~~~~itsDPYV~V  389 (1114)
                      +-++.+.||||+|+|||++|++|++||++.++++.+|..                           ++.+.+++||||+|
T Consensus         4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I   83 (868)
T PLN03008          4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV   83 (868)
T ss_pred             ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence            456788999999999999999999999887766655530                           12246789999999


Q ss_pred             EECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCC
Q 001250          390 AVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP  469 (1114)
Q Consensus       390 ~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp  469 (1114)
                      .+++++++||+|++++.||+|||+|+|+|+++...|+|+|||+|.+++++||++.|||++|..|..+++|++|++.+|++
T Consensus        84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp  163 (868)
T PLN03008         84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP  163 (868)
T ss_pred             EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence            99999889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEEEeccccccccccCcCCCCCCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHH
Q 001250          470 CKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYD  549 (1114)
Q Consensus       470 ~k~~g~L~L~l~F~p~~~~~~~~~GV~~~~~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~a  549 (1114)
                      ++++++|+|+|+|+|+++++.|.+||++++++.|||+||||+|+||+||||||||++||++|+|.|+||+.|++++||++
T Consensus       164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed  243 (868)
T PLN03008        164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED  243 (868)
T ss_pred             CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence            99999999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccceEEEEEEEecceeEEeCCC--CChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcH
Q 001250          550 ICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE  627 (1114)
Q Consensus       550 l~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~--~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~  627 (1114)
                      |++||++||++|||+|||++++++|+|+..  .+.+.||++||++||+|||+|+|||||+.+|...+++++.|+|.|+|+
T Consensus       244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde  323 (868)
T PLN03008        244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE  323 (868)
T ss_pred             HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence            999999999999999999999999999974  224789999999999999999999999999987778899999999999


Q ss_pred             HHHHHHhcCCcEEEEccCccCccccccccc-----------ccccccccccceEEEcCCCCCCCccEEEEEcccccCCCc
Q 001250          628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR  696 (1114)
Q Consensus       628 ~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~-----------~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgR  696 (1114)
                      +++++|+|++|+|.+||+.+...++++++.           .++++|+||||+||||+++++++|+.||||||||||+||
T Consensus       324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR  403 (868)
T PLN03008        324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR  403 (868)
T ss_pred             HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence            999999999999999999877777887763           456889999999999998777889999999999999999


Q ss_pred             CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCC----ccccC-CC
Q 001250          697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHG----IKKLK-SG  771 (1114)
Q Consensus       697 wDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~----~~~L~-~~  771 (1114)
                      |||++|++++++++.+.+||+||++.+ ..+.|++||||+|++|+||||++|+.+|++||+++++...    .++.. +.
T Consensus       404 wDT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~  482 (868)
T PLN03008        404 YDTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ  482 (868)
T ss_pred             cCCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence            999999999999999999999999754 3557899999999999999999999999999999998531    11111 34


Q ss_pred             chhhhhhccCCCccCCCC--------------C-C-CCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccc
Q 001250          772 DDALLRIERIPGIIGISD--------------A-P-SVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNV  835 (1114)
Q Consensus       772 ~~~ll~~~~~p~~~~~~~--------------~-p-~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~  835 (1114)
                      ++.|+.+++++.++.+..              . + ...+.++++|.+|+|||++.+++++||+.+++++.++++|||++
T Consensus       483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~  562 (868)
T PLN03008        483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL  562 (868)
T ss_pred             cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence            677777777766543210              0 0 11135678999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCC
Q 001250          836 LIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPT  915 (1114)
Q Consensus       836 ~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~  915 (1114)
                      ++|+||++||++||++||||||||||||++++++|+++.+.++.|+|++||++||++|++++++|+||||+|+||||.++
T Consensus       563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~  642 (868)
T PLN03008        563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK  642 (868)
T ss_pred             chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccC-----------------------------CceE
Q 001250          916 GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLG-----------------------------NREV  966 (1114)
Q Consensus       916 ~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~-----------------------------~HsK  966 (1114)
                      ++++|+||+||++||++||.+|+++|+++|...  +|.+||+|||||                             .|+|
T Consensus       643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK  720 (868)
T PLN03008        643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAK  720 (868)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeee
Confidence            999999999999999999999999999987543  478999999984                             3788


Q ss_pred             EeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCcchhhcccCCCchhHHHHHHHHHHHHhCCCccccCCCcchHHH
Q 001250          967 IDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECV 1046 (1114)
Q Consensus       967 ~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~~~a~~~~~~~g~i~~lR~~Lw~EHLG~~~~~f~~p~sle~v 1046 (1114)
                      ++++|| ++++|||||||+|||.|+|||||++++||+.++|+.+++.++|+|++|||+||+||||+.++.|.+|+++|||
T Consensus       721 ~~ivDd-~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~ecv  799 (868)
T PLN03008        721 GMIVDD-EYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECL  799 (868)
T ss_pred             EEEECC-CEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHHHH
Confidence            999999 7999999999999999999999999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhchhhhhhhcccccccccccCCcccCCCCCccCCCCCCCCCCCCCceecccc-ccCcCCCC
Q 001250         1047 RKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 1114 (1114)
Q Consensus      1047 ~~v~~~ae~n~~~~a~~~~~~~~GhLv~yP~~~~~~g~~~~lpg~~~fpd~~~~i~g~~~-~~~~~lt~ 1114 (1114)
                      ++||++|++||++|+++++++|+||||+||+.|++||+|++|||+|+||||+|+|+|+++ +||++|||
T Consensus       800 ~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt  868 (868)
T PLN03008        800 KKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT  868 (868)
T ss_pred             HHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence            999999999999999999999999999999999999999999999999999999999996 89999997

>PLN02270 phospholipase D alpha	Back alignment and domain information

>PLN02352 phospholipase D epsilon	Back alignment and domain information

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]	Back alignment and domain information

>PLN02866 phospholipase D	Back alignment and domain information

>PRK12452 cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK01642 cls cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK11263 cardiolipin synthase 2; Provisional	Back alignment and domain information

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>PRK09428 pssA phosphatidylserine synthase; Provisional	Back alignment and domain information

>PHA02820 phospholipase-D-like protein; Provisional	Back alignment and domain information

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional	Back alignment and domain information

>PLN02230 phosphoinositide phospholipase C 4	Back alignment and domain information

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]	Back alignment and domain information

>PLN02223 phosphoinositide phospholipase C	Back alignment and domain information

>PLN02222 phosphoinositide phospholipase C 2	Back alignment and domain information

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>PLN02952 phosphoinositide phospholipase C	Back alignment and domain information

>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group	Back alignment and domain information

>PLN02228 Phosphoinositide phospholipase C	Back alignment and domain information

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)	Back alignment and domain information

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family	Back alignment and domain information

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)	Back alignment and domain information

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins	Back alignment and domain information

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>PRK05443 polyphosphate kinase; Provisional	Back alignment and domain information

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein	Back alignment and domain information

>TIGR03705 poly_P_kin polyphosphate kinase 1	Back alignment and domain information

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon	Back alignment and domain information

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)	Back alignment and domain information

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4	Back alignment and domain information

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)	Back alignment and domain information

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4	Back alignment and domain information

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

>cd04046 C2_Calpain C2 domain present in Calpain proteins	Back alignment and domain information

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]	Back alignment and domain information

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>cd08375 C2_Intersectin C2 domain present in Intersectin	Back alignment and domain information

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone	Back alignment and domain information

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family	Back alignment and domain information

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8	Back alignment and domain information

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins	Back alignment and domain information

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10	Back alignment and domain information

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)	Back alignment and domain information

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>cd04041 C2A_fungal C2 domain first repeat; fungal group	Back alignment and domain information

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5	Back alignment and domain information

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins	Back alignment and domain information

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin	Back alignment and domain information

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2	Back alignment and domain information

>cd08677 C2A_Synaptotagmin-13 C2 domain	Back alignment and domain information

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins	Back alignment and domain information

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group	Back alignment and domain information

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin	Back alignment and domain information

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7	Back alignment and domain information

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene	Back alignment and domain information

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)	Back alignment and domain information

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3	Back alignment and domain information

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin	Back alignment and domain information

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain	Back alignment and domain information

>cd08680 C2_Kibra C2 domain found in Human protein Kibra	Back alignment and domain information

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)	Back alignment and domain information

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17	Back alignment and domain information

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4	Back alignment and domain information

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11	Back alignment and domain information

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10	Back alignment and domain information

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1	Back alignment and domain information

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4	Back alignment and domain information

>cd04032 C2_Perforin C2 domain of Perforin	Back alignment and domain information

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16	Back alignment and domain information

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12	Back alignment and domain information

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin	Back alignment and domain information

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma	Back alignment and domain information

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7	Back alignment and domain information

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13	Back alignment and domain information

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)	Back alignment and domain information

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17	Back alignment and domain information

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase	Back alignment and domain information

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>cd04048 C2A_Copine C2 domain first repeat in Copine	Back alignment and domain information

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin	Back alignment and domain information

>cd00138 PLDc Phospholipase D	Back alignment and domain information

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)	Back alignment and domain information

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15	Back alignment and domain information

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain	Back alignment and domain information

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein	Back alignment and domain information

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16	Back alignment and domain information

>PHA02820 phospholipase-D-like protein; Provisional	Back alignment and domain information

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd04047 C2B_Copine C2 domain second repeat in Copine	Back alignment and domain information

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking	Back alignment and domain information

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>cd00138 PLDc Phospholipase D	Back alignment and domain information

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional	Back alignment and domain information

>cd00030 C2 C2 domain	Back alignment and domain information

>smart00239 C2 Protein kinase C conserved region 2 (CalB)	Back alignment and domain information

>PRK13912 nuclease NucT; Provisional	Back alignment and domain information

>PRK12452 cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK13912 nuclease NucT; Provisional	Back alignment and domain information

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y	Back alignment and domain information

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A	Back alignment and domain information

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A	Back alignment and domain information

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2	Back alignment and domain information

>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3	Back alignment and domain information

>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta	Back alignment and domain information

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein	Back alignment and domain information

>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma	Back alignment and domain information

>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1	Back alignment and domain information

>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1	Back alignment and domain information

>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon	Back alignment and domain information

>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3	Back alignment and domain information

>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2	Back alignment and domain information

>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2	Back alignment and domain information

>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4	Back alignment and domain information

>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4	Back alignment and domain information

>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1	Back alignment and domain information

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin	Back alignment and domain information

>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta	Back alignment and domain information

>KOG3603 consensus Predicted phospholipase D [General function prediction only]	Back alignment and domain information

>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1	Back alignment and domain information

>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)	Back alignment and domain information

>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta	Back alignment and domain information

>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>PRK11263 cardiolipin synthase 2; Provisional	Back alignment and domain information

>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins	Back alignment and domain information

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae	Back alignment and domain information

>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta	Back alignment and domain information

>PRK01642 cls cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK05443 polyphosphate kinase; Provisional	Back alignment and domain information

>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3	Back alignment and domain information

>PRK09428 pssA phosphatidylserine synthase; Provisional	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>KOG3603 consensus Predicted phospholipase D [General function prediction only]	Back alignment and domain information

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins	Back alignment and domain information

>PLN02866 phospholipase D	Back alignment and domain information

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN02964 phosphatidylserine decarboxylase	Back alignment and domain information

>smart00155 PLDc Phospholipase D	Back alignment and domain information

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>smart00155 PLDc Phospholipase D	Back alignment and domain information

>TIGR03705 poly_P_kin polyphosphate kinase 1	Back alignment and domain information

>PF13918 PLDc_3: PLD-like domain	Back alignment and domain information

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]	Back alignment and domain information

>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	Back alignment and domain information

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []	Back alignment and domain information

>KOG1327 consensus Copine [Signal transduction mechanisms]	Back alignment and domain information

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length	Back alignment and domain information

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)	Back alignment and domain information

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)	Back alignment and domain information

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]	Back alignment and domain information

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator	Back alignment and domain information

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B	Back alignment and domain information

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>PLN02352 phospholipase D epsilon	Back alignment and domain information

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>PLN02270 phospholipase D alpha	Back alignment and domain information

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2	Back alignment and domain information

>PF15627 CEP76-C2: CEP76 C2 domain	Back alignment and domain information

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain	Back alignment and domain information

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]	Back alignment and domain information

>PF13918 PLDc_3: PLD-like domain	Back alignment and domain information

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]	Back alignment and domain information

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A	Back alignment and domain information

>PLN03008 Phospholipase D delta	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1114
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-23
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-19
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	2e-19
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-16
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-16
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-16
2nq3_A		173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	3e-14
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-14
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-13
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	8e-12
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	2e-11
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	6e-04
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-11
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-06
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-10
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-10
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-08
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-07
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
2cjt_A		131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-08
3rdl_A		137	Protein kinase C alpha type; protein kinase PKC, t	1e-08
3fbk_A		153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-08
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-08
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	8e-07
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	6e-08
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	7e-08
1cjy_A		749	CPLA2, protein (cytosolic phospholipase A2); lipid	8e-08
1rsy_A		152	Synaptotagmin I; calcium/phospholipid binding prot	1e-07
2cjs_A		167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-07
3bxj_A		483	RAS GTPase-activating protein syngap; GTPase activ	4e-07
2z0u_A		155	WW domain-containing protein 1; C2 domain, alterna	4e-07
3fdw_A		148	Synaptotagmin-like protein 4; structural genomics,	6e-07
1rh8_A		142	Piccolo protein; beta-sandwich, metal binding prot	7e-07
2chd_A		142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-06
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	2e-06
2bwq_A		129	Regulating synaptic membrane exocytosis protein 2;	3e-06
2dmg_A		142	KIAA1228 protein; beta-sandwich, structural genomi	3e-06
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	6e-06
1tjx_A		159	Similar to synaptotagmini/P65; C2B domain, calcium	6e-06
1w15_A		153	Synaptotagmin IV; metal binding protein, endocytos	7e-06
3n5a_A		138	Synaptotagmin-7; calcium/phospholipid binding prot	7e-06
2d8k_A		141	Synaptotagmin VII; exocytosis, calcium binding, ly	8e-06
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	1e-05
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	2e-05
1wfm_A		138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-05
2cm5_A		166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-04
3h0g_A		1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-04
2b3r_A		134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-04

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157	Back alignment and structure

 Score = 97.7 bits (243), Expect = 1e-23
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 322 SDSFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKI 381
           S   +  +  +VP    S   +  +G L + I  A  L              +       
Sbjct: 4   SHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWS-----LRHSLFKKGHQ 58

Query: 382 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGS-ELI 440
             DPY+T++V    VG+T     +  P + + F   V      +   V     +G    +
Sbjct: 59  LLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAVFHETPLGYDHFV 117

Query: 441 GTVAIPVEQIYSGGKVEGTYPV---LNGSGK 468
               +  +++        T+     L   GK
Sbjct: 118 ANCTLQFQELLRTTGASDTFEGWVDLEPEGK 148

PyMOL of 2fk9

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136	Back alignment and structure

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133	Back alignment and structure

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126	Back alignment and structure

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173	Back alignment and structure

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148	Back alignment and structure

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506	Back alignment and structure

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131	Back alignment and structure

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149	Back alignment and structure

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749	Back alignment and structure

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152	Back alignment and structure

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167	Back alignment and structure

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483	Back alignment and structure

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155	Back alignment and structure

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148	Back alignment and structure

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142	Back alignment and structure

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141	Back alignment and structure

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129	Back alignment and structure

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138	Back alignment and structure

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159	Back alignment and structure

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153	Back alignment and structure

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138	Back alignment and structure

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171	Back alignment and structure

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138	Back alignment and structure

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166	Back alignment and structure

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752	Back alignment and structure

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1114
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	100.0
3hsi_A		458	Phosphatidylserine synthase; CDP- diacylglycerol--	99.97
1djx_A		624	PLC-D1, phosphoinositide-specific phospholipase C,	99.93
3qr0_A		816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.9
3ohm_B		885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.9
2zkm_X		799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.9
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
1xdp_A		687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	99.81
2o8r_A		705	Polyphosphate kinase; structural genomics, protein	99.81
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.79
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.79
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	99.78
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.78
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.77
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	99.77
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.75
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.74
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.72
2nq3_A		173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.7
2b3r_A		134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.65
1rsy_A		152	Synaptotagmin I; calcium/phospholipid binding prot	99.65
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	99.64
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.64
3fbk_A		153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.64
1rh8_A		142	Piccolo protein; beta-sandwich, metal binding prot	99.64
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	99.64
2d8k_A		141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.64
2bwq_A		129	Regulating synaptic membrane exocytosis protein 2;	99.63
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.63
3rdl_A		137	Protein kinase C alpha type; protein kinase PKC, t	99.63
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	99.63
2z0u_A		155	WW domain-containing protein 1; C2 domain, alterna	99.63
3fdw_A		148	Synaptotagmin-like protein 4; structural genomics,	99.63
2dmg_A		142	KIAA1228 protein; beta-sandwich, structural genomi	99.62
1wfm_A		138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.62
2chd_A		142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.59
1w15_A		153	Synaptotagmin IV; metal binding protein, endocytos	99.59
3n5a_A		138	Synaptotagmin-7; calcium/phospholipid binding prot	99.58
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.58
1tjx_A		159	Similar to synaptotagmini/P65; C2B domain, calcium	99.58
2cm5_A		166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.57
2cjt_A		131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.56
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	99.55
4ggj_A		196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.54
3l9b_A		144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.53
3bxj_A		483	RAS GTPase-activating protein syngap; GTPase activ	99.48
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.48
3jzy_A		510	Intersectin 2; C2 domain, structural genomics cons	99.47
2cjs_A		167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.46
1byr_A		155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.44
3nsj_A		540	Perforin-1; pore forming protein, immune system; H	99.43
1byr_A		155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.38
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.36
1cjy_A		749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.35
4gel_A		220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	99.33
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.27
4ggj_A		196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.24
3pfq_A		674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.07
1yrk_A		126	NPKC-delta, protein kinase C, delta type; C2 domai	98.94
1xdp_A		687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	98.92
2enj_A		138	NPKC-theta, protein kinase C theta type; beta-sand	98.91
4gel_A		220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	98.83
3hsi_A		458	Phosphatidylserine synthase; CDP- diacylglycerol--	98.67
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	98.39
2o8r_A		705	Polyphosphate kinase; structural genomics, protein	97.75
3qph_A		342	TRMB, A global transcription regulator; transcript	93.38
2f5t_X		233	Archaeal transcriptional regulator TRMB; sugar-bin	91.8
2wxf_A		940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	81.84

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*	Back alignment and structure

Probab=100.00  E-value=1.1e-34  Score=345.07  Aligned_cols=369  Identities=15%  Similarity=0.106  Sum_probs=202.8

Q ss_pred             hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccC--CEEEEEEecCCCcccccccccccccc
Q 001250          546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEG--VRVLLLVWDDPTSRSILGYKMDGVMQ  623 (1114)
Q Consensus       546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eG--VrVrlLvwD~~~s~~~lg~k~~gvm~  623 (1114)
                      +|++|+++|++||++|+|++|++      ++++.  .+.+|.++|++||+||  |+||||+ |..++....         
T Consensus        67 ~~~~l~~~I~~Ak~~I~i~~y~~------~~~d~--~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~---------  128 (506)
T 1v0w_A           67 LLAKMTENIGNATRTVDISTLAP------FPNGA--FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN---------  128 (506)
T ss_dssp             HHHHHHHHHHTCSSEEEEEEESS------CCCHH--HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---------
T ss_pred             HHHHHHHHHHHhccEEEEEEeec------cCCCh--HHHHHHHHHHHHHhCCCCcEEEEEE-eCccccccc---------
Confidence            69999999999999999999963      13433  6789999999999999  9999996 554332110         


Q ss_pred             cCcHHHHHHHhcCCcEEE-EccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250          624 THDEETRRVFKHSSVKVL-LCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH  702 (1114)
Q Consensus       624 t~d~~~~~~~~h~gV~v~-l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H  702 (1114)
                      .......+.|+..|+++. ..|...   ..|..  ....+.+||||++|||+        .+||+||+||++++|.+.  
T Consensus       129 ~~~~~~~~~L~~~g~~~~~~~~~~~---~~~~~--~~~~~~r~H~K~~ViD~--------~~a~~Gg~Nl~~d~y~~~--  193 (506)
T 1v0w_A          129 VIPSKYRDELTAKLGKAAENITLNV---ASMTT--SKTAFSWNHSKILVVDG--------QSALTGGINSWKDDYLDT--  193 (506)
T ss_dssp             CHHHHHHHHHHHHHGGGGGGEEEEE---EEECS--BTTTTBCBCCCEEEETT--------TEEEEESCCCCHHHHTSS--
T ss_pred             cCCHHHHHHHHhcccceeecCcccc---ccccc--cCCccccceeeEEEECC--------cEEEeeccccCccccccC--
Confidence            011234444555444321 000000   00000  00113499999999999        799999999987777541  


Q ss_pred             CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCC-CccccCCCchhhhhhccC
Q 001250          703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPH-GIKKLKSGDDALLRIERI  781 (1114)
Q Consensus       703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~-~~~~L~~~~~~ll~~~~~  781 (1114)
                                                 ..+|||++++|+||+|.+++..|.++|+...... .+..+. .... ...+..
T Consensus       194 ---------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~~~-~~~~-~~~~~~  244 (506)
T 1v0w_A          194 ---------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVW-FAAS-GNAGCM  244 (506)
T ss_dssp             ---------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTTEE-EEES-TTCCCC
T ss_pred             ---------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccCChhhhc-cccc-cccccC
Confidence                                       1479999999999999999999999999664310 010000 0000 000000


Q ss_pred             CCccCCCCCCCCcCCCCCCceEEE--------EeecCCcccCCCCCCchhhcccccccCccc--------cchHHHHHHH
Q 001250          782 PGIIGISDAPSVRENDAESWHVQI--------FRSIDSTSVRGFPKDPKEATSKNLVCGKNV--------LIDMSIHTAY  845 (1114)
Q Consensus       782 p~~~~~~~~p~~~~~~~~~~~vQv--------~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~--------~~e~sI~~AY  845 (1114)
                      +.... ...+.. ....+...+|+        +++.|......+  .+. +....++.+.+.        ..+.+|+++|
T Consensus       245 ~~~~~-~~~p~~-~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~--~w~-~~~~~~~~d~P~~~~~~~~~~~~~~~~~~~  319 (506)
T 1v0w_A          245 PTMHK-DTNPKA-SPATGNVPVIAVGGLGVGIKDVDPKSTFRPD--LPT-ASDTKCVVGLHDNTNADRDYDTVNPEESAL  319 (506)
T ss_dssp             TTHHH-HHSCSS-CCCCSSEEEEEEECCCSSSCSCCTTCCCCCC--CCC-CSSSCSSTTCCCTTTSCHHHHHHCHHHHHH
T ss_pred             chhcc-ccCccc-CcccccccceecccccceeecCCcccccccc--Ccc-cccceeeccccccccCcccccccccHHHHH
Confidence            00000 000000 00112223322        222221000000  000 000111111110        0135799999


Q ss_pred             HHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh----hHH
Q 001250          846 VKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA----TQR  921 (1114)
Q Consensus       846 l~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a----vq~  921 (1114)
                      +++|.+||++|||++|||.+-.. +        ...+..+|+.+|.+|+  .+||+|+||+|.+++......+    ...
T Consensus       320 ~~~I~~A~~~I~I~tq~~~pyf~-p--------~~~~~~~i~~aL~~Aa--~rGV~VrIl~~~~~~~~~~~~a~~~~~~~  388 (506)
T 1v0w_A          320 RALVASAKGHIEISQQDLNATCP-P--------LPRYDIRLYDALAAKM--AAGVKVRIVVSDPANRGAVGSGGYSQIKS  388 (506)
T ss_dssp             HHHHHTCSSEEEEEESCSSCCTT-T--------SCSCCHHHHHHHHHHH--HTTCEEEEEECCGGGCC------CCCCSC
T ss_pred             HHHHhCcCcEEEEEecccccccc-C--------cccchHHHHHHHHHHH--hCCCcEEEEeCCCCchHHHHHhHHHHHHH
Confidence            99999999999999966553100 0        0011237899999876  4789999999988754321100    000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-----------Cceeeec----CCCccccccCCceEEeccCCCceeCCCCCCCCcC
Q 001250          922 ILFWQHKTMQMMYETIYKALVEVG-----------LEGAFSP----QDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPER  986 (1114)
Q Consensus       922 il~wq~~tm~~~~~si~~~L~~aG-----------v~~~~~P----~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~R  986 (1114)
                      ++.. ...+..     ...|+++|           +++....    ..|..--....|+|++++|+ .+++|||+|||.|
T Consensus       389 L~~~-~~~l~~-----gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~~~~~~~lHaK~~vvD~-~~~~vGS~N~d~r  461 (506)
T 1v0w_A          389 LSEI-SDTLRN-----RLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDS-STFYIGSKNLYPS  461 (506)
T ss_dssp             THHH-HHHHHH-----HHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTTSCCCCBCCEEEEETT-TEEEEESCCSSCC
T ss_pred             HHHh-hhhhcc-----cchhcccccchhccccccceeeeeccccCccccccCccccceEEEEEECC-cEEEEeCCCCCCc
Confidence            1000 000000     01122222           2331000    01110001235999999998 7899999999999


Q ss_pred             CCCCCCCcceEEEEEcCc
Q 001250          987 SMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus       987 SM~G~rDsEIav~i~dp~ 1004 (1114)
                      ||     +|+++.+++++
T Consensus       462 S~-----~E~~l~i~~~~  474 (506)
T 1v0w_A          462 WL-----QDFGYIVESPE  474 (506)
T ss_dssp             CS-----BCEEEEEECHH
T ss_pred             ch-----hhceeEecCHH
Confidence            99     39999999875

PyMOL of 1v0w

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}	Back alignment and structure

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A	Back alignment and structure

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A	Back alignment and structure

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}	Back alignment and structure

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B	Back alignment and structure

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}	Back alignment and structure

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*	Back alignment and structure

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2	Back alignment and structure

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A	Back alignment and structure

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A	Back alignment and structure

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}	Back alignment and structure

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*	Back alignment and structure

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0	Back alignment and structure

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}	Back alignment and structure

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}	Back alignment and structure

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}	Back alignment and structure

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A	Back alignment and structure

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A	Back alignment and structure

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*	Back alignment and structure

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A	Back alignment and structure

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A	Back alignment and structure

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}	Back alignment and structure

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A	Back alignment and structure

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B	Back alignment and structure

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1	Back alignment and structure

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A	Back alignment and structure

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}	Back alignment and structure

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A	Back alignment and structure

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A	Back alignment and structure

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A	Back alignment and structure

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A	Back alignment and structure

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A	Back alignment and structure

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*	Back alignment and structure

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}	Back alignment and structure

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A	Back alignment and structure

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}	Back alignment and structure

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*	Back alignment and structure

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4	Back alignment and structure

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}	Back alignment and structure

>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5	Back alignment and structure

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1114
d1wfja_		136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-15
d1rsya_		143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-11
d1v0wa1		258	d.136.1.2 (A:6-263) Phospholipase D {Streptomyces	4e-11
d1rlwa_		126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	6e-11
d1a25a_		132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-11
d1gmia_		136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-10
d2ep6a1		126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	9e-10
d2bwqa1		125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-09
d1qasa2		131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-09
d2nq3a1		133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	5e-09
d1rh8a_		142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-08
d1w15a_		138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	8e-08
d2cm5a1		137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-07
d1ugka_		138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	5e-07
d2cjta1		128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-06
d2zkmx2		122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-05
d1bdya_		123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-04
d1uowa_		157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	0.001

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136	Back information, alignment and structure


class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 19/140 (13%)

Query: 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS 405
           HG L++ + SAK L + D  +                 DPYV +                
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNN---------------MDPYVQLTCRTQDQKSNVAEGMG 53

Query: 406 EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLN 464
             P W + F   V+    E+   + D DV    + +G   IP+E ++  G +  T   + 
Sbjct: 54  TTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113

Query: 465 GSGKPCKPGATLTLSIQYTP 484
              +       + +++ + P
Sbjct: 114 KDEEYK---GEIWVALSFKP 130

PyMOL of d1wfja_

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143	Back information, alignment and structure

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126	Back information, alignment and structure

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132	Back information, alignment and structure

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136	Back information, alignment and structure

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126	Back information, alignment and structure

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125	Back information, alignment and structure

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131	Back information, alignment and structure

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133	Back information, alignment and structure

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142	Back information, alignment and structure

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138	Back information, alignment and structure

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137	Back information, alignment and structure

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128	Back information, alignment and structure

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122	Back information, alignment and structure

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123	Back information, alignment and structure

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1114
d1v0wa1		258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.88
d2ep6a1		126	Multiple C2 and transmembrane domain-containing pr	99.78
d1wfja_		136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.74
d1gmia_		136	Domain from protein kinase C epsilon {Rat (Rattus	99.74
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	99.72
d1qasa2		131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.69
d2cjta1		128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.67
d1a25a_		132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.65
d2nq3a1		133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.65
d1rsya_		143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.6
d1rh8a_		142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.6
d1dqva1		130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.54
d2zkmx2		122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.52
d2cm5a1		137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.49
d1wfma_		138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.49
d2bwqa1		125	Regulating synaptic membrane exocytosis protein, r	99.48
d1w15a_		138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.48
d1bdya_		123	Domain from protein kinase C delta {Rat (Rattus no	99.46
d1ugka_		138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.44
d1uowa_		157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.42
d1dqva2		145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.35
d1v0wa2		246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.33
d1byra_		152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.23
d1byra_		152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.15
d1v0wa2		246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.07
d1v0wa1		258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.01
d2zkmx4		349	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	98.08
d1qasa3		327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	97.84
d1e7ua2		174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.85
d2o8ra3		188	Polyphosphate kinase, PPK {Porphyromonas gingivali	89.37
d2o8ra3		188	Polyphosphate kinase, PPK {Porphyromonas gingivali	88.9
d1xdpa3		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	84.03
d1xdpa4		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	83.02
d2o8ra4		186	Polyphosphate kinase, PPK {Porphyromonas gingivali	82.81
d1xdpa3		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	82.43

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.88  E-value=2.6e-23  Score=224.96  Aligned_cols=155  Identities=17%  Similarity=0.258  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccC--CEEEEEEecCCCcccccccccccccc
Q 001250          546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEG--VRVLLLVWDDPTSRSILGYKMDGVMQ  623 (1114)
Q Consensus       546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eG--VrVrlLvwD~~~s~~~lg~k~~gvm~  623 (1114)
                      +|++|.++|++||++|+|+.|++++      ++.  .+..|.++|+++|++|  |+||||+ |..++....         
T Consensus        65 ~~~~~~~~I~~A~~~I~i~~~~~~p------d~~--~~~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~---------  126 (258)
T d1v0wa1          65 LLAKMTENIGNATRTVDISTLAPFP------NGA--FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN---------  126 (258)
T ss_dssp             HHHHHHHHHHTCSSEEEEEEESSCC------CHH--HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---------
T ss_pred             HHHHHHHHHHHhccEEEEEEEEEcC------Cch--HHHHHHHHHHHHHhCCCCeEEEEEe-CCccccccc---------
Confidence            5899999999999999999986532      322  5789999999999999  9999995 776654210         


Q ss_pred             cCcHHHHHHHhc----CCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCC
Q 001250          624 THDEETRRVFKH----SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN  699 (1114)
Q Consensus       624 t~d~~~~~~~~h----~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt  699 (1114)
                      ......++.+..    .++.+.+.....   .     .....+.+||+||+|||+        .+|||||+||+++||+.
T Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~-----~~~~~~~rnH~Ki~VVDg--------~~a~vGG~Ni~~~~~~~  190 (258)
T d1v0wa1         127 VIPSKYRDELTAKLGKAAENITLNVASM---T-----TSKTAFSWNHSKILVVDG--------QSALTGGINSWKDDYLD  190 (258)
T ss_dssp             CHHHHHHHHHHHHHGGGGGGEEEEEEEE---C-----SBTTTTBCBCCCEEEETT--------TEEEEESCCCCHHHHTS
T ss_pred             cchHHHHHHHHHhccceeeccccccccc---c-----ccccccccccceEEEEcC--------CEEEECCcccCcccccC
Confidence            001122223332    222222211100   0     012235689999999999        79999999999999975


Q ss_pred             CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCC
Q 001250          700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPH  763 (1114)
Q Consensus       700 ~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~  763 (1114)
                      .                             ..||||++++|+||+|+++++.|.++|+.++++.
T Consensus       191 ~-----------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~  225 (258)
T d1v0wa1         191 T-----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNK  225 (258)
T ss_dssp             S-----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-----------------------------CCCeeeeEEEEECHHHHHHHHHHHHHHHHHhCCC
Confidence            2                             2479999999999999999999999999988763

PyMOL of d1v0wa1

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure