Citrus Sinensis ID: 001255

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110---
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
cHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccc
ccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHccccccccccccHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccc
mqrveglvlggaadhpCFRGLLKQlvgplstqlsdrrSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNckavrvlpriadcakNDRNAVLRARCCEYALLVLehwpdapeiqrsADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTwpersrrlfssfdPAIQRIINeedggmhrrhaspsvrergahlsftsqtstasnlsgygtSAIVAMdrssnlssgaslssGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGleisdkqnpstlrsssldlgvdppssrdppfpavvpasnddtnaFMVESTTsglnkgsnrnggmVLSDIITQIqaskdsgklsyhsnteslsslssystrrgseklqeRVSVEENDMREARrfvnphidrqyldasykdgnfrdshnsyipnfqrpllrkhgtgrmsasrrksfddsqlqlgemsnytdgpaslsdalseglspssdwcARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLAdiipscrkpfESYMERILPHVfsrlidpkelvrqpcsttldivsktysvdSLLPALLRSldeqrspkAKLAVIEFAISSLNKhamnsegsgnLGILKLWLAkltplvhdkntkLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQrlkssydpsdvvgtsseeGYAVASKKshyfgryssgsidsdggrkwssmqesnlmtgsmghamsdetKENLYQNfetganadvssktkdltgsntylegfstpridinglrdhlevsegaghnneippeldlnhhkpsaiktnsltdagpsipQILHLmcngndgsptskhGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVlsqydpfrclsVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRisqartgttidasq
mqrveglvlggaadhpCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIAdcakndrnavLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKtwpersrrlfssfdPAIQRIineedggmhrRHASPSVRERGAHLsftsqtstasnlsgYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRgleisdkqnpstLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTtsglnkgsnrnGGMVLSDIITQIQAskdsgklsyhsnteslsslssystrrgseklqervsveendmrearrfvnphidrqyLDASYKDGNFRDSHnsyipnfqrpllrkhgtgrmsasrrksfddsqlqLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTtldivsktysVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAlkqytprieVDLMNYLQSkkerqrlkssydpsdvvgtsseEGYAVAskkshyfgryssgsidsdggrkWSSMQESNLMTGSMGHAMSDETKENLYQNFETganadvssktkdltgsntylegfstpridiNGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVvlsqydpfrCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYAnrisqartgttidasq
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRssnlssgaslssglllsqakslNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLsyhsnteslsslssystrrgseKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
*****GLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRII**********************************************************************************************************************************************************************I*********************************************************HIDRQYLDASY*********************************************************************DWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL*******AKLAVIEFAISSLNKHAM***GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL******************************************************************************************************YLEGFSTPRIDINGL*******************************************QILHLMCN***********ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFD**********************************************************************************************************************************************************************************************************************************************DASYKDGNFRDSH**************************************SNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA************KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSL*****NSLRRALKQYTPRIE***********************************************************************************************************************************************LDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLV********************
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDG****************************NLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQ*********************KVSAIESMLRGLEISDK*********************DPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQA**************************************ENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKH****************QLQLGEMSNYTDGPASLS**********SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKK*************************ASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINE**************************************************************************************************************************RDPPF***********************************************************************************************************D**F****NSYIPNFQRPLLRKH**********************MSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIE**********************************************************************************************************************************************ELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1113 2.2.26 [Sep-21-2011]
Q8RWY61439 CLIP-associated protein O yes no 0.991 0.766 0.753 0.0
A1A5K21456 CLIP-associating protein N/A no 0.176 0.134 0.325 1e-29
A1A5G01452 CLIP-associating protein yes no 0.176 0.134 0.33 2e-29
Q4U0G11460 CLIP-associating protein N/A no 0.167 0.127 0.325 3e-29
Q7Z4601538 CLIP-associating protein yes no 0.176 0.127 0.33 5e-29
Q80TV81535 CLIP-associating protein yes no 0.176 0.127 0.33 6e-29
O751221294 CLIP-associating protein no no 0.181 0.156 0.312 4e-28
Q8BRT11286 CLIP-associating protein no no 0.181 0.157 0.312 5e-28
Q99JD41286 CLIP-associating protein no no 0.181 0.157 0.312 5e-28
Q6NYW61288 CLIP-associating protein no no 0.176 0.152 0.31 1e-26
>sp|Q8RWY6|CLASP_ARATH CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1 Back     alignment and function desciption
 Score = 1667 bits (4317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1139 (75%), Positives = 966/1139 (84%), Gaps = 36/1139 (3%)

Query: 1    MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 60
            M+RVEGLV GGA D+ CFRGLLKQLVGPLSTQL+DRRS+IVKQACHLLC LSKELLGDFE
Sbjct: 307  MRRVEGLVAGGATDYSCFRGLLKQLVGPLSTQLADRRSTIVKQACHLLCLLSKELLGDFE 366

Query: 61   ACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRAR 120
            ACAE FIPVLFKLVVITVLVIAES+DNCIKTMLRNCKA RVLPRIA+ AK+DRNA+LRAR
Sbjct: 367  ACAETFIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHDRNAILRAR 426

Query: 121  CCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR 180
            CCEYALL LEHWPDAPEIQRS DLYEDLIRCCVADAMSEVR+TARMCYRMFAKTWP+RSR
Sbjct: 427  CCEYALLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFAKTWPDRSR 486

Query: 181  RLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAM 240
            RLFSSFDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL GYGTSAIVAM
Sbjct: 487  RLFSSFDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPGYGTSAIVAM 545

Query: 241  DRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQN 300
            DRSSNLSSG SLSSGLLLSQ+K +NK +ERSLESVL +SKQKVSAIESMLRGL ISD+QN
Sbjct: 546  DRSSNLSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLRGLHISDRQN 605

Query: 301  PSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSD 360
            P+ LRSSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSNRNGG+ LSD
Sbjct: 606  PAALRSSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSNRNGGLGLSD 664

Query: 361  IITQIQASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMREARRFVN 417
            IITQIQASKDSG+ SY  N  +ES  + SS + +RGSE+  ER S+EE ND RE RRF+ 
Sbjct: 665  IITQIQASKDSGRSSYRGNLLSESHPTFSSLTAKRGSER-NERSSLEESNDAREVRRFMA 723

Query: 418  PHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMS 477
             H DRQ +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDSQLQ+G++S
Sbjct: 724  GHFDRQQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGDIS 783

Query: 478  NYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQ 537
            N+ DGPASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FEKVMKLF +
Sbjct: 784  NFVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKVMKLFLR 843

Query: 538  HLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDI 597
            HLDDPHHKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQPCS+TL+I
Sbjct: 844  HLDDPHHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTLEI 903

Query: 598  VSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAK 657
            VSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN GILKLWLAK
Sbjct: 904  VSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWLAK 963

Query: 658  LTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEV 717
            LTPL  DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALKQYTPRIEV
Sbjct: 964  LTPLTRDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRIEV 1023

Query: 718  DLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWS 777
            DL+NY+QSKKE+QR+K SYDPSD +GTSSEEGYA ASKK+ + GRYS GSIDSD GRKWS
Sbjct: 1024 DLLNYMQSKKEKQRIK-SYDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRKWS 1082

Query: 778  SMQESNLMTGSMGHAMSDETKENLYQNFETG---ANADVSSKTKDLT----GSNT----- 825
            S QE  ++TG +G  +S  T+E LYQN  TG   A+  ++ K  D T    G N+     
Sbjct: 1083 SSQEPTMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSISRTS 1142

Query: 826  ---------YLEGFSTPRIDINGLR----DHLEVSEGAGHNNEIPPELDLNHHKPSAIKT 872
                      L+  S P ++ NGL     D LE      H NE+  ELDL H+  ++IK 
Sbjct: 1143 PNGSSENIEILDDLSPPHLEKNGLNLTSVDSLE----GRHENEVSRELDLGHYMLTSIKV 1198

Query: 873  NSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLE 932
            N+  ++GPSIPQILH++   +    +SK   LQQLI+ASVAN+ S+WTKYFNQILT VLE
Sbjct: 1199 NTTPESGPSIPQILHMINGSDGSPSSSKKSGLQQLIEASVANEESVWTKYFNQILTVVLE 1258

Query: 933  VLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 992
            VLDD D S++E+ALSLI+EMLK+QKD MEDSVEIVIEKLLHV+KD VPKVS EAE CLT 
Sbjct: 1259 VLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPKVSTEAEQCLTT 1318

Query: 993  VLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 1052
            VLSQYDPFRCLSVIVPLLVTEDEKTLV CINCLTKLVGRLSQEELM QL SFLPA+FEAF
Sbjct: 1319 VLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQLSSFLPAVFEAF 1378

Query: 1053 GNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDA 1111
            G+QSADVRKTVVFCLVDIYIMLGKAFLPYLE LNSTQ+RLVTIYANRISQAR G  IDA
Sbjct: 1379 GSQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARNGAPIDA 1437
Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. Promotes the stabilization of dynamic microtubules during mitosis. Regulates microtubule-cortex attachment, thereby contributing to self-organization of cortical microtubules and subsequent cell shape.
Arabidopsis thaliana (taxid: 3702)
>sp|A1A5K2|CLA1B_XENLA CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1 Back     alignment and function description
>sp|A1A5G0|CLAP1_XENTR CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1 Back     alignment and function description
>sp|Q4U0G1|CLA1A_XENLA CLIP-associating protein 1-A OS=Xenopus laevis GN=clasp1-a PE=2 SV=2 Back     alignment and function description
>sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1 Back     alignment and function description
>sp|Q80TV8|CLAP1_MOUSE CLIP-associating protein 1 OS=Mus musculus GN=Clasp1 PE=1 SV=2 Back     alignment and function description
>sp|O75122|CLAP2_HUMAN CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2 Back     alignment and function description
>sp|Q8BRT1|CLAP2_MOUSE CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1 Back     alignment and function description
>sp|Q99JD4|CLAP2_RAT CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NYW6|CLAP2_DANRE CLIP-associating protein 2 OS=Danio rerio GN=clasp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1113
224069969 1426 predicted protein [Populus trichocarpa] 0.996 0.777 0.837 0.0
255560273 1384 conserved hypothetical protein [Ricinus 0.999 0.803 0.821 0.0
356505094 1440 PREDICTED: uncharacterized protein LOC10 0.996 0.770 0.801 0.0
225437885 1440 PREDICTED: CLIP-associating protein-like 0.993 0.768 0.808 0.0
356572317 1444 PREDICTED: uncharacterized protein LOC10 0.997 0.768 0.798 0.0
356548119 1428 PREDICTED: uncharacterized protein LOC10 0.984 0.767 0.768 0.0
356537272 1436 PREDICTED: uncharacterized protein LOC10 0.991 0.768 0.765 0.0
3575103611169 CLIP-associating protein [Medicago trunc 0.986 0.939 0.774 0.0
1478191171135 hypothetical protein VITISV_032909 [Viti 0.973 0.954 0.779 0.0
449443746 1442 PREDICTED: CLIP-associating protein 1-li 0.996 0.769 0.757 0.0
>gi|224069969|ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|222844820|gb|EEE82367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1892 bits (4901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 940/1123 (83%), Positives = 1009/1123 (89%), Gaps = 14/1123 (1%)

Query: 1    MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 60
            MQRVEGLVLGGA D+PCFRGLLKQ VGPL+TQLSDRRSS+VKQACHLLCFLSK+LLGDFE
Sbjct: 307  MQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKDLLGDFE 366

Query: 61   ACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRAR 120
            ACAEMFIP LFKLVVITVLVIAES+DNCIKTMLRNCK  RVLPRIADCAKNDR AVLRAR
Sbjct: 367  ACAEMFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRAAVLRAR 426

Query: 121  CCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR 180
            CCEYALL+LEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR
Sbjct: 427  CCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR 486

Query: 181  RLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAM 240
            RLF SFDP IQRI+NEEDGG+HRRHASPS+R+R A  SFT Q S AS++ GYGTSAIVAM
Sbjct: 487  RLFMSFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGTSAIVAM 546

Query: 241  DRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQN 300
            DR+S+LSSG SLSSGLLLSQAKSL K TERSLESVL+ASKQKV+AIESMLRGLE+SDKQN
Sbjct: 547  DRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLELSDKQN 606

Query: 301  PSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSD 360
            PS LRSSSLDLGVDPPSSRDPPFPA VPASN  TN+   EST SG+ KGSNRNGG+VLSD
Sbjct: 607  PSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNGGLVLSD 666

Query: 361  IITQIQASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMREARRFVN 417
            IITQIQASKDS KLSY +N   ESL + SSYST+R    + ER SVEE ND+RE RRF N
Sbjct: 667  IITQIQASKDSAKLSYRNNMAAESLPTFSSYSTKR----ISERGSVEEDNDIREPRRFAN 722

Query: 418  PHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMS 477
            PH+DRQY+D  YKD N+RDSH+S+IPNFQRPLLRKH  GRMSA RRKSFDDSQL LGE+S
Sbjct: 723  PHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGEVS 782

Query: 478  NYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQ 537
            +Y +GPASLSDALSEGLSPSSDW ARV+AFNYL SLLQQGPKG+QEVIQNFEKVMKLFFQ
Sbjct: 783  SYVEGPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLFFQ 842

Query: 538  HLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDI 597
            HLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL+I
Sbjct: 843  HLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLEI 902

Query: 598  VSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAK 657
            VSKTY VD LLPALLRSLDEQRSPKAKLAVIEFA+SS NKHAMNSEGSGN GILKLWLAK
Sbjct: 903  VSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWLAK 962

Query: 658  LTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEV 717
            LTPLVHDKNTKLKEAAITCIISVY+H+DS AVLNFILSLSVEEQNSLRRALKQYTPRIEV
Sbjct: 963  LTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEV 1022

Query: 718  DLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWS 777
            DLMN++QSKKERQR KSSYDPSDVVGTSSEEGY  ASKKSHYFGRYS GS+DSDGGRKWS
Sbjct: 1023 DLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSDGGRKWS 1082

Query: 778  SMQESNLMTGSMGHAMSDETKENLYQNFETGANADV-SSKTKD---LTGSNTYLEGFSTP 833
            S QES L++GS+G A  DET+ENLYQNFET +N DV SSK +D   + GS     G    
Sbjct: 1083 STQESTLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSRPG 1142

Query: 834  RID--INGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCN 891
            R++   NGL     ++ G GH+N +  ELDLN+HKP+A+K NSL D GPSIPQILHL+CN
Sbjct: 1143 RLENMDNGLNFEGLLTPGYGHDNNVLSELDLNNHKPAAVKINSLADTGPSIPQILHLICN 1202

Query: 892  GNDGSPT-SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLIN 950
            GND SPT SK GALQQLI+AS+AND S+W+KYFNQILTAVLEVLDD+DSS+RE+ LSLI 
Sbjct: 1203 GNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVLEVLDDSDSSIRELTLSLIV 1262

Query: 951  EMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL 1010
            EMLKNQKD MEDS+EI IEKLLHVT+D VPKVSNEAEHCLTV LSQYDPFRCLSVIVPLL
Sbjct: 1263 EMLKNQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLTVALSQYDPFRCLSVIVPLL 1322

Query: 1011 VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070
            VTEDEKTLVTCINCLTKLVGRLSQEELM QLPSFLPALFEAFGNQSADVRKTVVFCLVDI
Sbjct: 1323 VTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1382

Query: 1071 YIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ 1113
            YIMLGKAFLP+LE LNSTQLRLVTIYANRISQARTGT IDAS 
Sbjct: 1383 YIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDASH 1425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560273|ref|XP_002521154.1| conserved hypothetical protein [Ricinus communis] gi|223539723|gb|EEF41305.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356505094|ref|XP_003521327.1| PREDICTED: uncharacterized protein LOC100796697 [Glycine max] Back     alignment and taxonomy information
>gi|225437885|ref|XP_002265367.1| PREDICTED: CLIP-associating protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572317|ref|XP_003554315.1| PREDICTED: uncharacterized protein LOC100820523 [Glycine max] Back     alignment and taxonomy information
>gi|356548119|ref|XP_003542451.1| PREDICTED: uncharacterized protein LOC100801377 [Glycine max] Back     alignment and taxonomy information
>gi|356537272|ref|XP_003537153.1| PREDICTED: uncharacterized protein LOC100775793 [Glycine max] Back     alignment and taxonomy information
>gi|357510361|ref|XP_003625469.1| CLIP-associating protein [Medicago truncatula] gi|355500484|gb|AES81687.1| CLIP-associating protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147819117|emb|CAN66676.1| hypothetical protein VITISV_032909 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449443746|ref|XP_004139638.1| PREDICTED: CLIP-associating protein 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1113
TAIR|locus:20615991439 CLASP "CLIP-associated protein 0.915 0.708 0.622 0.0
ZFIN|ZDB-GENE-040426-23431529 clasp2 "cytoplasmic linker ass 0.565 0.411 0.218 4.5e-54
UNIPROTKB|O751221294 CLASP2 "CLIP-associating prote 0.557 0.479 0.241 6.3e-53
UNIPROTKB|E7EW491514 CLASP2 "CLIP-associating prote 0.557 0.409 0.241 1.2e-52
UNIPROTKB|E1BQ151540 CLASP2 "Uncharacterized protei 0.557 0.402 0.241 1.4e-52
MGI|MGI:19237491286 Clasp2 "CLIP associating prote 0.211 0.182 0.294 2.4e-52
RGD|6197891286 Clasp2 "cytoplasmic linker ass 0.211 0.182 0.294 6.3e-52
UNIPROTKB|Q99JD41286 Clasp2 "CLIP-associating prote 0.211 0.182 0.294 6.3e-52
UNIPROTKB|A1A5K21456 clasp1b "CLIP-associating prot 0.559 0.427 0.228 2.3e-51
UNIPROTKB|G3N2Y51539 G3N2Y5 "Uncharacterized protei 0.207 0.150 0.306 3.3e-51
TAIR|locus:2061599 CLASP "CLIP-associated protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3146 (1112.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 654/1051 (62%), Positives = 782/1051 (74%)

Query:     1 MQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 60
             M+RVEGLV GGA D+ CFRGLLKQLVGPLSTQL+DRRS+IVKQACHLLC LSKELLGDFE
Sbjct:   307 MRRVEGLVAGGATDYSCFRGLLKQLVGPLSTQLADRRSTIVKQACHLLCLLSKELLGDFE 366

Query:    61 ACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRAR 120
             ACAE FIPVLFKLVVITVLVIAES+DNCIKTMLRNCKA RVLPRIA+ AK+DRNA+LRAR
Sbjct:   367 ACAETFIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHDRNAILRAR 426

Query:   121 CCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSR 180
             CCEYALL LEHWPDAPEIQRS DLYEDLIRCCVADAMSEVR+TARMCYRMFAKTWP+RSR
Sbjct:   427 CCEYALLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFAKTWPDRSR 486

Query:   181 RLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAM 240
             RLFSSFDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL GYGTSAIVAM
Sbjct:   487 RLFSSFDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPGYGTSAIVAM 545

Query:   241 DRXXXXXXXXXXXXXXXXXXXXXXNKATERSLESVLNASKQKVSAIESMLRGLEISDKQN 300
             DR                      NK +ERSLESVL +SKQKVSAIESMLRGL ISD+QN
Sbjct:   546 DRSSNLSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLRGLHISDRQN 605

Query:   301 PSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSD 360
             P+ LRSSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSNRNGG+ LSD
Sbjct:   606 PAALRSSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSNRNGGLGLSD 664

Query:   361 IITQIQASKDSGKLXXXXXXXXXXX-XXXXXXXXXXXKLQERVSVEE-NDMREARRFVNP 418
             IITQIQASKDSG+                        +  ER S+EE ND RE RRF+  
Sbjct:   665 IITQIQASKDSGRSSYRGNLLSESHPTFSSLTAKRGSERNERSSLEESNDAREVRRFMAG 724

Query:   419 HIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSN 478
             H DRQ +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDSQLQ+G++SN
Sbjct:   725 HFDRQQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGDISN 784

Query:   479 YTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQH 538
             + DGPASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FEKVMKLF +H
Sbjct:   785 FVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKVMKLFLRH 844

Query:   539 LDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIV 598
             LDDPHHKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQPCS+TL+IV
Sbjct:   845 LDDPHHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTLEIV 904

Query:   599 SKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 658
             SKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN GILKLWLAKL
Sbjct:   905 SKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWLAKL 964

Query:   659 TPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVD 718
             TPL  DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALKQYTPRIEVD
Sbjct:   965 TPLTRDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRIEVD 1024

Query:   719 LMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSS 778
             L+NY+QSKKE+QR+KS YDPSD +GTSSEEGYA ASKK+ + GRYS GSIDSD GRKWSS
Sbjct:  1025 LLNYMQSKKEKQRIKS-YDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRKWSS 1083

Query:   779 MQESNLMTGSMGHAMSDETKENLYQNFETGANA--DV-SSKTKDLTGSNTYLEGFSTPRI 835
              QE  ++TG +G  +S  T+E LYQN  TG ++  D+ + K  D T ++      S  R 
Sbjct:  1084 SQEPTMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSIS--RT 1141

Query:   836 DINGLRDHLEVSEGAGHNNEIPPELD---LNHHKPSAIKTNSLTDAGPSIPQILHLMCNG 892
               NG  +++E+ +        PP L+   LN     +++     +    +  + H M   
Sbjct:  1142 SPNGSSENIEILDDLS-----PPHLEKNGLNLTSVDSLEGRHENEVSREL-DLGHYMLTS 1195

Query:   893 NDGSPTSKHG-ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE 951
                + T + G ++ Q++     +D S  +       + + ++++ + ++   V     N+
Sbjct:  1196 IKVNTTPESGPSIPQILHMINGSDGSPSSSK----KSGLQQLIEASVANEESVWTKYFNQ 1251

Query:   952 MLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV 1011
             +L    +V++D    + E  L +  + +    +  E  + +V+ +          VP + 
Sbjct:  1252 ILTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKL--LHVSKDTVPKVS 1309

Query:  1012 TEDEKTLVTCIN------CLTKLVGRLSQEE 1036
             TE E+ L T ++      CL+ +V  L  E+
Sbjct:  1310 TEAEQCLTTVLSQYDPFRCLSVIVPLLVTED 1340
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0005876 "spindle microtubule" evidence=IDA
GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0009524 "phragmoplast" evidence=IDA
GO:0016049 "cell growth" evidence=RCA;IMP
GO:0050821 "protein stabilization" evidence=IMP
GO:0051010 "microtubule plus-end binding" evidence=IDA
GO:0043622 "cortical microtubule organization" evidence=IDA;IMP
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005938 "cell cortex" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
ZFIN|ZDB-GENE-040426-2343 clasp2 "cytoplasmic linker associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O75122 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EW49 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ15 CLASP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1923749 Clasp2 "CLIP associating protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619789 Clasp2 "cytoplasmic linker associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99JD4 Clasp2 "CLIP-associating protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A1A5K2 clasp1b "CLIP-associating protein 1-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2Y5 G3N2Y5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWY6CLASP_ARATHNo assigned EC number0.75320.99100.7665yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II2510
hypothetical protein (1426 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1113
pfam12348228 pfam12348, CLASP_N, CLASP N terminal 9e-61
pfam12348228 pfam12348, CLASP_N, CLASP N terminal 0.001
>gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal Back     alignment and domain information 
 Score =  207 bits (528), Expect = 9e-61
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 6/201 (2%)

Query: 1   MQRVEGLVLGGAAD--HPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD 58
           + ++  ++ G A +     F   LKQL+  +   LS  R+++    CHLL  L+ +L   
Sbjct: 28  IIKLRSIIKGNAPEDYPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLKELAIQLGHH 87

Query: 59  FEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV-RVLPRIADCAKNDRNAVL 117
            +  AE+ +P L KL   T  +I+++++  +  +L N     R+  +    A  D+N   
Sbjct: 88  LDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSNVSYTPRLELQHISAALQDKNVQP 147

Query: 118 RARCCEYALLVLEHWPD-APEIQRSA--DLYEDLIRCCVADAMSEVRSTARMCYRMFAKT 174
           R     +  ++L         I+     DLYE  ++  + DA   VR TAR  +  F + 
Sbjct: 148 REYSAIWLKILLIRHGHHKSHIEHHGGLDLYEKSLKKGLEDANPGVRETARSTFWEFFRV 207

Query: 175 WPERSRRLFSSFDPAIQRIIN 195
           WP R++ L SS DP +++ + 
Sbjct: 208 WPARAKSLLSSLDPNVRKALE 228

This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228
>gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1113
KOG2956516 consensus CLIP-associating protein [General functi 100.0
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.96
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 99.88
KOG1820815 consensus Microtubule-associated protein [Cytoskel 99.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.83
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.49
KOG1242 569 consensus Protein containing adaptin N-terminal re 99.45
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.28
KOG1242569 consensus Protein containing adaptin N-terminal re 99.13
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.06
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.02
KOG2933334 consensus Uncharacterized conserved protein [Funct 98.97
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.86
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.77
KOG2933334 consensus Uncharacterized conserved protein [Funct 98.69
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.66
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.64
KOG0212 675 consensus Uncharacterized conserved protein [Funct 98.58
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.54
PTZ00429 746 beta-adaptin; Provisional 98.5
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.47
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.39
KOG2956516 consensus CLIP-associating protein [General functi 98.33
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.31
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.31
PF05004309 IFRD: Interferon-related developmental regulator ( 98.15
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.15
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.06
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.02
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 97.94
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.87
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 97.86
PRK09687280 putative lyase; Provisional 97.81
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.79
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.78
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.77
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.6
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.57
PTZ00429746 beta-adaptin; Provisional 97.52
PRK09687280 putative lyase; Provisional 97.49
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.45
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.44
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.39
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.39
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.35
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.97
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.82
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.75
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.71
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 96.62
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.59
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.57
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 96.56
KOG2025 892 consensus Chromosome condensation complex Condensi 96.52
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.51
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 96.45
PF05004309 IFRD: Interferon-related developmental regulator ( 96.44
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 96.42
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.41
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.37
KOG2032533 consensus Uncharacterized conserved protein [Funct 96.36
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.19
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.18
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.15
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.13
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.06
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 96.02
PF12231 372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.94
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.93
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.81
KOG2032533 consensus Uncharacterized conserved protein [Funct 95.8
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 95.79
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 95.77
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.77
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 95.75
KOG1243 690 consensus Protein kinase [General function predict 95.69
cd03561133 VHS VHS domain family; The VHS domain is present i 95.67
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 95.67
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.62
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.62
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 95.44
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.37
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.33
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.16
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.13
COG5096 757 Vesicle coat complex, various subunits [Intracellu 95.02
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.01
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 94.99
TIGR02270 410 conserved hypothetical protein. Members are found 94.97
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 94.95
KOG2149 393 consensus Uncharacterized conserved protein [Funct 94.75
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.51
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 94.46
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 94.4
KOG2259 823 consensus Uncharacterized conserved protein [Funct 94.37
KOG18371621 consensus Uncharacterized conserved protein [Funct 94.3
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 94.27
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.27
PF12719 298 Cnd3: Nuclear condensing complex subunits, C-term 94.21
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 93.94
cd03561133 VHS VHS domain family; The VHS domain is present i 93.84
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.8
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 93.78
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 93.74
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 93.71
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.56
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 93.54
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.48
KOG4653982 consensus Uncharacterized conserved protein [Funct 93.44
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 93.34
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 93.3
KOG2137 700 consensus Protein kinase [Signal transduction mech 93.18
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 93.05
COG5096 757 Vesicle coat complex, various subunits [Intracellu 93.04
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.02
PF08167165 RIX1: rRNA processing/ribosome biogenesis 92.85
KOG45241014 consensus Uncharacterized conserved protein [Funct 92.82
KOG2149393 consensus Uncharacterized conserved protein [Funct 92.7
PF14500262 MMS19_N: Dos2-interacting transcription regulator 92.59
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.36
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 92.34
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 92.09
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.95
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 91.94
COG1413335 FOG: HEAT repeat [Energy production and conversion 91.7
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 91.67
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 91.65
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 91.63
PF1036392 DUF2435: Protein of unknown function (DUF2435) 91.36
TIGR02270 410 conserved hypothetical protein. Members are found 91.28
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 91.12
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 91.11
PF14500262 MMS19_N: Dos2-interacting transcription regulator 91.0
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 90.9
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 90.83
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 90.64
COG1413335 FOG: HEAT repeat [Energy production and conversion 90.33
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 90.17
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 90.06
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 89.95
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 89.83
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 89.8
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 89.79
KOG2549 576 consensus Transcription initiation factor TFIID, s 89.56
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 89.39
PF14664 371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 89.36
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 89.33
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 89.28
KOG4224 550 consensus Armadillo repeat protein VAC8 required f 88.94
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 88.74
KOG2062 929 consensus 26S proteasome regulatory complex, subun 88.33
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 88.2
PF11640155 TAN: Telomere-length maintenance and DNA damage re 88.08
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 87.97
PF05536 543 Neurochondrin: Neurochondrin 87.56
PF11640155 TAN: Telomere-length maintenance and DNA damage re 87.45
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 87.41
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 87.12
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 86.91
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 86.55
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 86.27
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 86.16
KOG2137 700 consensus Protein kinase [Signal transduction mech 85.95
KOG2259823 consensus Uncharacterized conserved protein [Funct 85.94
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 85.64
KOG4653982 consensus Uncharacterized conserved protein [Funct 85.63
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 85.23
KOG0414 1251 consensus Chromosome condensation complex Condensi 85.12
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 85.05
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 84.78
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 84.14
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 83.96
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 83.64
PF03378 435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 82.94
KOG1087 470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 82.68
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 82.36
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 81.75
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 81.49
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 81.2
COG5098 1128 Chromosome condensation complex Condensin, subunit 81.08
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 80.88
KOG1243 690 consensus Protein kinase [General function predict 80.76
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 80.12
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 80.01
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-42  Score=381.09  Aligned_cols=506  Identities=24%  Similarity=0.354  Sum_probs=380.8

Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc-
Q 001255          503 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI-  581 (1113)
Q Consensus       503 R~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg-  581 (1113)
                      ..+|...|..+|..-.-..    .++..+...+.+.+.+.+-+..   |+++..++..+-+.+..|+..-+-.+|.|.| 
T Consensus         2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~~---l~~~S~~~rt~~srls~w~~l~l~k~~~k~g~   74 (516)
T KOG2956|consen    2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTLV---LETISIFVKTHYSRLSNWLKLALGKLFAKKGA   74 (516)
T ss_pred             cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhcccceee---eehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4577777888887644221    3567788888888888766543   3999999999888999999999999999998 


Q ss_pred             CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccC---CCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhH
Q 001255          582 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL  658 (1113)
Q Consensus       582 D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~---knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  658 (1113)
                      +....+.+....+...+..+|++.+|+. ++.++.++   ..||.+...++|+...+.+|...+..+ +...++..+.++
T Consensus        75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~-~t~~~~~s~rkm  152 (516)
T KOG2956|consen   75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSP-NTKETKAAIRKM  152 (516)
T ss_pred             HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCC-CCCcchhhhhhc
Confidence            9999999999999999999999999999 99999886   479999999999999998875444433 346789999999


Q ss_pred             ccccCC-CC-HHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCCC
Q 001255          659 TPLVHD-KN-TKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY  736 (1113)
Q Consensus       659 ~~~~~d-~n-~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~  736 (1113)
                      .+|+.| +. .-+-......|.++|..+ -..|...+..|++.+++...+.++.              +..++.    .+
T Consensus       153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~~~--------------n~~~~~----~~  213 (516)
T KOG2956|consen  153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSLQS--------------NGIDNG----SP  213 (516)
T ss_pred             cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHHHh--------------hCcCCC----CC
Confidence            999988 22 233344455666666555 4468888888999999998655542              111110    00


Q ss_pred             CCCCCC-CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCc
Q 001255          737 DPSDVV-GTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS  815 (1113)
Q Consensus       737 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~  815 (1113)
                      ++.... +..+...+...             ...+....             .++-++...+.+.       .       
T Consensus       214 ~~~a~~e~~~~~~n~~~~-------------~~~~P~~~-------------~~~~~~~~~~~~~-------~-------  253 (516)
T KOG2956|consen  214 SPSAEKERFDSSNNKPSL-------------PLSPPEEE-------------KPGLGSTKVNPEE-------L-------  253 (516)
T ss_pred             Cchhhhcccccccccccc-------------cCCChhhc-------------ccCCCccccCccc-------c-------
Confidence            000000 00000000000             00000000             0000000000000       0       


Q ss_pred             ccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCC
Q 001255          816 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG  895 (1113)
Q Consensus       816 ~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~  895 (1113)
                        +++. +.        -|.  ....     ...|....+.     |+         ....|+.++|.++|++++++ +.
T Consensus       254 --~~~n-~~--------~~~--~~l~-----e~~~~~~~~~-----~~---------p~~~~~~~~v~~~l~~~~g~-e~  300 (516)
T KOG2956|consen  254 --RLSN-ET--------ERL--SRLE-----EYSTDDSMDQ-----LT---------PNSVDQSALVADLLKEISGS-ER  300 (516)
T ss_pred             --cccc-ch--------hhh--hhch-----hhccCcchhh-----CC---------CCCcchhHHHHHHHHhccCc-cc
Confidence              0000 00        000  0000     0000000000     11         11224556789999999888 33


Q ss_pred             ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 001255          896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV  974 (1113)
Q Consensus       896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~  974 (1113)
                       .++|++||.+|..++.++.+.+|.++|++||..+++.|.| .+..++..||++|++||++++.+|.+|.+..+.++|++
T Consensus       301 -a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  301 -ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             -hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence             5899999999999999999999999999999999999999 68889999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255          975 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus       975 ~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
                      .+|+.++|...|++++..++..+.|..|+.++.|.|.+.++++.+.||||++++++++..++|...+++++|+++++|+.
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S  459 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS  459 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence            99999988888888777777777999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh-hhhHhhhhcCChhhHhhHHHHHHhhhccccCCCCC
Q 001255         1055 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1110 (1113)
Q Consensus      1055 ~~seVRkaAv~clv~i~~~lG-e~i~p~l~~L~~s~~kLl~~yi~R~~~~r~~~~~~ 1110 (1113)
                      ..+.|||+||||||++|..+| ++|+|||..|+.+|++||++||+|+++.++|+++|
T Consensus       460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~  516 (516)
T KOG2956|consen  460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD  516 (516)
T ss_pred             chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999 79999999999999999999999999999999875

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1113
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-27
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-19
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-14
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 6e-05
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 4e-24
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 8e-14
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 5e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-10
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-09
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-08
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-08
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 7e-05
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 1e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-07
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 3e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-05
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 8e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-04
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 5e-09
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 2e-08
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-08
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 2e-08
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 7e-06
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-04
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 2e-04
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 5e-04
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 1e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 4e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 2e-04
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-06
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-06
1qgr_A 876 Protein (importin beta subunit); transport recepto 9e-06
1qgr_A876 Protein (importin beta subunit); transport recepto 5e-05
1qgr_A 876 Protein (importin beta subunit); transport recepto 1e-04
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
 Score =  111 bits (279), Expect = 1e-27
 Identities = 38/245 (15%), Positives = 93/245 (37%), Gaps = 15/245 (6%)

Query: 475 EMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKL 534
           ++ +  D  + +     + L     W  R  +   L  LL   PK        +  ++  
Sbjct: 5   DLLDPVDILSKMPKDFYDKLE-EKKWTLRKESLEVLEKLLTDHPK---LENGEYGALVSA 60

Query: 535 FFQHL-DDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCST 593
             + +  D +  +   A   LA +     K F +Y    +P +  +  + K  V      
Sbjct: 61  LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120

Query: 594 TLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKL 653
            +D +  + S+++   +++ SL   ++P  K     F   +L +       + N  +LKL
Sbjct: 121 AIDAIYASTSLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPT---ALNKKLLKL 176

Query: 654 WLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRA-LKQYT 712
               L   +++ +  +++++   + ++       AV   +  +     + L+ A +K+  
Sbjct: 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV-----DPLKMAKIKECQ 231

Query: 713 PRIEV 717
            + E+
Sbjct: 232 EKAEI 236
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1113
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.93
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 99.92
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.89
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.84
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 99.83
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 99.83
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.83
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.81
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.81
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.8
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.79
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.78
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 99.78
1qgr_A876 Protein (importin beta subunit); transport recepto 99.77
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.74
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.73
1qgr_A876 Protein (importin beta subunit); transport recepto 99.72
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.65
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.52
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.19
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.14
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.1
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.06
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.02
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.97
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.9
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.76
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.75
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.74
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.59
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.58
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.57
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.49
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.48
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.4
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.39
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.37
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.33
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.32
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.32
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.29
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.27
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.25
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.23
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.19
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.13
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.09
2x1g_F 971 Cadmus; transport protein, developmental protein, 98.08
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.03
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.01
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.99
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.99
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.97
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.9
2x1g_F971 Cadmus; transport protein, developmental protein, 97.83
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.8
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.76
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.7
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 97.7
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.69
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.66
2x19_B963 Importin-13; nuclear transport, protein transport; 97.55
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 97.54
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.53
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.49
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.36
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.35
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.28
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.11
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.11
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 97.03
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 96.92
2x19_B 963 Importin-13; nuclear transport, protein transport; 96.87
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.62
3g2s_A149 C-terminal fragment of sortilin-related receptor; 96.52
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 96.51
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.42
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 96.4
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 96.39
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 96.38
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 96.37
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 96.3
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 96.24
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.11
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.05
3nmz_A458 APC variant protein; protein-protein complex, arma 96.01
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.81
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 95.71
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.63
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.62
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.59
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.5
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 95.37
3tjz_B 355 Coatomer subunit gamma; protein trafficking, golgi 95.28
3nmz_A458 APC variant protein; protein-protein complex, arma 95.24
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.12
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 94.93
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.87
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 94.57
3opb_A 778 SWI5-dependent HO expression protein 4; heat and a 93.96
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 93.68
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 93.58
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 93.54
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 93.52
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 93.24
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 93.11
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 93.01
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 92.99
3grl_A 651 General vesicular transport factor P115; vesicle t 92.98
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 92.95
3g2s_A149 C-terminal fragment of sortilin-related receptor; 92.89
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 92.65
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 92.63
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 92.48
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 91.93
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 91.92
3tjz_B 355 Coatomer subunit gamma; protein trafficking, golgi 91.67
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 91.6
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 90.86
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 90.48
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 90.03
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 89.48
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 89.29
3u0r_A 507 Apoptosis inhibitor 5; heat repeat, armadillo repe 89.04
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 88.98
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 88.75
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 87.83
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 86.06
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 83.54
3grl_A 651 General vesicular transport factor P115; vesicle t 83.48
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 81.85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.93  E-value=1.5e-24  Score=237.66  Aligned_cols=213  Identities=14%  Similarity=0.205  Sum_probs=193.0

Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHH-HHhcCCchhh-HHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhch-hhh
Q 001255          885 ILHLMCNGNDGSPTSKHGALQQLIK-ASVANDHSIW-TKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQK-DVM  960 (1113)
Q Consensus       885 lL~~l~~~~~~~~~~R~~AL~~L~~-~l~~~~~~~~-~~~f~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~-~~~  960 (1113)
                      +...+..++   |++|++|+++|.. ++.......+ ..+|.+++..|.+++ .|+|..||..|+++|+.|++.++ ..|
T Consensus        21 f~~~l~s~~---w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           21 FQERITSSK---WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             HHHHHTCSS---HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             HHHHhhcCC---HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            445565555   8999999999999 8865432222 457889999999999 89999999999999999999999 899


Q ss_pred             h-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc------C-hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255          961 E-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY------D-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus       961 ~-~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~------~-p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
                      . +|+..++|.||++++|+++.|++++..|+.+|+..+      + ++.+++.|.+.+++++|+.+.+++.+|..+++..
T Consensus        98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            9 999999999999999999999999999999999998      6 7789999999999999999999999999999988


Q ss_pred             CH--HHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHhh
Q 001255         1033 SQ--EELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRI 1100 (1113)
Q Consensus      1033 ~~--~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R~ 1100 (1113)
                      +.  ..+.+++ +.++|.+.++++|++++||++|.+||..+|.++|+ +|.||++.|++.+++.|.+|++++
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~~  249 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKTL  249 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC-
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            85  6777899 99999999999999999999999999999999997 699999999999999999999874
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1113
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-14
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-12
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-11
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-10
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-09
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-09
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 8e-05
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-07
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-07
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 6e-06
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 4e-07
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 7e-07
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 0.002
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 5e-06
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 3e-04
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 9e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 2e-05
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 5e-14
 Identities = 111/1088 (10%), Positives = 278/1088 (25%), Gaps = 111/1088 (10%)

Query: 23   KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIA 82
            +++V  +   L D+   +   A   L  L  ++    E   E  +  L   ++     + 
Sbjct: 44   RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLR 100

Query: 83   ESSDNCIKTMLRNCKAV------------RVLPRIADCAKNDRNAVLRARCCEYALLVLE 130
            + S   +KT++                  ++  R+        +  ++    +    +L 
Sbjct: 101  DISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160

Query: 131  HWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAI 190
                   +          +   +      VR    +       +       +F      +
Sbjct: 161  RQG--GLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHL 215

Query: 191  QRIINEEDGGMHRRHASPSVRE--RGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSS 248
               +++ D     R     +    R A             L     +      R   + +
Sbjct: 216  LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA 275

Query: 249  GASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSS 308
              S          +   K     + +++N   + ++   +     E  D+          
Sbjct: 276  FESF--------VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD 327

Query: 309  LDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQAS 368
             D G D   S D      V  +       +V +    L +        V   +I++ +  
Sbjct: 328  DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK----TVSPALISRFKER 383

Query: 369  KDS-GKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDA 427
            +++     +H+    L       +        E+       ++     +   + +Q  + 
Sbjct: 384  EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 443

Query: 428  SYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLS 487
            S K      +  + + N     L +H    +        D                    
Sbjct: 444  SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND-------------------- 483

Query: 488  DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVA 547
                     SS    ++ A + L  +L       Q    + + ++      + DP +K+ 
Sbjct: 484  --------KSSSSNLKIDALSCLYVILCNHSP--QVFHPHVQALVPPVVACVGDPFYKIT 533

Query: 548  QAALSTLAD-------IIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSK 600
              AL            +          Y++ +      RL                +   
Sbjct: 534  SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 593

Query: 601  TYSV-DSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLT 659
              ++ D+L   L  +L                + +L   A +        +L   +  L 
Sbjct: 594  ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 653

Query: 660  PLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDL 719
              +      LK   ++ +  +  +Y  +                             +D 
Sbjct: 654  SFLRKNQRALKLGTLSALDILIKNYSDSLT--------------------AAMIDAVLDE 693

Query: 720  MNYLQSKKERQRLKSSYDPSDVVGTS-SEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSS 778
            +  L S+ +    + +      +          ++    +         +   G      
Sbjct: 694  LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAML 753

Query: 779  MQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDIN 838
                 L+     +    +    L     + + A    ++             + P+    
Sbjct: 754  DFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPA 813

Query: 839  GLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILH-LMCNGNDGSP 897
             +   ++  + +   + I            ++             ++   ++   +  S 
Sbjct: 814  VVGQFIQDVKNSRSTDSI------RLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSE 867

Query: 898  TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK 957
              K  A   L   SV N          + L  VL+ +         +  SL   +     
Sbjct: 868  EVKSAASYALGSISVGNLP--------EYLPFVLQEITSQPKRQYLLLHSLKEIISSASV 919

Query: 958  DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKT 1017
              ++  VE +   LL   + A     N    CL   L+  DP   L  +   L++     
Sbjct: 920  VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGK-LTLIDPETLLPRLKGYLISGSSYA 978

Query: 1018 LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA 1077
              + +  +   +     + +   L + +    +   +   +VR+  +             
Sbjct: 979  RSSVVTAVKFTISD-HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL 1037

Query: 1078 FLPYLERL 1085
                L+ +
Sbjct: 1038 IRDLLDTV 1045
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1113
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.65
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.61
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.51
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.48
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.3
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.29
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.14
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.07
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.05
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.97
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.76
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.7
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.68
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.3
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.2
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.57
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.57
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.33
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.29
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.99
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.9
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.87
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.8
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 96.4
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 96.12
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.11
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 96.09
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.9
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.9
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 95.87
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.68
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 94.86
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 94.14
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 93.49
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 93.39
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 92.22
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 92.1
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 91.61
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 90.04
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 89.95
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 87.64
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 84.36
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 80.68
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.1e-13  Score=158.52  Aligned_cols=406  Identities=14%  Similarity=0.134  Sum_probs=272.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255          494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL  573 (1113)
Q Consensus       494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll  573 (1113)
                      ++.|.++..|+.+...+..+.+....   +  ..-..+...|...+.|.+..|-..+++++..++...+  .+.+...++
T Consensus       172 l~~D~~~~VR~~a~~~l~~~~~~~~~---~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~  244 (588)
T d1b3ua_         172 LCSDDTPMVRRAAASKLGEFAKVLEL---D--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--QEDLEALVM  244 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCH---H--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--HHHHHHHTH
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHhcH---H--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCC--HHHHHHHHH
Confidence            57899999999999999999887543   1  1124677788888999999999999999999988764  345666778


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc----hHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChh
Q 001255          574 PHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS----LLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG  649 (1113)
Q Consensus       574 ~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~----~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~  649 (1113)
                      |.+..-+.|....||..+.++|..+.+.++.+.    +++.+...+. ..++.+|..++.-+...+..  ..... ....
T Consensus       245 ~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~--l~~~~-~~~~  320 (588)
T d1b3ua_         245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK-DCEAEVRAAASHKVKEFCEN--LSADC-RENV  320 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHT--SCTTT-HHHH
T ss_pred             HHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHh-ccchHHHHHHHHHHHHHHHH--Hhhhh-hhhh
Confidence            877777789988899999999999988877654    3444443333 46789999988887654432  11111 0011


Q ss_pred             hHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhh
Q 001255          650 ILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKER  729 (1113)
Q Consensus       650 ~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~  729 (1113)
                      .+...++.+...+.|.++.||..+..++..+...++.......+       ...+               ..+++...  
T Consensus       321 ~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l-------~p~l---------------~~~l~d~~--  376 (588)
T d1b3ua_         321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL-------LPLF---------------LAQLKDEC--  376 (588)
T ss_dssp             HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT-------HHHH---------------HHHHTCSC--
T ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHH-------HHHH---------------HHHHHhhh--
Confidence            22334555566778999999999988887766544332111111       0111               11221100  


Q ss_pred             hccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCC
Q 001255          730 QRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGA  809 (1113)
Q Consensus       730 ~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~  809 (1113)
                                     +  ..    +.....       ..                              ......     
T Consensus       377 ---------------~--~v----~~~~~~-------~l------------------------------~~~~~~-----  393 (588)
T d1b3ua_         377 ---------------P--EV----RLNIIS-------NL------------------------------DCVNEV-----  393 (588)
T ss_dssp             ---------------H--HH----HHHHHT-------TC------------------------------HHHHHH-----
T ss_pred             ---------------h--hh----hhHHHH-------HH------------------------------HHHHhh-----
Confidence                           0  00    000000       00                              000000     


Q ss_pred             CcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHh
Q 001255          810 NADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLM  889 (1113)
Q Consensus       810 ~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l  889 (1113)
                                          .+  ...   .                                     ....++.+...+
T Consensus       394 --------------------~~--~~~---~-------------------------------------~~~ll~~l~~~~  411 (588)
T d1b3ua_         394 --------------------IG--IRQ---L-------------------------------------SQSLLPAIVELA  411 (588)
T ss_dssp             --------------------SC--HHH---H-------------------------------------HHHHHHHHHHHH
T ss_pred             --------------------cc--hhh---h-------------------------------------hhHHHHHHHHHH
Confidence                                00  000   0                                     000234555556


Q ss_pred             hcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 001255          890 CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIE  969 (1113)
Q Consensus       890 ~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~  969 (1113)
                      .+.+   |..|..+++.+..+...-+...+.   ..+...+...+.|.+..||..|+..|..|+...|..+  ....++|
T Consensus       412 ~d~~---~~~r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~--~~~~i~~  483 (588)
T d1b3ua_         412 EDAK---WRVRLAIIEYMPLLAGQLGVEFFD---EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIP  483 (588)
T ss_dssp             TCSS---HHHHHHHHHHHHHHHHHHCGGGCC---HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHH
T ss_pred             hccc---HHHHHHHHHHHHHHHHHcChHhHH---HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHH--HHHHHHH
Confidence            5555   889999999988877654433322   3445567778899999999999999999999877543  3456888


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHH
Q 001255          970 KLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1045 (1113)
Q Consensus       970 ~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~li 1045 (1113)
                      .+++...|+...+|.++..|+..+...++.+    .+++.+...+.+...-.|..+++.|..+...++...+.   ..+.
T Consensus       484 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~---~~i~  560 (588)
T d1b3ua_         484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVK  560 (588)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH---HHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHH---HHHH
Confidence            8999999999999999999999999888765    35666666666666667888899999998888766553   4567


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255         1046 PALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus      1046 p~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
                      |.+.+..+|.|.+||..|..++-.+
T Consensus       561 ~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         561 PILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            8888889999999999999987543
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure